Query 007957
Match_columns 583
No_of_seqs 582 out of 4475
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1066 Sms Predicted ATP-depe 100.0 2E-111 5E-116 870.1 42.3 447 113-581 5-455 (456)
2 TIGR00416 sms DNA repair prote 100.0 3E-94 6.5E-99 782.2 45.5 448 111-576 3-454 (454)
3 PRK11823 DNA repair protein Ra 100.0 3.8E-93 8.3E-98 773.2 46.2 441 111-581 3-445 (446)
4 cd01121 Sms Sms (bacterial rad 100.0 8.4E-78 1.8E-82 637.3 34.3 370 116-503 1-372 (372)
5 TIGR00763 lon ATP-dependent pr 100.0 6.5E-34 1.4E-38 329.3 24.8 190 388-580 572-775 (775)
6 TIGR02903 spore_lon_C ATP-depe 100.0 5.5E-33 1.2E-37 313.0 26.6 190 389-580 417-615 (615)
7 COG0466 Lon ATP-dependent Lon 100.0 2.7E-33 5.8E-38 306.1 21.1 192 388-582 570-775 (782)
8 TIGR00368 Mg chelatase-related 100.0 3.8E-33 8.1E-38 306.1 18.5 158 420-580 1-164 (499)
9 TIGR02902 spore_lonB ATP-depen 100.0 3E-32 6.4E-37 302.8 21.3 189 390-580 320-531 (531)
10 PRK10787 DNA-binding ATP-depen 100.0 6.1E-31 1.3E-35 302.5 25.1 193 387-582 567-773 (784)
11 PRK09862 putative ATP-dependen 100.0 2.6E-31 5.7E-36 290.4 18.9 160 417-580 3-168 (506)
12 PF13541 ChlI: Subunit ChlI of 100.0 2.4E-31 5.2E-36 238.6 13.2 117 435-552 1-121 (121)
13 KOG2004 Mitochondrial ATP-depe 100.0 2.3E-28 5.1E-33 265.8 16.6 194 387-582 691-899 (906)
14 TIGR03877 thermo_KaiC_1 KaiC d 99.9 3.1E-26 6.8E-31 230.2 21.9 201 185-400 2-234 (237)
15 PRK13765 ATP-dependent proteas 99.9 1.2E-26 2.6E-31 260.4 19.9 167 414-581 425-603 (637)
16 TIGR03878 thermo_KaiC_2 KaiC d 99.9 2.1E-25 4.5E-30 227.1 20.8 201 186-401 4-257 (259)
17 TIGR00764 lon_rel lon-related 99.9 8.4E-26 1.8E-30 254.2 19.7 167 415-581 417-594 (608)
18 PRK04328 hypothetical protein; 99.9 2.5E-25 5.4E-30 225.4 21.1 202 184-400 3-236 (249)
19 TIGR02655 circ_KaiC circadian 99.9 2.1E-25 4.5E-30 246.0 20.8 202 183-398 242-462 (484)
20 PF06745 KaiC: KaiC; InterPro 99.9 3.7E-25 7.9E-30 220.5 16.7 200 187-399 2-224 (226)
21 PLN03187 meiotic recombination 99.9 1.1E-24 2.3E-29 228.8 20.9 211 183-398 105-342 (344)
22 PRK09361 radB DNA repair and r 99.9 1.3E-24 2.7E-29 216.5 19.8 206 183-398 2-224 (225)
23 PF05362 Lon_C: Lon protease ( 99.9 4.9E-25 1.1E-29 215.3 16.2 188 390-580 2-203 (204)
24 PLN03186 DNA repair protein RA 99.9 1.8E-24 3.9E-29 227.3 19.8 211 183-399 102-341 (342)
25 TIGR02238 recomb_DMC1 meiotic 99.9 3.5E-24 7.5E-29 223.2 20.0 209 183-397 75-312 (313)
26 TIGR02239 recomb_RAD51 DNA rep 99.9 2.4E-24 5.2E-29 224.9 18.7 210 183-398 75-314 (316)
27 TIGR03881 KaiC_arch_4 KaiC dom 99.9 1.1E-23 2.4E-28 210.2 20.9 198 185-397 1-227 (229)
28 PHA02542 41 41 helicase; Provi 99.9 3.4E-24 7.4E-29 234.3 18.4 200 184-391 170-417 (473)
29 TIGR03880 KaiC_arch_3 KaiC dom 99.9 2.2E-23 4.9E-28 207.5 21.5 198 194-401 3-221 (224)
30 TIGR02236 recomb_radA DNA repa 99.9 1.4E-23 3.1E-28 219.1 19.9 207 184-396 75-309 (310)
31 cd01394 radB RadB. The archaea 99.9 1E-23 2.2E-28 208.9 17.5 201 187-396 2-218 (218)
32 COG0606 Predicted ATPase with 99.9 5.7E-25 1.2E-29 233.3 8.7 149 430-581 2-156 (490)
33 TIGR02237 recomb_radB DNA repa 99.9 2.1E-23 4.6E-28 205.2 19.0 194 196-396 1-209 (209)
34 PTZ00035 Rad51 protein; Provis 99.9 4.5E-23 9.7E-28 217.1 20.3 212 183-399 97-336 (337)
35 PRK04301 radA DNA repair and r 99.9 4.9E-23 1.1E-27 215.8 20.0 207 184-396 82-315 (317)
36 cd00984 DnaB_C DnaB helicase C 99.9 4.2E-23 9.2E-28 207.3 17.3 187 195-388 2-239 (242)
37 PRK09302 circadian clock prote 99.9 1.5E-22 3.3E-27 225.0 21.6 206 184-401 11-242 (509)
38 cd01393 recA_like RecA is a b 99.9 9E-23 1.9E-27 202.9 17.3 196 187-385 2-224 (226)
39 TIGR02655 circ_KaiC circadian 99.9 1.2E-22 2.7E-27 224.0 20.1 204 185-400 2-231 (484)
40 cd01123 Rad51_DMC1_radA Rad51_ 99.9 1.1E-22 2.3E-27 203.5 17.7 205 187-396 2-235 (235)
41 PRK09165 replicative DNA helic 99.9 7.7E-23 1.7E-27 225.8 17.6 201 184-388 198-476 (497)
42 cd01122 GP4d_helicase GP4d_hel 99.9 1.3E-22 2.8E-27 207.5 17.9 192 185-385 12-256 (271)
43 PRK06067 flagellar accessory p 99.9 2.4E-22 5.2E-27 201.4 19.1 200 184-399 5-228 (234)
44 TIGR03600 phage_DnaB phage rep 99.9 1.1E-22 2.3E-27 221.1 17.8 192 184-386 175-418 (421)
45 PF03796 DnaB_C: DnaB-like hel 99.9 6.5E-23 1.4E-27 208.7 14.5 191 186-386 2-244 (259)
46 TIGR00665 DnaB replicative DNA 99.9 2.5E-22 5.4E-27 219.1 19.2 196 183-388 175-421 (434)
47 PRK08760 replicative DNA helic 99.9 2.1E-22 4.5E-27 221.1 17.4 196 184-389 210-457 (476)
48 PRK08006 replicative DNA helic 99.9 3.4E-22 7.4E-27 218.9 18.5 194 186-389 207-453 (471)
49 PRK06321 replicative DNA helic 99.9 2.4E-22 5.3E-27 219.9 17.2 197 185-389 208-455 (472)
50 PF08423 Rad51: Rad51; InterP 99.9 5.6E-22 1.2E-26 201.5 17.2 210 184-398 18-255 (256)
51 PRK09302 circadian clock prote 99.9 1.4E-21 2.9E-26 217.4 20.7 204 183-401 252-474 (509)
52 cd00983 recA RecA is a bacter 99.9 1.7E-21 3.7E-26 202.6 19.9 207 183-399 33-268 (325)
53 PRK05595 replicative DNA helic 99.9 8.1E-22 1.8E-26 215.5 17.9 194 184-387 182-426 (444)
54 PRK06904 replicative DNA helic 99.9 1E-21 2.2E-26 215.4 17.9 194 184-387 202-450 (472)
55 PRK09354 recA recombinase A; P 99.9 1.8E-21 3.8E-26 203.9 18.8 208 183-400 38-274 (349)
56 PRK05748 replicative DNA helic 99.9 1.3E-21 2.7E-26 214.3 18.6 197 184-389 184-432 (448)
57 PRK07004 replicative DNA helic 99.9 7E-22 1.5E-26 216.3 16.4 196 184-389 194-441 (460)
58 PRK08506 replicative DNA helic 99.9 1.1E-21 2.4E-26 215.5 17.8 194 185-389 174-441 (472)
59 PRK06749 replicative DNA helic 99.9 1E-21 2.3E-26 212.9 17.1 195 185-389 168-417 (428)
60 PRK08840 replicative DNA helic 99.9 1.3E-21 2.8E-26 213.9 17.9 207 185-401 199-459 (464)
61 PRK05636 replicative DNA helic 99.9 1.1E-21 2.4E-26 216.1 17.5 196 184-389 246-492 (505)
62 TIGR02653 Lon_rel_chp conserve 99.9 3.2E-21 6.9E-26 212.3 19.3 166 414-580 492-672 (675)
63 TIGR02012 tigrfam_recA protein 99.9 1.8E-21 3.8E-26 202.3 16.0 208 183-400 33-269 (321)
64 PRK08533 flagellar accessory p 99.8 7.4E-20 1.6E-24 183.2 18.8 192 194-397 11-224 (230)
65 COG0305 DnaB Replicative DNA h 99.8 1.8E-19 3.9E-24 192.6 16.8 192 186-387 179-421 (435)
66 COG0467 RAD55 RecA-superfamily 99.8 2.1E-18 4.6E-23 175.7 19.9 202 184-400 3-235 (260)
67 cd01124 KaiC KaiC is a circadi 99.8 1.9E-18 4.1E-23 166.3 16.6 163 209-383 1-186 (187)
68 PRK09519 recA DNA recombinatio 99.8 3.5E-18 7.7E-23 194.1 19.6 198 183-391 38-263 (790)
69 COG0468 RecA RecA/RadA recombi 99.8 5E-18 1.1E-22 173.0 16.5 207 183-399 39-268 (279)
70 PRK05973 replicative DNA helic 99.8 4.6E-18 9.9E-23 170.1 14.8 136 195-342 53-195 (237)
71 PF13481 AAA_25: AAA domain; P 99.7 9.6E-18 2.1E-22 162.4 9.1 152 185-343 13-192 (193)
72 COG2874 FlaH Predicted ATPases 99.7 5.8E-16 1.3E-20 149.4 17.3 197 186-398 10-230 (235)
73 PF00154 RecA: recA bacterial 99.7 4.2E-16 9.1E-21 161.9 17.1 206 184-399 32-266 (322)
74 cd01125 repA Hexameric Replica 99.7 3.7E-15 8.1E-20 150.0 17.9 153 207-363 1-190 (239)
75 COG1067 LonB Predicted ATP-dep 99.6 1.4E-15 3.1E-20 170.6 14.8 166 416-582 427-621 (647)
76 KOG1434 Meiotic recombination 99.6 3.3E-16 7.2E-21 153.7 7.2 210 183-397 94-332 (335)
77 PRK07773 replicative DNA helic 99.6 2.2E-15 4.8E-20 177.3 13.6 167 184-362 198-408 (886)
78 cd01120 RecA-like_NTPases RecA 99.5 5.2E-14 1.1E-18 130.8 12.4 150 209-363 1-165 (165)
79 KOG1564 DNA repair protein RHP 99.5 1.8E-13 4E-18 136.4 15.1 209 184-396 82-349 (351)
80 COG3598 RepA RecA-family ATPas 99.4 1.3E-12 2.7E-17 132.8 14.0 142 194-343 80-245 (402)
81 COG1131 CcmA ABC-type multidru 99.4 1.2E-12 2.7E-17 135.8 11.5 143 202-367 26-216 (293)
82 COG1126 GlnQ ABC-type polar am 99.4 7.2E-12 1.6E-16 121.6 12.6 140 203-366 24-214 (240)
83 KOG2373 Predicted mitochondria 99.3 2.6E-12 5.6E-17 131.2 9.4 180 194-380 261-476 (514)
84 COG1120 FepC ABC-type cobalami 99.3 6.8E-12 1.5E-16 126.5 12.2 140 204-366 25-217 (258)
85 COG1124 DppF ABC-type dipeptid 99.3 1.3E-11 2.8E-16 121.9 11.5 141 204-367 30-221 (252)
86 PRK13537 nodulation ABC transp 99.3 1.6E-11 3.5E-16 128.2 11.4 140 203-366 29-216 (306)
87 PRK13536 nodulation factor exp 99.3 2.5E-11 5.4E-16 128.5 11.0 139 204-366 64-250 (340)
88 cd03229 ABC_Class3 This class 99.3 3E-11 6.4E-16 116.2 10.6 138 204-364 23-177 (178)
89 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 7E-11 1.5E-15 118.8 13.2 145 203-365 26-216 (254)
90 TIGR01188 drrA daunorubicin re 99.2 3.6E-11 7.8E-16 125.4 11.5 140 203-366 15-202 (302)
91 COG1122 CbiO ABC-type cobalt t 99.2 4.6E-11 1E-15 119.8 11.0 141 203-366 26-217 (235)
92 cd03230 ABC_DR_subfamily_A Thi 99.2 5.2E-11 1.1E-15 114.0 10.9 138 204-365 23-172 (173)
93 COG4586 ABC-type uncharacteriz 99.2 3.1E-11 6.7E-16 120.7 9.2 159 203-384 46-253 (325)
94 COG4555 NatA ABC-type Na+ tran 99.2 5.8E-11 1.3E-15 114.1 10.7 137 204-367 25-212 (245)
95 COG1136 SalX ABC-type antimicr 99.2 1E-10 2.3E-15 115.8 12.6 139 203-365 27-219 (226)
96 cd03216 ABC_Carb_Monos_I This 99.2 6.1E-11 1.3E-15 112.5 10.4 135 204-366 23-160 (163)
97 cd03261 ABC_Org_Solvent_Resist 99.2 9.3E-11 2E-15 117.5 12.0 62 288-366 154-215 (235)
98 cd03258 ABC_MetN_methionine_tr 99.2 1.1E-10 2.5E-15 116.7 12.6 62 288-366 158-219 (233)
99 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 9.9E-11 2.2E-15 115.9 12.0 60 288-365 158-217 (218)
100 cd03214 ABC_Iron-Siderophores_ 99.2 1.6E-10 3.4E-15 111.3 12.9 140 204-366 22-176 (180)
101 cd03265 ABC_DrrA DrrA is the A 99.2 7.8E-11 1.7E-15 116.9 10.9 62 288-366 149-210 (220)
102 TIGR00960 3a0501s02 Type II (G 99.2 1.1E-10 2.4E-15 115.4 11.9 60 288-365 156-215 (216)
103 cd03256 ABC_PhnC_transporter A 99.2 1E-10 2.2E-15 117.5 11.7 62 288-366 162-223 (241)
104 TIGR02315 ABC_phnC phosphonate 99.2 1.6E-10 3.4E-15 116.3 12.9 62 288-366 163-224 (243)
105 COG1750 Archaeal serine protea 99.2 2.8E-10 6.1E-15 123.6 15.4 159 421-580 39-208 (579)
106 cd03266 ABC_NatA_sodium_export 99.2 1.1E-10 2.5E-15 115.4 11.5 61 288-366 154-214 (218)
107 cd03259 ABC_Carb_Solutes_like 99.2 7.2E-11 1.6E-15 116.5 10.0 63 287-366 147-209 (213)
108 COG4608 AppF ABC-type oligopep 99.2 1.2E-10 2.7E-15 117.2 11.8 142 203-367 35-189 (268)
109 cd03246 ABCC_Protease_Secretio 99.2 1.2E-10 2.7E-15 111.3 11.1 137 204-365 25-172 (173)
110 TIGR02314 ABC_MetN D-methionin 99.2 1.3E-10 2.9E-15 123.0 12.0 140 204-366 28-219 (343)
111 cd03268 ABC_BcrA_bacitracin_re 99.2 1.8E-10 3.9E-15 113.2 12.1 138 204-366 23-204 (208)
112 TIGR01288 nodI ATP-binding ABC 99.2 1.1E-10 2.5E-15 121.7 11.2 62 287-366 152-213 (303)
113 cd03298 ABC_ThiQ_thiamine_tran 99.2 1E-10 2.2E-15 115.3 10.1 62 288-366 146-207 (211)
114 COG1118 CysA ABC-type sulfate/ 99.2 1.4E-10 3E-15 117.9 11.1 140 203-366 24-216 (345)
115 PRK11153 metN DL-methionine tr 99.2 1.7E-10 3.6E-15 122.5 12.4 62 288-366 158-219 (343)
116 cd03222 ABC_RNaseL_inhibitor T 99.2 1.1E-10 2.3E-15 112.5 9.8 128 203-365 21-149 (177)
117 COG1127 Ttg2A ABC-type transpo 99.2 2.9E-10 6.3E-15 112.2 12.8 141 203-366 30-224 (263)
118 cd03267 ABC_NatA_like Similar 99.2 1.3E-10 2.9E-15 116.7 10.7 63 287-366 170-232 (236)
119 cd03292 ABC_FtsE_transporter F 99.2 2.2E-10 4.8E-15 112.9 12.1 60 288-365 154-213 (214)
120 cd03225 ABC_cobalt_CbiO_domain 99.2 1.3E-10 2.9E-15 114.3 10.4 59 288-364 152-210 (211)
121 COG4152 ABC-type uncharacteriz 99.2 4E-11 8.6E-16 118.2 6.4 160 204-382 25-224 (300)
122 cd03301 ABC_MalK_N The N-termi 99.2 9.6E-11 2.1E-15 115.6 9.2 63 287-366 147-209 (213)
123 COG1116 TauB ABC-type nitrate/ 99.2 3E-10 6.6E-15 113.0 12.6 145 204-365 26-208 (248)
124 cd03269 ABC_putative_ATPase Th 99.2 2.1E-10 4.6E-15 112.9 11.4 62 287-366 145-206 (210)
125 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 2.4E-10 5.1E-15 114.8 11.6 62 287-366 149-210 (236)
126 cd03226 ABC_cobalt_CbiO_domain 99.1 2.1E-10 4.6E-15 112.5 11.1 60 288-365 144-203 (205)
127 cd03228 ABCC_MRP_Like The MRP 99.1 1.6E-10 3.5E-15 110.3 9.8 135 204-364 25-170 (171)
128 COG1135 AbcC ABC-type metal io 99.1 2.4E-10 5.3E-15 116.4 11.5 142 204-368 29-222 (339)
129 PRK10908 cell division protein 99.1 3.7E-10 8E-15 112.3 12.5 61 288-366 155-215 (222)
130 TIGR02673 FtsE cell division A 99.1 2.9E-10 6.2E-15 112.2 11.6 59 288-364 155-213 (214)
131 cd03293 ABC_NrtD_SsuB_transpor 99.1 1.9E-10 4E-15 114.2 10.2 145 204-365 27-211 (220)
132 TIGR03522 GldA_ABC_ATP gliding 99.1 1.8E-10 4E-15 120.0 10.6 61 287-366 150-210 (301)
133 TIGR02211 LolD_lipo_ex lipopro 99.1 4.6E-10 1E-14 111.3 12.9 60 288-365 159-218 (221)
134 COG3845 ABC-type uncharacteriz 99.1 2.8E-10 6E-15 122.1 11.7 139 203-366 26-218 (501)
135 PRK13634 cbiO cobalt transport 99.1 2.7E-10 5.8E-15 118.1 11.4 63 287-366 162-224 (290)
136 cd03215 ABC_Carb_Monos_II This 99.1 2.7E-10 5.9E-15 109.9 10.6 138 204-365 23-181 (182)
137 cd03263 ABC_subfamily_A The AB 99.1 2.9E-10 6.2E-15 112.7 11.0 60 288-366 151-210 (220)
138 cd03213 ABCG_EPDR ABCG transpo 99.1 4.2E-10 9.1E-15 109.8 12.0 138 204-366 32-190 (194)
139 PRK13636 cbiO cobalt transport 99.1 3.1E-10 6.8E-15 117.2 11.6 62 288-366 159-220 (283)
140 cd03247 ABCC_cytochrome_bd The 99.1 4.9E-10 1.1E-14 107.7 12.0 137 204-366 25-174 (178)
141 cd03294 ABC_Pro_Gly_Bertaine T 99.1 3.2E-10 6.9E-15 116.3 11.4 62 288-366 178-239 (269)
142 cd03262 ABC_HisP_GlnQ_permease 99.1 4.5E-10 9.9E-15 110.7 12.1 60 288-365 153-212 (213)
143 PRK13635 cbiO cobalt transport 99.1 2.7E-10 5.9E-15 117.5 10.8 61 288-366 158-218 (279)
144 PRK11831 putative ABC transpor 99.1 4.1E-10 8.8E-15 115.5 11.8 62 288-366 161-222 (269)
145 PRK10584 putative ABC transpor 99.1 5E-10 1.1E-14 111.7 12.1 61 288-366 164-224 (228)
146 PRK14250 phosphate ABC transpo 99.1 2.8E-10 6.1E-15 114.7 10.3 63 287-366 148-210 (241)
147 cd03233 ABC_PDR_domain1 The pl 99.1 4.2E-10 9.2E-15 110.5 11.1 140 204-366 30-198 (202)
148 cd03218 ABC_YhbG The ABC trans 99.1 3E-10 6.4E-15 113.5 10.2 61 288-366 151-211 (232)
149 PRK11308 dppF dipeptide transp 99.1 4.7E-10 1E-14 118.3 12.1 62 288-366 172-233 (327)
150 cd03297 ABC_ModC_molybdenum_tr 99.1 4.9E-10 1.1E-14 110.8 11.5 62 288-366 149-210 (214)
151 PRK13637 cbiO cobalt transport 99.1 3.7E-10 8.1E-15 116.9 11.0 62 288-366 162-223 (287)
152 PRK11650 ugpC glycerol-3-phosp 99.1 2.4E-10 5.3E-15 121.8 9.8 63 287-366 151-213 (356)
153 cd03237 ABC_RNaseL_inhibitor_d 99.1 4.5E-10 9.9E-15 113.8 11.1 147 202-365 20-193 (246)
154 TIGR03410 urea_trans_UrtE urea 99.1 3.7E-10 8.1E-15 112.7 10.4 62 288-366 149-210 (230)
155 PRK11247 ssuB aliphatic sulfon 99.1 5.7E-10 1.2E-14 113.8 11.7 146 204-366 35-212 (257)
156 cd03257 ABC_NikE_OppD_transpor 99.1 4.1E-10 9E-15 112.0 10.5 62 288-366 163-224 (228)
157 COG1134 TagH ABC-type polysacc 99.1 7E-10 1.5E-14 110.0 11.8 139 204-366 50-225 (249)
158 TIGR02770 nickel_nikD nickel i 99.1 9.8E-10 2.1E-14 109.9 13.1 63 287-366 142-204 (230)
159 cd03232 ABC_PDR_domain2 The pl 99.1 7.4E-10 1.6E-14 107.8 11.9 138 204-365 30-187 (192)
160 PRK13646 cbiO cobalt transport 99.1 5.3E-10 1.1E-14 115.7 11.5 62 288-366 163-224 (286)
161 cd03295 ABC_OpuCA_Osmoprotecti 99.1 4.2E-10 9E-15 113.4 10.5 63 287-366 152-214 (242)
162 cd03224 ABC_TM1139_LivF_branch 99.1 4.3E-10 9.4E-15 111.5 10.4 61 288-366 150-210 (222)
163 TIGR01277 thiQ thiamine ABC tr 99.1 4.2E-10 9.1E-15 111.2 10.3 63 287-366 145-207 (213)
164 cd03217 ABC_FeS_Assembly ABC-t 99.1 4.5E-10 9.7E-15 110.1 10.3 139 204-366 23-183 (200)
165 PRK11300 livG leucine/isoleuci 99.1 5.4E-10 1.2E-14 113.3 11.2 62 288-366 171-232 (255)
166 cd03296 ABC_CysA_sulfate_impor 99.1 2.8E-10 6.1E-15 114.4 9.0 63 287-366 153-215 (239)
167 PRK09984 phosphonate/organopho 99.1 8.9E-10 1.9E-14 112.4 12.8 62 288-366 170-231 (262)
168 PF07088 GvpD: GvpD gas vesicl 99.1 1.8E-09 4E-14 112.8 15.1 182 205-399 8-214 (484)
169 cd00267 ABC_ATPase ABC (ATP-bi 99.1 4.1E-10 8.8E-15 105.9 9.5 133 204-364 22-156 (157)
170 PRK11144 modC molybdate transp 99.1 3.8E-10 8.3E-15 120.2 10.4 63 287-366 145-207 (352)
171 PRK15112 antimicrobial peptide 99.1 3.8E-10 8.2E-15 115.6 10.0 63 287-366 166-228 (267)
172 PRK13548 hmuV hemin importer A 99.1 5.4E-10 1.2E-14 113.9 11.0 63 287-366 157-219 (258)
173 TIGR03258 PhnT 2-aminoethylpho 99.1 3.3E-10 7.2E-15 120.9 9.8 63 287-366 154-217 (362)
174 COG0444 DppD ABC-type dipeptid 99.1 6.4E-10 1.4E-14 114.4 11.4 66 286-368 169-234 (316)
175 PRK13650 cbiO cobalt transport 99.1 5.1E-10 1.1E-14 115.4 10.9 136 204-366 30-218 (279)
176 PRK13647 cbiO cobalt transport 99.1 4.2E-10 9E-15 115.8 10.2 61 288-366 156-216 (274)
177 PRK09536 btuD corrinoid ABC tr 99.1 3.4E-10 7.4E-15 122.2 9.9 61 288-366 157-217 (402)
178 TIGR01184 ntrCD nitrate transp 99.1 5.3E-10 1.1E-14 112.0 10.6 63 287-366 131-193 (230)
179 cd03300 ABC_PotA_N PotA is an 99.1 4E-10 8.7E-15 112.9 9.7 63 287-366 147-209 (232)
180 PRK13652 cbiO cobalt transport 99.1 5.1E-10 1.1E-14 115.3 10.6 62 288-366 155-216 (277)
181 cd03219 ABC_Mj1267_LivG_branch 99.1 4.5E-10 9.7E-15 112.6 9.9 61 288-366 161-221 (236)
182 TIGR03005 ectoine_ehuA ectoine 99.1 8.3E-10 1.8E-14 111.9 12.0 62 288-366 164-225 (252)
183 PRK10070 glycine betaine trans 99.1 6.6E-10 1.4E-14 120.0 11.8 140 204-366 51-243 (400)
184 PRK11000 maltose/maltodextrin 99.1 3.7E-10 8E-15 121.0 9.8 63 287-366 150-212 (369)
185 PRK10771 thiQ thiamine transpo 99.1 4.6E-10 9.9E-15 112.4 9.8 62 288-366 147-208 (232)
186 cd03235 ABC_Metallic_Cations A 99.1 6.9E-10 1.5E-14 109.5 10.9 59 288-364 150-208 (213)
187 TIGR03265 PhnT2 putative 2-ami 99.1 4.1E-10 8.9E-15 119.9 9.9 62 288-366 152-213 (353)
188 COG1125 OpuBA ABC-type proline 99.1 1E-09 2.2E-14 109.1 11.9 142 204-368 24-216 (309)
189 PRK13643 cbiO cobalt transport 99.1 7.3E-10 1.6E-14 114.8 11.4 61 288-366 162-222 (288)
190 PRK10575 iron-hydroxamate tran 99.1 6.6E-10 1.4E-14 113.6 10.9 62 288-366 165-226 (265)
191 PRK09493 glnQ glutamine ABC tr 99.1 9E-10 2E-14 110.8 11.5 61 288-366 154-214 (240)
192 PRK11629 lolD lipoprotein tran 99.1 1.5E-09 3.2E-14 108.8 12.9 61 288-366 163-223 (233)
193 TIGR02142 modC_ABC molybdenum 99.1 5.7E-10 1.2E-14 119.0 10.5 62 288-366 149-210 (354)
194 PRK10253 iron-enterobactin tra 99.1 7.9E-10 1.7E-14 113.1 11.0 62 288-366 161-222 (265)
195 PRK11432 fbpC ferric transport 99.1 5.1E-10 1.1E-14 119.0 9.9 63 287-366 153-215 (351)
196 PRK13639 cbiO cobalt transport 99.1 9.8E-10 2.1E-14 113.0 11.7 61 288-366 155-215 (275)
197 PRK10418 nikD nickel transport 99.1 2E-09 4.3E-14 109.4 13.7 146 204-366 26-219 (254)
198 PRK15079 oligopeptide ABC tran 99.1 9.7E-10 2.1E-14 116.1 11.7 62 288-366 179-240 (331)
199 PRK04296 thymidine kinase; Pro 99.1 8.5E-10 1.8E-14 107.4 10.4 134 207-363 2-141 (190)
200 PRK09452 potA putrescine/sperm 99.1 5.4E-10 1.2E-14 119.8 9.9 62 288-366 162-223 (375)
201 TIGR03415 ABC_choXWV_ATP choli 99.0 9.6E-10 2.1E-14 118.0 11.7 140 204-366 47-243 (382)
202 TIGR00968 3a0106s01 sulfate AB 99.0 6.1E-10 1.3E-14 112.0 9.6 62 288-366 148-209 (237)
203 PRK13633 cobalt transporter AT 99.0 1.2E-09 2.6E-14 112.7 11.9 61 288-366 162-222 (280)
204 PRK10247 putative ABC transpor 99.0 1.1E-09 2.3E-14 109.4 11.2 58 288-363 155-212 (225)
205 PRK11248 tauB taurine transpor 99.0 6.4E-10 1.4E-14 113.2 9.8 143 204-363 24-204 (255)
206 PRK10619 histidine/lysine/argi 99.0 1.3E-09 2.8E-14 110.9 12.0 61 288-366 170-230 (257)
207 cd03299 ABC_ModC_like Archeal 99.0 6.6E-10 1.4E-14 111.6 9.7 63 287-366 146-208 (235)
208 cd03238 ABC_UvrA The excision 99.0 1.3E-09 2.7E-14 105.0 11.2 132 204-365 18-165 (176)
209 PRK11701 phnK phosphonate C-P 99.0 2.3E-09 4.9E-14 109.2 13.6 62 288-366 169-230 (258)
210 TIGR02769 nickel_nikE nickel i 99.0 1.2E-09 2.6E-14 111.7 11.6 62 288-366 168-229 (265)
211 KOG1433 DNA repair protein RAD 99.0 2.1E-10 4.5E-15 119.3 6.0 197 190-396 96-320 (326)
212 PRK13641 cbiO cobalt transport 99.0 9.5E-10 2.1E-14 113.9 10.9 61 288-366 163-223 (287)
213 COG1123 ATPase components of v 99.0 1.5E-09 3.2E-14 119.2 12.9 66 284-366 168-233 (539)
214 PRK13640 cbiO cobalt transport 99.0 1.1E-09 2.3E-14 113.2 11.2 61 288-366 161-221 (282)
215 PRK11607 potG putrescine trans 99.0 6.2E-10 1.3E-14 119.5 9.8 62 288-366 167-228 (377)
216 PRK13645 cbiO cobalt transport 99.0 8.6E-10 1.9E-14 114.3 10.5 62 288-366 168-229 (289)
217 PRK13648 cbiO cobalt transport 99.0 1.2E-09 2.7E-14 111.8 11.6 61 288-366 160-220 (269)
218 PRK11264 putative amino-acid A 99.0 1.9E-09 4.1E-14 109.1 12.6 61 288-366 162-222 (250)
219 TIGR01257 rim_protein retinal- 99.0 3.9E-10 8.5E-15 140.5 9.1 155 203-381 1961-2163(2272)
220 cd03264 ABC_drug_resistance_li 99.0 1.1E-09 2.3E-14 108.0 10.4 60 288-366 148-207 (211)
221 TIGR02982 heterocyst_DevA ABC 99.0 2.1E-09 4.5E-14 106.8 12.6 60 288-365 159-218 (220)
222 PRK11614 livF leucine/isoleuci 99.0 1E-09 2.2E-14 110.2 10.4 61 288-366 155-215 (237)
223 PRK10851 sulfate/thiosulfate t 99.0 7.8E-10 1.7E-14 117.8 10.1 63 287-366 153-215 (353)
224 PRK13651 cobalt transporter AT 99.0 1.3E-09 2.9E-14 113.8 11.5 61 288-366 183-243 (305)
225 COG3638 ABC-type phosphate/pho 99.0 1.4E-09 3.1E-14 107.0 10.9 141 203-366 26-226 (258)
226 COG4619 ABC-type uncharacteriz 99.0 2.7E-09 5.9E-14 100.0 12.1 139 204-365 26-211 (223)
227 PRK13649 cbiO cobalt transport 99.0 1.2E-09 2.6E-14 112.6 11.0 61 288-366 163-223 (280)
228 PRK11124 artP arginine transpo 99.0 2.2E-09 4.7E-14 108.1 12.5 61 288-366 159-219 (242)
229 COG3840 ThiQ ABC-type thiamine 99.0 9.7E-10 2.1E-14 104.2 9.0 138 204-367 22-209 (231)
230 cd03260 ABC_PstB_phosphate_tra 99.0 2.3E-09 5E-14 106.8 12.4 60 288-366 159-218 (227)
231 TIGR03411 urea_trans_UrtD urea 99.0 1.3E-09 2.9E-14 109.6 10.6 60 288-366 161-220 (242)
232 PRK13631 cbiO cobalt transport 99.0 1.5E-09 3.3E-14 114.1 11.4 61 288-366 194-254 (320)
233 PRK09473 oppD oligopeptide tra 99.0 1.8E-09 3.9E-14 114.0 12.0 62 288-366 179-240 (330)
234 PRK13638 cbiO cobalt transport 99.0 1.4E-09 3E-14 111.6 10.9 61 288-366 154-214 (271)
235 TIGR03608 L_ocin_972_ABC putat 99.0 1.8E-09 3.8E-14 105.9 11.1 55 288-361 152-206 (206)
236 TIGR01186 proV glycine betaine 99.0 9.3E-10 2E-14 117.4 9.8 140 204-366 16-208 (363)
237 PRK09544 znuC high-affinity zi 99.0 2.3E-09 4.9E-14 109.0 12.2 143 204-363 27-196 (251)
238 COG1129 MglA ABC-type sugar tr 99.0 1.3E-09 2.9E-14 118.8 11.0 139 203-366 30-223 (500)
239 PRK10895 lipopolysaccharide AB 99.0 2.1E-09 4.4E-14 108.3 11.7 61 288-366 155-215 (241)
240 PRK10419 nikE nickel transport 99.0 2.3E-09 5E-14 109.9 12.1 63 287-366 168-230 (268)
241 COG1123 ATPase components of v 99.0 1.7E-09 3.7E-14 118.8 11.6 143 203-367 313-509 (539)
242 PRK13632 cbiO cobalt transport 99.0 1.9E-09 4E-14 110.7 11.2 61 288-366 160-220 (271)
243 PRK11022 dppD dipeptide transp 99.0 1.3E-09 2.7E-14 115.0 9.8 62 288-366 171-232 (326)
244 TIGR02323 CP_lyasePhnK phospho 99.0 3.8E-09 8.3E-14 107.1 12.9 62 288-366 166-227 (253)
245 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 3E-09 6.5E-14 106.2 11.8 139 204-366 45-220 (224)
246 PRK13642 cbiO cobalt transport 99.0 1.9E-09 4.1E-14 111.0 10.7 61 288-366 158-218 (277)
247 PRK10938 putative molybdenum t 99.0 2.2E-09 4.7E-14 119.3 11.7 61 288-366 153-213 (490)
248 cd03234 ABCG_White The White s 99.0 3.1E-09 6.8E-14 105.9 11.7 61 288-366 161-222 (226)
249 COG3842 PotA ABC-type spermidi 99.0 1E-09 2.2E-14 115.5 8.3 140 203-366 27-215 (352)
250 PRK13543 cytochrome c biogenes 99.0 2.9E-09 6.4E-14 105.4 11.2 143 203-363 33-212 (214)
251 PRK11231 fecE iron-dicitrate t 99.0 2.4E-09 5.2E-14 108.8 10.7 61 288-366 156-216 (255)
252 TIGR03740 galliderm_ABC gallid 99.0 2.3E-09 4.9E-14 106.7 10.3 145 204-366 23-202 (223)
253 TIGR03771 anch_rpt_ABC anchore 99.0 3E-09 6.5E-14 106.0 11.2 60 287-365 130-189 (223)
254 COG0411 LivG ABC-type branched 99.0 1.2E-09 2.5E-14 108.3 7.9 141 203-366 26-228 (250)
255 TIGR03873 F420-0_ABC_ATP propo 99.0 2.4E-09 5.1E-14 108.9 10.5 61 288-366 155-215 (256)
256 cd03253 ABCC_ATM1_transporter 99.0 2.1E-09 4.5E-14 107.7 9.9 59 288-366 155-213 (236)
257 COG1245 Predicted ATPase, RNas 99.0 4.8E-09 1E-13 111.4 12.9 148 201-365 361-533 (591)
258 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 1.8E-09 4E-14 100.4 8.8 120 204-364 23-143 (144)
259 cd03251 ABCC_MsbA MsbA is an e 99.0 2E-09 4.4E-14 107.6 9.6 59 288-366 156-214 (234)
260 PRK15093 antimicrobial peptide 99.0 6.5E-09 1.4E-13 109.8 13.9 62 288-366 176-237 (330)
261 TIGR00972 3a0107s01c2 phosphat 99.0 4E-09 8.7E-14 106.6 11.6 60 288-366 162-221 (247)
262 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.0 2.5E-09 5.4E-14 107.3 9.7 59 288-366 157-215 (238)
263 cd03252 ABCC_Hemolysin The ABC 99.0 2.3E-09 5.1E-14 107.5 9.5 59 288-366 156-214 (237)
264 PRK15439 autoinducer 2 ABC tra 99.0 2.8E-09 6E-14 119.1 10.9 62 287-366 157-218 (510)
265 PRK13547 hmuV hemin importer A 98.9 5.4E-09 1.2E-13 107.5 12.2 63 287-366 171-233 (272)
266 COG0410 LivF ABC-type branched 98.9 4.8E-09 1E-13 103.2 11.0 140 204-366 26-215 (237)
267 cd03223 ABCD_peroxisomal_ALDP 98.9 4.8E-09 1E-13 99.9 10.4 135 204-365 24-164 (166)
268 PRK13644 cbiO cobalt transport 98.9 4.9E-09 1.1E-13 107.9 11.3 60 288-366 154-213 (274)
269 cd03254 ABCC_Glucan_exporter_l 98.9 4.2E-09 9E-14 105.1 10.4 59 288-366 157-215 (229)
270 cd03369 ABCC_NFT1 Domain 2 of 98.9 4.6E-09 9.9E-14 103.3 10.5 137 204-366 31-201 (207)
271 TIGR03269 met_CoM_red_A2 methy 98.9 7.1E-09 1.5E-13 116.0 13.4 62 288-366 186-247 (520)
272 cd03236 ABC_RNaseL_inhibitor_d 98.9 4.5E-09 9.7E-14 107.1 10.8 59 288-364 157-215 (255)
273 COG4598 HisP ABC-type histidin 98.9 9.8E-09 2.1E-13 97.2 12.1 140 204-367 29-231 (256)
274 PRK14267 phosphate ABC transpo 98.9 5.5E-09 1.2E-13 105.9 11.4 60 288-366 167-226 (253)
275 PRK10762 D-ribose transporter 98.9 4.1E-09 8.9E-14 117.5 11.3 61 288-366 159-219 (501)
276 PRK14242 phosphate transporter 98.9 6.9E-09 1.5E-13 105.2 12.0 60 288-366 167-226 (253)
277 cd03231 ABC_CcmA_heme_exporter 98.9 6.3E-09 1.4E-13 102.0 11.3 56 288-361 143-198 (201)
278 PRK10261 glutathione transport 98.9 5E-09 1.1E-13 119.7 12.1 63 287-366 480-542 (623)
279 COG3839 MalK ABC-type sugar tr 98.9 2.4E-09 5.1E-14 112.2 8.4 139 204-367 26-213 (338)
280 PRK03695 vitamin B12-transport 98.9 5.2E-09 1.1E-13 106.0 10.7 61 288-366 151-211 (248)
281 cd03244 ABCC_MRP_domain2 Domai 98.9 4.6E-09 1E-13 104.2 10.0 59 288-366 157-215 (221)
282 PRK14235 phosphate transporter 98.9 8E-09 1.7E-13 105.8 12.0 60 288-366 181-240 (267)
283 TIGR01257 rim_protein retinal- 98.9 2.2E-09 4.9E-14 133.9 9.2 153 203-380 952-1152(2272)
284 TIGR02324 CP_lyasePhnL phospho 98.9 6.9E-09 1.5E-13 103.2 11.0 57 288-362 167-223 (224)
285 COG4559 ABC-type hemin transpo 98.9 1.1E-08 2.4E-13 99.3 11.8 140 204-366 24-219 (259)
286 PRK13538 cytochrome c biogenes 98.9 8.5E-09 1.8E-13 101.2 11.3 56 288-361 147-202 (204)
287 PRK14248 phosphate ABC transpo 98.9 9E-09 1.9E-13 105.4 11.8 61 287-366 181-241 (268)
288 PRK14274 phosphate ABC transpo 98.9 9.8E-09 2.1E-13 104.6 11.8 60 288-366 173-232 (259)
289 COG4604 CeuD ABC-type enteroch 98.9 1.7E-08 3.8E-13 96.9 12.5 141 203-366 23-214 (252)
290 PRK09700 D-allose transporter 98.9 4.6E-09 1E-13 117.3 10.2 61 288-366 163-223 (510)
291 cd03248 ABCC_TAP TAP, the Tran 98.9 4.3E-09 9.4E-14 104.8 9.0 58 288-365 168-225 (226)
292 cd03245 ABCC_bacteriocin_expor 98.9 7.4E-09 1.6E-13 102.6 10.5 59 288-366 158-216 (220)
293 PRK14253 phosphate ABC transpo 98.9 1.1E-08 2.5E-13 103.4 12.0 60 288-366 163-222 (249)
294 PRK14247 phosphate ABC transpo 98.9 6.7E-09 1.5E-13 105.1 10.3 60 288-366 164-223 (250)
295 PRK14273 phosphate ABC transpo 98.9 1E-08 2.2E-13 104.1 11.6 60 288-366 168-227 (254)
296 PRK14249 phosphate ABC transpo 98.9 8.3E-09 1.8E-13 104.5 10.9 60 288-366 165-224 (251)
297 TIGR01978 sufC FeS assembly AT 98.9 6.4E-09 1.4E-13 104.6 10.0 62 287-366 161-223 (243)
298 PRK15134 microcin C ABC transp 98.9 1.1E-08 2.3E-13 114.9 12.8 63 287-366 173-235 (529)
299 PRK14258 phosphate ABC transpo 98.9 9.2E-09 2E-13 105.0 11.2 59 288-363 168-226 (261)
300 PRK14240 phosphate transporter 98.9 9.5E-09 2.1E-13 104.0 11.2 60 288-366 164-223 (250)
301 TIGR01189 ccmA heme ABC export 98.9 9.9E-09 2.1E-13 100.2 10.9 43 288-340 145-187 (198)
302 PRK15056 manganese/iron transp 98.9 7.2E-09 1.6E-13 106.4 10.4 59 288-365 160-218 (272)
303 PRK14270 phosphate ABC transpo 98.9 1.2E-08 2.7E-13 103.3 11.9 60 288-366 165-224 (251)
304 PRK14262 phosphate ABC transpo 98.9 1.2E-08 2.5E-13 103.3 11.7 60 288-366 164-223 (250)
305 COG4172 ABC-type uncharacteriz 98.9 1.1E-08 2.4E-13 107.4 11.5 140 203-366 309-505 (534)
306 PRK14239 phosphate transporter 98.9 1.2E-08 2.6E-13 103.3 11.7 61 287-366 165-225 (252)
307 PRK14245 phosphate ABC transpo 98.9 1.5E-08 3.4E-13 102.5 12.4 60 288-366 164-223 (250)
308 PRK14238 phosphate transporter 98.9 1.4E-08 2.9E-13 104.4 12.1 60 288-366 185-244 (271)
309 PRK14268 phosphate ABC transpo 98.9 1.2E-08 2.6E-13 103.9 11.6 60 288-366 172-231 (258)
310 PRK10744 pstB phosphate transp 98.9 1.1E-08 2.4E-13 104.3 11.2 60 288-366 174-233 (260)
311 PRK14269 phosphate ABC transpo 98.9 9.2E-09 2E-13 104.0 10.4 60 288-366 160-219 (246)
312 PRK15439 autoinducer 2 ABC tra 98.9 9.8E-09 2.1E-13 114.7 11.5 62 287-366 420-481 (510)
313 PRK13409 putative ATPase RIL; 98.9 1.2E-08 2.6E-13 115.7 12.3 146 201-363 359-529 (590)
314 PRK13546 teichoic acids export 98.9 1.1E-08 2.5E-13 104.6 11.1 145 204-366 47-221 (264)
315 PRK10261 glutathione transport 98.9 8.1E-09 1.8E-13 118.0 11.0 63 287-366 185-247 (623)
316 cd03250 ABCC_MRP_domain1 Domai 98.9 8.5E-09 1.9E-13 101.1 9.5 142 204-364 28-203 (204)
317 PRK14256 phosphate ABC transpo 98.9 1.3E-08 2.8E-13 103.3 11.0 60 288-366 166-225 (252)
318 PRK14251 phosphate ABC transpo 98.9 1.6E-08 3.4E-13 102.5 11.6 61 287-366 164-224 (251)
319 PRK10762 D-ribose transporter 98.9 1.1E-08 2.5E-13 113.9 11.5 62 287-366 412-473 (501)
320 PRK13549 xylose transporter AT 98.9 7.9E-09 1.7E-13 115.3 10.2 61 288-366 161-221 (506)
321 cd03289 ABCC_CFTR2 The CFTR su 98.9 1.4E-08 3E-13 104.6 11.2 60 288-367 156-215 (275)
322 TIGR03269 met_CoM_red_A2 methy 98.9 1.8E-08 4E-13 112.7 13.0 62 288-366 445-506 (520)
323 COG4148 ModC ABC-type molybdat 98.9 5.8E-09 1.3E-13 104.9 7.9 140 208-366 25-207 (352)
324 PRK14263 phosphate ABC transpo 98.8 1.7E-08 3.6E-13 103.2 11.5 56 288-362 167-222 (261)
325 PRK11288 araG L-arabinose tran 98.8 1.1E-08 2.4E-13 114.0 10.9 62 287-366 157-218 (501)
326 PRK15134 microcin C ABC transp 98.8 1.6E-08 3.6E-13 113.4 12.3 63 287-366 442-504 (529)
327 PRK14244 phosphate ABC transpo 98.8 2.5E-08 5.4E-13 101.0 12.5 60 288-366 167-226 (251)
328 PRK13539 cytochrome c biogenes 98.8 2.2E-08 4.8E-13 98.6 11.8 56 288-363 145-200 (207)
329 PRK14272 phosphate ABC transpo 98.8 1.5E-08 3.2E-13 102.6 10.8 60 288-366 166-225 (252)
330 PRK14261 phosphate ABC transpo 98.8 1.6E-08 3.6E-13 102.5 10.9 60 288-366 167-226 (253)
331 PRK13545 tagH teichoic acids e 98.8 1.2E-08 2.6E-13 112.5 10.6 140 203-366 46-221 (549)
332 cd03290 ABCC_SUR1_N The SUR do 98.8 1.9E-08 4.2E-13 99.6 11.1 59 288-364 158-217 (218)
333 PRK10982 galactose/methyl gala 98.8 1.3E-08 2.7E-13 113.2 10.9 62 287-366 151-212 (491)
334 PRK09700 D-allose transporter 98.8 1.8E-08 4E-13 112.4 12.1 61 288-366 427-487 (510)
335 PRK11176 lipid transporter ATP 98.8 1.9E-08 4E-13 114.1 11.9 138 203-366 365-556 (582)
336 PRK14271 phosphate ABC transpo 98.8 2.4E-08 5.3E-13 102.8 11.7 60 288-366 181-240 (276)
337 PRK14259 phosphate ABC transpo 98.8 1.7E-08 3.8E-13 103.5 10.4 58 288-364 172-229 (269)
338 smart00382 AAA ATPases associa 98.8 4.3E-08 9.3E-13 87.4 11.7 139 207-362 2-145 (148)
339 PRK14275 phosphate ABC transpo 98.8 2.7E-08 5.9E-13 103.0 11.9 60 288-366 200-259 (286)
340 PRK14237 phosphate transporter 98.8 2.7E-08 5.9E-13 101.9 11.6 60 288-366 181-240 (267)
341 PRK14236 phosphate transporter 98.8 2.7E-08 5.9E-13 102.2 11.5 60 288-366 186-245 (272)
342 PRK13409 putative ATPase RIL; 98.8 2.3E-08 5E-13 113.4 11.9 59 287-364 229-287 (590)
343 TIGR01166 cbiO cobalt transpor 98.8 2.5E-08 5.5E-13 96.7 10.6 44 288-341 145-188 (190)
344 COG2274 SunT ABC-type bacterio 98.8 1.6E-08 3.4E-13 116.1 10.5 136 203-367 495-686 (709)
345 PRK14266 phosphate ABC transpo 98.8 4.1E-08 9E-13 99.3 12.5 60 288-366 164-223 (250)
346 PRK13549 xylose transporter AT 98.8 2.4E-08 5.1E-13 111.5 11.7 61 288-366 423-483 (506)
347 PRK14243 phosphate transporter 98.8 3.1E-08 6.8E-13 101.3 11.6 57 288-363 169-225 (264)
348 COG4167 SapF ABC-type antimicr 98.8 3.2E-08 7E-13 94.0 10.6 141 204-366 36-228 (267)
349 PRK15177 Vi polysaccharide exp 98.8 1.1E-08 2.3E-13 101.5 7.8 140 204-367 10-182 (213)
350 PRK13540 cytochrome c biogenes 98.8 3.2E-08 7E-13 96.8 11.1 122 204-341 24-188 (200)
351 PRK14255 phosphate ABC transpo 98.8 2.8E-08 6.2E-13 100.6 11.1 60 288-366 166-225 (252)
352 PRK14252 phosphate ABC transpo 98.8 3.3E-08 7.2E-13 101.1 11.5 60 288-366 179-238 (265)
353 TIGR03797 NHPM_micro_ABC2 NHPM 98.8 2.4E-08 5.3E-13 115.4 11.8 133 203-366 475-662 (686)
354 PRK10982 galactose/methyl gala 98.8 3.5E-08 7.6E-13 109.7 12.5 62 287-366 408-469 (491)
355 PRK10636 putative ABC transpor 98.8 3E-08 6.5E-13 113.7 11.9 142 203-365 334-504 (638)
356 CHL00131 ycf16 sulfate ABC tra 98.8 2.3E-08 5E-13 101.3 9.7 62 287-366 168-230 (252)
357 TIGR02633 xylG D-xylose ABC tr 98.8 2.6E-08 5.7E-13 111.0 10.9 62 287-366 158-219 (500)
358 PRK14246 phosphate ABC transpo 98.8 3.6E-08 7.7E-13 100.5 11.0 60 288-366 171-230 (257)
359 TIGR01187 potA spermidine/putr 98.8 1.4E-08 3E-13 107.1 8.2 62 288-366 118-179 (325)
360 PRK15064 ABC transporter ATP-b 98.8 4.3E-08 9.2E-13 110.1 12.5 59 287-366 172-230 (530)
361 PRK09580 sufC cysteine desulfu 98.8 7.1E-08 1.5E-12 97.4 13.0 62 287-366 162-224 (248)
362 PRK11288 araG L-arabinose tran 98.8 2.9E-08 6.3E-13 110.7 11.1 60 288-365 414-473 (501)
363 TIGR02633 xylG D-xylose ABC tr 98.8 2.4E-08 5.3E-13 111.2 10.4 60 288-365 421-480 (500)
364 PRK14265 phosphate ABC transpo 98.8 4.4E-08 9.6E-13 100.8 11.5 57 288-363 179-235 (274)
365 PRK14260 phosphate ABC transpo 98.8 4.6E-08 1E-12 99.7 11.3 57 288-363 168-224 (259)
366 PRK10790 putative multidrug tr 98.8 2.8E-08 6E-13 113.0 10.5 136 203-367 363-553 (592)
367 PRK14241 phosphate transporter 98.8 4.5E-08 9.9E-13 99.6 10.9 57 288-363 166-222 (258)
368 PRK14254 phosphate ABC transpo 98.7 4.9E-08 1.1E-12 101.1 11.0 61 287-366 197-258 (285)
369 PLN03211 ABC transporter G-25; 98.7 3.9E-08 8.5E-13 112.9 11.3 62 288-366 224-285 (659)
370 TIGR03796 NHPM_micro_ABC1 NHPM 98.7 3.2E-08 7E-13 114.8 10.6 133 203-366 501-689 (710)
371 cd03288 ABCC_SUR2 The SUR doma 98.7 3.8E-08 8.3E-13 100.2 9.8 59 288-366 174-232 (257)
372 TIGR01193 bacteriocin_ABC ABC- 98.7 5.6E-08 1.2E-12 112.8 12.4 134 203-366 496-686 (708)
373 PRK10522 multidrug transporter 98.7 3.4E-08 7.3E-13 111.3 10.2 146 203-366 345-527 (547)
374 PRK11174 cysteine/glutathione 98.7 4.2E-08 9.1E-13 111.4 10.8 134 203-366 372-561 (588)
375 TIGR02203 MsbA_lipidA lipid A 98.7 5.2E-08 1.1E-12 110.2 11.5 59 288-366 487-545 (571)
376 PRK10636 putative ABC transpor 98.7 6.9E-08 1.5E-12 110.7 12.6 60 286-366 165-224 (638)
377 PRK10938 putative molybdenum t 98.7 5.3E-08 1.1E-12 108.3 10.9 62 288-366 419-481 (490)
378 cd03291 ABCC_CFTR1 The CFTR su 98.7 1.3E-07 2.9E-12 97.7 13.1 144 204-366 60-236 (282)
379 TIGR02204 MsbA_rel ABC transpo 98.7 7.8E-08 1.7E-12 108.9 12.2 135 203-366 362-552 (576)
380 PRK15064 ABC transporter ATP-b 98.7 8.2E-08 1.8E-12 107.8 12.2 142 203-365 341-512 (530)
381 PLN03073 ABC transporter F fam 98.7 7.8E-08 1.7E-12 111.2 12.0 59 287-366 361-419 (718)
382 TIGR01194 cyc_pep_trnsptr cycl 98.7 6E-08 1.3E-12 109.5 10.8 137 203-366 364-548 (555)
383 COG2884 FtsE Predicted ATPase 98.7 1.1E-07 2.3E-12 91.1 10.6 141 203-366 24-215 (223)
384 cd00544 CobU Adenosylcobinamid 98.7 3.2E-07 6.9E-12 87.8 14.1 146 209-364 1-164 (169)
385 PRK13541 cytochrome c biogenes 98.7 1.1E-07 2.5E-12 92.6 11.3 31 204-234 23-53 (195)
386 COG0488 Uup ATPase components 98.7 6.6E-08 1.4E-12 107.7 10.7 143 203-366 25-228 (530)
387 TIGR03375 type_I_sec_LssB type 98.7 6E-08 1.3E-12 112.4 10.8 135 203-366 487-677 (694)
388 KOG0061 Transporter, ABC super 98.7 1.7E-08 3.8E-13 114.7 6.1 181 200-407 49-281 (613)
389 COG4175 ProV ABC-type proline/ 98.7 1.9E-07 4E-12 95.7 12.8 140 204-366 51-243 (386)
390 PRK11147 ABC transporter ATPas 98.7 9.8E-08 2.1E-12 109.5 12.2 142 203-365 341-515 (635)
391 PRK13657 cyclic beta-1,2-gluca 98.7 7.6E-08 1.6E-12 109.4 10.9 59 288-366 489-547 (588)
392 COG0488 Uup ATPase components 98.7 1.2E-07 2.7E-12 105.5 12.2 141 202-363 343-511 (530)
393 TIGR01846 type_I_sec_HlyB type 98.7 9.7E-08 2.1E-12 110.6 11.8 135 203-366 479-669 (694)
394 PRK14257 phosphate ABC transpo 98.7 1.3E-07 2.9E-12 99.8 11.8 60 288-366 243-302 (329)
395 PLN03073 ABC transporter F fam 98.7 1.3E-07 2.9E-12 109.3 12.8 142 203-365 531-701 (718)
396 PRK11147 ABC transporter ATPas 98.7 1E-07 2.3E-12 109.2 11.8 59 287-366 173-231 (635)
397 PRK11160 cysteine/glutathione 98.7 9.5E-08 2.1E-12 108.3 11.2 135 203-366 362-551 (574)
398 PRK11819 putative ABC transpor 98.7 1.8E-07 3.9E-12 105.7 13.0 60 286-366 179-238 (556)
399 COG4618 ArpD ABC-type protease 98.7 8.5E-08 1.8E-12 103.4 9.7 69 288-385 490-558 (580)
400 COG4181 Predicted ABC-type tra 98.6 1.7E-07 3.6E-12 88.4 10.3 139 204-366 33-224 (228)
401 TIGR00955 3a01204 The Eye Pigm 98.6 1.5E-07 3.3E-12 107.5 12.4 62 288-366 184-245 (617)
402 COG4987 CydC ABC-type transpor 98.6 1.6E-07 3.5E-12 102.0 11.7 139 203-366 360-550 (573)
403 PRK14264 phosphate ABC transpo 98.6 2.1E-07 4.6E-12 97.3 12.4 60 288-366 218-278 (305)
404 PRK10789 putative multidrug tr 98.6 1.1E-07 2.3E-12 107.8 10.9 59 288-366 469-527 (569)
405 TIGR01192 chvA glucan exporter 98.6 9.9E-08 2.1E-12 108.4 10.5 59 288-366 489-547 (585)
406 COG1119 ModF ABC-type molybden 98.6 1.7E-07 3.6E-12 93.2 10.6 63 287-366 188-251 (257)
407 COG1117 PstB ABC-type phosphat 98.6 1.1E-07 2.4E-12 92.5 8.8 142 202-366 28-226 (253)
408 COG0396 sufC Cysteine desulfur 98.6 2.5E-07 5.5E-12 91.1 11.2 62 286-365 160-222 (251)
409 COG4988 CydD ABC-type transpor 98.6 2.2E-07 4.9E-12 102.1 12.1 143 204-366 344-532 (559)
410 TIGR01842 type_I_sec_PrtD type 98.6 1.3E-07 2.9E-12 106.4 10.7 60 288-366 472-531 (544)
411 COG3480 SdrC Predicted secrete 98.6 9.4E-08 2E-12 97.3 8.3 109 472-583 220-342 (342)
412 COG4172 ABC-type uncharacteriz 98.6 3E-07 6.6E-12 96.7 11.7 145 204-366 33-236 (534)
413 TIGR00958 3a01208 Conjugate Tr 98.6 1.8E-07 4E-12 108.6 11.2 32 203-234 503-534 (711)
414 COG4107 PhnK ABC-type phosphon 98.6 3.4E-07 7.4E-12 86.4 10.8 141 204-366 29-230 (258)
415 KOG0059 Lipid exporter ABCA1 a 98.6 5.4E-08 1.2E-12 115.3 6.6 159 200-382 584-792 (885)
416 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 2.5E-07 5.3E-12 104.5 11.5 141 203-364 344-516 (552)
417 COG1132 MdlB ABC-type multidru 98.6 2.9E-07 6.4E-12 104.1 12.2 134 204-366 352-541 (567)
418 PRK10535 macrolide transporter 98.6 3.9E-07 8.5E-12 104.7 12.7 61 288-367 162-222 (648)
419 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 3.9E-07 8.5E-12 102.8 12.2 58 287-365 178-235 (552)
420 cd03270 ABC_UvrA_I The excisio 98.6 1.1E-06 2.3E-11 88.0 13.8 56 289-363 158-213 (226)
421 PLN03232 ABC transporter C fam 98.6 2.9E-07 6.3E-12 114.7 11.9 136 203-367 1258-1448(1495)
422 PF13479 AAA_24: AAA domain 98.5 5.4E-07 1.2E-11 89.4 11.5 138 207-362 3-173 (213)
423 cd03283 ABC_MutS-like MutS-lik 98.5 3.5E-07 7.5E-12 89.8 10.0 120 206-342 24-150 (199)
424 PRK11819 putative ABC transpor 98.5 4E-07 8.6E-12 102.9 11.8 140 203-363 346-517 (556)
425 TIGR02857 CydD thiol reductant 98.5 1.8E-07 3.9E-12 105.0 8.9 32 203-234 344-375 (529)
426 PLN03130 ABC transporter C fam 98.5 3.2E-07 7E-12 114.7 11.7 135 203-366 1261-1450(1622)
427 cd03280 ABC_MutS2 MutS2 homolo 98.5 1E-07 2.2E-12 93.5 5.5 134 206-365 26-167 (200)
428 KOG0055 Multidrug/pheromone ex 98.5 7.4E-07 1.6E-11 105.4 13.5 138 203-366 375-565 (1228)
429 cd03272 ABC_SMC3_euk Eukaryoti 98.5 1.2E-06 2.6E-11 88.1 13.2 56 288-363 180-235 (243)
430 COG4615 PvdE ABC-type sideroph 98.5 8.5E-08 1.8E-12 100.5 4.9 138 203-366 345-526 (546)
431 TIGR00956 3a01205 Pleiotropic 98.5 3.2E-07 7E-12 113.4 10.6 63 288-366 227-289 (1394)
432 cd03275 ABC_SMC1_euk Eukaryoti 98.5 1.9E-06 4.2E-11 87.3 13.6 62 288-368 177-238 (247)
433 cd03227 ABC_Class2 ABC-type Cl 98.5 1.2E-06 2.6E-11 83.0 11.1 125 207-363 21-155 (162)
434 COG4525 TauB ABC-type taurine 98.5 1.7E-06 3.6E-11 83.3 12.0 146 203-365 27-210 (259)
435 TIGR00957 MRP_assoc_pro multi 98.5 6.5E-07 1.4E-11 111.8 11.9 135 203-366 1308-1497(1522)
436 cd03240 ABC_Rad50 The catalyti 98.5 3.4E-06 7.3E-11 83.1 14.6 62 286-365 137-199 (204)
437 cd03278 ABC_SMC_barmotin Barmo 98.5 1.5E-06 3.3E-11 85.2 12.0 58 288-365 135-192 (197)
438 TIGR01271 CFTR_protein cystic 98.5 7.5E-07 1.6E-11 111.0 12.0 135 203-367 1241-1430(1490)
439 PLN03140 ABC transporter G fam 98.5 5.4E-07 1.2E-11 111.4 10.6 63 288-366 354-416 (1470)
440 TIGR02868 CydC thiol reductant 98.5 7E-07 1.5E-11 100.2 10.7 32 203-234 357-388 (529)
441 PRK05800 cobU adenosylcobinami 98.5 3.8E-06 8.1E-11 80.5 14.1 146 208-364 2-164 (170)
442 KOG0058 Peptide exporter, ABC 98.5 1.1E-06 2.5E-11 98.6 12.0 33 203-235 490-522 (716)
443 KOG0062 ATPase component of AB 98.5 8.7E-08 1.9E-12 103.4 3.1 142 204-366 103-273 (582)
444 TIGR00954 3a01203 Peroxysomal 98.4 1.4E-06 2.9E-11 100.5 12.8 140 203-364 474-654 (659)
445 PTZ00265 multidrug resistance 98.4 1E-06 2.2E-11 109.2 12.5 59 288-364 597-655 (1466)
446 PLN03140 ABC transporter G fam 98.4 9.7E-07 2.1E-11 109.2 12.1 61 288-365 1037-1098(1470)
447 COG2956 Predicted N-acetylgluc 98.4 5.2E-08 1.1E-12 99.5 0.8 35 110-144 349-383 (389)
448 KOG0057 Mitochondrial Fe/S clu 98.4 1.9E-06 4E-11 94.0 12.7 139 202-367 373-564 (591)
449 COG1137 YhbG ABC-type (unclass 98.4 1.3E-07 2.8E-12 91.2 3.5 139 203-366 26-217 (243)
450 PF05621 TniB: Bacterial TniB 98.4 1.8E-06 3.9E-11 88.9 11.5 120 209-337 63-187 (302)
451 TIGR00956 3a01205 Pleiotropic 98.4 1.1E-06 2.3E-11 108.8 11.6 60 288-364 919-979 (1394)
452 cd03271 ABC_UvrA_II The excisi 98.4 4.3E-06 9.4E-11 85.5 14.1 56 288-362 190-245 (261)
453 COG1101 PhnK ABC-type uncharac 98.4 1.6E-06 3.4E-11 84.7 10.0 140 203-366 28-227 (263)
454 PTZ00265 multidrug resistance 98.4 1.1E-06 2.5E-11 108.9 11.5 58 288-363 1376-1433(1466)
455 PTZ00243 ABC transporter; Prov 98.4 1.1E-06 2.5E-11 109.6 11.6 135 204-367 1333-1523(1560)
456 COG4133 CcmA ABC-type transpor 98.4 1.2E-06 2.7E-11 83.8 9.0 31 204-234 25-55 (209)
457 TIGR01618 phage_P_loop phage n 98.4 3.8E-06 8.3E-11 83.6 13.0 138 208-362 13-181 (220)
458 cd03279 ABC_sbcCD SbcCD and ot 98.4 3E-06 6.5E-11 83.9 11.7 61 287-365 150-210 (213)
459 COG4161 ArtP ABC-type arginine 98.4 7.1E-06 1.5E-10 76.8 13.2 62 287-366 158-219 (242)
460 COG4674 Uncharacterized ABC-ty 98.4 4.9E-07 1.1E-11 87.0 5.6 138 204-366 28-224 (249)
461 TIGR02858 spore_III_AA stage I 98.4 2.1E-06 4.6E-11 88.1 10.5 144 194-364 100-258 (270)
462 cd03243 ABC_MutS_homologs The 98.3 6.5E-07 1.4E-11 87.8 6.2 119 206-340 28-151 (202)
463 cd03276 ABC_SMC6_euk Eukaryoti 98.3 1E-05 2.2E-10 79.4 14.1 60 286-363 129-190 (198)
464 PF00308 Bac_DnaA: Bacterial d 98.3 1.1E-05 2.4E-10 80.4 14.1 107 208-341 35-141 (219)
465 cd00009 AAA The AAA+ (ATPases 98.3 8.1E-06 1.8E-10 73.4 11.8 109 206-340 18-130 (151)
466 COG4136 ABC-type uncharacteriz 98.3 6E-06 1.3E-10 76.4 10.8 31 204-234 25-55 (213)
467 PF13401 AAA_22: AAA domain; P 98.3 1.5E-06 3.4E-11 78.2 6.9 121 206-340 3-126 (131)
468 KOG2355 Predicted ABC-type tra 98.3 7E-06 1.5E-10 79.6 11.5 147 203-366 36-226 (291)
469 PRK12377 putative replication 98.3 5.6E-06 1.2E-10 84.0 11.5 106 208-341 102-207 (248)
470 PF13173 AAA_14: AAA domain 98.3 6.2E-06 1.3E-10 74.9 10.5 97 207-340 2-99 (128)
471 COG2401 ABC-type ATPase fused 98.2 5E-06 1.1E-10 88.0 10.1 146 203-365 405-586 (593)
472 PRK07952 DNA replication prote 98.2 8.3E-06 1.8E-10 82.6 11.5 129 208-363 100-233 (244)
473 PF01695 IstB_IS21: IstB-like 98.2 1.9E-06 4.2E-11 83.1 6.5 107 205-341 45-151 (178)
474 PRK12724 flagellar biosynthesi 98.2 1.1E-05 2.4E-10 87.1 12.6 86 204-298 220-309 (432)
475 PLN03232 ABC transporter C fam 98.2 4.1E-06 8.9E-11 104.6 10.8 144 204-366 640-817 (1495)
476 PRK06921 hypothetical protein; 98.2 8.8E-06 1.9E-10 83.5 11.1 132 207-364 117-254 (266)
477 PRK08181 transposase; Validate 98.2 8.1E-06 1.8E-10 83.8 10.4 108 205-342 104-211 (269)
478 PF00004 AAA: ATPase family as 98.2 7.2E-06 1.6E-10 73.6 8.9 105 210-339 1-111 (132)
479 PRK06893 DNA replication initi 98.2 9.5E-06 2.1E-10 81.4 10.5 95 208-340 40-134 (229)
480 PLN03130 ABC transporter C fam 98.2 7.3E-06 1.6E-10 102.8 11.7 144 203-366 639-817 (1622)
481 PRK09183 transposase/IS protei 98.2 1.1E-05 2.4E-10 82.4 10.9 109 204-341 99-207 (259)
482 PF00005 ABC_tran: ABC transpo 98.2 1.8E-06 3.8E-11 78.8 4.2 31 204-234 8-38 (137)
483 COG4778 PhnL ABC-type phosphon 98.2 1.2E-05 2.5E-10 76.1 9.5 137 204-363 34-227 (235)
484 COG1245 Predicted ATPase, RNas 98.1 1.2E-05 2.5E-10 86.1 10.7 136 204-365 97-290 (591)
485 cd03285 ABC_MSH2_euk MutS2 hom 98.1 2.7E-06 5.9E-11 85.0 5.7 133 205-363 28-167 (222)
486 COG4178 ABC-type uncharacteriz 98.1 1.1E-05 2.3E-10 90.3 11.0 140 203-364 415-589 (604)
487 TIGR01271 CFTR_protein cystic 98.1 8E-06 1.7E-10 102.0 11.0 142 204-366 449-625 (1490)
488 TIGR00957 MRP_assoc_pro multi 98.1 6.3E-06 1.4E-10 103.1 10.0 145 203-366 660-839 (1522)
489 PTZ00454 26S protease regulato 98.1 1.1E-05 2.4E-10 87.3 10.5 116 203-340 175-294 (398)
490 KOG0054 Multidrug resistance-a 98.1 1.8E-05 3.9E-10 95.8 13.0 149 194-368 1150-1353(1381)
491 PTZ00243 ABC transporter; Prov 98.1 6.9E-06 1.5E-10 102.8 9.8 144 204-366 683-859 (1560)
492 PRK08727 hypothetical protein; 98.1 1.6E-05 3.6E-10 79.9 10.3 96 207-340 41-136 (233)
493 PRK08116 hypothetical protein; 98.1 2.8E-05 6E-10 79.9 11.9 108 207-340 114-221 (268)
494 cd03239 ABC_SMC_head The struc 98.1 1.9E-05 4.1E-10 76.2 9.7 58 287-363 115-172 (178)
495 cd01130 VirB11-like_ATPase Typ 98.1 1.2E-05 2.6E-10 77.9 8.4 143 194-363 12-174 (186)
496 COG1222 RPT1 ATP-dependent 26S 98.1 1.8E-05 3.8E-10 82.7 9.9 123 193-339 173-299 (406)
497 COG3854 SpoIIIAA ncharacterize 98.1 3.1E-05 6.6E-10 76.5 11.0 113 205-344 134-257 (308)
498 PRK06526 transposase; Provisio 98.1 1.4E-05 3.1E-10 81.4 9.0 107 205-341 96-202 (254)
499 cd01131 PilT Pilus retraction 98.1 2.4E-05 5.3E-10 76.6 10.3 108 209-341 3-110 (198)
500 PRK08939 primosomal protein Dn 98.1 3.8E-05 8.3E-10 80.4 12.3 107 207-341 156-262 (306)
No 1
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-111 Score=870.15 Aligned_cols=447 Identities=47% Similarity=0.786 Sum_probs=413.3
Q ss_pred CceeECCCCCCCCccceecCCccccccccccccccCCCCCC--ccccccCCCCCCCcCceecccccccccccccccccCC
Q 007957 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP--VVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190 (583)
Q Consensus 113 ~~~~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~Ri~t~G 190 (583)
|+.|+|++|||.++||+||||+|++|||++|+....+.... .....+.. ....++.++.++... ...|++| |
T Consensus 5 ~t~f~C~~CG~~s~KW~GkCp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~---~~~Ri~t-g 78 (456)
T COG1066 5 KTAFVCQECGYVSPKWLGKCPACGAWNTLVEEVLAASPGGAPNKRRSGKAG--SEPSKVLKLSDIELE---EEPRIST-G 78 (456)
T ss_pred ccEEEcccCCCCCccccccCCCCCCccceEEeecccccccccccccccccc--CCcccceeeccceee---ecccccC-C
Confidence 58999999999999999999999999999998643221110 01111111 011345678777754 3579998 8
Q ss_pred CChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccc
Q 007957 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELF 270 (583)
Q Consensus 191 i~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~ 270 (583)
+ .||||+||||+++|++++|+|+||+|||||++|++..++.. ++|||+|+|||..|++.|++|++++.++++
T Consensus 79 ~--~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~------~~vLYVsGEES~~QiklRA~RL~~~~~~l~ 150 (456)
T COG1066 79 I--EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR------GKVLYVSGEESLQQIKLRADRLGLPTNNLY 150 (456)
T ss_pred h--HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc------CcEEEEeCCcCHHHHHHHHHHhCCCccceE
Confidence 8 99999999999999999999999999999999999999974 389999999999999999999999999999
Q ss_pred cCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccc
Q 007957 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350 (583)
Q Consensus 271 i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~ 350 (583)
++.++++++|++.+++.+|+++||||||++|.++.++.+|+..|+|+++..|+++||++|+++|+++|+||+|.++||+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrv 230 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRV 230 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCce
Q 007957 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRS 430 (583)
Q Consensus 351 Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~ 430 (583)
+|||+|+|++|++++...+|.||.+|||||+++|+++|+|++.||.++.|||++|++++.. ..+|+++.++++|+||
T Consensus 231 LEHmVDtVlyFEGd~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~---~~~GS~v~~~~EGtRp 307 (456)
T COG1066 231 LEHMVDTVLYFEGDRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGE---QTPGSAVVVVMEGTRP 307 (456)
T ss_pred eeeeeeEEEEEeccCCCceeeeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCC---CCCCcEEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999984 4899999999999999
Q ss_pred eEEEEEEEeecC--CCceEEEechhHHHHHHHHHHHHHhcCCCcccccEEEEecCCcccccccccHHHHHHHHHcccCCC
Q 007957 431 FLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508 (583)
Q Consensus 431 ~lVEvqalv~~~--~~p~~~~~G~~~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~ 508 (583)
++||||||++++ +.|+|.++|+|.||+.+++|+++|++|+++.++|+|||++||+++++|++|||+|+||+||+.++|
T Consensus 308 llvEvQALv~~s~~~nPrR~~~G~D~nRl~mllAVLek~~gl~l~~~DvyvnvaGG~ki~EPAaDLAva~Al~SS~~~~~ 387 (456)
T COG1066 308 LLVEIQALVSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLPLGDQDVYVNVAGGVKVTEPAADLAVALALVSSFRNRP 387 (456)
T ss_pred eEEEeeeccccccCCCCceEEeccChhHHHHHHHHHHHhcCCcccCccEEEEccCCEecCCchHHHHHHHHHHHHhcCCC
Confidence 999999999996 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 509 ~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
+|++++|+|||||+||||||+.+..|++||+++|||++|+|+.|.. ..+++++++|+++.|++++++.
T Consensus 388 lp~~~v~~GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~-----~~~~~~~~~v~~l~~a~~~~~~ 455 (456)
T COG1066 388 LPQDTVVFGEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP-----LPEGIKVIGVSTLAEALEVVFD 455 (456)
T ss_pred CCCCeEEEEeeccCceeeecCcHHHHHHHHHHcCCCEEEccCCcCC-----CCCCceEEEechHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999975 2468999999999999998864
No 2
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=100.00 E-value=3e-94 Score=782.21 Aligned_cols=448 Identities=42% Similarity=0.734 Sum_probs=402.5
Q ss_pred CCCceeECCCCCCCCccceecCCccccccccccccccCC-CCC-CccccccCCCCCCCcCceeccccccccccccccccc
Q 007957 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES-DEG-PVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPL 188 (583)
Q Consensus 111 ~~~~~~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~Ri~t 188 (583)
+.|+.|+|++|||++++|+||||+|++|||++|+....+ ... ......+... ....++.++.++.... ..|++|
T Consensus 3 ~~~~~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ri~T 78 (454)
T TIGR00416 3 KAKSKFVCQHCGADSPKWQGKCPACHAWNTITEERLHRSLGAQKNRRNSGKAGI-PQAQKSQTISAIELEE---VPRFSS 78 (454)
T ss_pred CCCCeEECCcCCCCCccccEECcCCCCccccchhhccccccccccccccccccc-ccCccceEhhhccccc---cCcccc
Confidence 347899999999999999999999999999999632211 100 0000000000 0014577888887543 469998
Q ss_pred CCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc
Q 007957 189 SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE 268 (583)
Q Consensus 189 ~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~ 268 (583)
|+ ++||++|+||+++|++++|+|+||+|||||++|++..++.. +++|+|+++|++.+|+..|+.+++++.++
T Consensus 79 -Gi--~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-----g~kvlYvs~EEs~~qi~~ra~rlg~~~~~ 150 (454)
T TIGR00416 79 -GF--GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-----QMKVLYVSGEESLQQIKMRAIRLGLPEPN 150 (454)
T ss_pred -Cc--HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEECcCCHHHHHHHHHHcCCChHH
Confidence 88 99999999999999999999999999999999999998874 56899999999999999999999999899
Q ss_pred cccCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCc
Q 007957 269 LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348 (583)
Q Consensus 269 i~i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~ 348 (583)
++++.+.+++++.+.+.+.+|++|||||+|+++..+..+.+++..|+++++..|.++||++|+|+|+++|+++++.++|+
T Consensus 151 l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~ 230 (454)
T TIGR00416 151 LYVLSETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGP 230 (454)
T ss_pred eEEcCCCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCc
Confidence 99999999999999999999999999999999887777778899999999999999999999999999999999999999
Q ss_pred cchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCC
Q 007957 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGS 428 (583)
Q Consensus 349 ~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~ 428 (583)
+.++|++|.|++|++++....|.++++|||||++++++.|+|++.|+..+.+|+.+|++++. ++.+|++++++++|+
T Consensus 231 ~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~~~e~~~f~it~~Gl~~v~~ps~~f~~~~~---~~~~g~~~~~~~~G~ 307 (454)
T TIGR00416 231 KVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSRRE---EPMSGSSITVTWEGT 307 (454)
T ss_pred ccEeeeceEEEEEeccCCCcEEEEEEecCCCCCCCcEEEEEEecCCceecCChhHhhhccCC---CCCCceEEEEEEEcc
Confidence 99999999999999877778899999999999999999999999999999999999998776 347899999999999
Q ss_pred ceeEEEEEEEeecC--CCceEEEechhHHHHHHHHHHHHHhcCCCcccccEEEEecCCcccccccccHHHHHHHHHcccC
Q 007957 429 RSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLE 506 (583)
Q Consensus 429 ~~~lVEvqalv~~~--~~p~~~~~G~~~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~ 506 (583)
++++|||||+++++ ++|+|+++|+|.+|.++++|+++|++|++|+++||||||++|++|+||++|||||+||+||+.+
T Consensus 308 r~~~veVqalv~~~~~~~p~~~~~G~~~~r~~~~~Avl~k~~g~~~~~~di~vNl~ggl~~~~~~~DLaia~ailss~~~ 387 (454)
T TIGR00416 308 RPLLVEIQALVSPTSFANPRRVATGLDQNRLALLLAVLEKRLGLPLADQDVFLNVAGGVKVSEPAADLALLIAIVSSFRD 387 (454)
T ss_pred cCEEEEEEEEecCCCCCCCCEEEEcCccHHHHHHHHHHHHhcCCCCCCceEEEEccCCcccCCccccHHHHHHHHHhCCC
Confidence 99999999999985 3799999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHH
Q 007957 507 FPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576 (583)
Q Consensus 507 ~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~ 576 (583)
+|++++++|+|||||+|+||||+|+++|+.+|+++||+++|||++|.++ ...++++|++|+||+|++
T Consensus 388 ~~~~~~~~~~GElgL~Gevr~v~g~~~~~~~a~~~G~~~~ivP~~n~~e---~~~~~i~i~~v~~l~e~~ 454 (454)
T TIGR00416 388 RPLDPDLVFLGEVGLAGEIRPVPSLEERLKEAAKLGFKRAIVPKANSPK---TAPEGIKVIGVKKVGDAL 454 (454)
T ss_pred CCCCCCEEEEEEecCCeEEEeeCCHHHHHHHHHHcCCCEEEeCcccccc---cccCCcEEEEcCcHHHhC
Confidence 9999999999999999999999999999999999999999999999865 235699999999999985
No 3
>PRK11823 DNA repair protein RadA; Provisional
Probab=100.00 E-value=3.8e-93 Score=773.20 Aligned_cols=441 Identities=46% Similarity=0.789 Sum_probs=404.3
Q ss_pred CCCceeECCCCCCCCccceecCCccccccccccccccCCCCCCccccccCCCCCCCcCceecccccccccccccccccCC
Q 007957 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190 (583)
Q Consensus 111 ~~~~~~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~Ri~t~G 190 (583)
+.|+.|+|++|||.+++|+||||+|++|||++|+. . . .. . . ....+.+++++.... ..|++| |
T Consensus 3 ~~~~~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~e~~-~-~-~~--~--~------~~~~~~~~~~~~~~~---~~ri~T-G 65 (446)
T PRK11823 3 KKKTAYVCQECGAESPKWLGRCPECGAWNTLVEEV-A-A-SK--A--G------SSKPVQPLSDIEAEE---EPRIST-G 65 (446)
T ss_pred CCCCeEECCcCCCCCcccCeeCcCCCCccceeeec-c-c-cc--c--c------CCCCceehhhccccc---CCcccC-C
Confidence 34889999999999999999999999999999964 1 1 10 0 0 113466788887542 479998 8
Q ss_pred CChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccc
Q 007957 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELF 270 (583)
Q Consensus 191 i~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~ 270 (583)
+ ++||++|+||+++|++++|+|+||+|||||++|++..++.. +.+|+|+++|++.+|+..|+++++++.++++
T Consensus 66 i--~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-----g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 66 I--GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-----GGKVLYVSGEESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred c--HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccccHHHHHHHHHHcCCChhcEE
Confidence 8 99999999999999999999999999999999999998853 6789999999999999999999999888888
Q ss_pred cCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccc
Q 007957 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350 (583)
Q Consensus 271 i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~ 350 (583)
+..+.+++++++.+++.+|++|||||+++++....++.+++..|+++++..|.++++++++++|+++|+++++.++|++.
T Consensus 139 ~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~ 218 (446)
T PRK11823 139 LLAETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRV 218 (446)
T ss_pred EeCCCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcch
Confidence 88888999999999999999999999999988777777889999999999999999999999999999999999999999
Q ss_pred hheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCce
Q 007957 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRS 430 (583)
Q Consensus 351 Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~ 430 (583)
++|++|.|++|++++....|.|+++|+|||+++++..|+|++.|+..+.+|+.+|++++. +..+|++++++++|+++
T Consensus 219 lehlvD~Vi~le~~~~~~~R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~~ps~~~~~~~~---~~~~g~~~~~~~~G~~~ 295 (446)
T PRK11823 219 LEHMVDTVLYFEGDRHSRYRILRAVKNRFGATNEIGVFEMTEQGLREVSNPSELFLSERD---ENVPGSAVTVTMEGTRP 295 (446)
T ss_pred hhhhCeEEEEEEcCCCCceEEEEEccCCCCCCCceEEEEEcCCCceECCCHHHHHhcCCC---CCCCceEEEEEEEcccc
Confidence 999999999999765667899999999999999999999999999999999999998875 34789999999999999
Q ss_pred eEEEEEEEeecC--CCceEEEechhHHHHHHHHHHHHHhcCCCcccccEEEEecCCcccccccccHHHHHHHHHcccCCC
Q 007957 431 FLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508 (583)
Q Consensus 431 ~lVEvqalv~~~--~~p~~~~~G~~~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~ 508 (583)
++|||||+++++ |+|+|+++|+|.+|++++.|+++||+|++||++||||||+++++|+||++|||||+||+||+.++|
T Consensus 296 ~~veVea~v~~~~~g~p~~~~vGl~~~Rv~~~~Avl~~~~g~~~~~~~i~vnla~~~~k~g~~~DLaIa~ailsa~~~~~ 375 (446)
T PRK11823 296 LLVEIQALVSPTSFGNPRRTAVGLDSNRLAMLLAVLEKRLGLPLGDQDVYVNVVGGLKITEPAADLAVALAIASSLRDRP 375 (446)
T ss_pred eEEEEEEeecCCcCCCCceEEecCCHHHHHHHHHHHHHHcCCCCCCccEEEEccCCcccCCccccHHHHHHHHHhccCCC
Confidence 999999999884 589999999999999999999999999999999999999977999999999999999999999999
Q ss_pred CCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 509 ~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
++++++|+|||||||+||||+|+++|+.+|+++||+++|||++|..| + .+++++|++|+||+|++++++.
T Consensus 376 ~~~~~~~~GEl~L~G~vr~v~g~~~~~~~a~~~g~~~~ivP~~n~~e--~-~~~~i~v~~v~~l~e~~~~l~~ 445 (446)
T PRK11823 376 LPPDTVVFGEVGLTGEIRPVPRIERRLKEAAKLGFKRAIVPKGNLPK--K-PPKGIEVIGVKTLAEALELLFG 445 (446)
T ss_pred CCCCeEEEEecCCCeeEeccCCHHHHHHHHHHCCCCEEEeCCccccc--c-ccCCCEEEEeCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999876 4 5679999999999999999875
No 4
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=100.00 E-value=8.4e-78 Score=637.25 Aligned_cols=370 Identities=52% Similarity=0.853 Sum_probs=333.5
Q ss_pred eECCCCCCCCccceecCCccccccccccccccCCCCCCccccccCCCCCCCcCceecccccccccccccccccCCCChhh
Q 007957 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNE 195 (583)
Q Consensus 116 ~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~Ri~t~Gi~~~e 195 (583)
|+|++|||+++||+||||+|++|||++|+........ ..... .. ....++.++.++.... ..|++| |+ ++
T Consensus 1 ~~c~~cg~~~~~~~g~cp~c~~w~~~~e~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~---~~ri~T-Gi--~e 70 (372)
T cd01121 1 YVCSECGYVSPKWLGKCPECGEWNTLVEEIEPSSSSG-SGGRS-SG--GSASKVIPLSDIEAEE---EERIPT-GI--EE 70 (372)
T ss_pred CCCCCCCCCCCCccEECcCCCCceeeeehhccccccc-ccccc-cc--ccCCCceEhhhccccc---cCcccc-CC--HH
Confidence 8999999999999999999999999999632211110 00000 00 0113577888887542 469998 88 99
Q ss_pred hhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcc
Q 007957 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSST 275 (583)
Q Consensus 196 LD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~ 275 (583)
||++|+||+++|++++|+|+||+|||||++|++..++.. +.+|+|+++|++.+|++.|+.+++++.++++++.+.
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-----g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~ 145 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-----GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAET 145 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccC
Confidence 999999999999999999999999999999999998874 578999999999999999999999998999988889
Q ss_pred cHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheec
Q 007957 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355 (583)
Q Consensus 276 ~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~a 355 (583)
+++++.+.+...+|++|||||+|+++..+.++.+++..|+++++..|.++||++++++|+++|+++++.++|++.++|++
T Consensus 146 ~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~v 225 (372)
T cd01121 146 NLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMV 225 (372)
T ss_pred cHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhc
Confidence 99999999999999999999999998777767788899999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEE
Q 007957 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEI 435 (583)
Q Consensus 356 D~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEv 435 (583)
|.|++|++++....|.|+++|||||++++++.|+|++.|+..+.+|+.+|++++. +..+|++++++++|+|+++|||
T Consensus 226 D~Vi~le~~~~~~~R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~---~~~~g~~~~~~~eg~r~~~~e~ 302 (372)
T cd01121 226 DTVLYFEGDRHSEYRILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSERE---EDVPGSAVTVVMEGSRPLLVEV 302 (372)
T ss_pred eEEEEEEcCCCCcEEEEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCC---CCCCccEEEeeccCCcceeeEe
Confidence 9999999887777899999999999999999999999999999999999998875 3478999999999999999999
Q ss_pred EEEeecCC--CceEEEechhHHHHHHHHHHHHHhcCCCcccccEEEEecCCcccccccccHHHHHHHHHc
Q 007957 436 QALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSS 503 (583)
Q Consensus 436 qalv~~~~--~p~~~~~G~~~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa 503 (583)
||||+++. .|||+++|+|.+|+.+++||++|++|+++.++|||||++||++++||++|||||+||+||
T Consensus 303 qal~~~~~~~~p~r~~~g~~~~r~~~~~avl~k~~~~~~~~~dv~~~~~gg~~~~e~~~dla~~~a~~ss 372 (372)
T cd01121 303 QALVSPTSYANPRRVAVGFDPNRLSMLLAVLEKRLGLPLADQDVFVNVAGGLKITEPAADLAVALAIVSS 372 (372)
T ss_pred ehhccCCCCCCCceeEcCCChhHHHHHHHHHHHHcCCCccCCCEEEEccCCeeccCcHHHHHHHHHHHcC
Confidence 99999963 699999999999999999999999999999999999999999999999999999999986
No 5
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=6.5e-34 Score=329.29 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=169.9
Q ss_pred eecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHH----
Q 007957 388 FEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMI---- 460 (583)
Q Consensus 388 f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~---- 460 (583)
+.++...++.+.+++.+..... .+ ...+|.+++++|.|..+.+++|||.+.+ |.|+++++|+. ++|++++
T Consensus 572 v~i~~~~~~~~lg~~~~~~~~~-~~-~~~~G~v~gla~~~~~g~~~~iE~~~~~-G~~~~~~tG~~~~~~kES~~~a~~~ 648 (775)
T TIGR00763 572 VVITPDNLKKYLGKPVFTYERA-YE-VTPPGVVMGLAWTPMGGDTLFIETTKVA-GKGSLELTGQLGDVMKESAQIALTY 648 (775)
T ss_pred ccCCHHHHHHhcCccccccchh-cc-CCCCeEEEEEEEeCCCcEEEEEEEEEeC-CCceEEEeCCchHHHHHHHHHHHHH
Confidence 5666777888888776654332 22 5679999999999999999999999998 68999999986 8899998
Q ss_pred HHHHHHhcCCCc---ccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHH
Q 007957 461 ISVLMKQAGLKL---QENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVS 536 (583)
Q Consensus 461 v~~~~k~~g~~~---~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~ 536 (583)
++++.+++|+++ +++|||||++|| .+|+||++|||||+||+|++.++|++.+++|+|||+|+|+|+||+|+.+++.
T Consensus 649 v~~~~~~~~~~~~~~~~~di~v~~~~g~~~k~Gpsa~laia~al~sa~~~~~v~~~~~~~GEi~L~G~v~pv~g~~~k~~ 728 (775)
T TIGR00763 649 VRSIAADLGISPNFFEKADIHLHVPEGATPKDGPSAGITMATALLSLATGKPVRPDVAMTGEITLRGKVLPIGGLKEKTI 728 (775)
T ss_pred HHHHHHHcCCCccccCCeEEEEEcCCcccCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEEecCCceEEEeCCHHHHHH
Confidence 999999999986 899999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEeCCChhhh---hhcCCCCcEEEEeCCHHHHHHHhh
Q 007957 537 TVAKLGYRKCIVPKSAEKSL---ATLGFEQMEFIGCKNLKEVINVVF 580 (583)
Q Consensus 537 ~A~~~G~k~~ivP~~n~~e~---~~~~~~~i~v~~v~~l~e~~~~l~ 580 (583)
+|+++|++++|+|++|.+++ ++.+.+++++++|+|+.||++++|
T Consensus 729 ~A~~~G~~~viiP~~n~~~~~~~p~~~~~~~~i~~v~~l~e~~~~~~ 775 (775)
T TIGR00763 729 AAKRAGIKTIILPEKNRRDLEELPENVKEGLEIHFVKHYDEVLKKAF 775 (775)
T ss_pred HHHHCCCCEEEECccchhhhhhchHhhcCCCEEEEeCCHHHHHHHhC
Confidence 99999999999999998763 344667999999999999999764
No 6
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=100.00 E-value=5.5e-33 Score=313.04 Aligned_cols=190 Identities=19% Similarity=0.310 Sum_probs=163.1
Q ss_pred ecccCCeEEecCCCcccc--cccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHHHHH
Q 007957 389 EMSQLGLQAVSNPSKIFL--SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMIISV 463 (583)
Q Consensus 389 ~It~~GL~~v~~ps~ifl--~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~v~~ 463 (583)
.++...++.+.+.+.+.. ..+..+ ...+|.+++++|.|..+.+|+||+.+.+.|.|++.++|++ .++++++++.
T Consensus 417 ~I~~edv~~~l~~~r~~~~~~~~~~~-~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~vgl~~~~~~e~kerv~~ 495 (615)
T TIGR02903 417 TITQDDVYEVIQISRLSPYEKRKASP-TYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTVRFNDTAGSMAKDSVFN 495 (615)
T ss_pred eECHHHHHHHhCCCcCccchhhhccC-CCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceEeeCCcchHHHHHHHHH
Confidence 344444555666554421 122222 4578999999999999999999999944467888888886 8889999888
Q ss_pred HHH----hcCCCcccccEEEEecCCcccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHH
Q 007957 464 LMK----QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVA 539 (583)
Q Consensus 464 ~~k----~~g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~ 539 (583)
|.. ++|++|+++|||||++||.+|+||++|||||+||+||+.++|++++++|+|||+|+|+||||+|+.+++.+|+
T Consensus 496 A~~~l~~~~g~~~~~~di~vnl~~~~~k~gpsadLaia~ailSa~~~~~~~~~~~~~GElsL~G~v~pV~Gi~~~i~~A~ 575 (615)
T TIGR02903 496 AASVIRKITGKDLSNYDIHVNVIGGGRIDGPSAGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAK 575 (615)
T ss_pred HHHHHHHhCCCCCCCeeEEEEcCCCCCCCCchHHHHHHHHHHHhccCCCCCCCEEEEEEecCCceEEeeCCHHHHHHHHH
Confidence 887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhh
Q 007957 540 KLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580 (583)
Q Consensus 540 ~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~ 580 (583)
+.|++++|||++|..|++ ...++++|++|+|+.|+++++|
T Consensus 576 ~~G~~~viiP~~n~~e~~-~~~~~i~i~~v~~l~e~~~~~~ 615 (615)
T TIGR02903 576 QAGIKTVVIPEENLKDVP-QGLPGIEVKFVSTIEELMRIVF 615 (615)
T ss_pred HCCCCEEEECHHHHHHHh-hccCCcEEEEeCCHHHHHHHhC
Confidence 999999999999988753 3457999999999999999875
No 7
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=306.10 Aligned_cols=192 Identities=17% Similarity=0.278 Sum_probs=169.2
Q ss_pred eecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHH----H
Q 007957 388 FEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADM----I 460 (583)
Q Consensus 388 f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~----~ 460 (583)
|.++...+..+++...+-. ++..+ ++.+|.+.+++|+...|.++.||+...+ |.+.+++||.- ++|+.. .
T Consensus 570 ~~i~~~~l~~yLG~~~f~~-~~~~~-~~~vGvVtGLAWT~vGGd~L~IE~~~~~-Gkg~l~lTG~LGdVMKESa~~A~s~ 646 (782)
T COG0466 570 VKIDEKNLKKYLGVPVFRY-GKAEE-EDQVGVVTGLAWTEVGGDLLTIEAVKMP-GKGKLTLTGSLGDVMKESAQAALSY 646 (782)
T ss_pred eeeCHHHHHHHhCCcccCc-ccccc-CCCCeeEeeeeeecCCceEEEEEEEEec-CCccEEEeccHHHHHHHHHHHHHHH
Confidence 6788888899998765544 33332 6789999999999999999999999988 56799999984 777554 5
Q ss_pred HHHHHHhcCCC---cccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHH
Q 007957 461 ISVLMKQAGLK---LQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVS 536 (583)
Q Consensus 461 v~~~~k~~g~~---~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~ 536 (583)
|++...+.|++ |...|||||++.| .||+||||+++||+||+|+++++|+..+++|||||+|+|+|.||+|+.++++
T Consensus 647 vrs~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGEITLrG~VLpIGGLKEKll 726 (782)
T COG0466 647 VRSRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVLPIGGLKEKLL 726 (782)
T ss_pred HHHHHHHcCCCcccccccceEEECCCCCCCCCCcchHHHHHHHHHHHHhCCCCCCCccceeeEEeeeceeecccHHHHHH
Confidence 66777778884 8899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEeCCChhhh---hhcCCCCcEEEEeCCHHHHHHHhhcC
Q 007957 537 TVAKLGYRKCIVPKSAEKSL---ATLGFEQMEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 537 ~A~~~G~k~~ivP~~n~~e~---~~~~~~~i~v~~v~~l~e~~~~l~~~ 582 (583)
+|.|.|+|++|+|++|.+++ |..+.+++++++|+++.|+++++|.+
T Consensus 727 AA~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~~eVl~~al~~ 775 (782)
T COG0466 727 AAHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVG 775 (782)
T ss_pred HHHhcCCcEEeccccccccHHhCCHHHHcCCeEEEeccHHHHHHHHhcC
Confidence 99999999999999997765 45677899999999999999998843
No 8
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=100.00 E-value=3.8e-33 Score=306.07 Aligned_cols=158 Identities=20% Similarity=0.281 Sum_probs=147.9
Q ss_pred EEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHHHHHHHHhcCCCcccccEEEEecCC-cccccccccHH
Q 007957 420 AVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMIISVLMKQAGLKLQENAIFLNVVSG-VALTETAGDLA 495 (583)
Q Consensus 420 ~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g-~~~~gp~~DLa 495 (583)
++++++.|.++.+|+|||.+++ |+|.+++||++ ++|+++||++|++|+|++|+++||||||+|| ++|+||++|||
T Consensus 1 ~~s~~~~g~~~~~v~VEv~~~~-Glp~f~ivGl~d~~v~Es~erVr~al~n~g~~~p~~~I~VNlaPggl~k~g~~~DLa 79 (499)
T TIGR00368 1 VYSRSSLGVEAPLITIEVDISK-GLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRITINLAPADLPKEGGRFDLP 79 (499)
T ss_pred CeEEEEecceeEEEEEEEEEcC-CCcceEEecCcHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEecCCCeeccCccccHH
Confidence 3678899999999999999998 79999999997 9999999999999999999999999999977 99999999999
Q ss_pred HHHHHHHc--ccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHH
Q 007957 496 VAAAICSS--FLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLK 573 (583)
Q Consensus 496 ia~ailsa--~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~ 573 (583)
||+||||| ..+.+.+++++|+|||||+|+||||+|+++|+.+|+++||+++|||++|..| +..+++++|++|++|+
T Consensus 80 IA~ailsa~~~~~~~~~~~~~~~GElgL~G~vr~V~gi~~~~~~A~~~G~~~~ivP~~n~~e--~~~~~~i~v~~v~~L~ 157 (499)
T TIGR00368 80 IAIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKFIIVPKENAEE--ASLIDGLNIYGADHLK 157 (499)
T ss_pred HHHHHHHhccCCCCCcccCEEEEEEecCCceeccCcCHHHHHHHHHHcCCCEEEechhhhhh--hccCCCcEEEEchhHH
Confidence 99999999 5777778899999999999999999999999999999999999999999876 4456799999999999
Q ss_pred HHHHHhh
Q 007957 574 EVINVVF 580 (583)
Q Consensus 574 e~~~~l~ 580 (583)
|+++++.
T Consensus 158 e~~~~l~ 164 (499)
T TIGR00368 158 EVVKFLE 164 (499)
T ss_pred HHHHHhc
Confidence 9999874
No 9
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=100.00 E-value=3e-32 Score=302.79 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=159.6
Q ss_pred cccCCeEEecCCCccccc--ccccccccccceEEEEEEcC-CceeEEEEEEEeecC-CCc-eEEEechh-----------
Q 007957 390 MSQLGLQAVSNPSKIFLS--EQHSDSEFLAGLAVAVIMDG-SRSFLIEIQALCVSG-STV-SRHVNGIQ----------- 453 (583)
Q Consensus 390 It~~GL~~v~~ps~ifl~--~r~~~~~~~~G~~~s~~~~G-~~~~lVEvqalv~~~-~~p-~~~~~G~~----------- 453 (583)
++.+.++++.+.+.+... .... .++..|.+.++++.| ..+.+|+|||.+.+. +.| .++++|++
T Consensus 320 It~~dI~~vl~~~~~~~~~~~~~~-~~~~vg~v~glav~g~~~g~~v~vE~~~~~~~~~~g~~~i~G~~~~~~~~~~~~~ 398 (531)
T TIGR02902 320 ILAEDIEWVAENGNYHPKPEIKLS-SEPQIGRVNGLAVYGPNSGAVLEVEATAERAENLPGSINVTGIIEEEEIGGSGKS 398 (531)
T ss_pred EcHHHHHHHhCCcccccchhhhcc-cCCceEEEEEEEEEcCCceEEEEEEEEEecCCCCCCeEEEEeccCccccccchhh
Confidence 444445555554443221 1111 256789999999999 799999999999872 344 89999974
Q ss_pred ------HHHHHHHHHHHHHhc-CCCcccccEEEEecCCcccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCccee
Q 007957 454 ------ASRADMIISVLMKQA-GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526 (583)
Q Consensus 454 ------~~~~~~~v~~~~k~~-g~~~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr 526 (583)
++++.+++.++++++ |++++++|||||+++|++|+||++|||||+||+||+.++|++.+++|+|||+|+|+||
T Consensus 399 ~~~k~~~~es~~~v~~~l~~~~g~~~~~~di~vn~p~~~~k~Gpsadlaia~ailsa~~~~~~~~~~a~~GElsL~G~v~ 478 (531)
T TIGR02902 399 VRRKSSARGSVENVLAVLRSVFGINPQNYDIHINFPGGIPVDGPSAGVAIAVAIYSAIFKCPIDNKVAMTGEISLNGLVK 478 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEcCCCCCCCCccHHHHHHHHHHHHccCCCCCCCEEEEEEecCCceEe
Confidence 356888899988887 9999999999997766999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhh
Q 007957 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580 (583)
Q Consensus 527 ~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~ 580 (583)
||+|+.+++.+|+++|++++|||++|.+|+. ..+++++|++|+||.|+++++|
T Consensus 479 pV~Gv~~ki~~A~~~G~~~viiP~~n~~e~~-~~~~~i~v~~v~~l~e~~~~~~ 531 (531)
T TIGR02902 479 PVGGVPSKIEAAKKAGAKKVIIPYENWQESF-GSISGINVIPVKNIDEALNYAL 531 (531)
T ss_pred ccCCHHHHHHHHHHcCCCEEEECHHHHHHHh-hccCCcEEEEeCCHHHHHHHhC
Confidence 9999999999999999999999999988742 3457999999999999999865
No 10
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.97 E-value=6.1e-31 Score=302.53 Aligned_cols=193 Identities=15% Similarity=0.273 Sum_probs=161.0
Q ss_pred eeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHH---
Q 007957 387 VFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMI--- 460 (583)
Q Consensus 387 ~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~--- 460 (583)
.+.++...+..+.+++.+... +... ...+|.+.+++|++..+.++.||+.+.+ |.+++.++|.. ++|+...
T Consensus 567 ~v~v~~~~~~~~lg~~~~~~~-~~~~-~~~~G~~~gla~t~~gg~~l~iE~~~~~-g~g~~~~tG~lg~vmkes~~~A~~ 643 (784)
T PRK10787 567 HIEINGDNLHDYLGVQRFDYG-RADN-ENRVGQVTGLAWTEVGGDLLTIETACVP-GKGKLTYTGSLGEVMQESIQAALT 643 (784)
T ss_pred eeeecHHHHHHHhCCCccccc-hhhc-CCCceEEEEeEEeCCCeEEEEEEEEEec-CCceEEEecCcHHHHHHHHHHHHH
Confidence 355666677888888766543 2222 5689999999999999999999999998 56889999974 6665543
Q ss_pred -HHHHHHhcCCC---cccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHH
Q 007957 461 -ISVLMKQAGLK---LQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRV 535 (583)
Q Consensus 461 -v~~~~k~~g~~---~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i 535 (583)
+++..+++|++ +.++|||||+++| .+++|||+|||||+||+|++.++|++.+++|+|||+|+|+|+||+|+.+|+
T Consensus 644 ~~~~~~~~~~~~~~~~~~~Di~i~v~~g~~~~dgpsagla~~~Al~S~~~~~pv~~~~a~tGEi~L~G~V~pVggl~eki 723 (784)
T PRK10787 644 VVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKL 723 (784)
T ss_pred HHHHHHHHcCCCcccccCceEEEEecCCCCCCCCCchHHHHHHHHHHHhhCCCCCCCeEEEEEecCCeeEEeeCCHHHHH
Confidence 33334456665 5689999999999 667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEeCCChhhh---hhcCCCCcEEEEeCCHHHHHHHhhcC
Q 007957 536 STVAKLGYRKCIVPKSAEKSL---ATLGFEQMEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 536 ~~A~~~G~k~~ivP~~n~~e~---~~~~~~~i~v~~v~~l~e~~~~l~~~ 582 (583)
.+|.++|||++|+|.+|..++ +.....++++++|+++.||++.++..
T Consensus 724 ~~A~r~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~~~ea~~~~~~~ 773 (784)
T PRK10787 724 LAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQN 773 (784)
T ss_pred HHHHHCCCCEEEEChhhhhhhhhccHHhcCCcEEEEeCCHHHHHHHHhcc
Confidence 999999999999999997654 23344689999999999999988743
No 11
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.97 E-value=2.6e-31 Score=290.42 Aligned_cols=160 Identities=17% Similarity=0.173 Sum_probs=151.2
Q ss_pred cceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHHHHHHHHhcCCCcccccEEEEecCC-cccccccc
Q 007957 417 AGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMIISVLMKQAGLKLQENAIFLNVVSG-VALTETAG 492 (583)
Q Consensus 417 ~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g-~~~~gp~~ 492 (583)
.+.+++.++.|.++.+|+|||.+++ |+|.+++||++ ++|+++||++|++|+|+.||.++|+|||+|+ ++|.|++|
T Consensus 3 ~~~~~s~~~~G~~~~~v~VE~~~~~-Glp~f~ivGl~d~~v~Es~eRvr~Al~n~g~~~P~~ritvnL~Pa~~~K~G~~~ 81 (506)
T PRK09862 3 LSIVHTRAALGVNAPPITVEVHISK-GLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRY 81 (506)
T ss_pred ceEEEEEEEeceeeeEEEEEEEEcC-CCcceEEeCCcHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeCCCCCCCCCccc
Confidence 3578999999999999999999998 79999999997 9999999999999999999999999999999 99999999
Q ss_pred cHHHHHHHHHcccCCCC--CCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeC
Q 007957 493 DLAVAAAICSSFLEFPI--PNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCK 570 (583)
Q Consensus 493 DLaia~ailsa~~~~~~--~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~ 570 (583)
|||||+|||+|...++. .++++|+|||+|||+||||+|+++.+.+|++.|+ ++|||.+|..| +.++++++|++++
T Consensus 82 DL~IA~~iL~a~~~i~~~~l~~~~~~GEL~LdG~lr~v~g~lp~~~~a~~~g~-~~~vp~~n~~e--a~~v~~~~v~~~~ 158 (506)
T PRK09862 82 DLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGR-KIIVAKDNEDE--VGLINGEGCLIAD 158 (506)
T ss_pred cHHHHHHHHHhcCCCCchhhhCEEEEEEecCCceEeccchHHHHHHHHHHCCC-EEEeehHHHHH--HhcCCCCeEEecC
Confidence 99999999999876653 4699999999999999999999999999999999 89999999988 7789999999999
Q ss_pred CHHHHHHHhh
Q 007957 571 NLKEVINVVF 580 (583)
Q Consensus 571 ~l~e~~~~l~ 580 (583)
||.|++++|.
T Consensus 159 ~L~~~~~~l~ 168 (506)
T PRK09862 159 HLQAVCAFLE 168 (506)
T ss_pred CHHHHHHHHc
Confidence 9999999885
No 12
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=99.97 E-value=2.4e-31 Score=238.61 Aligned_cols=117 Identities=31% Similarity=0.509 Sum_probs=112.5
Q ss_pred EEEEeecCCCceEEEechh---HHHHHHHHHHHHHhcCCCcccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCC
Q 007957 435 IQALCVSGSTVSRHVNGIQ---ASRADMIISVLMKQAGLKLQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIP 510 (583)
Q Consensus 435 vqalv~~~~~p~~~~~G~~---~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~ 510 (583)
||+.+++ |+|.++++|++ ++|+++||+++++++|++||++||||||+|| ++|+||++|||||+||+|++.++|.+
T Consensus 1 VEv~~~~-Glp~~~ivGl~~~av~esr~Rv~~al~~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa~~~~~~~ 79 (121)
T PF13541_consen 1 VEVDISR-GLPSFNIVGLPDTAVKESRERVRSALKNSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIAILSAFGQIPIP 79 (121)
T ss_pred CEEEEcC-CCCceEEecCchHHHHHHHHHHHHHHHhcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHHHHHhCCCcccC
Confidence 4666777 79999999997 8999999999999999999999999999998 99999999999999999999999999
Q ss_pred CceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCC
Q 007957 511 NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552 (583)
Q Consensus 511 ~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n 552 (583)
++++|+|||+|||+||||+|+++++.+|+++||+++|||++|
T Consensus 80 ~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~~vivP~~N 121 (121)
T PF13541_consen 80 EDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFKRVIVPKAN 121 (121)
T ss_pred CCEEEEEEecCCccEEecCcHHHHHHHHHHCCCCEEEeCCCC
Confidence 999999999999999999999999999999999999999987
No 13
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=265.82 Aligned_cols=194 Identities=18% Similarity=0.280 Sum_probs=165.3
Q ss_pred eeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecC-CCceEEEechh---HHHHHHHHH
Q 007957 387 VFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG-STVSRHVNGIQ---ASRADMIIS 462 (583)
Q Consensus 387 ~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~-~~p~~~~~G~~---~~~~~~~v~ 462 (583)
.+.|....|..+.+|+ +|-+++..+ ...+|++++++|+...+-.+-||+....+ +.|.+.+||.- ++|+..+.-
T Consensus 691 ~i~I~~~nL~d~lG~P-~f~~e~~y~-~tp~GVvmGLaWT~mGG~~lyvEts~~~~~~~g~l~~TGqLGDVMKESa~iA~ 768 (906)
T KOG2004|consen 691 NIEIDESNLQDILGPP-VFTSERMYE-VTPPGVVMGLAWTAMGGSTLYVETSLMRGLGDGSLEITGQLGDVMKESAQIAY 768 (906)
T ss_pred eeeecHHHHHHHhCCC-cccHHHHhc-cCCCeeEEEEEEecCCCeEEEEEEEEeccCCCCceEEecchHHHHHHHHHHHH
Confidence 4667778888888886 456676654 56789999999999999999999888773 23779999984 788776544
Q ss_pred HHHH------hc-CCCcccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHH
Q 007957 463 VLMK------QA-GLKLQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534 (583)
Q Consensus 463 ~~~k------~~-g~~~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~ 534 (583)
...+ .. +..|.+.|||+|++.| .+|+||||+..|++|++|...++|+..+++|+|||+|+|.|.||+|+.++
T Consensus 769 t~ar~~~~~~~p~n~~l~~~~IHlH~PeGAtpKDGPSAGvTmvTsLlSLa~~kpVr~d~AMTGEvtLtGkVLpiGGiKEK 848 (906)
T KOG2004|consen 769 TWARAFLSKKEPENKFLENSDIHLHVPEGATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEK 848 (906)
T ss_pred HHHHHHHHhhCcccchhcccceeeeccCCCCCCcCCcccchhHHHHHHHhhCCcchhhhHhhcccccccceeccCchHHH
Confidence 3333 11 3348899999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCChhhhh---hcCCCCcEEEEeCCHHHHHHHhhcC
Q 007957 535 VSTVAKLGYRKCIVPKSAEKSLA---TLGFEQMEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 535 i~~A~~~G~k~~ivP~~n~~e~~---~~~~~~i~v~~v~~l~e~~~~l~~~ 582 (583)
+++|++.|+|++|+|++|.++++ ....+++++++++++.|+++.+|..
T Consensus 849 ~iAA~Rsg~k~ii~P~~N~~D~~elp~~vkegLev~~a~~yedv~~~aF~~ 899 (906)
T KOG2004|consen 849 TIAARRSGVKTIIFPEANRRDFEELPENVKEGLEVHFAETYEDVFEAAFDD 899 (906)
T ss_pred HHHHHhcCCeEEEccccchhhHHhhhhhhhccceEEeHHHHHHHHHHHhCC
Confidence 99999999999999999988754 4566799999999999999999853
No 14
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.95 E-value=3.1e-26 Score=230.25 Aligned_cols=201 Identities=21% Similarity=0.317 Sum_probs=160.2
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI 264 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i 264 (583)
|++| |+ ++||++|+||+++|++++|.|+||+|||+|++|++...+.. +.+++|++.|++++++..++..+++
T Consensus 2 ri~t-Gi--~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----ge~~lyvs~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 2 RVKT-GI--PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGIYVALEEHPVQVRRNMAQFGW 73 (237)
T ss_pred cccc-Cc--HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCcEEEEEeeCCHHHHHHHHHHhCC
Confidence 6777 88 99999999999999999999999999999999999887653 7899999999999999999999888
Q ss_pred cccc------cccC-------------------CcccHH----HHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHH
Q 007957 265 ATEE------LFLY-------------------SSTDIE----DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQV 315 (583)
Q Consensus 265 ~~~~------i~i~-------------------~~~~~e----~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qv 315 (583)
+.+. +.++ +..+++ .+.+.+...++++|||||+++++.. +....
T Consensus 74 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~-------~~~~~ 146 (237)
T TIGR03877 74 DVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYIT-------KPAMA 146 (237)
T ss_pred CHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcC-------ChHHH
Confidence 6432 2211 123433 3445556678999999999987631 33456
Q ss_pred HHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeeccc
Q 007957 316 KECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQ 392 (583)
Q Consensus 316 rei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~ 392 (583)
++++..|.++++++|+|+++++|.+......+...++++||.||.|+.... ...|.+++.|.|..++. ....|.|++
T Consensus 147 r~~l~~l~~~lk~~~~t~llt~~~~~~~~~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~i~K~Rg~~~~~~~~~~~It~ 226 (237)
T TIGR03877 147 RSIVMQLKRVLSGLGCTSIFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITD 226 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccccccccceEEEEeEEEEEEEEeeCCceEEEEEEEECCCCCCCCceEEEEEcC
Confidence 678899999999999999999998743222222457999999999985433 35688999999987776 478999999
Q ss_pred CCeEEecC
Q 007957 393 LGLQAVSN 400 (583)
Q Consensus 393 ~GL~~v~~ 400 (583)
+|++.++.
T Consensus 227 ~Gi~v~~~ 234 (237)
T TIGR03877 227 KGIIVYPD 234 (237)
T ss_pred CCEEEEeC
Confidence 99997664
No 15
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.94 E-value=1.2e-26 Score=260.39 Aligned_cols=167 Identities=20% Similarity=0.304 Sum_probs=151.3
Q ss_pred ccccceEEEEEEcCCc-ee--EEEEEEEeecCCC--ceEEEechh---HHHHHHHHHHHHHh-cCCCcccccEEEEecCC
Q 007957 414 EFLAGLAVAVIMDGSR-SF--LIEIQALCVSGST--VSRHVNGIQ---ASRADMIISVLMKQ-AGLKLQENAIFLNVVSG 484 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~-~~--lVEvqalv~~~~~--p~~~~~G~~---~~~~~~~v~~~~k~-~g~~~~~~dI~vnl~~g 484 (583)
...+|.+.+++|.|.. +. .||+|+...+ +. |.++++|++ ++|+.+++.+++++ +|++|+++|||||++|+
T Consensus 425 g~~vG~v~glav~g~~~G~v~~Ievev~~~~-g~~~g~~~ltG~l~~~~kES~~~v~a~l~~~~g~~~~~~~i~I~~~~~ 503 (637)
T PRK13765 425 GGEVGRVNGLAVMGEDSGIVLPIMAEVTPAQ-SKEEGKVIATGKLKEIAKEAVQNVSAIIKKFTGKDISNYDIHIQFVQT 503 (637)
T ss_pred ccceeEEEEEEEeccCceEEEEEEEEEEecC-CCCCCeEEeCCCcHHHHHHHHHHHHHHHHhcccccCCCeEEEEEEcCc
Confidence 3468999999999988 77 5666666554 45 899999996 89999999999988 99999999999999999
Q ss_pred -cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhh--hhcCC
Q 007957 485 -VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL--ATLGF 561 (583)
Q Consensus 485 -~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~--~~~~~ 561 (583)
.+|+|||+|||||+||+||+.++|++++++|+|||+|+|+|+||+|+.+++.+|.+.|++++|||++|.+++ +...+
T Consensus 504 ~~~kdG~SadLaia~AllSal~~~pv~~~~a~tGELsL~G~V~pVgGv~eki~~A~~~G~k~ViIP~~N~~e~~l~~~v~ 583 (637)
T PRK13765 504 YEGVEGDSASISVATAVISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVIIPKSNEQDVMIEDEYE 583 (637)
T ss_pred ccCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEecCCHHHHHHHHHHCCCCEEEECHHHHhhccchhhhc
Confidence 779999999999999999999999999999999999999999999999999999999999999999998875 33456
Q ss_pred CCcEEEEeCCHHHHHHHhhc
Q 007957 562 EQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 562 ~~i~v~~v~~l~e~~~~l~~ 581 (583)
++++|++|+|+.|++++++.
T Consensus 584 ~~i~I~~V~~l~eal~~al~ 603 (637)
T PRK13765 584 DKIEIIPVSTISEVLEHALV 603 (637)
T ss_pred CCCEEEEeCCHHHHHHHHhh
Confidence 79999999999999999875
No 16
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.94 E-value=2.1e-25 Score=227.15 Aligned_cols=201 Identities=24% Similarity=0.389 Sum_probs=156.1
Q ss_pred cccCCCChhhhhHHh--------------cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 186 IPLSGLFGNEVARVL--------------GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 186 i~t~Gi~~~eLD~vL--------------gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
++| |+ +.||++| +||+++|++++|.|+||+|||+|++|++...+.. +.+++|+++|++
T Consensus 4 ~~t-Gi--~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-----Ge~vlyis~Ee~ 75 (259)
T TIGR03878 4 VPT-GV--EGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-----GNPVLFVTVESP 75 (259)
T ss_pred ccC-Cc--hhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEecCC
Confidence 455 77 8888888 6999999999999999999999999999988764 679999999998
Q ss_pred HH----HHHHHHHhcccccc----ccccCCcc-------cHHH----HHHHhcccCCCEEEEccchhhhhhcccCCCCCH
Q 007957 252 VE----QIGNRADRMMIATE----ELFLYSST-------DIED----IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL 312 (583)
Q Consensus 252 ~~----qi~~R~~rl~i~~~----~i~i~~~~-------~~e~----i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~ 312 (583)
.+ ++..++.+++++.+ ++++++.. ++++ +...+++.++++|||||++.++.. ..
T Consensus 76 ~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~-------~~ 148 (259)
T TIGR03878 76 ANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA-------KE 148 (259)
T ss_pred chHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc-------ch
Confidence 76 45556677887643 34443322 2333 444566779999999999887531 33
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEecccCCc-----cCcCCccchheeccEEEEEeCc--------------eeceeeeEE
Q 007957 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKS-----GDIAGPRVLEHIVDAVLYMEGE--------------KFSSYRLLR 373 (583)
Q Consensus 313 ~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----g~~ag~~~Le~~aD~Vl~Le~~--------------~~~~~R~L~ 373 (583)
.+.++++..|.++++++++|+++++|.... +...+...++++||.||.|+.. .....|.++
T Consensus 149 ~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~ 228 (259)
T TIGR03878 149 MMAREIVRQLFNFMKKWYQTALFVSQKRSGHEELSAEAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFR 228 (259)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeccccCcccccccccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEEEEE
Confidence 567888889999999999999999986542 1344556789999999999831 123568899
Q ss_pred EEecccCCcc-ccceeecccCCeEEecCC
Q 007957 374 SVKNRFGSTD-ELGVFEMSQLGLQAVSNP 401 (583)
Q Consensus 374 i~KnR~g~~~-ei~~f~It~~GL~~v~~p 401 (583)
++|+|...+. ....|.|++.|+..+.+|
T Consensus 229 I~KmRg~~h~~~~~~~~It~~Gi~~i~~~ 257 (259)
T TIGR03878 229 IDGCRMCGHDTKTHVLEIDETGLVKIGPP 257 (259)
T ss_pred EEEccCCCCCCceeEEEEcCCceEEecCC
Confidence 9999987664 588999999999988766
No 17
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.94 E-value=8.4e-26 Score=254.16 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=148.4
Q ss_pred cccceEEEEEEcC-CceeE--EEEEEEeecCCCc-eEEEechh---HHHHHHHHHHHHH-hcCCCcccccEEEEecCC-c
Q 007957 415 FLAGLAVAVIMDG-SRSFL--IEIQALCVSGSTV-SRHVNGIQ---ASRADMIISVLMK-QAGLKLQENAIFLNVVSG-V 485 (583)
Q Consensus 415 ~~~G~~~s~~~~G-~~~~l--VEvqalv~~~~~p-~~~~~G~~---~~~~~~~v~~~~k-~~g~~~~~~dI~vnl~~g-~ 485 (583)
..+|.+++++|.| ..+.. |+||+.+..+..| +++++|++ ++|+.+++.++++ ++|++++++|||||++|+ .
T Consensus 417 ~~~G~v~glav~g~~~g~~~~i~ve~~~~~g~~~g~~~~~Gl~g~~~kEs~~~~~a~l~~~~~~~~~~~~i~I~l~~~~~ 496 (608)
T TIGR00764 417 GEVGRVNGLAVIGEASGIVLPIKAIVAPAESKEEGRIIATGKLGEIAKEAVTNVSALIKKYTGEDISNYDIHIQFLQTYE 496 (608)
T ss_pred CccEEEEEEEEeccCCceEEEEEEEEEecccCCCceEEEecCcHHHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC
Confidence 4689999999998 56666 8888887764234 59999996 8999999999888 899999999999999999 7
Q ss_pred ccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhh--hcCCCC
Q 007957 486 ALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA--TLGFEQ 563 (583)
Q Consensus 486 ~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~--~~~~~~ 563 (583)
+|+||++|||||+||+||+.++|++++++|+|||+|+|+|+||+|+.+++.+|++.|++++|||++|.+++. +....+
T Consensus 497 ~k~G~sadlaia~AilSa~~~~pv~~~~a~tGElsL~G~V~pVgGv~~ki~~A~~~G~k~viIP~~N~~~~~l~~~~~~~ 576 (608)
T TIGR00764 497 GVEGDSASISVATAVISALEEIPVDQDVAMTGSLSVRGEVLPVGGVTEKIEAAIEAGIKKVIIPKSNMIDVILEKETEGK 576 (608)
T ss_pred CCCCCchHHHHHHHHHHHccCCCCCCCEEEEEEECCCeEEEeeCCHHHHHHHHHHCCCCEEEECHHHHhhhccccccCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999988742 111234
Q ss_pred cEEEEeCCHHHHHHHhhc
Q 007957 564 MEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 564 i~v~~v~~l~e~~~~l~~ 581 (583)
++|++|+|+.|++++++.
T Consensus 577 ~~i~~v~~l~e~i~~l~~ 594 (608)
T TIGR00764 577 IEIIPVETLDEVLEHVLD 594 (608)
T ss_pred EEEEEeCCHHHHHHHHHh
Confidence 999999999999998874
No 18
>PRK04328 hypothetical protein; Provisional
Probab=99.94 E-value=2.5e-25 Score=225.36 Aligned_cols=202 Identities=21% Similarity=0.310 Sum_probs=160.9
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
+|++| |+ ++||++|+||+++|++++|.|+||+|||+|++|++...+.. +.+++|+++|++++++..+++.++
T Consensus 3 ~rv~t-Gi--~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-----ge~~lyis~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 3 KRVKT-GI--PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGVYVALEEHPVQVRRNMRQFG 74 (249)
T ss_pred ceecC-Cc--hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEEeeCCHHHHHHHHHHcC
Confidence 47887 88 99999999999999999999999999999999999887653 789999999999999999999998
Q ss_pred ccccc------cccC-------------------CcccH----HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 264 IATEE------LFLY-------------------SSTDI----EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 264 i~~~~------i~i~-------------------~~~~~----e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
++.+. +.++ +..++ +.+.+.+++.+++++||||+++++.. +...
T Consensus 75 ~d~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-------~~~~ 147 (249)
T PRK04328 75 WDVRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT-------KPAM 147 (249)
T ss_pred CCHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC-------ChHH
Confidence 86432 2211 12233 33455566779999999999988632 3345
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecc
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMS 391 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It 391 (583)
.++++..|.++++++|+|+++++|.....+..+...++++||.||.|+.... ...|.+++.|+|..++. ....|.|+
T Consensus 148 ~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~~~~~~~~~~~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~~~It 227 (249)
T PRK04328 148 ARSIVMQLKRVLSGLGCTAIFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEIT 227 (249)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECccccccccCCCCcEEEEEEEEEEEEEecCCcEEEEEEEEEccCCCCCCceEEEEEc
Confidence 6778888999999999999999998754322223457999999999975433 34688999999988776 47899999
Q ss_pred cCCeEEecC
Q 007957 392 QLGLQAVSN 400 (583)
Q Consensus 392 ~~GL~~v~~ 400 (583)
++|++.++.
T Consensus 228 ~~Gi~v~~~ 236 (249)
T PRK04328 228 DKGIVVYPD 236 (249)
T ss_pred CCCEEEEec
Confidence 999987764
No 19
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.93 E-value=2.1e-25 Score=246.02 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=166.7
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..|++| |+ ++||++|+||+++|++++|.|+||+|||||++|++...+.. +.+++|+++||+++|+..|++++
T Consensus 242 ~~~~~t-Gi--~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-----ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 242 NVRVSS-GV--VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-----KERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred ccccCC-Ch--HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEeeCCHHHHHHHHHHc
Confidence 458887 88 99999999999999999999999999999999999999874 67999999999999999999999
Q ss_pred cccccc------cccCC--------cccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 263 MIATEE------LFLYS--------STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 263 ~i~~~~------i~i~~--------~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
|++.++ +.+.. ++.++.+.+.+++.+|++|||||+++++.. . +..++++++..|.+++|+
T Consensus 314 g~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~-~-----~~~~~r~~~~~l~~~lk~ 387 (484)
T TIGR02655 314 GIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARG-V-----SNNAFRQFVIGVTGYAKQ 387 (484)
T ss_pred CCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHh-c-----CHHHHHHHHHHHHHHHhh
Confidence 998654 44332 345677888888999999999999998753 2 456778999999999999
Q ss_pred CCCcEEEecccCCc-cCc-CCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccCCeEEe
Q 007957 329 TNIPVLLAGHVTKS-GDI-AGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQLGLQAV 398 (583)
Q Consensus 329 ~g~tVIlisH~~k~-g~~-ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~GL~~v 398 (583)
.|+|++++...... +.. .....+++++|.|+.|...+. ...|.+.++|.|.+.+. .+..|.|++.|++..
T Consensus 388 ~~it~~~t~~~~~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~~~~~It~~Gi~v~ 462 (484)
T TIGR02655 388 EEITGFFTNTSDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPEIK 462 (484)
T ss_pred CCCeEEEeecccccccCCccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEccCCCCCCceEEEEEcCCcEEEc
Confidence 99999999654431 111 222467999999999975333 34677999999988775 588999999998854
No 20
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.93 E-value=3.7e-25 Score=220.51 Aligned_cols=200 Identities=31% Similarity=0.443 Sum_probs=155.8
Q ss_pred ccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccc
Q 007957 187 PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT 266 (583)
Q Consensus 187 ~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~ 266 (583)
+| || ++||++|+||+++|++++|.|+||+|||+|++|++...+.+. +.+|+|++.|++++++..++..++++.
T Consensus 2 ~T-GI--~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~ee~~~~l~~~~~s~g~d~ 74 (226)
T PF06745_consen 2 PT-GI--PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFEEPPEELIENMKSFGWDL 74 (226)
T ss_dssp ---SS--TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESSS-HHHHHHHHHTTTS-H
T ss_pred CC-Cc--hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEecCCHHHHHHHHHHcCCcH
Confidence 45 88 999999999999999999999999999999999998877631 578999999999999999999999875
Q ss_pred cc------cccCC---------cccHH----HHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 007957 267 EE------LFLYS---------STDIE----DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK 327 (583)
Q Consensus 267 ~~------i~i~~---------~~~~e----~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk 327 (583)
+. +.+++ ..+++ .+.+.++..+++++||||++.+.. ..+..+.+..+..|.+.++
T Consensus 75 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~------~~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 75 EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL------YDDPEELRRFLRALIKFLK 148 (226)
T ss_dssp HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT------SSSGGGHHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh------cCCHHHHHHHHHHHHHHHH
Confidence 43 22211 22343 445556677899999999998721 2255668889999999999
Q ss_pred cCCCcEEEecccCCccCcCCccchhe-eccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccCCeEEec
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEH-IVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQLGLQAVS 399 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~-~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~GL~~v~ 399 (583)
++|++++++.|.....+......+++ +||.||.|+.... ...|.|++.|+|..++. ....|+|++.|++.+.
T Consensus 149 ~~~~t~llt~~~~~~~~~~~~~~i~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~i~~ 224 (226)
T PF06745_consen 149 SRGVTTLLTSEMPSGSEDDGTFGIEHYLADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTGIHPFEITPGGIEIYP 224 (226)
T ss_dssp HTTEEEEEEEEESSSSSSSSSTSHHHHHSSEEEEEEEEEETTEEEEEEEEEEETTS----BEEEEEEETTEEEEET
T ss_pred HCCCEEEEEEccccCcccccccchhhhcccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCcEEEEEEECCeEEEec
Confidence 99999999999765545556667877 9999999985433 45789999999987764 5889999999998765
No 21
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.93 E-value=1.1e-24 Score=228.75 Aligned_cols=211 Identities=20% Similarity=0.265 Sum_probs=167.3
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCcc--CHHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEE--SVEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ee--s~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||++.|+++.|+|+||+|||+|++|++...+... ..+.+++++||++|+ +++++...+
T Consensus 105 ~~~isT-G~--~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia 181 (344)
T PLN03187 105 VVRITT-GS--QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA 181 (344)
T ss_pred CceecC-Cc--HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHH
Confidence 357887 88 999999999999999999999999999999999987765321 112246899999999 699999999
Q ss_pred Hhccccc----cccccCCcccHHHHH-------HHhcccCCCEEEEccchhhhhhcccCCCC---CHHHHHHHHHHHHHH
Q 007957 260 DRMMIAT----EELFLYSSTDIEDIV-------EKVQPLSPRALIIDSIQTVYLRGVAGSAG---GLMQVKECTSALLRF 325 (583)
Q Consensus 260 ~rl~i~~----~~i~i~~~~~~e~i~-------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g---~~~qvrei~~~L~~l 325 (583)
++++++. +++.+....+.+++. ..+.+.++++|||||+++++..++.+... ....+.+++..|.++
T Consensus 182 ~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 182 ERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred HHcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHH
Confidence 9999875 345555555544422 33445679999999999998765543211 123367788899999
Q ss_pred HHcCCCcEEEecccCCcc----------CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCe
Q 007957 326 AKKTNIPVLLAGHVTKSG----------DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g----------~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL 395 (583)
|+++|++||+++|++.+. ..+|+..+.|.+++.++|++++ ...|.+++.|+++.|.++ ..|.|++.|+
T Consensus 262 A~~~~vavvvTNqv~~~~~~~~~~~~~~~pagG~~~~h~~~~Rl~l~k~~-~~~R~~~v~ksp~lp~~~-~~f~It~~GI 339 (344)
T PLN03187 262 AEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGK-GEQRVCKVFDAPNLPEAE-AEFQITSGGI 339 (344)
T ss_pred HHHcCCEEEEEecEEEcCCcccccCCCCCCCCchhhheeeeEEEEEEcCC-CCeEEEEEEECCCCCCce-EEEEEeCCCc
Confidence 999999999999997643 2467889999999999999765 357999999999987766 6799999998
Q ss_pred EEe
Q 007957 396 QAV 398 (583)
Q Consensus 396 ~~v 398 (583)
...
T Consensus 340 ~d~ 342 (344)
T PLN03187 340 MDA 342 (344)
T ss_pred cCC
Confidence 754
No 22
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.93 E-value=1.3e-24 Score=216.51 Aligned_cols=206 Identities=23% Similarity=0.369 Sum_probs=152.2
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~r 261 (583)
++|++| |+ ++||++|+||+++|++++|+|+||+|||+|+++++...+.. +.+|+|+++| .+++.+...+..
T Consensus 2 ~~~i~t-Gi--~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-----~~~v~yi~~e~~~~~r~~~~~~~ 73 (225)
T PRK09361 2 DERLPT-GC--KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-----GKKVIYIDTEGLSPERFKQIAGE 73 (225)
T ss_pred CccccC-Cc--HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEECCCCCHHHHHHHHhh
Confidence 468887 88 99999999999999999999999999999999999998864 6899999999 344444333222
Q ss_pred -ccccccccccCCcccHHH-------HHHHhcccCCCEEEEccchhhhhhcccCCCCC---HHHHHHHHHHHHHHHHcCC
Q 007957 262 -MMIATEELFLYSSTDIED-------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG---LMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 262 -l~i~~~~i~i~~~~~~e~-------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~---~~qvrei~~~L~~lAk~~g 330 (583)
..-..+++.++...++++ +...+. .++++||||++++++.....+..+. ...+.+.+..|+++|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~ 152 (225)
T PRK09361 74 DFEELLSNIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHD 152 (225)
T ss_pred ChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000112344444333322 222222 6899999999998875433221111 2345666677999999999
Q ss_pred CcEEEecccCCcc-----CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEe
Q 007957 331 IPVLLAGHVTKSG-----DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398 (583)
Q Consensus 331 ~tVIlisH~~k~g-----~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v 398 (583)
++||+++|+.... ...|+..++|++|.++.|+..+ ...|.+.+.|+|..+.+....|+|++.|+..+
T Consensus 153 v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ii~l~~~~-~~~r~~~i~k~~~~~~~~~~~f~It~~Gi~~~ 224 (225)
T PRK09361 153 LAVVITNQVYSDIDSDGLRPLGGHTLEHWSKTILRLEKFR-NGKRRATLEKHRSRPEGESAEFRITDRGIEII 224 (225)
T ss_pred CEEEEEccceecCCCCcccCCCcchhhhhccEEEEEEEcc-CCeEEEEEEECCCCCCCCeEEEEEeCCcEecC
Confidence 9999999987542 2356778999999999998732 35588888999988878889999999998754
No 23
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=99.93 E-value=4.9e-25 Score=215.34 Aligned_cols=188 Identities=21% Similarity=0.351 Sum_probs=148.0
Q ss_pred cccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHH----HHHH
Q 007957 390 MSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRAD----MIIS 462 (583)
Q Consensus 390 It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~----~~v~ 462 (583)
++.+.++.+.+++.+.. ++... .+.+|.+.+++|....+.++.||+.+.+ |.+++.++|.. ++|+. ..++
T Consensus 2 i~~~~l~~~lg~~~~~~-~~~~~-~~~~G~v~GLa~~~~GG~~l~IE~~~~~-G~G~l~~tG~lg~v~kES~~~A~~~~k 78 (204)
T PF05362_consen 2 ITKEDLEEYLGPPRFDP-EKISK-EPKPGVVNGLAVTSMGGAVLPIEAQVIP-GKGKLIITGNLGDVMKESAKIAFSYLK 78 (204)
T ss_dssp E-TTTCHHHH-S-SS---SSSSS-SEETTEEEEEEEETTEEEEEEEEEEEEE-SSSEEEEESSBHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCccCc-ccccc-CCCCeEEEEEEEecCCCeEEEEEEeecc-CcceeEeecccchhHHHHHHHHHHHHH
Confidence 45566777887766543 33322 5689999999999999999999999998 67899999973 45543 3445
Q ss_pred HHHHhcCCC---cccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHH
Q 007957 463 VLMKQAGLK---LQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTV 538 (583)
Q Consensus 463 ~~~k~~g~~---~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A 538 (583)
...++.+.. +..+|+|||++.+ .+++|||++||+|+|++|++.++|++.+++++|||+|+|+|.||+|+.+|+.+|
T Consensus 79 ~~~~~~~~~~~~~~~~dihi~~~~~~~~~dGpSAgla~~~al~S~~~~~~v~~~ia~TG~i~~~G~V~~Vggl~eKl~~A 158 (204)
T PF05362_consen 79 ANLKRIGIDPSNFDNYDIHIHVPDGAIPKDGPSAGLAIALALYSALTGKPVRSDIAMTGEITLGGEVLPVGGLKEKLQAA 158 (204)
T ss_dssp HHHHCCSSTCCHHGCEEEEEEESSTTTTCCGGCCHHHHHHHHHHHHHT-EBETTEEE-BEE-TTSBEE--STHHHHHHHH
T ss_pred hhhcccccccccccceeEEEecccccccCCCchhHHHHHHHHHHHHcCCCCCCCeeEEEEecCCCceecccchhHHHHHH
Confidence 555555554 4578999999877 899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEeCCChhhhh---hcCCCCcEEEEeCCHHHHHHHhh
Q 007957 539 AKLGYRKCIVPKSAEKSLA---TLGFEQMEFIGCKNLKEVINVVF 580 (583)
Q Consensus 539 ~~~G~k~~ivP~~n~~e~~---~~~~~~i~v~~v~~l~e~~~~l~ 580 (583)
.+.|++++++|.+|..++. ..+..++++++|++++||+++++
T Consensus 159 ~~~G~k~vliP~~n~~~l~~vp~~i~~~i~i~~v~~i~ea~~~al 203 (204)
T PF05362_consen 159 KRAGAKRVLIPASNRKDLKEVPKEIKEKIEIIFVSTIDEALEIAL 203 (204)
T ss_dssp HHTT-SEEEEEGGGGGGCCTS-HHHHTSSEEEEESBHHHHHHHHB
T ss_pred HHcCCeEEEEcHHHHHHHHHhHHHHhCCcEEEEECCHHHHHHHHh
Confidence 9999999999999987752 23345899999999999999876
No 24
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.92 E-value=1.8e-24 Score=227.30 Aligned_cols=211 Identities=20% Similarity=0.314 Sum_probs=164.0
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCcc--CHHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEE--SVEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ee--s~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||+++|+++.|+|+||+|||+|+++++....... ..+.+++|+||++|+ +++.+...+
T Consensus 102 ~~~i~t-G~--~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 102 IIQITT-GS--RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cceeCC-CC--HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 357887 88 999999999999999999999999999999999997655311 011245899999999 688888888
Q ss_pred Hhccccc----cccccCCcccHHHHHH-------HhcccCCCEEEEccchhhhhhcccCCCCCH----HHHHHHHHHHHH
Q 007957 260 DRMMIAT----EELFLYSSTDIEDIVE-------KVQPLSPRALIIDSIQTVYLRGVAGSAGGL----MQVKECTSALLR 324 (583)
Q Consensus 260 ~rl~i~~----~~i~i~~~~~~e~i~~-------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~~~L~~ 324 (583)
++++++. +++.+....+.+++.+ .+...++++|||||+++++..++.+. +.. ..+.+++..|++
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~ 257 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQR 257 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHH
Confidence 8888875 3455544445444332 23556899999999999987654432 221 235678889999
Q ss_pred HHHcCCCcEEEecccCC--cc--Cc-------CCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccC
Q 007957 325 FAKKTNIPVLLAGHVTK--SG--DI-------AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k--~g--~~-------ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~ 393 (583)
+|++++++||+++|++. ++ .. +|...++|+++++|+|++.+ ...|.+++.|+++.|.++ ..|.|++.
T Consensus 258 lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~tRl~L~k~~-~~~R~~~v~ksp~~p~~e-~~F~I~~~ 335 (342)
T PLN03186 258 LADEFGVAVVITNQVVAQVDGSAFFAGPQLKPIGGNIMAHASTTRLALRKGR-GENRICKVISSPCLPEAE-ARFSISSE 335 (342)
T ss_pred HHHHcCCEEEEEcCEEEccCCccccCCCccccchhHHHHhhccEEEEEEecC-CCeEEEEEEECCCCCCeE-EEEEEECC
Confidence 99999999999999953 33 12 34459999999999999754 367999999999999888 89999999
Q ss_pred CeEEec
Q 007957 394 GLQAVS 399 (583)
Q Consensus 394 GL~~v~ 399 (583)
|+..+.
T Consensus 336 Gi~~~~ 341 (342)
T PLN03186 336 GVTDVK 341 (342)
T ss_pred ceecCC
Confidence 998653
No 25
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.92 E-value=3.5e-24 Score=223.17 Aligned_cols=209 Identities=20% Similarity=0.295 Sum_probs=162.7
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||++.|+++.|+|+||+|||+|++|++....... ..+.+.+|+|+++|++ ++++..++
T Consensus 75 ~~~isT-G~--~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 75 VLKITT-GS--QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred CceeCC-CC--HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 357887 88 999999999999999999999999999999999997654321 1123568999999994 89999999
Q ss_pred Hhcccccc----ccccCCcccHHH-------HHHHhcccCCCEEEEccchhhhhhcccCCCCCH----HHHHHHHHHHHH
Q 007957 260 DRMMIATE----ELFLYSSTDIED-------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL----MQVKECTSALLR 324 (583)
Q Consensus 260 ~rl~i~~~----~i~i~~~~~~e~-------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~~~L~~ 324 (583)
++++++.+ ++++....+.++ +...+...++++|||||+++++..+..+ .+.. ..+.+++..|.+
T Consensus 152 ~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~ 230 (313)
T TIGR02238 152 ERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNK 230 (313)
T ss_pred HHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHH
Confidence 99998754 444444333333 3333455689999999999998765543 2222 236788899999
Q ss_pred HHHcCCCcEEEecccCCccC-----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccC
Q 007957 325 FAKKTNIPVLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~ 393 (583)
+|++++++|++++|++.+.+ .+|...|+|+++++|+|++.+. ..|.+++.|.++-|.++ ..|.|++.
T Consensus 231 la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~-~~R~~~~~~sp~~p~~~-~~f~i~~~ 308 (313)
T TIGR02238 231 ISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRG-EERVAKLYDSPDMPEAE-ASFQITEG 308 (313)
T ss_pred HHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCC-CeEEEEEeeCCCCCCeE-EEEEEeCC
Confidence 99999999999999997622 2344599999999999997543 46899999999877655 68999999
Q ss_pred CeEE
Q 007957 394 GLQA 397 (583)
Q Consensus 394 GL~~ 397 (583)
|+..
T Consensus 309 Gi~~ 312 (313)
T TIGR02238 309 GIAD 312 (313)
T ss_pred cccC
Confidence 9864
No 26
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.92 E-value=2.4e-24 Score=224.89 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=162.8
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCcc--CHHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEE--SVEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ee--s~~qi~~R~ 259 (583)
..+++| |+ ++||++|+||+++|+++.|+|+||+|||+|+++++....... .++.+++|+||++|+ +++.+...+
T Consensus 75 ~~~~~t-g~--~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 75 VIQLTT-GS--KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cceeCC-CC--HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 457887 88 999999999999999999999999999999999998554211 111235899999999 577788888
Q ss_pred Hhccccccc----cccCCcccHHH-------HHHHhcccCCCEEEEccchhhhhhcccCCCCCH----HHHHHHHHHHHH
Q 007957 260 DRMMIATEE----LFLYSSTDIED-------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL----MQVKECTSALLR 324 (583)
Q Consensus 260 ~rl~i~~~~----i~i~~~~~~e~-------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~~~L~~ 324 (583)
++++++.+. +.+....+.++ +...+...++++|||||+++++..++.+. +.. ..+.+++..|++
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~ 230 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQR 230 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHH
Confidence 888877543 33433333333 23334456899999999999987655432 222 234688899999
Q ss_pred HHHcCCCcEEEecccCC--ccC----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeeccc
Q 007957 325 FAKKTNIPVLLAGHVTK--SGD----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQ 392 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k--~g~----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~ 392 (583)
+|++++++||+++|++. ++. .+|+..|+|+++++++|++.+. ..|.+++.|+|++|.++ ..|.|++
T Consensus 231 la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~~ri~l~k~~~-~~R~~~v~ksp~~p~~~-~~f~i~~ 308 (316)
T TIGR02239 231 LADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRG-EQRICKIYDSPCLPESE-AMFAIYE 308 (316)
T ss_pred HHHHhCCEEEEECceEEecCCccccccCCCCcCCchHHHHhhccEEEEEEecCC-CeEEEEEEECCCCCCeE-EEEEEeC
Confidence 99999999999999983 221 2457899999999999997653 56999999999999988 8999999
Q ss_pred CCeEEe
Q 007957 393 LGLQAV 398 (583)
Q Consensus 393 ~GL~~v 398 (583)
.|+...
T Consensus 309 ~Gi~~~ 314 (316)
T TIGR02239 309 DGIGDP 314 (316)
T ss_pred CceecC
Confidence 998764
No 27
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.92 E-value=1.1e-23 Score=210.22 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=153.0
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI 264 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i 264 (583)
|++| |+ ++||++|+||+++|++++|.|+||+|||||+++++...+.. +.+++|++.|++.+++..++.++++
T Consensus 1 ri~t-Gi--~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-----g~~~~~is~e~~~~~i~~~~~~~g~ 72 (229)
T TIGR03881 1 RLST-GV--EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-----GDPVIYVTTEESRESIIRQAAQFGM 72 (229)
T ss_pred CcCC-Ch--hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEEccCCHHHHHHHHHHhCC
Confidence 4666 88 99999999999999999999999999999999998876653 6789999999999999999988887
Q ss_pred cccc------cccCC-------------cccHHHHHHH----hcc--cCCCEEEEccchhhhhhcccCCCCCHHHHHHHH
Q 007957 265 ATEE------LFLYS-------------STDIEDIVEK----VQP--LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECT 319 (583)
Q Consensus 265 ~~~~------i~i~~-------------~~~~e~i~~~----i~~--~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~ 319 (583)
+.++ +.+++ ..+.+++... ++. .+++++|||+++.++.. .....++++
T Consensus 73 ~~~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~-------~~~~~r~~~ 145 (229)
T TIGR03881 73 DFEKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD-------KPAMARKYS 145 (229)
T ss_pred CHHHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc-------ChHHHHHHH
Confidence 6542 22211 1234444433 333 35789999999987632 233457788
Q ss_pred HHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeeccc-CCe
Q 007957 320 SALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQ-LGL 395 (583)
Q Consensus 320 ~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~-~GL 395 (583)
..|+++++++|+|+|+++|....++......++++||.|+.|+.... ...|.+++.|.|...+. ....|.|++ .|+
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi 225 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFRKVVVDGELRRYLIVEKMRQTNHDKRAWEIDIVPGKGL 225 (229)
T ss_pred HHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEEEeccCCcEEEEEEEEeccCCCCCCceeEEEEcCCCce
Confidence 88999999999999999997654433333568999999999985332 34688999999977664 478899984 788
Q ss_pred EE
Q 007957 396 QA 397 (583)
Q Consensus 396 ~~ 397 (583)
..
T Consensus 226 ~v 227 (229)
T TIGR03881 226 VL 227 (229)
T ss_pred EE
Confidence 74
No 28
>PHA02542 41 41 helicase; Provisional
Probab=99.92 E-value=3.4e-24 Score=234.29 Aligned_cols=200 Identities=23% Similarity=0.289 Sum_probs=153.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--h
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--R 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--r 261 (583)
..++| |+ ++||++++||+.+|++++|+|+||+|||||++++|..++.. +.+|+|||+||+.+++..|+. .
T Consensus 170 ~gi~T-G~--~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-----g~~Vl~fSLEM~~~ql~~Rl~a~~ 241 (473)
T PHA02542 170 NKIPF-KL--EILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-----GYNVLYISMEMAEEVIAKRIDANL 241 (473)
T ss_pred CccCC-Cc--HHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-----CCcEEEEeccCCHHHHHHHHHHHH
Confidence 46677 88 99999998999999999999999999999999999998753 679999999999999999883 2
Q ss_pred cccccc-----------------------ccccCC----cccHHHHHHHh---c-cc--CCCEEEEccchhhhhhccc-C
Q 007957 262 MMIATE-----------------------ELFLYS----STDIEDIVEKV---Q-PL--SPRALIIDSIQTVYLRGVA-G 307 (583)
Q Consensus 262 l~i~~~-----------------------~i~i~~----~~~~e~i~~~i---~-~~--~p~lVVIDsi~~l~~~~~~-~ 307 (583)
.+++.. ++++.. ..+..++...+ . +. ++++||||++|.+...... .
T Consensus 242 ~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~ 321 (473)
T PHA02542 242 LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVS 321 (473)
T ss_pred cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCC
Confidence 333321 222221 11233333332 2 12 3899999999987532111 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc---------cCcCCccchheeccEEEEEeCceec---eeeeEEEE
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS---------GDIAGPRVLEHIVDAVLYMEGEKFS---SYRLLRSV 375 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~---------g~~ag~~~Le~~aD~Vl~Le~~~~~---~~R~L~i~ 375 (583)
..+...++.++++.|+.+||+++++||+++|++++ +|+++++.+|+.||.|++|+++.++ ....+.+.
T Consensus 322 ~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~eliv~ 401 (473)
T PHA02542 322 SENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIETEELAQMGQQLVKQL 401 (473)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEecCcccccCCeEEEEEe
Confidence 23456789999999999999999999999999986 3678999999999999999886542 34678999
Q ss_pred ecccCCccccceeecc
Q 007957 376 KNRFGSTDELGVFEMS 391 (583)
Q Consensus 376 KnR~g~~~ei~~f~It 391 (583)
|||+|++++++.+.+.
T Consensus 402 KnR~G~~g~~g~v~l~ 417 (473)
T PHA02542 402 KSRYGDKNKFNKFLMG 417 (473)
T ss_pred cCCCCCCCCceEEEEE
Confidence 9999999865554443
No 29
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.91 E-value=2.2e-23 Score=207.46 Aligned_cols=198 Identities=20% Similarity=0.275 Sum_probs=151.1
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc-----
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE----- 268 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~----- 268 (583)
++||++|+||+++|++++|.|+||+|||+|+++++...+.. +++|+|++.|++++++..++..++++.+.
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-----g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~ 77 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-----GEKAMYISLEEREERILGYAKSKGWDLEDYIDKS 77 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCC
Confidence 89999999999999999999999999999999999887764 68999999999999999999999886532
Q ss_pred cccCC--ccc----HHH----HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 269 LFLYS--STD----IED----IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 269 i~i~~--~~~----~e~----i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
+++++ ..+ +++ +...+.+.+++++|||+++.+.. . .++....++.+..+.+..++.|+|+++++|
T Consensus 78 l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~-~----~~~~~~~r~~l~~l~~~lk~~~~tvll~s~ 152 (224)
T TIGR03880 78 LYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLET-L----FDDDAERRTELFRFYSSLRETGVTTILTSE 152 (224)
T ss_pred eEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhh-h----cCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 33332 111 222 33345667899999999987631 1 124444556666666666788999999999
Q ss_pred cCCccCcC-CccchheeccEEEEEeCcee----ceeeeEEEEecccCCcc-ccceeecccCCeEEecCC
Q 007957 339 VTKSGDIA-GPRVLEHIVDAVLYMEGEKF----SSYRLLRSVKNRFGSTD-ELGVFEMSQLGLQAVSNP 401 (583)
Q Consensus 339 ~~k~g~~a-g~~~Le~~aD~Vl~Le~~~~----~~~R~L~i~KnR~g~~~-ei~~f~It~~GL~~v~~p 401 (583)
.+...... ....++++||.|+.|+.... ...|.++++|+|...+. ....|.|++.|++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~~~~~~i~~~Gi~v~~~~ 221 (224)
T TIGR03880 153 ADKTNVFASKYGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSREIKPYEITDSGITVYSEA 221 (224)
T ss_pred ccCCCCCccCCCceEEEEeEEEEEeeeecccCcceEEEEEEEEccCCCCCCceEEEEEcCCcEEEeccC
Confidence 87543222 23558999999999974332 23457999999987664 588999999999977643
No 30
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.91 E-value=1.4e-23 Score=219.10 Aligned_cols=207 Identities=23% Similarity=0.380 Sum_probs=161.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCcc--CHHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEE--SVEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ee--s~~qi~~R~~ 260 (583)
.++.| |+ +.+|++|+||++.|++++|+|+||+|||+|++|++...+.... .+.+++|+||++|+ +++.+...++
T Consensus 75 ~~~~T-g~--~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 75 GKITT-GS--KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred CeecC-CC--HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 45666 77 8999999999999999999999999999999999988764211 11235899999999 6888888888
Q ss_pred hcccccc----ccccCCccc-------HHHHHHHhcccC--CCEEEEccchhhhhhcccCCCCCH----HHHHHHHHHHH
Q 007957 261 RMMIATE----ELFLYSSTD-------IEDIVEKVQPLS--PRALIIDSIQTVYLRGVAGSAGGL----MQVKECTSALL 323 (583)
Q Consensus 261 rl~i~~~----~i~i~~~~~-------~e~i~~~i~~~~--p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~~~L~ 323 (583)
.++++.+ +++++...+ ++++.+.+...+ +++|||||+++++..++.+. ++. ..++.++..|.
T Consensus 152 ~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~ 230 (310)
T TIGR02236 152 ARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLL 230 (310)
T ss_pred HcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHH
Confidence 8877642 344433222 344555666553 88999999999877655432 222 22567778899
Q ss_pred HHHHcCCCcEEEecccCCcc--------CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCe
Q 007957 324 RFAKKTNIPVLLAGHVTKSG--------DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395 (583)
Q Consensus 324 ~lAk~~g~tVIlisH~~k~g--------~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL 395 (583)
.+|++++++||+++|++... ..+|+..++|+++++|.|++.. ...|.+++.|+|+++.++. .|.|++.|+
T Consensus 231 ~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~~~G~~~~h~~~~rl~l~~~~-~~~R~~~~~k~~~~~~~~~-~f~i~~~Gi 308 (310)
T TIGR02236 231 RLADLYNAAVVVTNQVMARPDAFFGDPTRPIGGHILGHAATFRVYLRKGK-GDKRIARLVDSPHLPEGEA-VFRITEKGI 308 (310)
T ss_pred HHHHHhCcEEEEeceeeecCccccCccccCCcchhhhhheeEEEEEEecC-CCeEEEEEEECCCCCCeeE-EEEEeCCCc
Confidence 99999999999999998652 3468899999999999999743 3569999999999999887 699999997
Q ss_pred E
Q 007957 396 Q 396 (583)
Q Consensus 396 ~ 396 (583)
.
T Consensus 309 ~ 309 (310)
T TIGR02236 309 E 309 (310)
T ss_pred c
Confidence 5
No 31
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.91 E-value=1e-23 Score=208.86 Aligned_cols=201 Identities=21% Similarity=0.342 Sum_probs=143.2
Q ss_pred ccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHh-ccc
Q 007957 187 PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADR-MMI 264 (583)
Q Consensus 187 ~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~r-l~i 264 (583)
+| |+ ++||++|+||+++|++++|.|+||+|||||+++++...+.. +.+|+|+++|+... .+...+.. ..-
T Consensus 2 ~T-Gi--~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-----g~~v~yi~~e~~~~~~~~~~~~~~~~~ 73 (218)
T cd01394 2 PT-GC--KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-----GKKVAYIDTEGLSSERFRQIAGDRPER 73 (218)
T ss_pred Cc-ch--hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHhHChHh
Confidence 45 88 99999999999999999999999999999999999998764 67999999987543 22221111 110
Q ss_pred cccccccCCcccHHHHHH---H---hcccCCCEEEEccchhhhhhcccCCCC---CHHHHHHHHHHHHHHHHcCCCcEEE
Q 007957 265 ATEELFLYSSTDIEDIVE---K---VQPLSPRALIIDSIQTVYLRGVAGSAG---GLMQVKECTSALLRFAKKTNIPVLL 335 (583)
Q Consensus 265 ~~~~i~i~~~~~~e~i~~---~---i~~~~p~lVVIDsi~~l~~~~~~~~~g---~~~qvrei~~~L~~lAk~~g~tVIl 335 (583)
...++.++...++.++.. . +...++++||||++++++......... ...++++++..|+.+|++++++||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~ 153 (218)
T cd01394 74 AASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVI 153 (218)
T ss_pred hhcCEEEEeCCCHHHHHHHHHHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 123444444443332221 1 112358999999999987544332211 1235566777889999999999999
Q ss_pred ecccCCccC-----cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 336 AGHVTKSGD-----IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 336 isH~~k~g~-----~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
++|++...+ ..|+..++|++|.|+.|++.+. ..|...+.|+|..+.++...|.|++.|++
T Consensus 154 t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~~-~~r~~~~~~~~~~~~~~~~~f~It~~Gi~ 218 (218)
T cd01394 154 TNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLRV-GTRRAVLEKHRFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred ecCCEEcCCCCcccccCCcchhcceeEEEEEEEcCC-CeEEEEEeeCCCCCCCceEEEEEeCCccC
Confidence 999874321 3456689999999999987652 34444466777777778899999999874
No 32
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-25 Score=233.33 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=141.0
Q ss_pred eeEEEEEEEeecCCCceEEEechh---HHHHHHHHHHHHHhcCCCcccccEEEEecCC-cccccccccHHHHHHHHHccc
Q 007957 430 SFLIEIQALCVSGSTVSRHVNGIQ---ASRADMIISVLMKQAGLKLQENAIFLNVVSG-VALTETAGDLAVAAAICSSFL 505 (583)
Q Consensus 430 ~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~v~~~~k~~g~~~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~ 505 (583)
+.+|+||++++. |+|.+++||++ ++|+++||+++.+|+||.||.++|+|||+|+ ++|.|+.+||+||++|+++..
T Consensus 2 a~~V~VEv~~s~-glp~~~iVGL~d~av~EsreRVraal~nsgf~~P~~ritiNLaPadl~KeG~~fDLpIal~ilaa~~ 80 (490)
T COG0606 2 APPVEVEVDISN-GLPGFTIVGLPDTAVKESRERVRAALTNSGFEFPAKRITINLAPADLPKEGSRFDLPIALGILAASG 80 (490)
T ss_pred CCccceEEEecC-CCcceeeeecCcHHHHHHHHHHHHHHHhcCCCCChHHeeeccCcccccccccccchHHHHHHHHhcc
Confidence 468999999999 79999999997 9999999999999999999999999999999 899999999999999999997
Q ss_pred CCC--CCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhhhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957 506 EFP--IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 506 ~~~--~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~~~~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
.+| ...++.|+|||+|||.||+|+|+++.+.+|.+.+.+.+++|++|..| +.++++++|+++++|.|++++|..
T Consensus 81 ~~~~~~l~~~~~lGEL~LdG~l~~v~G~lp~~~~a~~~~~~~~i~p~~n~~E--asli~~~~v~~~~~l~ev~~~l~g 156 (490)
T COG0606 81 QLPADALILYEFLGELSLDGLLRPVGGVLPAALAAKEKGKRGLIVPKENAEE--ASLIGGLPVYGARYLEEVVNFLEG 156 (490)
T ss_pred ccchhhhhhHHhhhhhhccCcccccCCcchhHHHHhhccCCcEEcchhcccc--ccccCCCCccchhhHHHHHHHhcC
Confidence 765 56899999999999999999999999999999999999999999988 778999999999999999998853
No 33
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.91 E-value=2.1e-23 Score=205.15 Aligned_cols=194 Identities=24% Similarity=0.354 Sum_probs=148.4
Q ss_pred hhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhc-cccccccccCC
Q 007957 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRM-MIATEELFLYS 273 (583)
Q Consensus 196 LD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl-~i~~~~i~i~~ 273 (583)
||++|+||+++|++++|+|+||+|||+|+++++...+.. +.+|+|+++|+ +++.+...+... ....+++.++.
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-----g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~ 75 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ-----GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFE 75 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEE
Confidence 699999999999999999999999999999999988764 67999999996 888777766543 21224444443
Q ss_pred ccc-------HHHHHHHhcccCCCEEEEccchhhhhhcccCCCC-CHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc--
Q 007957 274 STD-------IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAG-GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG-- 343 (583)
Q Consensus 274 ~~~-------~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g-~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g-- 343 (583)
..+ ++.+.+.+...++++|||||+++++.....+... ...++.+++..|.++++++++++|+++|++...
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~ 155 (209)
T TIGR02237 76 VFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNN 155 (209)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCC
Confidence 333 3334444556689999999999987544322211 133566777889999999999999999986431
Q ss_pred ---CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 344 ---DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 344 ---~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
..+|+..++|++|.|+.|+..+ ..|.+.+.|+++.+.++...|.|++.|++
T Consensus 156 ~~~~~~gg~~~~~~~d~vi~l~~~~--~~r~~~i~k~~~~~~~~~~~f~It~~Gi~ 209 (209)
T TIGR02237 156 GTLRPLGGHLLEHWSKVILRLEKFR--GRRLATLEKHRSRPEGESVYFRITDDGIE 209 (209)
T ss_pred CCCcCCCcchhheeeeEEEEEEecC--CEEEEEEEECCCCCCCCeEEEEEeCCccC
Confidence 2356678999999999998763 45777788888888778899999999974
No 34
>PTZ00035 Rad51 protein; Provisional
Probab=99.91 E-value=4.5e-23 Score=217.07 Aligned_cols=212 Identities=20% Similarity=0.283 Sum_probs=164.0
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh-cCCCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV-HDLGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~-~~~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||+++|+++.|+|+||+|||+|+++++...... ...+.+++++|+++|++ ++.+...+
T Consensus 97 ~~~isT-G~--~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 97 IIRITT-GS--TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred CccccC-Cc--HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 357887 88 99999999999999999999999999999999998876521 11123568999999984 77788888
Q ss_pred Hhccccc----cccccCCcccHHHHH-------HHhcccCCCEEEEccchhhhhhcccCCCC---CHHHHHHHHHHHHHH
Q 007957 260 DRMMIAT----EELFLYSSTDIEDIV-------EKVQPLSPRALIIDSIQTVYLRGVAGSAG---GLMQVKECTSALLRF 325 (583)
Q Consensus 260 ~rl~i~~----~~i~i~~~~~~e~i~-------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g---~~~qvrei~~~L~~l 325 (583)
++++++. +++.+....+.++.. ..+...++++|||||+++++..++.+... ....+.+++..|+++
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~l 253 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKL 253 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 8888765 344444444433322 33445689999999999988765533211 122356788999999
Q ss_pred HHcCCCcEEEecccCCcc-----------CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCC
Q 007957 326 AKKTNIPVLLAGHVTKSG-----------DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g-----------~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~G 394 (583)
|++++++||+++|++..- ..+|...+.|.+++.++|++++. ..|.+++.|+++.|.++ ..|.|++.|
T Consensus 254 a~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~-~~R~~~i~ksp~~p~~~-~~f~It~~G 331 (337)
T PTZ00035 254 ADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRG-EQRICKIYDSPNLPESE-AVFAISEGG 331 (337)
T ss_pred HHHcCcEEEEecceEEecCCccccCCCCccCCchHHHHhheeEEEEEEecCC-CeeEEEEEECCCCCCee-EEEEEeCCc
Confidence 999999999999998641 13577899999999999997653 56999999999998887 589999999
Q ss_pred eEEec
Q 007957 395 LQAVS 399 (583)
Q Consensus 395 L~~v~ 399 (583)
+..+.
T Consensus 332 i~~~~ 336 (337)
T PTZ00035 332 IIDAK 336 (337)
T ss_pred cccCC
Confidence 97653
No 35
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.90 E-value=4.9e-23 Score=215.77 Aligned_cols=207 Identities=23% Similarity=0.348 Sum_probs=161.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCcc--CHHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEE--SVEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ee--s~~qi~~R~~ 260 (583)
.+++| |+ ++||++|+||++.|++++|+|+||+|||+|++|++...+.... .+.+.+|+|+++|+ +++++...++
T Consensus 82 ~~~~T-g~--~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 82 GKITT-GS--KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred CccCC-CC--HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 46666 77 9999999999999999999999999999999999988764311 12346899999999 5889999998
Q ss_pred hcccccc----ccccCCccc-------HHHHHHHhcc-cCCCEEEEccchhhhhhcccCCCCC----HHHHHHHHHHHHH
Q 007957 261 RMMIATE----ELFLYSSTD-------IEDIVEKVQP-LSPRALIIDSIQTVYLRGVAGSAGG----LMQVKECTSALLR 324 (583)
Q Consensus 261 rl~i~~~----~i~i~~~~~-------~e~i~~~i~~-~~p~lVVIDsi~~l~~~~~~~~~g~----~~qvrei~~~L~~ 324 (583)
+++++.+ +++++...+ ++.+...+.. .++++|||||+++++..+..+. ++ ...+++++..|.+
T Consensus 159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~ 237 (317)
T PRK04301 159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLR 237 (317)
T ss_pred HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHH
Confidence 8887653 344433322 2334444555 6789999999999886654332 22 2335678889999
Q ss_pred HHHcCCCcEEEecccCCcc--------CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 325 FAKKTNIPVLLAGHVTKSG--------DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g--------~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
+|++++++||+++|++... ..+|...+.|.++++|.|++.+. ..|.+++.|+++++.++. .|.|++.|+.
T Consensus 238 la~~~~vavl~tnqv~~~~~~~~~~~~~~~~G~~~~~~~~~rl~l~k~~~-~~R~~~v~k~~~~~~~~~-~f~I~~~Gi~ 315 (317)
T PRK04301 238 LADLYNAAVVVTNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLRKSKG-NKRIARLVDSPHLPEGEA-VFRITEEGIR 315 (317)
T ss_pred HHHHhCCEEEEeceEEeccccccCccccCCcchHhHhheeEEEEEEecCC-CceEEEEEeCCCCCCceE-EEEEeCCccc
Confidence 9999999999999987542 24677889999999999997542 469999999999988876 8999999975
No 36
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.90 E-value=4.2e-23 Score=207.30 Aligned_cols=187 Identities=25% Similarity=0.397 Sum_probs=143.8
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--hcccccc-----
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--RMMIATE----- 267 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--rl~i~~~----- 267 (583)
+||++++ |+++|++++|+|+||+|||+|+++++..++.. .+.+|+|+|.|++++++..|+. ..+++..
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~ 76 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTG 76 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcC
Confidence 6899996 99999999999999999999999999998875 2679999999999999999873 2333321
Q ss_pred --------------------ccccC--CcccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH
Q 007957 268 --------------------ELFLY--SSTDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA 321 (583)
Q Consensus 268 --------------------~i~i~--~~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~ 321 (583)
++++. ...+++++.+.+ .++++++||||+++.+.... ........+..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~~~~~~~~~~~~~~ 154 (242)
T cd00984 77 SLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KKGNRQQEVAEISRS 154 (242)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CCCCHHHHHHHHHHH
Confidence 11111 112345444443 45589999999999765322 122345678899999
Q ss_pred HHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCcee-------ceeeeEEEEecccCCcc
Q 007957 322 LLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKF-------SSYRLLRSVKNRFGSTD 383 (583)
Q Consensus 322 L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~-------~~~R~L~i~KnR~g~~~ 383 (583)
|+++|+++|+++|+++|+++. .+++|+..+++.||.|+.|+++.. ...-.+.+.|||+|+.+
T Consensus 155 L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g 234 (242)
T cd00984 155 LKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTG 234 (242)
T ss_pred HHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCe
Confidence 999999999999999999874 245678899999999999987652 23457999999999888
Q ss_pred cccee
Q 007957 384 ELGVF 388 (583)
Q Consensus 384 ei~~f 388 (583)
++...
T Consensus 235 ~~~l~ 239 (242)
T cd00984 235 TVELR 239 (242)
T ss_pred eEEEE
Confidence 76543
No 37
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.90 E-value=1.5e-22 Score=225.02 Aligned_cols=206 Identities=21% Similarity=0.313 Sum_probs=163.2
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
.|++| |+ +.||++|+||+++|++++|.|+||+|||+|++|++...+.. .+.+|+|+++|++++++..++..++
T Consensus 11 ~ri~T-GI--~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~----~ge~~lyis~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 11 EKLPT-GI--EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR----FDEPGVFVTFEESPEDIIRNVASFG 83 (509)
T ss_pred ccccC-Cc--hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCCEEEEEccCCHHHHHHHHHHcC
Confidence 58888 88 99999999999999999999999999999999999887763 2578999999999999999999999
Q ss_pred cccccc------ccCC------------ccc----HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH
Q 007957 264 IATEEL------FLYS------------STD----IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA 321 (583)
Q Consensus 264 i~~~~i------~i~~------------~~~----~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~ 321 (583)
++.+++ .+.+ ..+ ++.+.+.+...+++.+||||++.++.. ..+..+++..+..
T Consensus 84 ~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~-----~d~~~~~r~~l~~ 158 (509)
T PRK09302 84 WDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG-----FSNEAVVRRELRR 158 (509)
T ss_pred CCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh-----ccCHHHHHHHHHH
Confidence 875432 2111 112 344566677889999999999986531 1245566778888
Q ss_pred HHHHHHcCCCcEEEecccCCc-cCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCccc-cceeecccCCeEE
Q 007957 322 LLRFAKKTNIPVLLAGHVTKS-GDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTDE-LGVFEMSQLGLQA 397 (583)
Q Consensus 322 L~~lAk~~g~tVIlisH~~k~-g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~e-i~~f~It~~GL~~ 397 (583)
|.+.+++.|+|+|+++|.... +.+......+++||.|+.|+.... ...|.|++.|+|..++.. ...|.|++.|+..
T Consensus 159 L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~v 238 (509)
T PRK09302 159 LFAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFTITEDGISV 238 (509)
T ss_pred HHHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEeEEccCCeEEEEEEEEECCCCCcCCccEEEEECCCcEEE
Confidence 888889999999999998752 334444566899999999985332 246999999999766543 6889999999998
Q ss_pred ecCC
Q 007957 398 VSNP 401 (583)
Q Consensus 398 v~~p 401 (583)
++..
T Consensus 239 ~p~~ 242 (509)
T PRK09302 239 LPLT 242 (509)
T ss_pred Eecc
Confidence 7653
No 38
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.90 E-value=9e-23 Score=202.86 Aligned_cols=196 Identities=23% Similarity=0.318 Sum_probs=145.9
Q ss_pred ccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHHHhcc
Q 007957 187 PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRADRMM 263 (583)
Q Consensus 187 ~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~~rl~ 263 (583)
+| |+ ++||++|+||+++|+++.|.|+||+|||+|+++++........ .+.+.+|+|+++|++ ++.+...++.++
T Consensus 2 ~t-G~--~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~ 78 (226)
T cd01393 2 ST-GS--KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFG 78 (226)
T ss_pred CC-Cc--HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhc
Confidence 45 88 9999999999999999999999999999999999998765310 112378999999986 555655555554
Q ss_pred cc----ccccccCCcccHHHHHHH-------hcccCCCEEEEccchhhhhhcccCCC---CCHHHHHHHHHHHHHHHHcC
Q 007957 264 IA----TEELFLYSSTDIEDIVEK-------VQPLSPRALIIDSIQTVYLRGVAGSA---GGLMQVKECTSALLRFAKKT 329 (583)
Q Consensus 264 i~----~~~i~i~~~~~~e~i~~~-------i~~~~p~lVVIDsi~~l~~~~~~~~~---g~~~qvrei~~~L~~lAk~~ 329 (583)
.+ .+++++....+.+++... +...++++||||+++.++........ .....+++++..|+.+|+++
T Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~ 158 (226)
T cd01393 79 LDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKF 158 (226)
T ss_pred cchhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 244555544444433322 22558999999999998754432221 11245677889999999999
Q ss_pred CCcEEEecccCCccC--------cCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcccc
Q 007957 330 NIPVLLAGHVTKSGD--------IAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTDEL 385 (583)
Q Consensus 330 g~tVIlisH~~k~g~--------~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~ei 385 (583)
+++||+++|++..-+ .+++..+.|.+|.+++|++... ...|.+.++|+++.|.++.
T Consensus 159 ~~~vi~tnq~~~~~~~~~~~~~~p~~G~~~~~~~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~~~~ 224 (226)
T cd01393 159 NVAVVFTNQVRAKVDVMFGDPETPAGGNALAHASTTRLDLRKGRGIIGERRIAKVVKSPALPEAEA 224 (226)
T ss_pred CcEEEEEEEEeeecccccCCCccccCchhhhCcccEEEEEEecCCccCcEEEEEEEeCCCCCCccc
Confidence 999999999976421 3567899999999999987553 2678899999999887764
No 39
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.90 E-value=1.2e-22 Score=224.05 Aligned_cols=204 Identities=23% Similarity=0.245 Sum_probs=155.9
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI 264 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i 264 (583)
|++| || +.||++|+||+++|++++|.|+||+|||||++|++...+.+ .+.+++|+++||+++++..++..+++
T Consensus 2 r~~T-GI--~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~----~ge~~lyvs~eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 2 KIRT-MI--EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH----FDEPGVFVTFEESPQDIIKNARSFGW 74 (484)
T ss_pred cCCC-Cc--hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEEEEecCHHHHHHHHHHcCC
Confidence 7787 88 99999999999999999999999999999999998876653 15799999999999999999999998
Q ss_pred cccc------cccCC------------ccc----HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH
Q 007957 265 ATEE------LFLYS------------STD----IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL 322 (583)
Q Consensus 265 ~~~~------i~i~~------------~~~----~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L 322 (583)
+.++ +.+++ ..+ ++++...+...+++.|+||++..++.. +......++.+..|
T Consensus 75 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~-----~~~~~~~r~~l~~L 149 (484)
T TIGR02655 75 DLQKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQ-----YDAVSVVRREIFRL 149 (484)
T ss_pred CHHHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhh-----cCchHHHHHHHHHH
Confidence 7643 22221 122 234555667779999999999886531 12334455555556
Q ss_pred HHHHHcCCCcEEEecccCCc-cCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccCCeEEe
Q 007957 323 LRFAKKTNIPVLLAGHVTKS-GDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQLGLQAV 398 (583)
Q Consensus 323 ~~lAk~~g~tVIlisH~~k~-g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~GL~~v 398 (583)
.+..++.|+|+|+++|.... ++.......+++||.|+.|+.... ...|.|+++|+|..++. ....|.|++.|++.+
T Consensus 150 i~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~~~~~~~~~R~l~I~K~Rgs~~~~~~~~~~It~~Gi~v~ 229 (484)
T TIGR02655 150 VARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIF 229 (484)
T ss_pred HHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEEEecCCEEEEEEEEEECCCCCcCCceEEEEEcCCcEEEE
Confidence 66667789999999998754 233333445999999999974222 24588999999976654 467899999999986
Q ss_pred cC
Q 007957 399 SN 400 (583)
Q Consensus 399 ~~ 400 (583)
+.
T Consensus 230 p~ 231 (484)
T TIGR02655 230 PL 231 (484)
T ss_pred ec
Confidence 54
No 40
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.90 E-value=1.1e-22 Score=203.50 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=153.5
Q ss_pred ccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHHHhcc
Q 007957 187 PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRADRMM 263 (583)
Q Consensus 187 ~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~~rl~ 263 (583)
+| |+ ++||++|+||+++|+++.|.|+||+|||+|+++++........ .+.+.+|+|+++|++ .+.+...++.++
T Consensus 2 ~t-G~--~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~ 78 (235)
T cd01123 2 TT-GS--KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFG 78 (235)
T ss_pred CC-Cc--hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhc
Confidence 45 88 9999999999999999999999999999999999987554210 112468999999984 556666666655
Q ss_pred cccc----ccccCCccc-------HHHHHHHhccc-CCCEEEEccchhhhhhcccCCC---CCHHHHHHHHHHHHHHHHc
Q 007957 264 IATE----ELFLYSSTD-------IEDIVEKVQPL-SPRALIIDSIQTVYLRGVAGSA---GGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 264 i~~~----~i~i~~~~~-------~e~i~~~i~~~-~p~lVVIDsi~~l~~~~~~~~~---g~~~qvrei~~~L~~lAk~ 328 (583)
++.+ ++++....+ ++.+.+.+.+. ++++||||++++++.....+.. .....+.+++..|+++|++
T Consensus 79 ~~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~ 158 (235)
T cd01123 79 LDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE 158 (235)
T ss_pred cChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 344433322 23344455666 8999999999998754443321 2334577889999999999
Q ss_pred CCCcEEEecccCCccC-----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 329 TNIPVLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 329 ~g~tVIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
++++||+++|++...+ .++...+.|.++..+++++.. ...|.++++|++..+ .....|.|++.|++
T Consensus 159 ~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~-~~~r~~~i~k~~~~~-~~~~~f~It~~Gi~ 235 (235)
T cd01123 159 FNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGR-GEERIAKIVDSPHLP-EGEAVFAITEEGIR 235 (235)
T ss_pred hCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECC-CCceEEEEeeCCCCC-CceEEEEEeCCccC
Confidence 9999999999875321 245678999999999998764 356999999999887 45679999999873
No 41
>PRK09165 replicative DNA helicase; Provisional
Probab=99.89 E-value=7.7e-23 Score=225.79 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=152.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC----------CCCCccEEEEeCccCHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD----------LGEPSPVVYVSGEESVE 253 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~----------~~~~~~VLyis~Ees~~ 253 (583)
.+++| |+ .+||+++ ||+.+|++++|+|+||+|||+|+++++..++.... ..++.+|+|||+||+.+
T Consensus 198 ~gi~T-G~--~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 198 SGIST-GL--RDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CcccC-Ch--HHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 46777 88 9999998 68999999999999999999999999999875311 01257899999999999
Q ss_pred HHHHHHHh--ccccccc-------------------------cccCC--cccHHHHHHHh----cccCCCEEEEccchhh
Q 007957 254 QIGNRADR--MMIATEE-------------------------LFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTV 300 (583)
Q Consensus 254 qi~~R~~r--l~i~~~~-------------------------i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l 300 (583)
++..|+.. .+++... +++.+ ..++++|...+ .++++++||||++|.+
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli 353 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 99999733 2333221 22221 12345554443 3457999999999977
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec--
Q 007957 301 YLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-- 367 (583)
Q Consensus 301 ~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-- 367 (583)
.........+...++.++++.|+.+||+++++||+++|+++. .|+++++.||+.||.|++|+++.++
T Consensus 354 ~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~ 433 (497)
T PRK09165 354 RGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVYREEYYLK 433 (497)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEeehhhhcc
Confidence 533211123345689999999999999999999999999975 3688999999999999999875432
Q ss_pred ----------------------eeeeEEEEecccCCcccccee
Q 007957 368 ----------------------SYRLLRSVKNRFGSTDELGVF 388 (583)
Q Consensus 368 ----------------------~~R~L~i~KnR~g~~~ei~~f 388 (583)
..-.+.+.|||+|+++.+...
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~~~ 476 (497)
T PRK09165 434 RKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLA 476 (497)
T ss_pred ccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEEEE
Confidence 124577899999999876543
No 42
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.89 E-value=1.3e-22 Score=207.49 Aligned_cols=192 Identities=24% Similarity=0.336 Sum_probs=145.9
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-- 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl-- 262 (583)
+++| |+ +.||+++ ||+.+|++++|+|+||+|||||+.+++..++.. .+.+|+|+|.|++.+++..|+...
T Consensus 12 ~~~t-g~--~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 12 EVWW-PF--PVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISLEEPVVRTARRLLGQYA 83 (271)
T ss_pred CCCC-Cc--ceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEcccCHHHHHHHHHHHHh
Confidence 5666 88 9999998 899999999999999999999999999998764 267899999999999998887443
Q ss_pred cccc------------------------cccccCC---cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCCC
Q 007957 263 MIAT------------------------EELFLYS---STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 263 ~i~~------------------------~~i~i~~---~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
+++. ..+++++ ..+++++++.+ ..+++++||||+++.+..... .....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~~~~ 162 (271)
T cd01122 84 GKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-ASGDE 162 (271)
T ss_pred CCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-CchhH
Confidence 2211 1122322 12455554443 467899999999998753221 11223
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCcc--------------CcCCccchheeccEEEEEeCcee-----ceeeeE
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSG--------------DIAGPRVLEHIVDAVLYMEGEKF-----SSYRLL 372 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g--------------~~ag~~~Le~~aD~Vl~Le~~~~-----~~~R~L 372 (583)
...+..++..|+++|++++++|++++|.++.. +++|+..+++.||.|+.|++... ...+.+
T Consensus 163 ~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~~~~i 242 (271)
T cd01122 163 RKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYL 242 (271)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCCcEEE
Confidence 44567889999999999999999999998742 36778899999999999986542 356789
Q ss_pred EEEecccC-Ccccc
Q 007957 373 RSVKNRFG-STDEL 385 (583)
Q Consensus 373 ~i~KnR~g-~~~ei 385 (583)
+++|+|++ .++..
T Consensus 243 ~v~K~R~~~~~g~~ 256 (271)
T cd01122 243 RILKNRFTGGTGVA 256 (271)
T ss_pred EEEeeccCCCccce
Confidence 99999985 55553
No 43
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.89 E-value=2.4e-22 Score=201.44 Aligned_cols=200 Identities=23% Similarity=0.295 Sum_probs=152.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
+|++| |+ +.||++|+||+++|++++|.|+||+|||+|+.+++...+.. +.+|+|++.|++++++..++.+++
T Consensus 5 ~~~~t-Gi--~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 5 EIIST-GN--EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----GKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred eEEec-CC--HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----CCEEEEEEcCCCHHHHHHHHHHCC
Confidence 47887 88 99999999999999999999999999999999998887663 789999999999999999999998
Q ss_pred ccccccc------cC---------Cccc----HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHH
Q 007957 264 IATEELF------LY---------SSTD----IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR 324 (583)
Q Consensus 264 i~~~~i~------i~---------~~~~----~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~ 324 (583)
++..+.. ++ ...+ ++.+.+.+.+.+++++||||++.+... .+...+++++..|..
T Consensus 77 ~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~------~~~~~~~~~l~~l~~ 150 (234)
T PRK06067 77 IDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY------AEEDDILNFLTEAKN 150 (234)
T ss_pred CChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc------CCHHHHHHHHHHHHH
Confidence 8754321 11 0111 344555666779999999999976421 244556777777766
Q ss_pred HHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc--ccceeeccc-CCeEEec
Q 007957 325 FAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD--ELGVFEMSQ-LGLQAVS 399 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~--ei~~f~It~-~GL~~v~ 399 (583)
+++ .++++++++|...... .....+++++|.++.|+.... ...|.|++.|.|..++. ....|.+++ .|++.++
T Consensus 151 l~~-~g~tvllt~~~~~~~~-~~~~~~~~l~DgvI~L~~~~~~~~~~r~l~i~K~Rg~~~~~~~~~~~~I~~~~Gi~v~~ 228 (234)
T PRK06067 151 LVD-LGKTILITLHPYAFSE-ELLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKLRGARKTTGNIISFDVDPAFGIKIIP 228 (234)
T ss_pred HHh-CCCEEEEEecCCcCCH-HHHHHHHhheEEEEEEEeeccCCEEeEEEEEEhhcCCCCCCCCEEEEEEcCCCCeEEEE
Confidence 655 5889999988753211 111347899999999985432 35688999999977664 577999987 6998765
No 44
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.89 E-value=1.1e-22 Score=221.12 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=149.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--h
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--R 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--r 261 (583)
..++| |+ ++||++++ |+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.|++.+++..|+- .
T Consensus 175 ~gi~t-G~--~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSlEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 175 TGLST-GL--PKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSLEMSAEQLGERLLASK 246 (421)
T ss_pred cceeC-CC--hhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHHHHH
Confidence 35677 88 99999986 99999999999999999999999999888743 2678999999999999999863 2
Q ss_pred cccccc-------------------------ccccCCc--ccHHHHHHHhc----cc-CCCEEEEccchhhhhhcccCCC
Q 007957 262 MMIATE-------------------------ELFLYSS--TDIEDIVEKVQ----PL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 262 l~i~~~-------------------------~i~i~~~--~~~e~i~~~i~----~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
.+++.. ++++.+. .++++|...+. +. ++++||||++|.+... ...
T Consensus 247 ~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~~~ 323 (421)
T TIGR03600 247 SGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---RGR 323 (421)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---CCC
Confidence 233211 2223222 34566555443 23 6899999999987532 122
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
....++.++++.|+.+|++++++||+++|++++ .+++|++.+++.||.|++|+++.++ ..-.
T Consensus 324 ~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~~~e 403 (421)
T TIGR03600 324 DRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAE 403 (421)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCCceE
Confidence 345678899999999999999999999999875 2678999999999999999986542 2346
Q ss_pred EEEEecccCCccccc
Q 007957 372 LRSVKNRFGSTDELG 386 (583)
Q Consensus 372 L~i~KnR~g~~~ei~ 386 (583)
+.+.|||+|+++.+.
T Consensus 404 l~v~K~R~G~~g~~~ 418 (421)
T TIGR03600 404 LILAKNRHGPTGTVE 418 (421)
T ss_pred EEEECCCCCCCceEE
Confidence 999999999988754
No 45
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.89 E-value=6.5e-23 Score=208.68 Aligned_cols=191 Identities=30% Similarity=0.429 Sum_probs=141.8
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh--cc
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR--MM 263 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r--l~ 263 (583)
++| |+ +.||+++ ||+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.|++.+++..|+-. .+
T Consensus 2 i~T-G~--~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~----~~~~vly~SlEm~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 2 IPT-GF--PALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAALN----GGYPVLYFSLEMSEEELAARLLARLSG 73 (259)
T ss_dssp B-S-ST--HHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT----TSSEEEEEESSS-HHHHHHHHHHHHHT
T ss_pred CCC-Ch--HHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhhc
Confidence 345 88 9999999 599999999999999999999999999999985 24799999999999999988722 12
Q ss_pred cccc-------------------------ccccC--CcccHHHHHHHhc----c-cCCCEEEEccchhhhhhcccCCCCC
Q 007957 264 IATE-------------------------ELFLY--SSTDIEDIVEKVQ----P-LSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 264 i~~~-------------------------~i~i~--~~~~~e~i~~~i~----~-~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
++.. .+++. ...++++|.+.+. . .+.++||||+++.+-... ...+.
T Consensus 74 v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~--~~~~~ 151 (259)
T PF03796_consen 74 VPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED--SSDNR 151 (259)
T ss_dssp STHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC--SSSCC
T ss_pred chhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC--CCCCH
Confidence 2111 12222 1234555554443 2 467899999999775432 33457
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCcc-----------CcCCccchheeccEEEEEeCceec-------eeeeEE
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSG-----------DIAGPRVLEHIVDAVLYMEGEKFS-------SYRLLR 373 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g-----------~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L~ 373 (583)
..++.+++..|+++|++++++||+++|++++. +++|++.+|+.||.|++|+++... ..-.+.
T Consensus 152 ~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~ 231 (259)
T PF03796_consen 152 RQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELI 231 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEE
Confidence 88899999999999999999999999999863 467889999999999999865432 234689
Q ss_pred EEecccCCccccc
Q 007957 374 SVKNRFGSTDELG 386 (583)
Q Consensus 374 i~KnR~g~~~ei~ 386 (583)
+.|||+|+++.+.
T Consensus 232 v~KnR~G~~g~v~ 244 (259)
T PF03796_consen 232 VAKNRNGPTGTVP 244 (259)
T ss_dssp EEEESSS--EEEE
T ss_pred EEecCCCCCceEE
Confidence 9999999988754
No 46
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.89 E-value=2.5e-22 Score=219.08 Aligned_cols=196 Identities=23% Similarity=0.378 Sum_probs=150.2
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..+++| |+ +.||+++ ||+++|++++|+|+||+|||+|+++++..++.. .+.+|+|||.|++.+++..|+...
T Consensus 175 ~~gi~t-G~--~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm~~~~i~~R~~~~ 246 (434)
T TIGR00665 175 ITGVPT-GF--TDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEMSAEQLAMRMLSS 246 (434)
T ss_pred CCcccC-Cc--hhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcCCHHHHHHHHHHH
Confidence 357887 88 9999988 699999999999999999999999999998763 257899999999999999887432
Q ss_pred --ccccc-------------------------ccccCC--cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCC
Q 007957 263 --MIATE-------------------------ELFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 263 --~i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+++.. ++++.+ ..++++|...+ .++++++||||+++.+..... ..
T Consensus 247 ~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--~~ 324 (434)
T TIGR00665 247 ESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--SE 324 (434)
T ss_pred hcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC--CC
Confidence 22110 122222 22455555433 445799999999998742211 12
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
....++.++++.|+.+|++++++||+++|+++. .+++|++.+++.||.|++|+++..+ ..-.
T Consensus 325 ~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~~~~~~~~ 404 (434)
T TIGR00665 325 NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDKGIAE 404 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCCCcCCCCceE
Confidence 345678899999999999999999999999874 2567889999999999999876531 2357
Q ss_pred EEEEecccCCcccccee
Q 007957 372 LRSVKNRFGSTDELGVF 388 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f 388 (583)
+.+.|||+|+++.+...
T Consensus 405 l~v~KnR~G~~g~~~l~ 421 (434)
T TIGR00665 405 IIIAKQRNGPTGTVKLA 421 (434)
T ss_pred EEEecCCCCCCCeEEEE
Confidence 89999999998875433
No 47
>PRK08760 replicative DNA helicase; Provisional
Probab=99.89 E-value=2.1e-22 Score=221.12 Aligned_cols=196 Identities=22% Similarity=0.328 Sum_probs=151.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
..++| |+ .+||+++ ||+.+|++++|+|+||+|||+|++++|..++.. .+.+|+|||.||+.+++..|+....
T Consensus 210 ~Gi~T-G~--~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 210 TGLPT-GY--NDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred CcccC-Cc--HHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCCHHHHHHHHHHhh
Confidence 45777 88 9999976 679999999999999999999999999988753 2568999999999999999974432
Q ss_pred --cccc-------------------------ccccCC--cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCC
Q 007957 264 --IATE-------------------------ELFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 264 --i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
++.. ++++.+ ..++++|...+ .+.++++||||++|.+..+. ...+
T Consensus 282 s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~--~~~~ 359 (476)
T PRK08760 282 GRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPG--NSEN 359 (476)
T ss_pred CCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCC--CCcc
Confidence 2111 122222 12355554443 34578999999999774222 1234
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec--------eeee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS--------SYRL 371 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~--------~~R~ 371 (583)
...++.++++.|+.+||+++++||+++|++++ .|+++++.+|+.||.|++|+++.++ ....
T Consensus 360 r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~e 439 (476)
T PRK08760 360 RATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAE 439 (476)
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcccccccCCCceE
Confidence 56788999999999999999999999999975 3678999999999999999876432 2346
Q ss_pred EEEEecccCCccccceee
Q 007957 372 LRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f~ 389 (583)
+.+.|||+|+++.+...+
T Consensus 440 liiaKnR~G~~g~~~l~f 457 (476)
T PRK08760 440 IIIGKHRGGPTGSCKLKF 457 (476)
T ss_pred EEEEccCCCCCceEEEEE
Confidence 889999999999865544
No 48
>PRK08006 replicative DNA helicase; Provisional
Probab=99.89 E-value=3.4e-22 Score=218.86 Aligned_cols=194 Identities=19% Similarity=0.309 Sum_probs=149.4
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--c
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM--M 263 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl--~ 263 (583)
++| |+ .+||+++ ||+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.||+.+++..|+-.. +
T Consensus 207 i~T-G~--~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM~~~ql~~Rlla~~~~ 278 (471)
T PRK08006 207 VNT-GY--DDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEMPGEQIMMRMLASLSR 278 (471)
T ss_pred ccC-CC--HHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHHhcC
Confidence 566 88 9999987 799999999999999999999999999998753 267899999999999999987321 1
Q ss_pred ccc--------------------------cccccCCc--ccHHHHHHHh----ccc-CCCEEEEccchhhhhhcccCCCC
Q 007957 264 IAT--------------------------EELFLYSS--TDIEDIVEKV----QPL-SPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 264 i~~--------------------------~~i~i~~~--~~~e~i~~~i----~~~-~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
++. .++++.+. .++.+|...+ .++ +.++||||++|.+..+. ...+
T Consensus 279 v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~--~~~~ 356 (471)
T PRK08006 279 VDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPS--LSDN 356 (471)
T ss_pred CCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCC--CCCC
Confidence 111 12233221 2344544443 233 58999999999764322 1234
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeeeE
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRLL 372 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L 372 (583)
...++.++++.|+.+|++++++||+++|++++ +|+++++.||+.||.|++|+++.++ ..-.+
T Consensus 357 r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~g~~el 436 (471)
T PRK08006 357 RTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEI 436 (471)
T ss_pred cHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccccccccCCCCceEE
Confidence 56789999999999999999999999999986 3688999999999999999986542 22468
Q ss_pred EEEecccCCccccceee
Q 007957 373 RSVKNRFGSTDELGVFE 389 (583)
Q Consensus 373 ~i~KnR~g~~~ei~~f~ 389 (583)
.+.|||+|+++.+...+
T Consensus 437 ivaKnR~G~~G~v~l~f 453 (471)
T PRK08006 437 IIGKQRNGPIGTVRLTF 453 (471)
T ss_pred EEecccCCCCceEEEEE
Confidence 89999999998865433
No 49
>PRK06321 replicative DNA helicase; Provisional
Probab=99.89 E-value=2.4e-22 Score=219.89 Aligned_cols=197 Identities=23% Similarity=0.361 Sum_probs=148.8
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-- 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl-- 262 (583)
-++| |+ .+||+++ ||+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.||+.+++..|+...
T Consensus 208 Gi~t-G~--~~LD~~t-~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~----~g~~v~~fSLEMs~~ql~~Rlla~~s 279 (472)
T PRK06321 208 GIPT-HF--IDLDKMI-NGFSPSNLMILAARPAMGKTALALNIAENFCFQ----NRLPVGIFSLEMTVDQLIHRIICSRS 279 (472)
T ss_pred cccc-Cc--HHHHHHh-cCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHhhc
Confidence 4566 77 9999988 599999999999999999999999999998753 257899999999999999997321
Q ss_pred ccccc-------------------------ccccCC--cccHHHHHHHhc----ccCCCEEEEccchhhhhhc-ccCCCC
Q 007957 263 MIATE-------------------------ELFLYS--STDIEDIVEKVQ----PLSPRALIIDSIQTVYLRG-VAGSAG 310 (583)
Q Consensus 263 ~i~~~-------------------------~i~i~~--~~~~e~i~~~i~----~~~p~lVVIDsi~~l~~~~-~~~~~g 310 (583)
+++.. ++++-+ ..++++|...++ +.+.++||||++|.+.... .....+
T Consensus 280 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~ 359 (472)
T PRK06321 280 EVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSES 359 (472)
T ss_pred CCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcch
Confidence 22211 112211 123455544433 3568999999999764221 111123
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec------eeeeEE
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS------SYRLLR 373 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~------~~R~L~ 373 (583)
...++.++++.|+.+||+++++||+++|+++. .|+++++.+|+.||.|++|+++.++ ..-.+.
T Consensus 360 r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~eli 439 (472)
T PRK06321 360 RQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELI 439 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCCCCceEEE
Confidence 35678899999999999999999999999875 3578999999999999999886542 235799
Q ss_pred EEecccCCccccceee
Q 007957 374 SVKNRFGSTDELGVFE 389 (583)
Q Consensus 374 i~KnR~g~~~ei~~f~ 389 (583)
+.|||+|+++.+...+
T Consensus 440 vaKnR~G~~G~v~l~f 455 (472)
T PRK06321 440 VAKNRHGSIGSVPLVF 455 (472)
T ss_pred EEecCCCCCceEEEEE
Confidence 9999999998764433
No 50
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.88 E-value=5.6e-22 Score=201.50 Aligned_cols=210 Identities=27% Similarity=0.405 Sum_probs=156.0
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCcc--CHHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEE--SVEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ee--s~~qi~~R~~ 260 (583)
.+|+| |+ +.||++|+||++.|.++.|+|+||+|||.|++|++........ .+.+.+|+||++|. +.+.+..-++
T Consensus 18 ~~i~T-g~--~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 18 SRIST-GC--KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp -EE---SS--HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred CeeCC-CC--HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 46777 88 9999999999999999999999999999999999988754221 23467899999997 5666666666
Q ss_pred hccccc----cccccCCcccHHHHH-------HHhcccCCCEEEEccchhhhhhcccCCCC---CHHHHHHHHHHHHHHH
Q 007957 261 RMMIAT----EELFLYSSTDIEDIV-------EKVQPLSPRALIIDSIQTVYLRGVAGSAG---GLMQVKECTSALLRFA 326 (583)
Q Consensus 261 rl~i~~----~~i~i~~~~~~e~i~-------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g---~~~qvrei~~~L~~lA 326 (583)
+++++. +++.+....+.+++. ..+.+.+.++|||||+.++|..++.+... ....+..++..|+.+|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA 174 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLA 174 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHH
Confidence 666553 344443333333322 33344578999999999999876654321 2456777888999999
Q ss_pred HcCCCcEEEecccCCccC-----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCe
Q 007957 327 KKTNIPVLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395 (583)
Q Consensus 327 k~~g~tVIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL 395 (583)
++++++|++++|++..-+ +++...+.|.+++.+.|++.+ ...|.+.+.|++.-|..+ ..|.|++.|+
T Consensus 175 ~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~-~~~R~~~i~ksp~~p~~~-~~f~It~~Gi 252 (256)
T PF08423_consen 175 RKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGR-GSERVATIVKSPSLPEGS-ASFQITEDGI 252 (256)
T ss_dssp HHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECS-TTEEEEEEEECSSSSSEE-EEEEEETTEE
T ss_pred HhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCC-CCeEEEEEeECCCCCCce-EEEEEeCCCc
Confidence 999999999999985421 256678999999999998754 257999999999877654 6799999999
Q ss_pred EEe
Q 007957 396 QAV 398 (583)
Q Consensus 396 ~~v 398 (583)
.++
T Consensus 253 ~d~ 255 (256)
T PF08423_consen 253 RDV 255 (256)
T ss_dssp EE-
T ss_pred cCC
Confidence 865
No 51
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.88 E-value=1.4e-21 Score=217.45 Aligned_cols=204 Identities=21% Similarity=0.325 Sum_probs=162.7
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..|++| |+ ++||++|+||+++|++++|.|+||+|||+|+.+++...+.. +.+++|+++|++++++..++..+
T Consensus 252 ~~~~~t-Gi--~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~-----g~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 252 NERISS-GV--PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR-----GERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred cccccC-Cc--HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEecCCHHHHHHHHHHc
Confidence 468887 88 99999999999999999999999999999999999888764 78999999999999999999999
Q ss_pred ccccccc------ccCC----c----ccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 263 MIATEEL------FLYS----S----TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 263 ~i~~~~i------~i~~----~----~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
+++.+.+ .+.. . ..+..+.+.+.+.+++++||||++.++.. .+..++++.+..|.+++++
T Consensus 324 g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~------~~~~~~~~~l~~l~~~~k~ 397 (509)
T PRK09302 324 GIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARG------GSLNEFRQFVIRLTDYLKS 397 (509)
T ss_pred CCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHh------CCHHHHHHHHHHHHHHHHh
Confidence 9875432 1111 1 12445666677789999999999987632 2455678889999999999
Q ss_pred CCCcEEEecccCCc-c-CcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccCCeEEecCC
Q 007957 329 TNIPVLLAGHVTKS-G-DIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQLGLQAVSNP 401 (583)
Q Consensus 329 ~g~tVIlisH~~k~-g-~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~GL~~v~~p 401 (583)
+|+|+|++.|.... + .......++++||.||.|+.... ...|.+++.|.|..++. .+..|.|++.|+.. .+|
T Consensus 398 ~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~It~~Gi~v-~~~ 474 (509)
T PRK09302 398 EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIHI-KDP 474 (509)
T ss_pred CCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEcCCCCCCCceEEEEEeCCcEEE-ccc
Confidence 99999999886542 1 22223458999999999986432 34688999999976654 58899999999974 455
No 52
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.88 E-value=1.7e-21 Score=202.56 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=163.5
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..+++| |+ +.||.+|+ ||+++|.++.|+|+||+|||||+++++...+.. +++++|++.|++.+. .++.+
T Consensus 33 ~~~isT-Gi--~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-----g~~~vyId~E~~~~~--~~a~~ 102 (325)
T cd00983 33 VEVIPT-GS--LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-----GGTVAFIDAEHALDP--VYAKK 102 (325)
T ss_pred CceecC-CC--HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCCEEEECccccHHH--HHHHH
Confidence 458888 88 99999999 999999999999999999999999999998874 679999999998885 57889
Q ss_pred ccccccccccCCcccHHHHHHH----hcccCCCEEEEccchhhhh-hcccCCCCCH---HH---HHHHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVEK----VQPLSPRALIIDSIQTVYL-RGVAGSAGGL---MQ---VKECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~~----i~~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~q---vrei~~~L~~lAk~~g 330 (583)
++++.+++.+..+.+.+++++. +....+++|||||+++++. .+..+..++. .+ +...++.|..++++++
T Consensus 103 lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~ 182 (325)
T cd00983 103 LGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSN 182 (325)
T ss_pred cCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999888888776665554444 3556899999999999874 3444433321 22 3466778888999999
Q ss_pred CcEEEecccCCcc--------CcCCccchheeccEEEEEeCcee--------ceeeeEEEEecccCCccccceeecc-cC
Q 007957 331 IPVLLAGHVTKSG--------DIAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFGSTDELGVFEMS-QL 393 (583)
Q Consensus 331 ~tVIlisH~~k~g--------~~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g~~~ei~~f~It-~~ 393 (583)
+++|+++|+...- ...|...|+|++..++.+++... .....+.++|||..++.....|.+. +.
T Consensus 183 ~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~p~~~~~~~i~~~~ 262 (325)
T cd00983 183 TTVIFINQLREKIGVMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGE 262 (325)
T ss_pred CEEEEEEccccccccccCCCccCCCchHHhhhcceEEEEEeecccccCCcccccEEEEEEEecccCCCCCceEEEEEcCc
Confidence 9999999976531 12466789999999999976432 2345799999999999887888876 56
Q ss_pred CeEEec
Q 007957 394 GLQAVS 399 (583)
Q Consensus 394 GL~~v~ 399 (583)
|+....
T Consensus 263 Gi~~~~ 268 (325)
T cd00983 263 GISREG 268 (325)
T ss_pred ccchhh
Confidence 776544
No 53
>PRK05595 replicative DNA helicase; Provisional
Probab=99.88 E-value=8.1e-22 Score=215.52 Aligned_cols=194 Identities=21% Similarity=0.308 Sum_probs=149.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--h
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--R 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--r 261 (583)
..++| |+ ++||+++ ||+.+|++++|+|+||+|||+|+++++..++.. ++.+|+|||.||+.+++..|+. .
T Consensus 182 ~gi~t-g~--~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlEms~~~l~~R~~a~~ 253 (444)
T PRK05595 182 TGVAS-GF--RELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLEMSKEQLAYKLLCSE 253 (444)
T ss_pred CcccC-Ch--HHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecCCCHHHHHHHHHHHh
Confidence 35777 88 9999987 799999999999999999999999999887643 2678999999999999999952 2
Q ss_pred cccccc-------------------------ccccCC--cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCC
Q 007957 262 MMIATE-------------------------ELFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 262 l~i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
.+++.. ++++.+ ..+++++...+ .+.++++||||++|.+.... ....
T Consensus 254 ~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~--~~~~ 331 (444)
T PRK05595 254 ANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGK--GSES 331 (444)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCC--CCcc
Confidence 233221 122222 12345554433 34579999999999764211 1223
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeeeE
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRLL 372 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L 372 (583)
...++.++++.|+.+|++++++||+++|++++ +|+++++.+|+.||.|++|+++.++ ..-.+
T Consensus 332 r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~~~~~~~e~ 411 (444)
T PRK05595 332 RQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKETEDKNVAEC 411 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccccccccCCCCceEE
Confidence 45678999999999999999999999999975 2678999999999999999986542 23578
Q ss_pred EEEecccCCccccce
Q 007957 373 RSVKNRFGSTDELGV 387 (583)
Q Consensus 373 ~i~KnR~g~~~ei~~ 387 (583)
.+.|||+|+++.+..
T Consensus 412 iv~K~R~G~~g~~~~ 426 (444)
T PRK05595 412 IIAKQRNGPTGTVKL 426 (444)
T ss_pred EEEccCCCCCceEEE
Confidence 999999999987544
No 54
>PRK06904 replicative DNA helicase; Validated
Probab=99.87 E-value=1e-21 Score=215.41 Aligned_cols=194 Identities=18% Similarity=0.316 Sum_probs=148.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
.-++| |+ .+||+++ ||+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.||+.+++..|+-..
T Consensus 202 ~Gi~T-G~--~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~----~g~~Vl~fSlEMs~~ql~~Rlla~~ 273 (472)
T PRK06904 202 TGVTT-GF--TDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA----SEKPVLVFSLEMPAEQIMMRMLASL 273 (472)
T ss_pred CCccC-Ch--HHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEeccCCHHHHHHHHHHhh
Confidence 35666 87 9999987 799999999999999999999999999998754 267899999999999999986321
Q ss_pred ----------c--ccc----------------cccccCCc--ccHHHHHHHhc----cc-CCCEEEEccchhhhhhcccC
Q 007957 263 ----------M--IAT----------------EELFLYSS--TDIEDIVEKVQ----PL-SPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 263 ----------~--i~~----------------~~i~i~~~--~~~e~i~~~i~----~~-~p~lVVIDsi~~l~~~~~~~ 307 (583)
+ ++. .++++.+. .++.+|...+. +. +.++||||++|.+.....
T Consensus 274 s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~-- 351 (472)
T PRK06904 274 SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF-- 351 (472)
T ss_pred CCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC--
Confidence 1 110 11333221 23455544432 22 588999999997743221
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec--------e
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS--------S 368 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~--------~ 368 (583)
..+...++.++++.|+.+||+++++||+++|+++. .|+++++.+|+.||.|++|+++.++ .
T Consensus 352 ~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~ 431 (472)
T PRK06904 352 EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKG 431 (472)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccccCCC
Confidence 12356688999999999999999999999999974 3688999999999999999987542 1
Q ss_pred eeeEEEEecccCCccccce
Q 007957 369 YRLLRSVKNRFGSTDELGV 387 (583)
Q Consensus 369 ~R~L~i~KnR~g~~~ei~~ 387 (583)
.-.+.+.|||+|+++.+..
T Consensus 432 ~~elivaKnR~G~~G~v~l 450 (472)
T PRK06904 432 VAEIIIGKQRNGPIGRVRL 450 (472)
T ss_pred ceEEEEeccCCCCCceEEE
Confidence 2468899999999987644
No 55
>PRK09354 recA recombinase A; Provisional
Probab=99.87 E-value=1.8e-21 Score=203.89 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=164.7
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..+++| |+ +.||.+|+ ||+++|.++.|+|++|+|||||+++++...+.. +++++||+.|++.++ .++++
T Consensus 38 ~~~isT-Gi--~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-----G~~~~yId~E~s~~~--~~a~~ 107 (349)
T PRK09354 38 VEVIST-GS--LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-----GGTAAFIDAEHALDP--VYAKK 107 (349)
T ss_pred CceecC-Cc--HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEECCccchHH--HHHHH
Confidence 458888 88 99999999 999999999999999999999999999988864 789999999999986 57889
Q ss_pred ccccccccccCCcccHHHHHH----HhcccCCCEEEEccchhhhh-hcccCCCCCH---HHHH---HHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVE----KVQPLSPRALIIDSIQTVYL-RGVAGSAGGL---MQVK---ECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~----~i~~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~qvr---ei~~~L~~lAk~~g 330 (583)
+|++.+++.+......++.++ .++...+++|||||+++++. .++.+..++. .+.+ ..++.|..++++++
T Consensus 108 lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~ 187 (349)
T PRK09354 108 LGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSN 187 (349)
T ss_pred cCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 999988888776655555443 34556899999999999874 4454443332 2333 45677888999999
Q ss_pred CcEEEecccCCc-----cC---cCCccchheeccEEEEEeCcee--------ceeeeEEEEecccCCccccceeecc-cC
Q 007957 331 IPVLLAGHVTKS-----GD---IAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFGSTDELGVFEMS-QL 393 (583)
Q Consensus 331 ~tVIlisH~~k~-----g~---~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g~~~ei~~f~It-~~ 393 (583)
+++|++.|+... ++ ..|...+.|++...+.|.+... ......+++|||..++.....|.+. +.
T Consensus 188 itvI~tNQvr~~ig~~~g~pe~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~~r~~vvKnk~~~p~~~a~~~i~~~~ 267 (349)
T PRK09354 188 TTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGE 267 (349)
T ss_pred cEEEEEEeeeeccccccCCCCcCCCchhhHhhheeeeEEecccccccCCceecceEEEEEEecccCCCCCceEEEEEcCC
Confidence 999999998753 12 3466789999999999986431 2345799999999998888888887 78
Q ss_pred CeEEecC
Q 007957 394 GLQAVSN 400 (583)
Q Consensus 394 GL~~v~~ 400 (583)
|+....+
T Consensus 268 Gi~~~~~ 274 (349)
T PRK09354 268 GISREGE 274 (349)
T ss_pred ccchhhh
Confidence 8775553
No 56
>PRK05748 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.3e-21 Score=214.35 Aligned_cols=197 Identities=21% Similarity=0.330 Sum_probs=149.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH-hc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD-RM 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~-rl 262 (583)
.+++| |+ ++||+++ ||+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.||+.+++..|+. ..
T Consensus 184 ~gi~T-G~--~~LD~~~-~G~~~G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 184 TGIPT-GF--TDLDKMT-SGLQPNDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCccC-Ch--HHHHHhc-CCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 57887 88 9999987 599999999999999999999999999998753 2678999999999999999973 21
Q ss_pred -ccccc-------------------------ccccCC--cccHHHHHHHh----ccc-CCCEEEEccchhhhhhcccCCC
Q 007957 263 -MIATE-------------------------ELFLYS--STDIEDIVEKV----QPL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 263 -~i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+++.. ++++.+ ..+++++...+ .++ ++++||||++|.+-... ....
T Consensus 256 ~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~-~~~~ 334 (448)
T PRK05748 256 GNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSG-RSGE 334 (448)
T ss_pred cCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCC-CCCc
Confidence 11111 122211 12344544433 344 68999999999774221 1112
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
+...++.++++.|+.+|++++++||+++|+++. .++++++.+|+.||.|++|+++.++ ..-.
T Consensus 335 ~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~~~e 414 (448)
T PRK05748 335 NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIE 414 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCCceE
Confidence 345678899999999999999999999999984 2577889999999999999876542 2346
Q ss_pred EEEEecccCCccccceee
Q 007957 372 LRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f~ 389 (583)
+.+.|||+|+++.+...+
T Consensus 415 ~~v~K~R~G~~g~~~~~~ 432 (448)
T PRK05748 415 IIIAKQRNGPVGTVELAF 432 (448)
T ss_pred EEEeccCCCCCceEEEEE
Confidence 888999999998865443
No 57
>PRK07004 replicative DNA helicase; Provisional
Probab=99.87 E-value=7e-22 Score=216.27 Aligned_cols=196 Identities=18% Similarity=0.294 Sum_probs=149.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
..++| |+ .+||+++ ||+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.||+.+++..|+-..
T Consensus 194 ~gi~T-G~--~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM~~~ql~~R~la~~ 265 (460)
T PRK07004 194 TGTPT-GF--VDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEMPGTQLAMRMLGSV 265 (460)
T ss_pred CCccC-Cc--HHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHhh
Confidence 46777 88 9999987 599999999999999999999999999988754 267899999999999999987321
Q ss_pred -ccccc-------------------------ccccCC--cccHHHHHHHhc----cc-CCCEEEEccchhhhhhcccCCC
Q 007957 263 -MIATE-------------------------ELFLYS--STDIEDIVEKVQ----PL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 263 -~i~~~-------------------------~i~i~~--~~~~e~i~~~i~----~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+++.. ++++.+ ..++.++...+. +. ++++||||++|.+.... ...
T Consensus 266 ~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~~~ 343 (460)
T PRK07004 266 GRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--QGE 343 (460)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--CCC
Confidence 11111 122221 123444444332 23 47999999999874221 123
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
+...++.++++.|+.+|++++++||+++|+++. +|+++++.+|+.||.|++|+++.++ ..-.
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~g~~e 423 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAE 423 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCCCceE
Confidence 356678999999999999999999999999875 3678999999999999999986542 2346
Q ss_pred EEEEecccCCccccceee
Q 007957 372 LRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f~ 389 (583)
+.+.|||+|+++.+...+
T Consensus 424 ~ivaKnR~G~~G~v~l~f 441 (460)
T PRK07004 424 IIIGKQRNGPIGPVRLTF 441 (460)
T ss_pred EEEEccCCCCCceEEEEE
Confidence 889999999999865443
No 58
>PRK08506 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.1e-21 Score=215.46 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=149.9
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh--c
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR--M 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r--l 262 (583)
.++| |+ +.||+++ ||+.+|++++|+|+||+|||+|+++++..++.. +.+|+|||.||+.+++..|+-. .
T Consensus 174 Gi~T-G~--~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~-----g~~V~~fSlEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 174 GLDT-GF--VELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ-----DKGVAFFSLEMPAEQLMLRMLSAKT 244 (472)
T ss_pred cccC-Ch--HHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc-----CCcEEEEeCcCCHHHHHHHHHHHhc
Confidence 4666 88 9999986 899999999999999999999999999998753 6789999999999999998733 2
Q ss_pred cccc-------------------------cccccCCc--ccHHHHHHHhcc----c-CCCEEEEccchhhhhhcccCCCC
Q 007957 263 MIAT-------------------------EELFLYSS--TDIEDIVEKVQP----L-SPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 263 ~i~~-------------------------~~i~i~~~--~~~e~i~~~i~~----~-~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
+++. .++++.+. .++++|...++. . +.++||||++|.+.... ...+
T Consensus 245 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~--~~~~ 322 (472)
T PRK08506 245 SIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG--NFKD 322 (472)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC--CCCC
Confidence 2221 12333322 346666554432 2 47899999999764221 1134
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceece-----------
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFSS----------- 368 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~~----------- 368 (583)
...++.++++.|+.+|++++++||+++|+++. .|+++++.||+.||.|++|+++.++.
T Consensus 323 r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~~ 402 (472)
T PRK08506 323 RHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEKKA 402 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEeccccccccccccccccc
Confidence 56788999999999999999999999999875 36789999999999999999864321
Q ss_pred ------------------eeeEEEEecccCCccccceee
Q 007957 369 ------------------YRLLRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 369 ------------------~R~L~i~KnR~g~~~ei~~f~ 389 (583)
.-.+.+.|||+|+++.+..++
T Consensus 403 ~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~l~f 441 (472)
T PRK08506 403 KKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVKLRF 441 (472)
T ss_pred ccccccccccccccccccceEEEEecCCCCCCceEEEEE
Confidence 134789999999998765544
No 59
>PRK06749 replicative DNA helicase; Provisional
Probab=99.87 E-value=1e-21 Score=212.93 Aligned_cols=195 Identities=20% Similarity=0.295 Sum_probs=147.4
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-- 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl-- 262 (583)
-++| |+ .+||+++ ||+.+|++++|+|+||+|||+|+++++..++.. +.+|+|||.||+.+++..|+-..
T Consensus 168 Gi~T-G~--~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~-----g~~v~~fSlEMs~~ql~~R~ls~~~ 238 (428)
T PRK06749 168 GIET-GY--TSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS-----GAAVGLFSLEMSSKQLLKRMASCVG 238 (428)
T ss_pred CccC-Cc--HHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc-----CCCEEEEEeeCCHHHHHHHHHHhcc
Confidence 4666 87 9999976 689999999999999999999999999999863 67899999999999999987322
Q ss_pred ccccc---------------------------ccccCCc--ccHHHHHHHhc----ccC--CCEEEEccchhhhhhcccC
Q 007957 263 MIATE---------------------------ELFLYSS--TDIEDIVEKVQ----PLS--PRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 263 ~i~~~---------------------------~i~i~~~--~~~e~i~~~i~----~~~--p~lVVIDsi~~l~~~~~~~ 307 (583)
+++.. ++++.+. .++.+|...++ +++ +.+||||++|.+.... ..
T Consensus 239 ~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~-~~ 317 (428)
T PRK06749 239 EVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDP-KH 317 (428)
T ss_pred CCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCC-CC
Confidence 12111 1222221 22445554433 223 5599999999764211 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------ee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SY 369 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~ 369 (583)
..+...++.++++.|+.+|++++++||+++|++++ +|+++++.+|+.||.|++|+++.++ ..
T Consensus 318 ~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~~~~~ 397 (428)
T PRK06749 318 KGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKEM 397 (428)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccccccCCCc
Confidence 12345678899999999999999999999999975 3678999999999999999986542 23
Q ss_pred eeEEEEecccCCccccceee
Q 007957 370 RLLRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 370 R~L~i~KnR~g~~~ei~~f~ 389 (583)
-.+.+.|||+|+++.+...+
T Consensus 398 ~eliiaKnR~G~~G~v~~~f 417 (428)
T PRK06749 398 TEIHVAKHRNGPVGSFKLRF 417 (428)
T ss_pred eEEEEecCCCCCCceEEEEE
Confidence 46889999999998764433
No 60
>PRK08840 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.3e-21 Score=213.94 Aligned_cols=207 Identities=17% Similarity=0.293 Sum_probs=153.2
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-- 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl-- 262 (583)
-++| |+ .+||+++ ||+.+|++++|+|+||+|||+|++++|..++.. ++.+|+|||.||+.+++..|+-..
T Consensus 199 gi~T-G~--~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~~----~~~~v~~fSlEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 199 GVDT-GF--TDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD----QDKPVLIFSLEMPAEQLMMRMLASLS 270 (464)
T ss_pred CcCC-Cc--HHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh----CCCeEEEEeccCCHHHHHHHHHHhhC
Confidence 4566 87 9999987 789999999999999999999999999998754 267899999999999999987321
Q ss_pred cccc--------------------------cccccCCc--ccHHHHHHHhc----cc-CCCEEEEccchhhhhhcccCCC
Q 007957 263 MIAT--------------------------EELFLYSS--TDIEDIVEKVQ----PL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 263 ~i~~--------------------------~~i~i~~~--~~~e~i~~~i~----~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+++. .++++.+. .++.+|...+. ++ +.++||||++|.+..+.. ..
T Consensus 271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~--~~ 348 (464)
T PRK08840 271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL--SD 348 (464)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC--CC
Confidence 1111 12333221 23455544332 23 479999999997642221 12
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
....++.++++.|+.+|++++++||+++|++++ .|+++++.+|+.||.|++|+++.++ ..-.
T Consensus 349 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e 428 (464)
T PRK08840 349 NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLKGTAE 428 (464)
T ss_pred chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccccCCCcCCCCceE
Confidence 346679999999999999999999999999975 3678999999999999999987542 2346
Q ss_pred EEEEecccCCccccceeec-ccCCeEEecCC
Q 007957 372 LRSVKNRFGSTDELGVFEM-SQLGLQAVSNP 401 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f~I-t~~GL~~v~~p 401 (583)
+.+.|||+|+++.+...+. ....+..+.+|
T Consensus 429 livaKnR~G~~G~v~l~f~~~~~~f~~~~~~ 459 (464)
T PRK08840 429 IIIGKQRNGPIGSVRLTFQGQYSRFDNYAGP 459 (464)
T ss_pred EEEecccCCCCceEEEEEecCcccccCCCCC
Confidence 8899999999988644332 22334444444
No 61
>PRK05636 replicative DNA helicase; Provisional
Probab=99.87 E-value=1.1e-21 Score=216.12 Aligned_cols=196 Identities=22% Similarity=0.285 Sum_probs=150.3
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
..++| |+ .+||+++ ||+.+|++++|+|+||+|||+|+++++..++.. .+.+|+|||.||+.+++..|+-..
T Consensus 246 ~Gi~T-G~--~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 246 TGIPT-GF--KDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSLEMSKSEIVMRLLSAE 317 (505)
T ss_pred Cceec-Ch--HHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEeeCCHHHHHHHHHHHh
Confidence 45777 88 9999975 799999999999999999999999999988753 257899999999999999886221
Q ss_pred -cccc-------------------------cccccCCc--ccHHHHHHHhc----ccCCCEEEEccchhhhhhcccCCCC
Q 007957 263 -MIAT-------------------------EELFLYSS--TDIEDIVEKVQ----PLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 263 -~i~~-------------------------~~i~i~~~--~~~e~i~~~i~----~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
+++. .++++.+. .++++|...++ ++++++||||++|.+-.. ....+
T Consensus 318 s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~--~~~~~ 395 (505)
T PRK05636 318 AEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSG--KRVES 395 (505)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCC--CCCCc
Confidence 1111 12333222 23555555443 457899999999976311 11233
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc-----------CcCCccchheeccEEEEEeCceec-------eeeeE
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG-----------DIAGPRVLEHIVDAVLYMEGEKFS-------SYRLL 372 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g-----------~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L 372 (583)
...++.++++.|+.+||+++++||+++|++++. |+++++.||+.||.|++|+++.++ ..-.+
T Consensus 396 r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g~~el 475 (505)
T PRK05636 396 RQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGEADI 475 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCCceEE
Confidence 456789999999999999999999999999752 578999999999999999976542 23468
Q ss_pred EEEecccCCccccceee
Q 007957 373 RSVKNRFGSTDELGVFE 389 (583)
Q Consensus 373 ~i~KnR~g~~~ei~~f~ 389 (583)
.+.|||+|+++.+...+
T Consensus 476 ivaK~RnG~~Gtv~l~f 492 (505)
T PRK05636 476 ILAKHRGGPIDTVQVAH 492 (505)
T ss_pred EEecCCCCCCceEEEEe
Confidence 89999999998865443
No 62
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=99.87 E-value=3.2e-21 Score=212.27 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=140.8
Q ss_pred ccccceEEEEEEcCCceeE-EEEEEEeecCCCceEEEechh----HHHHHH----HHHHHHHhcCC--CcccccEEEEec
Q 007957 414 EFLAGLAVAVIMDGSRSFL-IEIQALCVSGSTVSRHVNGIQ----ASRADM----IISVLMKQAGL--KLQENAIFLNVV 482 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~~~l-VEvqalv~~~~~p~~~~~G~~----~~~~~~----~v~~~~k~~g~--~~~~~dI~vnl~ 482 (583)
...+|.+++++|....+.. .-||+.+.+ |.+++.++|+. ++|+.. .+++-.++++. .+..+|||||++
T Consensus 492 p~~pGvv~GLA~t~~Gg~~Ly~IE~~~~~-G~Gkl~lTG~~lg~vmKESa~~A~sy~ks~a~~l~~~~~~~~~DiHIHvp 570 (675)
T TIGR02653 492 PPKPGVVYAVTQNESGKVGLYRFEVQVSA-GSGKHSVSGLGSNTTAKESIRVAFDYFKGNLVRISASAKFSEHDYHLHVV 570 (675)
T ss_pred CCCCeEEEEEEEcCCCCeEEEEEEEEEeC-CCCceeeccCCchHHHHHHHHHHHHHHHHhHHhcCCCcccCcceEEEECC
Confidence 3568999999999766664 477877888 56889999942 566544 33333444443 488999999999
Q ss_pred CC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhh---hh
Q 007957 483 SG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL---AT 558 (583)
Q Consensus 483 ~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~---~~ 558 (583)
.+ .+++||++++|+++||+|+++++|+..+++|+|||+|.|.|.||+|+.+++.+|.++|+|+||+|.+|.+++ ++
T Consensus 571 ega~pkdGpSAGia~~~AL~Sal~~rpVr~~lAmTGEITL~G~VlpVGGlkEKl~aA~raGaK~VLiP~~N~~Dl~~vP~ 650 (675)
T TIGR02653 571 DLHNTGPSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVINPVQDLAGSLQLAMDSGAKRVLIPMSSARDIPTVPA 650 (675)
T ss_pred CCCCCCCCchhHHHHHHHHHHHHhCCCCCCCeEEEEEEecceEEEecCCHHHHHHHHHHCCCCEEEccHHHhhhHHhCCH
Confidence 98 889999999999999999999999999999999999999999999999999999999999999999998775 34
Q ss_pred cCCCCcEEEEeCCHHHHHHHhh
Q 007957 559 LGFEQMEFIGCKNLKEVINVVF 580 (583)
Q Consensus 559 ~~~~~i~v~~v~~l~e~~~~l~ 580 (583)
.+..+++++++++..||+..++
T Consensus 651 ev~~kl~i~fy~d~~dal~kAL 672 (675)
T TIGR02653 651 ELFSKFQISFYSDPVDAVYKAL 672 (675)
T ss_pred HHHhCCEEEEeCCHHHHHHHhh
Confidence 5567899999999999998765
No 63
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.87 E-value=1.8e-21 Score=202.34 Aligned_cols=208 Identities=19% Similarity=0.306 Sum_probs=163.5
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..|++| |+ +.||.+|+ ||+++|++++|+|+||+|||||+++++...+.. +++|+||+.|++.++. ++++
T Consensus 33 ~~~i~T-Gi--~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-----g~~v~yId~E~~~~~~--~a~~ 102 (321)
T TIGR02012 33 VETIST-GS--LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-----GGTAAFIDAEHALDPV--YARK 102 (321)
T ss_pred CceecC-CC--HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEEcccchhHHH--HHHH
Confidence 458888 88 99999999 999999999999999999999999999998874 7899999999988874 6788
Q ss_pred ccccccccccCCcccHHHHHHH----hcccCCCEEEEccchhhhh-hcccCCCCCH---HHH---HHHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVEK----VQPLSPRALIIDSIQTVYL-RGVAGSAGGL---MQV---KECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~~----i~~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~qv---rei~~~L~~lAk~~g 330 (583)
++++.+++.+......++.+.. ++...+++|||||+++++. .++++..++. .+. ...++.|..++++++
T Consensus 103 lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~ 182 (321)
T TIGR02012 103 LGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSN 182 (321)
T ss_pred cCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 9999888887776665554443 4456899999999999874 3444333221 233 356778889999999
Q ss_pred CcEEEecccCCc-----c---CcCCccchheeccEEEEEeCce--------eceeeeEEEEecccCCccccceeecc-cC
Q 007957 331 IPVLLAGHVTKS-----G---DIAGPRVLEHIVDAVLYMEGEK--------FSSYRLLRSVKNRFGSTDELGVFEMS-QL 393 (583)
Q Consensus 331 ~tVIlisH~~k~-----g---~~ag~~~Le~~aD~Vl~Le~~~--------~~~~R~L~i~KnR~g~~~ei~~f~It-~~ 393 (583)
+++|+++|+... + ...|...|.|++...+.+++.. ......++++|||..++.....|.+. +.
T Consensus 183 ~tvi~tNQvr~~~g~~~~~~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~~~p~~~~~~~i~~~~ 262 (321)
T TIGR02012 183 TTAIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKVAPPFKEAEFDILYGE 262 (321)
T ss_pred CEEEEEecceeccCcccCCCccCcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCCCCCCCceEEEEEcCC
Confidence 999999997653 1 1346677999999999886532 12446799999999999888888888 78
Q ss_pred CeEEecC
Q 007957 394 GLQAVSN 400 (583)
Q Consensus 394 GL~~v~~ 400 (583)
|+....+
T Consensus 263 Gi~~~~~ 269 (321)
T TIGR02012 263 GISKLGE 269 (321)
T ss_pred ccchhhH
Confidence 8775553
No 64
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.84 E-value=7.4e-20 Score=183.23 Aligned_cols=192 Identities=20% Similarity=0.275 Sum_probs=140.3
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccc----
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEEL---- 269 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i---- 269 (583)
++||..++||+++|++++|.|+||+|||||+++++..++.. +.+++|++.|++++++...+.+++++.+.+
T Consensus 11 ~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~ 85 (230)
T PRK08533 11 DELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-----GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISG 85 (230)
T ss_pred eeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcC
Confidence 89999999999999999999999999999999999887663 678999999999999999988888765422
Q ss_pred --ccC-------Cc----ccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 007957 270 --FLY-------SS----TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336 (583)
Q Consensus 270 --~i~-------~~----~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIli 336 (583)
.+. .. ..+.+++..+...+|+++||||++.++.. ..+....+++.+.|+.++++ |++++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~-----~~d~~~~~~l~~~l~~l~~~-g~tvi~t 159 (230)
T PRK08533 86 KLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN-----DASEVAVNDLMAFFKRISSL-NKVIILT 159 (230)
T ss_pred cEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC-----CcchHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 111 11 11334555555668999999999987522 12344456677777666654 7777777
Q ss_pred cccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-c-cceeeccc-CCeEE
Q 007957 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-E-LGVFEMSQ-LGLQA 397 (583)
Q Consensus 337 sH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-e-i~~f~It~-~GL~~ 397 (583)
+|.... .......++++||.|+.|+.... ...|.++++|.|..+.. + ...|.+.. .|+..
T Consensus 160 ~~~~~~-~~~~~~~~~~~~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~~~f~i~~~~g~~~ 224 (230)
T PRK08533 160 ANPKEL-DESVLTILRTAATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKSIPFRVEPKIGLAV 224 (230)
T ss_pred eccccc-ccccceeEEEeeeEEEEEEEeecCCEEEEEEEEEEecCCccccCCEEEEEEcCCccEEE
Confidence 665421 11223468999999999985433 23588999999974442 3 77899884 57764
No 65
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.8e-19 Score=192.62 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=148.9
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--c
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM--M 263 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl--~ 263 (583)
++| |. ..||+.++ |+.+|++++++|+||.|||+|++.+|.+++.. .+.+|++||.||+.+|+..|+-.. +
T Consensus 179 i~t-gf--~~LD~~t~-G~~~~dLii~AaRP~mGKTafalnia~n~a~~----~~~~v~iFSLEM~~eql~~R~Ls~~s~ 250 (435)
T COG0305 179 VPT-GF--TDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAAD----GRKPVAIFSLEMSEEQLVMRLLSSESG 250 (435)
T ss_pred ccc-Cc--hhhHHHhc-CCccCCEEEEccCCCCChHHHHHHHHHHHHHh----cCCCeEEEEccCCHHHHHHHhhccccc
Confidence 445 66 89999875 59999999999999999999999999999986 367899999999999999998322 1
Q ss_pred cccc-------------------------ccccCC--cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCCCH
Q 007957 264 IATE-------------------------ELFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAGGL 312 (583)
Q Consensus 264 i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g~~ 312 (583)
++.. ++++.+ ..++.++...+ .+++.++++||++|.+..... ..+..
T Consensus 251 v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~--~~~r~ 328 (435)
T COG0305 251 IESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKK--SENRK 328 (435)
T ss_pred cchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeeccccc--chhHH
Confidence 2211 122211 11233333222 334579999999998764321 24567
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeeeEEE
Q 007957 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRLLRS 374 (583)
Q Consensus 313 ~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L~i 374 (583)
.++.++.+.|+.+|++.+++|+.++|+++. +|+++++.||+.||.|+++++++++ ..-.+.+
T Consensus 329 qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y~~~~~~~g~aeiIi 408 (435)
T COG0305 329 QEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTPDRGEAEVIV 408 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhccCCCCCCceEEEEE
Confidence 889999999999999999999999999975 4789999999999999999987653 2347889
Q ss_pred EecccCCccccce
Q 007957 375 VKNRFGSTDELGV 387 (583)
Q Consensus 375 ~KnR~g~~~ei~~ 387 (583)
.|||.||++.+..
T Consensus 409 ~K~RnGp~GtV~l 421 (435)
T COG0305 409 AKNRNGPTGTVKL 421 (435)
T ss_pred EeccCCCCceEEE
Confidence 9999999998753
No 66
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.80 E-value=2.1e-18 Score=175.68 Aligned_cols=202 Identities=32% Similarity=0.403 Sum_probs=156.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
.|++| || +.||++++||+++|++++|.|+||+|||+|++|++...+.. +.+|+|++.+++++++...+.+++
T Consensus 3 ~~~~T-GI--~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-----ge~vlyvs~~e~~~~l~~~~~~~g 74 (260)
T COG0467 3 ERIPT-GI--PGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-----GEPVLYVSTEESPEELLENARSFG 74 (260)
T ss_pred ccccC-CC--cchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-----CCcEEEEEecCCHHHHHHHHHHcC
Confidence 57888 88 89999999999999999999999999999999999999985 789999999999999999999998
Q ss_pred ccccccc------cC-------C--------cccH----HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHH
Q 007957 264 IATEELF------LY-------S--------STDI----EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKEC 318 (583)
Q Consensus 264 i~~~~i~------i~-------~--------~~~~----e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei 318 (583)
++.+.+. +. . ..++ ..|.+.++..++..+|+|++..++.. ..+....+.+
T Consensus 75 ~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~-----~~~~~~~r~~ 149 (260)
T COG0467 75 WDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLY-----LNDPALVRRI 149 (260)
T ss_pred CCHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhh-----cCchHHHHHH
Confidence 8764221 10 1 1222 34555566778999999999965432 2244455889
Q ss_pred HHHHHHHHHcCCCcEEEecccCCccCcCCc-cchheeccEEEEEeCce--eceee-eEEEEecccCCcc-ccceeeccc-
Q 007957 319 TSALLRFAKKTNIPVLLAGHVTKSGDIAGP-RVLEHIVDAVLYMEGEK--FSSYR-LLRSVKNRFGSTD-ELGVFEMSQ- 392 (583)
Q Consensus 319 ~~~L~~lAk~~g~tVIlisH~~k~g~~ag~-~~Le~~aD~Vl~Le~~~--~~~~R-~L~i~KnR~g~~~-ei~~f~It~- 392 (583)
...+.++.++.+++.++++..... .... ...++++|.++.|+... ....| .+++.|.|.-++. ....|.+++
T Consensus 150 ~~~l~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~~~~~~~~~~i~~g 227 (260)
T COG0467 150 LLLLKRFLKKLGVTSLLTTEAPVE--ERGESGVEEYIVDGVIRLDLKEIEGGGDRRYLRILKMRGTPHSLKVIPFEITDG 227 (260)
T ss_pred HHHHHHHHHhCCCEEEEEeccccc--CCCccceEEEEEEEEEEEeeecccCceEEEEEEEEeccccccCCceeceEEecC
Confidence 999999999999999998765322 1222 35666999999997532 23345 8999999975554 688999998
Q ss_pred CCeEEecC
Q 007957 393 LGLQAVSN 400 (583)
Q Consensus 393 ~GL~~v~~ 400 (583)
.|+.....
T Consensus 228 ~gi~i~~~ 235 (260)
T COG0467 228 EGIVVYPE 235 (260)
T ss_pred CcEEEecC
Confidence 78887664
No 67
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.79 E-value=1.9e-18 Score=166.27 Aligned_cols=163 Identities=26% Similarity=0.321 Sum_probs=121.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccc------ccCC-------cc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEEL------FLYS-------ST 275 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i------~i~~-------~~ 275 (583)
+++|.|+||+|||+|+++++...+.. +.+|+|+++|++.+++..++.+++++.+.+ .+.+ ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-----g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-----GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPA 75 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchh
Confidence 37899999999999999999998864 789999999999999999999998875432 1111 10
Q ss_pred c-------HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cCcCC
Q 007957 276 D-------IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GDIAG 347 (583)
Q Consensus 276 ~-------~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~~ag 347 (583)
. ...+...+...+|+++|||+++.++.. +....+..+..+....++.|+++|+++|.... +...+
T Consensus 76 ~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 76 ESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 0 244555566779999999999987632 22233344444445455569999999998765 23456
Q ss_pred ccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc
Q 007957 348 PRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD 383 (583)
Q Consensus 348 ~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~ 383 (583)
+..++++||.|+.|+.... ...|.++++|+|..++.
T Consensus 149 ~~~~~~~aD~ii~l~~~~~~~~~~r~l~i~K~R~~~~~ 186 (187)
T cd01124 149 GGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKMRGGPHD 186 (187)
T ss_pred cCceeEeeeEEEEEEEEccCCEEEEEEEEEEccCCCCC
Confidence 6789999999999986543 34688999999976653
No 68
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.78 E-value=3.5e-18 Score=194.12 Aligned_cols=198 Identities=18% Similarity=0.292 Sum_probs=154.3
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..+++| |+ ++||.+|+ ||+++|++++|+|++|+|||||+++++...+.. +++|+|+++|++... .++++
T Consensus 38 v~~isT-Gi--~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~-----G~~v~yId~E~t~~~--~~A~~ 107 (790)
T PRK09519 38 ISVIPT-GS--IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-----GGVAAFIDAEHALDP--DYAKK 107 (790)
T ss_pred CceecC-Cc--HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEECCccchhH--HHHHH
Confidence 358887 88 99999999 999999999999999999999999998887764 789999999998884 48899
Q ss_pred ccccccccccCCcccHHHHHHH----hcccCCCEEEEccchhhhh-hcccCCCCCH---HH---HHHHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVEK----VQPLSPRALIIDSIQTVYL-RGVAGSAGGL---MQ---VKECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~~----i~~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~q---vrei~~~L~~lAk~~g 330 (583)
+|++.+++.+......++++.. +++.++++|||||+++++. .++.+..++. .+ +...+..|..+++++|
T Consensus 108 lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~n 187 (790)
T PRK09519 108 LGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSG 187 (790)
T ss_pred cCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999888877665554544433 4455899999999999983 5665554432 12 2356778889999999
Q ss_pred CcEEEecccCCc-c----C---cCCccchheeccEEEEEeCc--------eeceeeeEEEEecccCCccccceeecc
Q 007957 331 IPVLLAGHVTKS-G----D---IAGPRVLEHIVDAVLYMEGE--------KFSSYRLLRSVKNRFGSTDELGVFEMS 391 (583)
Q Consensus 331 ~tVIlisH~~k~-g----~---~ag~~~Le~~aD~Vl~Le~~--------~~~~~R~L~i~KnR~g~~~ei~~f~It 391 (583)
+++|++.|+... + + ..|...|.|.+...|.|.+. .....+.++++||+.-+.+ ...|.++
T Consensus 188 vtvi~TNQv~~~~g~~fg~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G~~~~~kv~ks~cLpe~-e~v~~i~ 263 (790)
T PRK09519 188 TTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVGNRTRVKVVKNKCLAEG-TRIFDPV 263 (790)
T ss_pred CEEEEEecceecCCCcCCCCCcCCCCcccceeccEEEEeeeccccccCccccceEEEEEEEECCCCCCc-eEEEEec
Confidence 999999998764 1 2 34678999999999999853 1245678999999865433 3456554
No 69
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.77 E-value=5e-18 Score=173.03 Aligned_cols=207 Identities=21% Similarity=0.245 Sum_probs=159.0
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
.+.|+| |. ..||.+||||++.|.++-|+|++|+||||+++|++...... +..++|++.|...+.- |+..+
T Consensus 39 ~~~i~T-Gs--~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-----g~~a~fIDtE~~l~p~--r~~~l 108 (279)
T COG0468 39 IEAIST-GS--LALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-----GGKAAFIDTEHALDPE--RAKQL 108 (279)
T ss_pred cccccc-cc--hhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC-----CCeEEEEeCCCCCCHH--HHHHH
Confidence 356777 77 89999999999999999999999999999999999998874 6699999999854422 22233
Q ss_pred ccc-ccccccCCcccHHHHHHHh----ccc--CCCEEEEccchhhhhhcccCCCCC---HHHHHHHHHHHHHHHHcCCCc
Q 007957 263 MIA-TEELFLYSSTDIEDIVEKV----QPL--SPRALIIDSIQTVYLRGVAGSAGG---LMQVKECTSALLRFAKKTNIP 332 (583)
Q Consensus 263 ~i~-~~~i~i~~~~~~e~i~~~i----~~~--~p~lVVIDsi~~l~~~~~~~~~g~---~~qvrei~~~L~~lAk~~g~t 332 (583)
+.+ .+++++....+.++-++.+ ... ++++|||||+.+++......+... ...+...++.|..+|++++++
T Consensus 109 ~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~ 188 (279)
T COG0468 109 GVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTA 188 (279)
T ss_pred HHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 333 6677777666655433322 222 499999999999987765443222 333455677788899999999
Q ss_pred EEEecccCCcc-----C---cCCccchheeccEEEEEeCce-----eceeeeEEEEecccCCccccceeecccCCeEEec
Q 007957 333 VLLAGHVTKSG-----D---IAGPRVLEHIVDAVLYMEGEK-----FSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399 (583)
Q Consensus 333 VIlisH~~k~g-----~---~ag~~~Le~~aD~Vl~Le~~~-----~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v~ 399 (583)
|++++|+...- + ..|...+.|++...+.+++.. ....|...++||+..|.+....|.|++.|.....
T Consensus 189 vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~ 268 (279)
T COG0468 189 VIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLKEDVGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDRE 268 (279)
T ss_pred EEEECceeeecCcccCCcccCCCchHHHhhhheEEEEeeccccccccCCeEEEEEEeCCCCCCCceeEEEeecCcccccc
Confidence 99999997542 2 246789999999999998763 3568999999999999988889999988765444
No 70
>PRK05973 replicative DNA helicase; Provisional
Probab=99.77 E-value=4.6e-18 Score=170.06 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=108.0
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccc----c
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEEL----F 270 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i----~ 270 (583)
-.|+ +.||+++|++++|+|+||+|||+|+++++...+.. +++|+|||+||+++++..|+..++++.+++ .
T Consensus 53 p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~ 126 (237)
T PRK05973 53 PAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-----GRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFE 126 (237)
T ss_pred CHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceE
Confidence 3677 56899999999999999999999999999988864 679999999999999999999999876543 1
Q ss_pred c--CCcccHHHHHHH-hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 271 L--YSSTDIEDIVEK-VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 271 i--~~~~~~e~i~~~-i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
+ .+....+.++.. +...++++||||+++.+... ....++++.+..|+.+|+++|+|||+++|+++.
T Consensus 127 ~d~~d~~~~~~ii~~l~~~~~~~lVVIDsLq~l~~~------~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 127 FDTSDAICADYIIARLASAPRGTLVVIDYLQLLDQR------REKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred eecCCCCCHHHHHHHHHHhhCCCEEEEEcHHHHhhc------ccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 1 122234443433 33567899999999986421 122346777888999999999999999999976
No 71
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.72 E-value=9.6e-18 Score=162.44 Aligned_cols=152 Identities=31% Similarity=0.471 Sum_probs=98.4
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-----CCCCccEEEEeCccCHHHHHHHH
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-----LGEPSPVVYVSGEESVEQIGNRA 259 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-----~~~~~~VLyis~Ees~~qi~~R~ 259 (583)
++.+ ++ +++|.++.|++++|++++|+|++|+|||||+++++..++.+.+ ...+.+|+|+++|++..++..|+
T Consensus 13 ~~~~-~~--~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 13 DLDT-GF--PPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp HHHS---------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred hccC-CC--CCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 3444 55 8999999999999999999999999999999999999986321 01357999999999999999998
Q ss_pred Hhccccc---ccc-----------ccC--------CcccHHHHHHHhcc-cCCCEEEEccchhhhhhcccCCCCCHHHHH
Q 007957 260 DRMMIAT---EEL-----------FLY--------SSTDIEDIVEKVQP-LSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316 (583)
Q Consensus 260 ~rl~i~~---~~i-----------~i~--------~~~~~e~i~~~i~~-~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr 316 (583)
..+.... .+. .++ ....++++.+.+.+ .++++||||+++.+... ..++..++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~----~~~~~~~~~ 165 (193)
T PF13481_consen 90 RALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG----DENSNSAVA 165 (193)
T ss_dssp HHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-----TT-HHHHH
T ss_pred HHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC----CCCCHHHHH
Confidence 6544221 111 111 12336778888888 78999999999998743 344566678
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCcc
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKSG 343 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~g 343 (583)
+++..|+++|+++|++|++++|.+|.+
T Consensus 166 ~~~~~l~~la~~~~~~vi~v~H~~K~~ 192 (193)
T PF13481_consen 166 QLMQELKRLAKEYGVAVILVHHTNKSG 192 (193)
T ss_dssp HHHHHHHHHHHHH--EEEEEEEE----
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 999999999999999999999999864
No 72
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=5.8e-16 Score=149.43 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=149.9
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccc
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~ 265 (583)
+++ |- +|||+-||||+|-|++++|-|++|+|||.|..+++.-+..+ +.++.|++.|.+.......++.++++
T Consensus 10 i~~-gn--delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~-----g~~v~yvsTe~T~refi~qm~sl~yd 81 (235)
T COG2874 10 IKS-GN--DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMN-----GYRVTYVSTELTVREFIKQMESLSYD 81 (235)
T ss_pred ccC-Cc--HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhC-----CceEEEEEechhHHHHHHHHHhcCCC
Confidence 444 55 99999999999999999999999999999999999999885 78999999999999999999999887
Q ss_pred cccccc------CC----c---------ccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 007957 266 TEELFL------YS----S---------TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA 326 (583)
Q Consensus 266 ~~~i~i------~~----~---------~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA 326 (583)
..+.++ ++ . .-++.+++.++..+.+++||||++.+... .+..++.+++..+++++
T Consensus 82 v~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~------~~~~~vl~fm~~~r~l~ 155 (235)
T COG2874 82 VSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY------DSEDAVLNFMTFLRKLS 155 (235)
T ss_pred chHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc------ccHHHHHHHHHHHHHHH
Confidence 654331 11 0 11455666677778999999999887532 25778999999999998
Q ss_pred HcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCC--ccccceeecc-cCCeEEe
Q 007957 327 KKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGS--TDELGVFEMS-QLGLQAV 398 (583)
Q Consensus 327 k~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~--~~ei~~f~It-~~GL~~v 398 (583)
.+ |.+||++.|...-.+ .--..+...||..+.|+.... ...+.+.++|-|.+. .++...|.+. .-|+..+
T Consensus 156 d~-gKvIilTvhp~~l~e-~~~~rirs~~d~~l~L~~~~~Gg~~~~~~~i~K~~ga~~s~~~~I~F~V~P~~Glkve 230 (235)
T COG2874 156 DL-GKVIILTVHPSALDE-DVLTRIRSACDVYLRLRLEELGGDLIKVLEIVKYRGARKSFQNIISFRVEPGFGLKVE 230 (235)
T ss_pred hC-CCEEEEEeChhhcCH-HHHHHHHHhhheeEEEEhhhhCCeeeEEEEEeeecCchhhcCCceeEEecCCCceEEE
Confidence 64 889999988653211 011347889999999986443 234678888888643 3466778776 3565543
No 73
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.69 E-value=4.2e-16 Score=161.89 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=142.8
Q ss_pred cccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 184 WRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..++| |. ..||..|+ ||+|.|.++.|+|++++|||||+++++..+.+. +..++||+.|...+. .++.++
T Consensus 32 ~~i~T-G~--~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-----g~~~a~ID~e~~ld~--~~a~~l 101 (322)
T PF00154_consen 32 EVIST-GS--PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-----GGICAFIDAEHALDP--EYAESL 101 (322)
T ss_dssp -EE---S---HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-----T-EEEEEESSS---H--HHHHHT
T ss_pred ceEec-CC--cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-----cceeEEecCcccchh--hHHHhc
Confidence 45676 87 99999999 999999999999999999999999999888764 678999999988753 566788
Q ss_pred cccccccccCCcccHHHHHHH----hcccCCCEEEEccchhhhhh-cccCCCCC------HHHHHHHHHHHHHHHHcCCC
Q 007957 263 MIATEELFLYSSTDIEDIVEK----VQPLSPRALIIDSIQTVYLR-GVAGSAGG------LMQVKECTSALLRFAKKTNI 331 (583)
Q Consensus 263 ~i~~~~i~i~~~~~~e~i~~~----i~~~~p~lVVIDsi~~l~~~-~~~~~~g~------~~qvrei~~~L~~lAk~~g~ 331 (583)
|++.+++.+..+...++.++. ++.-..++|||||+..+... +++++.++ ...+...++.|...+.+.++
T Consensus 102 Gvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~~~ 181 (322)
T PF00154_consen 102 GVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKSNT 181 (322)
T ss_dssp T--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTTT-
T ss_pred CccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhhce
Confidence 999999887766555554443 33446789999999876332 33333222 33456667777788889999
Q ss_pred cEEEecccCCc-c----C---cCCccchheeccEEEEEeCcee--------ceeeeEEEEecccCCccccceeecc-cCC
Q 007957 332 PVLLAGHVTKS-G----D---IAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFGSTDELGVFEMS-QLG 394 (583)
Q Consensus 332 tVIlisH~~k~-g----~---~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g~~~ei~~f~It-~~G 394 (583)
++|+++|+... + + ..|.+.+.|+++.++.+.+.+. ...-.+.++|||..++.....|.+. +.|
T Consensus 182 ~~i~INQ~R~~ig~~~g~~~~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~vkv~KnKva~P~k~a~~~i~y~~G 261 (322)
T PF00154_consen 182 TLIFINQVRDKIGVMFGNPETTPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKVKVVKNKVAPPFKKAEFDIYYGRG 261 (322)
T ss_dssp EEEEEEEESSSSSSSSSSSSCCTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEEEEEEESSS-TTEEEEEEEETTTE
T ss_pred EEEEeehHHHHHhhccCCCcCCCCCchhhhhhhhHHhhhcccccccCCcccccEEEEEEEEcccCCCcceeEEEEecCCe
Confidence 99999999865 2 2 2577899999999999975432 1223589999999988766666665 556
Q ss_pred eEEec
Q 007957 395 LQAVS 399 (583)
Q Consensus 395 L~~v~ 399 (583)
+....
T Consensus 262 id~~~ 266 (322)
T PF00154_consen 262 IDRES 266 (322)
T ss_dssp E-HHH
T ss_pred ECccc
Confidence 54333
No 74
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.65 E-value=3.7e-15 Score=150.01 Aligned_cols=153 Identities=27% Similarity=0.345 Sum_probs=117.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-------CCCCccEEEEeCccCHHHHHHHHHhccccc------cccc---
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHD-------LGEPSPVVYVSGEESVEQIGNRADRMMIAT------EELF--- 270 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~-------~~~~~~VLyis~Ees~~qi~~R~~rl~i~~------~~i~--- 270 (583)
|.+.+|+|+||+|||+|++++|..++.+.+ ..++.+|+|+++|++.+++..|+..+.... +.+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999998875422 124678999999999999999986654311 1111
Q ss_pred -------cC------CcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEec
Q 007957 271 -------LY------SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337 (583)
Q Consensus 271 -------i~------~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlis 337 (583)
+. ....++.+++.+...+|++||||++..+. .....+...+..++..|.++++++|++|++++
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~----~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFH----GVSENDNGAMDAVIKALRRIAAQTGAAILLVH 156 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhC----CCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 11 12235566666666799999999887652 12234677788899999999999999999999
Q ss_pred ccCCcc--------CcCCccchheeccEEEEEeC
Q 007957 338 HVTKSG--------DIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 338 H~~k~g--------~~ag~~~Le~~aD~Vl~Le~ 363 (583)
|.+|.+ ..+|+..+...++.++.|.+
T Consensus 157 H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~ 190 (239)
T cd01125 157 HVRKGSAKDGDTQEAARGASALVDGARWVRALTR 190 (239)
T ss_pred ccCcccccCcccccccCcHHHHhcccceEEEEee
Confidence 999864 26788899999999999975
No 75
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=170.59 Aligned_cols=166 Identities=15% Similarity=0.182 Sum_probs=133.8
Q ss_pred ccceEEEEEEcCCce-e----EEEEEEEeecCCCceEEEechh--HHHHHHHHHHHHH-hcCCCcccccEEEEecCCccc
Q 007957 416 LAGLAVAVIMDGSRS-F----LIEIQALCVSGSTVSRHVNGIQ--ASRADMIISVLMK-QAGLKLQENAIFLNVVSGVAL 487 (583)
Q Consensus 416 ~~G~~~s~~~~G~~~-~----lVEvqalv~~~~~p~~~~~G~~--~~~~~~~v~~~~k-~~g~~~~~~dI~vnl~~g~~~ 487 (583)
..|.+.++++.+..+ . ..+|-+.+.. |.++..-++-- ...+-.-..++++ .++.+..++|++|++++++..
T Consensus 427 ~VG~ingLsV~~~~~~~~~g~p~~is~~~~~-g~g~i~d~er~~~lag~I~~k~~mI~~~~~~~~~~~d~~i~fs~s~~~ 505 (647)
T COG1067 427 RVGQINGLSVIEVPGHHAFGEPARISCAVHK-GDGEIVDIERKAELAGNIHNKGMMIKQAFLMSILNYDIHIPFSASLVF 505 (647)
T ss_pred eeeeeeeeEEEecCCcccccceeEEEeEEec-CCCceeehhhhhhhhhhHHHHHHHHHHHhcCCcccCceeeEEeeEEEE
Confidence 578888888877666 3 4444444444 45666666643 3344444444444 578899999999999999655
Q ss_pred -------ccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHH-------HHHHcCCCEEEEeCCCh
Q 007957 488 -------TETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVS-------TVAKLGYRKCIVPKSAE 553 (583)
Q Consensus 488 -------~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~-------~A~~~G~k~~ivP~~n~ 553 (583)
+|+||.+|+|+||+||+.++|+.++++|||+|++.|+|.||+|+.+||. +|...|.++||||++|.
T Consensus 506 eqsy~~vDGDSAS~A~~~aliSAl~~~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~ 585 (647)
T COG1067 506 EQSYGEVDGDSASLAEACALISALSKIPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANV 585 (647)
T ss_pred EeecccccCchHHHHHHHHHHHHHhcCCCccceeEEeeeccCCceeecCCcchhhhhhHHHHHHHhhcCCceEEeccchH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred hhhh--h----cCC-CCcEEEEeCCHHHHHHHhhcC
Q 007957 554 KSLA--T----LGF-EQMEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 554 ~e~~--~----~~~-~~i~v~~v~~l~e~~~~l~~~ 582 (583)
+++. . ++. ..++|++|+|+.||+++++.+
T Consensus 586 ~~l~l~~~v~~av~~g~f~I~~V~~i~eal~~~~~~ 621 (647)
T COG1067 586 KDLSLSEDVVKAVKEGKFEIWPVETIDEALELLLGK 621 (647)
T ss_pred hhhhccHHHHHHhhcCceEEEEeCcHHHHHHHHhCC
Confidence 7742 1 111 358999999999999998753
No 76
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.63 E-value=3.3e-16 Score=153.67 Aligned_cols=210 Identities=18% Similarity=0.265 Sum_probs=154.5
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
.++|.| |. .+||.+||||++.-+++.|+|++|+|||.|..+++....... .++.+++++||++|.+ ++.++.-+
T Consensus 94 v~~ItT-gs--~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 94 VGSITT-GS--SALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred cceeec-ch--HHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 467877 76 999999999999999999999999999999999887654321 1345679999999975 56777777
Q ss_pred Hhcccccc----ccccCCcccHHH-------HHHHhccc-CCCEEEEccchhhhhhcccCCCC---CHHHHHHHHHHHHH
Q 007957 260 DRMMIATE----ELFLYSSTDIED-------IVEKVQPL-SPRALIIDSIQTVYLRGVAGSAG---GLMQVKECTSALLR 324 (583)
Q Consensus 260 ~rl~i~~~----~i~i~~~~~~e~-------i~~~i~~~-~p~lVVIDsi~~l~~~~~~~~~g---~~~qvrei~~~L~~ 324 (583)
++++++.+ |+..+..-+.++ +-+.+.++ +..+||+|+|...+..++++.-. ....+..++..|.+
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~ 250 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNK 250 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHH
Confidence 88887754 444433333333 22334444 78999999999999877765321 23335567788999
Q ss_pred HHHcCCCcEEEecccCCcc-----------CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccC
Q 007957 325 FAKKTNIPVLLAGHVTKSG-----------DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g-----------~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~ 393 (583)
+|++++++||+++|++.+- .++|...+.|.+.+.+.|+.++. ..|.-.+-|+..-|. ....|.|+..
T Consensus 251 laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh~~aHAsttRlilrkgrg-~eR~Akl~dSP~mpe-~e~~y~It~~ 328 (335)
T KOG1434|consen 251 LAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGHSWAHASTTRLILRKGRG-DERVAKLYDSPSMPE-AEASYVITPG 328 (335)
T ss_pred HHHhccEEEEEecceecCCcccccccccccCccccchhhhhhheeEEEEcCCc-ceeeeecccCCCCCc-ceEEEEEcCC
Confidence 9999999999999998652 24677899999999999998763 345555555543322 3468889998
Q ss_pred CeEE
Q 007957 394 GLQA 397 (583)
Q Consensus 394 GL~~ 397 (583)
|+..
T Consensus 329 Gi~d 332 (335)
T KOG1434|consen 329 GIRD 332 (335)
T ss_pred cccc
Confidence 8764
No 77
>PRK07773 replicative DNA helicase; Validated
Probab=99.62 E-value=2.2e-15 Score=177.33 Aligned_cols=167 Identities=23% Similarity=0.321 Sum_probs=125.2
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
..++| |+ ..||+++ ||+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+|||.||+.+|+..|+...
T Consensus 198 ~Gi~T-G~--~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~----~~~~V~~fSlEms~~ql~~R~~s~~ 269 (886)
T PRK07773 198 RGVPT-GF--TELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR----HRLAVAIFSLEMSKEQLVMRLLSAE 269 (886)
T ss_pred CCccC-Ch--hHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh----cCCeEEEEecCCCHHHHHHHHHHHh
Confidence 46777 87 9999987 899999999999999999999999999998864 257899999999999999998542
Q ss_pred -ccccc-------------------------ccccCC--cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCCCC
Q 007957 263 -MIATE-------------------------ELFLYS--STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 263 -~i~~~-------------------------~i~i~~--~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
+++.. ++++.+ ..++++|...+ .+.++++||||++|.+... ....+
T Consensus 270 ~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~--~~~~~ 347 (886)
T PRK07773 270 AKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG--KKYEN 347 (886)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC--CCCCC
Confidence 22211 122211 12345554433 3457999999999976421 12233
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEe
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le 362 (583)
...++.++++.|+.+|++++++||+++|+++. +|+++++.++. |+.+.+.
T Consensus 348 r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~~--d~~V~~~ 408 (886)
T PRK07773 348 RQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTG--DTLILRA 408 (886)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCcccC--cceEEec
Confidence 56678999999999999999999999999985 35667777774 4444443
No 78
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.54 E-value=5.2e-14 Score=130.80 Aligned_cols=150 Identities=26% Similarity=0.301 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc--cccccccCC----cccHH----
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI--ATEELFLYS----STDIE---- 278 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i--~~~~i~i~~----~~~~e---- 278 (583)
+++|.|+||+|||||+.+++..++.. +.+++|++.|+...+...++..+.. ...+..++. .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-----~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-----GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLS 75 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-----CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHH
Confidence 47899999999999999999998874 6789999999998877665432221 111222211 11121
Q ss_pred HHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccC-----cCCccchhe
Q 007957 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD-----IAGPRVLEH 353 (583)
Q Consensus 279 ~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~-----~ag~~~Le~ 353 (583)
.+.......+++++|||+++.+.........+....+.+.+..|.+.+++.++++|+++|..+... .+++..+++
T Consensus 76 ~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T cd01120 76 KAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLED 155 (165)
T ss_pred HHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceee
Confidence 223455667899999999998764322111223456778899999999999999999999987643 237788999
Q ss_pred eccEEEEEeC
Q 007957 354 IVDAVLYMEG 363 (583)
Q Consensus 354 ~aD~Vl~Le~ 363 (583)
++|.+++|.+
T Consensus 156 ~~d~~~~l~~ 165 (165)
T cd01120 156 IADTVIVLSR 165 (165)
T ss_pred ecceEEEEeC
Confidence 9999999864
No 79
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.52 E-value=1.8e-13 Score=136.37 Aligned_cols=209 Identities=21% Similarity=0.306 Sum_probs=139.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCccCHH-----HHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEESVE-----QIGN 257 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ees~~-----qi~~ 257 (583)
++++| |. ..||+.|+||++.+.++.|+|++|+|||.|++|++....... .+|-++.++||++|.+.. |+..
T Consensus 82 ~~ltt-gc--~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~ 158 (351)
T KOG1564|consen 82 SKLTT-GC--VALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSH 158 (351)
T ss_pred hhccc-cc--HHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHH
Confidence 35666 87 899999999999999999999999999999999988765321 234567899999997532 2222
Q ss_pred HHHhc-ccc-----c----cccccCCcccHHHHHHHh--------cccCCCEEEEccchhhhhhcccCCCC----CHHHH
Q 007957 258 RADRM-MIA-----T----EELFLYSSTDIEDIVEKV--------QPLSPRALIIDSIQTVYLRGVAGSAG----GLMQV 315 (583)
Q Consensus 258 R~~rl-~i~-----~----~~i~i~~~~~~e~i~~~i--------~~~~p~lVVIDsi~~l~~~~~~~~~g----~~~qv 315 (583)
...+. ..+ . +.+++..-.+++.+++.+ ++.+.++|||||+.+.|..+++..+. ....+
T Consensus 159 ~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l 238 (351)
T KOG1564|consen 159 TLPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHL 238 (351)
T ss_pred hcccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHH
Confidence 22222 111 1 125554445555555543 34468999999999998877764433 25667
Q ss_pred HHHHHHHHHHHHcCCCcEEEecccCCcc----CcCC-------------------ccchheeccEEEEEeCce-----e-
Q 007957 316 KECTSALLRFAKKTNIPVLLAGHVTKSG----DIAG-------------------PRVLEHIVDAVLYMEGEK-----F- 366 (583)
Q Consensus 316 rei~~~L~~lAk~~g~tVIlisH~~k~g----~~ag-------------------~~~Le~~aD~Vl~Le~~~-----~- 366 (583)
..+...|+.+|.+++.+|++++|++... +..| .-.+.+.+.+.+.+.+.. .
T Consensus 239 ~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~sgw~vPsLGL~WaN~v~tRl~l~r~~k~~~sa~ 318 (351)
T KOG1564|consen 239 FRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSSGWVVPSLGLTWANCVSTRLLLSRSTKNCDSAV 318 (351)
T ss_pred HHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhccccccccccccceeccccceeeeeeeccccccchh
Confidence 8889999999999999999999998641 1111 114455556666665411 0
Q ss_pred --ceeeeEEEEecccCCccccceeecccCCeE
Q 007957 367 --SSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 367 --~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
...|.++++-..+.|.+. ..|.|+..|+.
T Consensus 319 ~~~~~R~l~VvySp~~p~~~-~~~~It~eGI~ 349 (351)
T KOG1564|consen 319 SRSAKRTLRVVYSPYLPPSS-CEFMITAEGIC 349 (351)
T ss_pred hcccceEEEEEecCCCCCcc-eEEEEecceEe
Confidence 234666666666554443 35566666653
No 80
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.3e-12 Score=132.77 Aligned_cols=142 Identities=27% Similarity=0.388 Sum_probs=114.6
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-----CCCCccEEEEeCccCHHHHHHHH----Hhccc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-----LGEPSPVVYVSGEESVEQIGNRA----DRMMI 264 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-----~~~~~~VLyis~Ees~~qi~~R~----~rl~i 264 (583)
+-+|..+ ..|-.++|+|++|+||||++++++-.++.+.. -.++++|+|++.|...+.+..|+ .++++
T Consensus 80 ~lId~~f----r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 80 QLIDEFF----RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGL 155 (402)
T ss_pred hhhhHHh----hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCC
Confidence 4455554 78889999999999999999999988887543 23678999999999999998886 56788
Q ss_pred cccccccCCccc---------------HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC
Q 007957 265 ATEELFLYSSTD---------------IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329 (583)
Q Consensus 265 ~~~~i~i~~~~~---------------~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~ 329 (583)
.+.++..++.++ +.+.+..+++..|+++|||++-.++ .+......|++++++.+.++|.+.
T Consensus 156 sPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~----~G~s~s~vqv~~fi~~~rkla~~l 231 (402)
T COG3598 156 SPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFY----EGKSISDVQVKEFIKKTRKLARNL 231 (402)
T ss_pred ChHhhhheeccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhc----CCccchhHHHHHHHHHHHHHHHhc
Confidence 776665443321 4556666778899999999998876 344556789999999999999999
Q ss_pred CCcEEEecccCCcc
Q 007957 330 NIPVLLAGHVTKSG 343 (583)
Q Consensus 330 g~tVIlisH~~k~g 343 (583)
+|+||+++|..|.+
T Consensus 232 ~caIiy~hHtskss 245 (402)
T COG3598 232 ECAIIYIHHTSKSS 245 (402)
T ss_pred CCeEEEEecccccc
Confidence 99999999999874
No 81
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.40 E-value=1.2e-12 Score=135.75 Aligned_cols=143 Identities=24% Similarity=0.348 Sum_probs=94.4
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc----------
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL---------- 271 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i---------- 271 (583)
.-+.+|++++|.|+||+|||||+..+++.+.+..+ -+.+.++........-.+++++-.+...+
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G------~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l 99 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG------EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENL 99 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce------EEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHH
Confidence 34689999999999999999999999999887532 23333322221111111112211111000
Q ss_pred ------CC------cccHHHHHH--------------------------HhcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 272 ------YS------STDIEDIVE--------------------------KVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 272 ------~~------~~~~e~i~~--------------------------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
+. ...++++++ ..--.+|+++|+||+++.+ |+.
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GL---------Dp~ 170 (293)
T COG1131 100 EFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGL---------DPE 170 (293)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCC---------CHH
Confidence 00 001111111 1122469999999999866 666
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
...++.+.|++++++.+.+||+++|...+ ++++||+|+++++++..
T Consensus 171 ~~~~~~~~l~~l~~~g~~tvlissH~l~e--------~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 171 SRREIWELLRELAKEGGVTILLSTHILEE--------AEELCDRVIILNDGKII 216 (293)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCcHHH--------HHHhCCEEEEEeCCEEE
Confidence 77888899999999877999999999977 99999999999988753
No 82
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=7.2e-12 Score=121.64 Aligned_cols=140 Identities=20% Similarity=0.345 Sum_probs=99.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH--HHHHHHHhccccccccccCCccc----
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE--QIGNRADRMMIATEELFLYSSTD---- 276 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~--qi~~R~~rl~i~~~~i~i~~~~~---- 276 (583)
-+.+|+++.|.||+|+|||||++.+...-..+ ..-++++++.... ++..--+..|+...++.+++..+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~------~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleN 97 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD------SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN 97 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC------CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHH
Confidence 35889999999999999999999997765553 4578888854321 33333344555444333222110
Q ss_pred ---------------H-H---H--------------------------HHHHhcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 277 ---------------I-E---D--------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 277 ---------------~-e---~--------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
. + + .++..-..+|+++++||+++.+ |
T Consensus 98 v~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL---------D 168 (240)
T COG1126 98 VTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL---------D 168 (240)
T ss_pred HHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccC---------C
Confidence 0 0 0 1122223469999999999876 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+..+.+++..++++|++ |.|.++++|...- ....+|+|++|+.+..
T Consensus 169 PElv~EVL~vm~~LA~e-GmTMivVTHEM~F--------Ar~VadrviFmd~G~i 214 (240)
T COG1126 169 PELVGEVLDVMKDLAEE-GMTMIIVTHEMGF--------AREVADRVIFMDQGKI 214 (240)
T ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEechhHH--------HHHhhheEEEeeCCEE
Confidence 77788999999999987 8999999999854 8889999999998753
No 83
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.34 E-value=2.6e-12 Score=131.25 Aligned_cols=180 Identities=21% Similarity=0.273 Sum_probs=133.7
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc--cccc-----
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM--MIAT----- 266 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl--~i~~----- 266 (583)
+.|++.| +|..+|++++++|+.|+|||||+...+..++.+ |-+.||-|.|.+...+...+-.- +...
T Consensus 261 pvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q-----GVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~ 334 (514)
T KOG2373|consen 261 PVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ-----GVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLN 334 (514)
T ss_pred hHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHHhh-----hhhheeeeeecchHHHHHHHHHHHccCchHhhhh
Confidence 6788888 789999999999999999999999999999985 78999999999988776655221 1110
Q ss_pred ---------c--ccccC---CcccHHH----HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 267 ---------E--ELFLY---SSTDIED----IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 267 ---------~--~i~i~---~~~~~e~----i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
+ .+++. +...++. |..++.-++..-||||++|.|...+.-. -........++..++++|.+
T Consensus 335 ~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~-~Drf~~QD~iig~fR~fAT~ 413 (514)
T KOG2373|consen 335 SYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMA-LDRFHLQDRIIGYFRQFATQ 413 (514)
T ss_pred hhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhc-cchhhhHHHHHHHHHHHhhc
Confidence 1 11211 2223333 3334444577889999999887443322 12344566789999999999
Q ss_pred CCCcEEEecccCCcc--------CcCCccchheeccEEEEEeCcee---ceeeeEEEEecccC
Q 007957 329 TNIPVLLAGHVTKSG--------DIAGPRVLEHIVDAVLYMEGEKF---SSYRLLRSVKNRFG 380 (583)
Q Consensus 329 ~g~tVIlisH~~k~g--------~~ag~~~Le~~aD~Vl~Le~~~~---~~~R~L~i~KnR~g 380 (583)
++|.|-++-|..|+. .+-|+....+-||.|+.+.+.+. ...+.|.+.||||-
T Consensus 414 nn~HvTlVvHPRKed~d~El~t~s~fGsAkatQEADNVliiQdkrl~~~rgkkyLqi~KNRy~ 476 (514)
T KOG2373|consen 414 NNIHVTLVVHPRKEDGDTELDTQSFFGSAKATQEADNVLIIQDKRLDRDRGKKYLQILKNRYY 476 (514)
T ss_pred cceeEEEEecccccCCCceeeehhhccccccccccccEEEEeecccccccchhhhhhhhhccc
Confidence 999999999999873 34578888899999999986443 34578999999984
No 84
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.34 E-value=6.8e-12 Score=126.54 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=98.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccc------cc------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEE------LF------ 270 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~------i~------ 270 (583)
+++|+++.|.||||+|||||++.+++.+... ...+++++....+ ..++.++++++-+.. +.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~------~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~ 98 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPK------SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVL 98 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCC------CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHh
Confidence 5889999999999999999999999998864 3467777654322 223334444332111 10
Q ss_pred --------c---CCcccHHHHHHHhc-----------------------------ccCCCEEEEccchhhhhhcccCCCC
Q 007957 271 --------L---YSSTDIEDIVEKVQ-----------------------------PLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 271 --------i---~~~~~~e~i~~~i~-----------------------------~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
. .+..|.+.+.++++ .-+|+++++||+++.+
T Consensus 99 ~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L--------- 169 (258)
T COG1120 99 LGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL--------- 169 (258)
T ss_pred hcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc---------
Confidence 0 12222222322221 1249999999999876
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....+++..+++++++.|.|||++.|...- ...+||.++.|++++.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~--------A~ryad~~i~lk~G~i 217 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNL--------AARYADHLILLKDGKI 217 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHHhCCEEEEEECCeE
Confidence 56667799999999999999999999998743 7788999999998774
No 85
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.3e-11 Score=121.90 Aligned_cols=141 Identities=21% Similarity=0.297 Sum_probs=96.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHH-----------------------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ----------------------------- 254 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~q----------------------------- 254 (583)
+.+|++++|.|++|+|||||++.+++...... .-+++++.+....
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~------G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~ 103 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKPSS------GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR 103 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC------ceEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence 57899999999999999999999999877643 3455555322111
Q ss_pred -----------------HHHHHHhcccccccccc----CCcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCH
Q 007957 255 -----------------IGNRADRMMIATEELFL----YSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL 312 (583)
Q Consensus 255 -----------------i~~R~~rl~i~~~~i~i----~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~ 312 (583)
+..-++.++++.+-+.. ++....+++ +...-..+|+++|+||+++.+ |.
T Consensus 104 ~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaL---------D~ 174 (252)
T COG1124 104 ILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL---------DV 174 (252)
T ss_pred HHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhh---------cH
Confidence 11111122222111110 111112221 122223469999999999887 55
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 313 ~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
.-..++++.|.++.++++.+.|+|+|... .++|+||++++|+++...
T Consensus 175 siQa~IlnlL~~l~~~~~lt~l~IsHdl~--------~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 175 SVQAQILNLLLELKKERGLTYLFISHDLA--------LVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeCcHH--------HHHHHhhheeeeeCCeEE
Confidence 56678999999999999999999999985 499999999999988753
No 86
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.28 E-value=1.6e-11 Score=128.23 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=89.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY---------- 272 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~---------- 272 (583)
-+.+|++++|.|+||+|||||+..+++.+.+..+ .+++.+......-.....++++-+++..++
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G------~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~ 102 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG------SISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLL 102 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce------EEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHH
Confidence 3688999999999999999999999998776422 334444322110001111222211110000
Q ss_pred --------Ccc----cHHHHHH--------------------------HhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 273 --------SST----DIEDIVE--------------------------KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 273 --------~~~----~~e~i~~--------------------------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
+.. ..+++++ ..--.+|+++++||+++.+ |...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL---------D~~~ 173 (306)
T PRK13537 103 VFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL---------DPQA 173 (306)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC---------CHHH
Confidence 000 0011111 1122359999999999865 5666
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+++...|.++++ .|.|||+++|...+ ++.+||+|+.|++++.
T Consensus 174 ~~~l~~~l~~l~~-~g~till~sH~l~e--------~~~~~d~i~il~~G~i 216 (306)
T PRK13537 174 RHLMWERLRSLLA-RGKTILLTTHFMEE--------AERLCDRLCVIEEGRK 216 (306)
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 7777788888765 49999999999876 8999999999998764
No 87
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.25 E-value=2.5e-11 Score=128.55 Aligned_cols=139 Identities=19% Similarity=0.232 Sum_probs=88.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc------------ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE------------LFL 271 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~------------i~i 271 (583)
+.+|++++|.|+||+|||||+..+++.+.+..| .+++.+......-......+++-+++ +.+
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G------~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAG------KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce------EEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence 689999999999999999999999998876422 33343332111000001111111110 000
Q ss_pred ----C--Cccc----HHHHHH--------------------------HhcccCCCEEEEccchhhhhhcccCCCCCHHHH
Q 007957 272 ----Y--SSTD----IEDIVE--------------------------KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQV 315 (583)
Q Consensus 272 ----~--~~~~----~e~i~~--------------------------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qv 315 (583)
+ ...+ .+++++ ..-..+|+++|+||+++.+ |+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL---------D~~~r 208 (340)
T PRK13536 138 FGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL---------DPHAR 208 (340)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC---------CHHHH
Confidence 0 0000 011111 1112359999999999866 56667
Q ss_pred HHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 316 KECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 316 rei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+++...|.++++ .|.|||+++|...+ ++++||+|+.|++++.
T Consensus 209 ~~l~~~l~~l~~-~g~tilisSH~l~e--------~~~~~d~i~il~~G~i 250 (340)
T PRK13536 209 HLIWERLRSLLA-RGKTILLTTHFMEE--------AERLCDRLCVLEAGRK 250 (340)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 778888888866 49999999999866 8999999999998764
No 88
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=3e-11 Score=116.19 Aligned_cols=138 Identities=20% Similarity=0.353 Sum_probs=90.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH---HHHHHHHhccccccccccC--------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE---QIGNRADRMMIATEELFLY-------- 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~---qi~~R~~rl~i~~~~i~i~-------- 272 (583)
+.+|++++|.|+||+|||||+..+++.+... . .-+++.+..... ....+...+++..++..++
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-----~-G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-----S-GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN 96 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----c-eEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHh
Confidence 4789999999999999999999999877653 2 234555432111 0112222233222222222
Q ss_pred -----CcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcC
Q 007957 273 -----SSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346 (583)
Q Consensus 273 -----~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~a 346 (583)
+.....++ +...-..+|+++++||+++.+ |......+...|.+++++.+.++|+++|....
T Consensus 97 l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~---- 163 (178)
T cd03229 97 IALGLSGGQQQRVALARALAMDPDVLLLDEPTSAL---------DPITRREVRALLKSLQAQLGITVVLVTHDLDE---- 163 (178)
T ss_pred eeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH----
Confidence 11121221 222334579999999998765 55566677778888877768999999998755
Q ss_pred CccchheeccEEEEEeCc
Q 007957 347 GPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 347 g~~~Le~~aD~Vl~Le~~ 364 (583)
++.++|.++.|+.+
T Consensus 164 ----~~~~~d~i~~l~~g 177 (178)
T cd03229 164 ----AARLADRVVVLRDG 177 (178)
T ss_pred ----HHHhcCEEEEEeCC
Confidence 88899999999764
No 89
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=7e-11 Score=118.78 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=95.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C-------CCccEEEEeCcc--------CHHHH--------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G-------EPSPVVYVSGEE--------SVEQI-------- 255 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~-------~~~~VLyis~Ee--------s~~qi-------- 255 (583)
-+.+|+++.|.||||+|||||++.+++.+.+..+. + ...++.|+.--. +..++
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccc
Confidence 46889999999999999999999999988765441 0 113466665321 11111
Q ss_pred ---------------HHHHHhcccc---ccccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHH
Q 007957 256 ---------------GNRADRMMIA---TEELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316 (583)
Q Consensus 256 ---------------~~R~~rl~i~---~~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr 316 (583)
.+-+++.++. ...+.-++....++ +++.+-..+|+++++||+++.. |.....
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gv---------D~~~~~ 176 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGV---------DVAGQK 176 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccC---------CHHHHH
Confidence 1111222221 01111122222333 3334444579999999998754 556667
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
++...|.++.++ |+||++++|.... +...+|.|+.|.+.-
T Consensus 177 ~i~~lL~~l~~e-g~tIl~vtHDL~~--------v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 177 EIYDLLKELRQE-GKTVLMVTHDLGL--------VMAYFDRVICLNRHL 216 (254)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCcHH--------hHhhCCEEEEEcCee
Confidence 888888888888 9999999999854 888999999998654
No 90
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.24 E-value=3.6e-11 Score=125.36 Aligned_cols=140 Identities=14% Similarity=0.210 Sum_probs=88.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY---------- 272 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~---------- 272 (583)
-+.+|++++|.|+||+|||||+..+++.+.+.. ..+++.+.............+++-.++..++
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~------G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 88 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS------GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE 88 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc------eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHH
Confidence 357899999999999999999999999876642 2334444321110000011122111110000
Q ss_pred ------C--cc----cHHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 273 ------S--ST----DIEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 273 ------~--~~----~~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
. .. ..+++++. .--.+|+++++||+++.+ |...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL---------D~~~ 159 (302)
T TIGR01188 89 MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL---------DPRT 159 (302)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC---------CHHH
Confidence 0 00 01111111 112359999999999866 5666
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.+...|.+++++ |.+||+++|...+ ++.+||.|++|++++.
T Consensus 160 ~~~l~~~l~~~~~~-g~tvi~~sH~~~~--------~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 160 RRAIWDYIRALKEE-GVTILLTTHYMEE--------ADKLCDRIAIIDHGRI 202 (302)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 67777888887655 8999999999865 8899999999998764
No 91
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=4.6e-11 Score=119.85 Aligned_cols=141 Identities=18% Similarity=0.309 Sum_probs=97.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH--HHHHHHHHhcccccc---cccc------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV--EQIGNRADRMMIATE---ELFL------ 271 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~--~qi~~R~~rl~i~~~---~i~i------ 271 (583)
.+.+|+.++|.|+||+|||||+..+++.+.+.. +.| ++++.... ..+....++.|+... +..+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-----G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~ 99 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-----GEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED 99 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-----CEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcHHH
Confidence 468899999999999999999999999988752 233 66654322 222222223332211 1100
Q ss_pred ----------CCcccHH----H--------------------------HHHHhcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 272 ----------YSSTDIE----D--------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 272 ----------~~~~~~e----~--------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
++..+++ + .++.+-..+|+++|+||+++.+ |
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~L---------D 170 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL---------D 170 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCC---------C
Confidence 0000111 1 1122223459999999999876 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
....++++..++++.++.+.|+|+++|.... +..+||+++.|+.++.
T Consensus 171 ~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~--------~~~~ad~v~vl~~G~i 217 (235)
T COG1122 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLEL--------VLEYADRVVVLDDGKI 217 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH--------HHhhCCEEEEEECCEE
Confidence 6678899999999999999999999999865 8889999999998774
No 92
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=5.2e-11 Score=113.96 Aligned_cols=138 Identities=20% Similarity=0.276 Sum_probs=91.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccH------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI------ 277 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~------ 277 (583)
+.+|++++|.|+||+|||||+..+++.+... . .-+++.++........+...+++-.++..++....+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----~-G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-----S-GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----C-eEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhc
Confidence 4789999999999999999999999887653 2 234555543211101111233333333222222111
Q ss_pred -----HH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccch
Q 007957 278 -----ED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351 (583)
Q Consensus 278 -----e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~L 351 (583)
.+ .+...-..+|+++++||+++.+ |......+.+.|.+++++ +.++|+++|.... +
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tiii~th~~~~--------~ 158 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGL---------DPESRREFWELLRELKKE-GKTILLSSHILEE--------A 158 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--------H
Confidence 11 1222233589999999999865 555667788888888776 8999999998754 7
Q ss_pred heeccEEEEEeCce
Q 007957 352 EHIVDAVLYMEGEK 365 (583)
Q Consensus 352 e~~aD~Vl~Le~~~ 365 (583)
..+||.++.|+.++
T Consensus 159 ~~~~d~i~~l~~g~ 172 (173)
T cd03230 159 ERLCDRVAILNNGR 172 (173)
T ss_pred HHhCCEEEEEeCCC
Confidence 88999999998653
No 93
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=3.1e-11 Score=120.68 Aligned_cols=159 Identities=17% Similarity=0.280 Sum_probs=105.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc----------ccc---cc-
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM----------IAT---EE- 268 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~----------i~~---~~- 268 (583)
-+|+|+++++.|+||+||||+++.+.+.+.+.. ++| -+.+-.+-.+-....++++ ++. +.
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~-----G~v-~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~ 119 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS-----GKV-RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL 119 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCC-----CeE-EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH
Confidence 369999999999999999999999999988753 233 3333333221111111111 000 00
Q ss_pred -----cccCCcccH------------------------------HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 269 -----LFLYSSTDI------------------------------EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 269 -----i~i~~~~~~------------------------------e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
+|-++...+ ..=+.+.--++|+++++||++-.+ |+.
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL---------DV~ 190 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL---------DVN 190 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc---------chh
Confidence 110111100 000111123579999999998654 555
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccc
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDE 384 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~e 384 (583)
....+-+.|+.+..++++||++++|...+ ++.+||+|+.++.++......+..++-+||+..+
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~d--------i~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~ 253 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFDD--------IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKE 253 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchhh--------HHHhhhheEEeeCCcEeecccHHHHHHHhCCceE
Confidence 66677778888999999999999999977 9999999999998887665666777777776544
No 94
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.8e-11 Score=114.09 Aligned_cols=137 Identities=18% Similarity=0.311 Sum_probs=87.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC---HHHHHHHHHhccccc------------cc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES---VEQIGNRADRMMIAT------------EE 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees---~~qi~~R~~rl~i~~------------~~ 268 (583)
...|++++|.|+||+||||+++.++..+.+.. ..+++++-+. +..++.+ +|+.. ++
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~------G~v~idg~d~~~~p~~vrr~---IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDS------GKVTIDGVDTVRDPSFVRRK---IGVLFGERGLYARLTAREN 95 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhccCCC------ceEEEeecccccChHHHhhh---cceecCCcChhhhhhHHHH
Confidence 47899999999999999999999999998853 3555554332 2222222 22111 11
Q ss_pred ccc------CCccc----HHH--------------------------HHHHhcccCCCEEEEccchhhhhhcccCCCCCH
Q 007957 269 LFL------YSSTD----IED--------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL 312 (583)
Q Consensus 269 i~i------~~~~~----~e~--------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~ 312 (583)
+.. +...+ +++ .++..--++|+++|+|++++.+ |.
T Consensus 96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL---------Di 166 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGL---------DI 166 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc---------cH
Confidence 110 00000 011 1112223579999999998764 33
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 313 ~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
.. +..+..+..-.|+.|.+||+.+|...+ ++.+||+|+.|..++..
T Consensus 167 ~~-~r~~~dfi~q~k~egr~viFSSH~m~E--------vealCDrvivlh~Gevv 212 (245)
T COG4555 167 RT-RRKFHDFIKQLKNEGRAVIFSSHIMQE--------VEALCDRVIVLHKGEVV 212 (245)
T ss_pred HH-HHHHHHHHHHhhcCCcEEEEecccHHH--------HHHhhheEEEEecCcEE
Confidence 33 334444445556779999999999977 99999999999987653
No 95
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.22 E-value=1e-10 Score=115.83 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=96.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHH-HHHHHHHhccccccccccCCccc-
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVE-QIGNRADRMMIATEELFLYSSTD- 276 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~-qi~~R~~rl~i~~~~i~i~~~~~- 276 (583)
-+.+|+++.|.|++|+|||||+..+.....+. ...+++.+.+ +.. ....|.+.+|+-.+++.+++..+
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt------~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT------SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCC------CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence 36889999999999999999999988777663 2355555522 222 23445566666554433322111
Q ss_pred ---------------------HHHHHHH---------------------------hcccCCCEEEEccchhhhhhcccCC
Q 007957 277 ---------------------IEDIVEK---------------------------VQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 277 ---------------------~e~i~~~---------------------------i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
.+.+++. .--.+|++|+.||++.-+
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL------- 173 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL------- 173 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC-------
Confidence 1111111 111249999999998654
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
|...-.+++..|.+++++.|.|||+++|... +...||+++++..++
T Consensus 174 --D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~---------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 174 --DSKTAKEVLELLRELNKERGKTIIMVTHDPE---------LAKYADRVIELKDGK 219 (226)
T ss_pred --ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH---------HHHhCCEEEEEeCCe
Confidence 4555678899999999999999999999974 788999999998876
No 96
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.21 E-value=6.1e-11 Score=112.51 Aligned_cols=135 Identities=18% Similarity=0.276 Sum_probs=91.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HH-HHHHHhccccccccccCCcccHHHH-
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QI-GNRADRMMIATEELFLYSSTDIEDI- 280 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi-~~R~~rl~i~~~~i~i~~~~~~e~i- 280 (583)
+.+|++++|.|++|+|||||+..+++..... .+ -+++.++.... .. ..+...+++..+ ++.....++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-----~G-~v~~~g~~~~~~~~~~~~~~~i~~~~q----LS~G~~qrl~ 92 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPD-----SG-EILVDGKEVSFASPRDARRAGIAMVYQ----LSVGERQMVE 92 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----Ce-EEEECCEECCcCCHHHHHhcCeEEEEe----cCHHHHHHHH
Confidence 5889999999999999999999999887654 22 35555543211 01 111122332211 333333332
Q ss_pred HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEE
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLY 360 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~ 360 (583)
+...--.+|+++++||+++.+ |....+.+...|.+++++ +.++|+++|.... +...||.++.
T Consensus 93 laral~~~p~illlDEP~~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~--------~~~~~d~~~~ 154 (163)
T cd03216 93 IARALARNARLLILDEPTAAL---------TPAEVERLFKVIRRLRAQ-GVAVIFISHRLDE--------VFEIADRVTV 154 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEE
Confidence 222334589999999998765 555667777777777654 8999999999755 7889999999
Q ss_pred EeCcee
Q 007957 361 MEGEKF 366 (583)
Q Consensus 361 Le~~~~ 366 (583)
|+.++.
T Consensus 155 l~~g~i 160 (163)
T cd03216 155 LRDGRV 160 (163)
T ss_pred EECCEE
Confidence 987653
No 97
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=9.3e-11 Score=117.54 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.+++++.+.+||+++|.... +..+||.|+.|+.++.
T Consensus 154 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~--------~~~~~d~v~~l~~G~i 215 (235)
T cd03261 154 DPELLLYDEPTAGL---------DPIASGVIDDLIRSLKKELGLTSIMVTHDLDT--------AFAIADRIAVLYDGKI 215 (235)
T ss_pred CCCEEEecCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH--------HHHhcCEEEEEECCeE
Confidence 59999999999865 55566777888888877678999999998754 7889999999987664
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1.1e-10 Score=116.68 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=51.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++.+||.++.|++++.
T Consensus 158 ~p~lllLDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~--------~~~~~d~i~~l~~G~i 219 (233)
T cd03258 158 NPKVLLCDEATSAL---------DPETTQSILALLRDINRELGLTIVLITHEMEV--------VKRICDRVAVMEKGEV 219 (233)
T ss_pred CCCEEEecCCCCcC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55566777788888887779999999998754 7889999999987764
No 99
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.21 E-value=9.9e-11 Score=115.87 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++ .||.++.|+.++
T Consensus 158 ~p~lllLDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~-~~d~v~~l~~G~ 217 (218)
T cd03255 158 DPKIILADEPTGNL---------DSETGKEVMELLRELNKEAGTTIVVVTHDPEL--------AE-YADRIIELRDGK 217 (218)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH--------Hh-hhcEEEEeeCCc
Confidence 59999999999865 55566777888888877679999999998754 66 899999998654
No 100
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.20 E-value=1.6e-10 Score=111.34 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=93.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHH-------HHhccccc---ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNR-------ADRMMIAT---EEL 269 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R-------~~rl~i~~---~~i 269 (583)
+.+|++++|.|++|+|||||+..+++.+... ...+++.++.. ...+..+ ++.+++.. ...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~------~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~ 95 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPS------SGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPF 95 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCc
Confidence 5789999999999999999999999887653 22455555432 2222221 23334321 111
Q ss_pred ccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCc
Q 007957 270 FLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348 (583)
Q Consensus 270 ~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~ 348 (583)
.-++.....+ .+...-..+|+++++||+++.+ |......+...|.+++++.+.++|+++|....
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~L---------D~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~------ 160 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHL---------DIAHQIELLELLRRLARERGKTVVMVLHDLNL------ 160 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------
Confidence 1122222222 2222334589999999998765 55556677778887777668999999999755
Q ss_pred cchheeccEEEEEeCcee
Q 007957 349 RVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 349 ~~Le~~aD~Vl~Le~~~~ 366 (583)
+..+||.++.|+.++.
T Consensus 161 --~~~~~d~~~~l~~g~i 176 (180)
T cd03214 161 --AARYADRVILLKDGRI 176 (180)
T ss_pred --HHHhCCEEEEEECCEE
Confidence 7889999999987653
No 101
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=7.8e-11 Score=116.92 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=51.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||+++.|++++.
T Consensus 149 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~--------~~~~~d~i~~l~~G~i 210 (220)
T cd03265 149 RPEVLFLDEPTIGL---------DPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE--------AEQLCDRVAIIDHGRI 210 (220)
T ss_pred CCCEEEEcCCccCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999865 55566777888888888779999999998755 8889999999988764
No 102
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.20 E-value=1.1e-10 Score=115.38 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... ++.+||.++.|++++
T Consensus 156 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~--------~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 156 KPPLLLADEPTGNL---------DPELSRDIMRLFEEFNRR-GTTVLVATHDINL--------VETYRHRTLTLSRGR 215 (216)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEeCCc
Confidence 59999999999865 555666777778777654 8999999998754 788999999998654
No 103
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1e-10 Score=117.49 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=52.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|+.++.
T Consensus 162 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~--------~~~~~d~v~~l~~G~i 223 (241)
T cd03256 162 QPKLILADEPVASL---------DPASSRQVMDLLKRINREEGITVIVSLHQVDL--------AREYADRIVGLKDGRI 223 (241)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 55667778888888887779999999999865 8889999999987663
No 104
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.19 E-value=1.6e-10 Score=116.33 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 163 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~--------~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 163 QPDLILADEPIASL---------DPKTSKQVMDYLKRINKEDGITVIINLHQVDL--------AKKYADRIVGLKAGEI 224 (243)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhcCeEEEEECCEE
Confidence 49999999999765 55566777788888877778999999998755 7889999999987653
No 105
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.19 E-value=2.8e-10 Score=123.64 Aligned_cols=159 Identities=15% Similarity=0.232 Sum_probs=128.5
Q ss_pred EEEEEcC-CceeEEEEEEEeecCCCceEEEechhHHH------HHHHHHHHHHhcCCCcccccEEEEecCCcc-cccccc
Q 007957 421 VAVIMDG-SRSFLIEIQALCVSGSTVSRHVNGIQASR------ADMIISVLMKQAGLKLQENAIFLNVVSGVA-LTETAG 492 (583)
Q Consensus 421 ~s~~~~G-~~~~lVEvqalv~~~~~p~~~~~G~~~~~------~~~~v~~~~k~~g~~~~~~dI~vnl~~g~~-~~gp~~ 492 (583)
+.....| ..+....+.+.++| |-++..+.+.|..+ ++.-.-++..-+|.++...|+|+-+....+ +.|||+
T Consensus 39 v~~~s~g~~~gv~~~~~vtv~p-G~G~v~v~t~P~t~~d~~~SArvAa~~A~~~~Gvd~ssyd~~i~v~a~~pVVGgPSa 117 (579)
T COG1750 39 VSVTSQGQGVGVPINISVTVTP-GDGRVYVATFPYTQIDMQGSARVAAGVALRLAGVDMSSYDVYIAVEADSPVVGGPSA 117 (579)
T ss_pred EEEEecCCcceeeeeeeeeecC-CCceEEeecCCCchhccchhhHHHHHHHHHhhCCCccceeEEEEEecCCCeecCccc
Confidence 3344445 45666777777777 45667777776322 344444667778999999999999988865 566999
Q ss_pred cHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChh--h-hhhcCCCCcEEEEe
Q 007957 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEK--S-LATLGFEQMEFIGC 569 (583)
Q Consensus 493 DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~--e-~~~~~~~~i~v~~v 569 (583)
.+++++|+++++.+..++.+++|+|-|.-||.+-||+|+++++.+|.+.|.|-+++|.+++. + .+-....+++++.|
T Consensus 118 gg~mtva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~~~d~~~Y~k~~gl~vieV 197 (579)
T COG1750 118 GGYMTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRIVVDLVEYGKSLGLKVIEV 197 (579)
T ss_pred chHhHHHHHHHHhCCCcccCeeeeeeecCCCccccccchHHHHHHHHhCCCeEEEeeccccccccHHHHHhhcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876 1 11112348999999
Q ss_pred CCHHHHHHHhh
Q 007957 570 KNLKEVINVVF 580 (583)
Q Consensus 570 ~~l~e~~~~l~ 580 (583)
.++.|++.++.
T Consensus 198 ~~~~~aiyy~t 208 (579)
T COG1750 198 GTLEDAAYYLT 208 (579)
T ss_pred echhhhhhhhc
Confidence 99999999875
No 106
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.19 E-value=1.1e-10 Score=115.44 Aligned_cols=61 Identities=16% Similarity=0.334 Sum_probs=49.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +..++|.++.|++++.
T Consensus 154 ~p~illlDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~--------~~~~~d~i~~l~~G~i 214 (218)
T cd03266 154 DPPVLLLDEPTTGL---------DVMATRALREFIRQLRA-LGKCILFSTHIMQE--------VERLCDRVVVLHRGRV 214 (218)
T ss_pred CCCEEEEcCCCcCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999765 55566777788887765 48999999998755 7889999999987653
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=7.2e-11 Score=116.53 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=52.6
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++.+||.|+.|++++.
T Consensus 147 ~~p~~lllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~~~d~v~~l~~G~i 209 (213)
T cd03259 147 REPSLLLLDEPLSAL---------DAKLREELREELKELQRELGITTIYVTHDQEE--------ALALADRIAVMNEGRI 209 (213)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH--------HHHhcCEEEEEECCEE
Confidence 369999999999866 55667778888888887779999999998754 7889999999987653
No 108
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=117.18 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=107.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--------CHHHHHHHHHhccccccccccC--
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--------SVEQIGNRADRMMIATEELFLY-- 272 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--------s~~qi~~R~~rl~i~~~~i~i~-- 272 (583)
-+.+|+++.|.|++|+||||+++.++....+. ...+|+.+.+ ..+.+.+-++..|+..+.+.-+
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt------~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPh 108 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPT------SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPH 108 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC------CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCc
Confidence 35889999999999999999999999988764 2355666543 2334555667777665544433
Q ss_pred --CcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCcc
Q 007957 273 --SSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349 (583)
Q Consensus 273 --~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~ 349 (583)
+....++ .++.+-..+|+++|.|++.+++ |.+-...+++.|.++-++.|.+.++++|...-
T Consensus 109 elSGGQrQRi~IARALal~P~liV~DEpvSaL---------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v------- 172 (268)
T COG4608 109 ELSGGQRQRIGIARALALNPKLIVADEPVSAL---------DVSVQAQILNLLKDLQEELGLTYLFISHDLSV------- 172 (268)
T ss_pred ccCchhhhhHHHHHHHhhCCcEEEecCchhhc---------chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-------
Confidence 2333444 3344556799999999999876 55556678888899999999999999999854
Q ss_pred chheeccEEEEEeCceec
Q 007957 350 VLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 350 ~Le~~aD~Vl~Le~~~~~ 367 (583)
+.+++|+|..|+.++..
T Consensus 173 -v~~isdri~VMy~G~iV 189 (268)
T COG4608 173 -VRYISDRIAVMYLGKIV 189 (268)
T ss_pred -hhhhcccEEEEecCcee
Confidence 99999999999987753
No 109
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.18 E-value=1.2e-10 Score=111.32 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=88.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCCc--------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYSS-------- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~~-------- 274 (583)
+.+|++++|.|++|+|||||+..+++..... . .-+++.++.... ....+...+++..++..++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----~-G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPT-----S-GRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCC-----C-CeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcC
Confidence 4789999999999999999999999987654 2 245556543211 011112233433333222221
Q ss_pred -ccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchh
Q 007957 275 -TDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352 (583)
Q Consensus 275 -~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le 352 (583)
....+ .+...-..+|+++++||+++.+ |......+...|.++++ .+.++|+++|.... ++
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~--------~~ 160 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHL---------DVEGERALNQAIAALKA-AGATRIVIAHRPET--------LA 160 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccc---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HH
Confidence 11111 1222234589999999999765 55556677777777765 48999999998743 65
Q ss_pred eeccEEEEEeCce
Q 007957 353 HIVDAVLYMEGEK 365 (583)
Q Consensus 353 ~~aD~Vl~Le~~~ 365 (583)
.||.++.|++++
T Consensus 161 -~~d~v~~l~~G~ 172 (173)
T cd03246 161 -SADRILVLEDGR 172 (173)
T ss_pred -hCCEEEEEECCC
Confidence 699999998653
No 110
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.18 E-value=1.3e-10 Score=123.02 Aligned_cols=140 Identities=18% Similarity=0.306 Sum_probs=93.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCC------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYS------ 273 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~------ 273 (583)
+.+|++++|.|+||+|||||++.+++...... .-++++++. +..++......+++...+..++.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~------G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~e 101 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTS------GSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFG 101 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc------eEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHH
Confidence 57899999999999999999999998876642 244555543 12233222223333222111110
Q ss_pred ------------ccc----HHHHHHHh--------------------------cccCCCEEEEccchhhhhhcccCCCCC
Q 007957 274 ------------STD----IEDIVEKV--------------------------QPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 274 ------------~~~----~e~i~~~i--------------------------~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
... ..++++.+ -..+|+++++||+++.+ |
T Consensus 102 ni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~L---------D 172 (343)
T TIGR02314 102 NVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSAL---------D 172 (343)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC---------C
Confidence 000 11111111 11249999999999865 5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
......++..|.++.++.++|||+++|.... +..+||.|++|++++.
T Consensus 173 ~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~--------v~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 173 PATTQSILELLKEINRRLGLTILLITHEMDV--------VKRICDCVAVISNGEL 219 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 6667788888888888889999999998854 8889999999998764
No 111
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.18 E-value=1.8e-10 Score=113.22 Aligned_cols=138 Identities=18% Similarity=0.256 Sum_probs=85.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY----------- 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~----------- 272 (583)
+.+|++++|.|+||+|||||+..+++......+ -+++.++.... ...+...+++-.++..++
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G------~i~~~g~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 95 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG------EITFDGKSYQK-NIEALRRIGALIEAPGFYPNLTARENLRL 95 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce------EEEECCCcccc-hHHHHhhEEEecCCCccCccCcHHHHHHH
Confidence 578999999999999999999999988765422 23344332111 011111111111110000
Q ss_pred -------CcccHHHHHH--------------------------HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHH
Q 007957 273 -------SSTDIEDIVE--------------------------KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECT 319 (583)
Q Consensus 273 -------~~~~~e~i~~--------------------------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~ 319 (583)
....++++++ ..-..+|+++++||+++.+ |......+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L---------D~~~~~~l~ 166 (208)
T cd03268 96 LARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL---------DPDGIKELR 166 (208)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC---------CHHHHHHHH
Confidence 0001111111 1112359999999999865 555566777
Q ss_pred HHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 320 SALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 320 ~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
..|.++++ .+.++|+++|.... +..++|.++.|++++.
T Consensus 167 ~~l~~~~~-~~~tii~~tH~~~~--------~~~~~d~v~~l~~g~i 204 (208)
T cd03268 167 ELILSLRD-QGITVLISSHLLSE--------IQKVADRIGIINKGKL 204 (208)
T ss_pred HHHHHHHH-CCCEEEEEcCCHHH--------HHHhcCEEEEEECCEE
Confidence 77877776 58999999998755 7889999999987653
No 112
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.18 E-value=1.1e-10 Score=121.66 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=51.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++++ .|.+||+++|.... ++.+||.++.|++++.
T Consensus 152 ~~p~lllLDEPt~gL---------D~~~~~~l~~~l~~~~~-~g~til~~sH~~~~--------~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 152 NDPQLLILDEPTTGL---------DPHARHLIWERLRSLLA-RGKTILLTTHFMEE--------AERLCDRLCVLESGRK 213 (303)
T ss_pred cCCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHh-CCCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999865 55666777888888866 48999999999865 8899999999988764
No 113
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=1e-10 Score=115.32 Aligned_cols=62 Identities=15% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 146 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 207 (211)
T cd03298 146 DKPVLLLDEPFAAL---------DPALRAEMLDLVLDLHAETKMTVLMVTHQPED--------AKRLAQRVVFLDNGRI 207 (211)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHhhhCEEEEEECCEE
Confidence 59999999999865 55566777888888887779999999999865 8889999999997763
No 114
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.4e-10 Score=117.95 Aligned_cols=140 Identities=18% Similarity=0.312 Sum_probs=98.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc---cCHHHHHHHHHhccccccccccCC------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE---ESVEQIGNRADRMMIATEELFLYS------ 273 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E---es~~qi~~R~~rl~i~~~~i~i~~------ 273 (583)
-++.|+++.|.|++|+|||||++.||+...++ ..-+++.++ +... +..|.+++|+-..++-++.
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~------~G~I~~~~~~l~D~~~-~~~~~R~VGfvFQ~YALF~HmtVa~ 96 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPD------AGRIRLNGRVLFDVSN-LAVRDRKVGFVFQHYALFPHMTVAD 96 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCC------CceEEECCEeccchhc-cchhhcceeEEEechhhcccchHHh
Confidence 35789999999999999999999999998875 335666666 3333 4444455554333221110
Q ss_pred --------------c----ccHHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCC
Q 007957 274 --------------S----TDIEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 274 --------------~----~~~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+ ...+++++. .....|+++++||+..-+
T Consensus 97 NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL-------- 168 (345)
T COG1118 97 NIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL-------- 168 (345)
T ss_pred hhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh--------
Confidence 0 012223322 222359999999998765
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|..-..++-+.|.++..+.|+++++++|...+ ...++|+|+.|+.+++
T Consensus 169 -Da~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee--------a~~ladrvvvl~~G~I 216 (345)
T COG1118 169 -DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE--------ALELADRVVVLNQGRI 216 (345)
T ss_pred -hHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH--------HHhhcceEEEecCCee
Confidence 44445667778888888999999999999866 7889999999998865
No 115
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=1.7e-10 Score=122.49 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=52.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.|.|||+++|.... +..+||++++|++++.
T Consensus 158 ~p~iLlLDEPts~L---------D~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~--------i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 158 NPKVLLCDEATSAL---------DPATTRSILELLKDINRELGLTIVLITHEMDV--------VKRICDRVAVIDAGRL 219 (343)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999866 55667778888888888889999999999855 8889999999998764
No 116
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.17 E-value=1.1e-10 Score=112.51 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=87.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHH-HH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED-IV 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~-i~ 281 (583)
-+.+|++++|.|+||+|||||+..+++.+.... +.+ ++.+.. +++..+... ++.....+ .+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~i-~~~g~~-----------i~~~~q~~~-LSgGq~qrv~l 82 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-----DND-EWDGIT-----------PVYKPQYID-LSGGELQRVAI 82 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-----cEE-EECCEE-----------EEEEcccCC-CCHHHHHHHHH
Confidence 458999999999999999999999999877642 233 333321 111111111 22222222 22
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
...-..+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++.+||.++.|
T Consensus 83 aral~~~p~lllLDEPts~L---------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~--------~~~~~d~i~~l 145 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYL---------DIEQRLNAARAIRRLSEEGKKTALVVEHDLAV--------LDYLSDRIHVF 145 (177)
T ss_pred HHHHhcCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH--------HHHhCCEEEEE
Confidence 22334589999999998765 55566677778888777655899999999755 88899999999
Q ss_pred eCce
Q 007957 362 EGEK 365 (583)
Q Consensus 362 e~~~ 365 (583)
++..
T Consensus 146 ~~~~ 149 (177)
T cd03222 146 EGEP 149 (177)
T ss_pred cCCC
Confidence 8653
No 117
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.17 E-value=2.9e-10 Score=112.16 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=94.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT------------ 266 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~------------ 266 (583)
-+++|+++.|.|++|+|||||++.+++.+.+.. .-+++.+++ +.++...-.+++|+-.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~------GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~ 103 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDK------GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVF 103 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCC------CeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchh
Confidence 369999999999999999999999999998853 355555554 2323322223444321
Q ss_pred ccccc-------CCcccHHH-------------------------------HHHHhcccCCCEEEEccchhhhhhcccCC
Q 007957 267 EELFL-------YSSTDIED-------------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 267 ~~i~i-------~~~~~~e~-------------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
+|+-+ +++..+++ .++..-..+|+++++||+++.+
T Consensus 104 eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGL------- 176 (263)
T COG1127 104 ENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGL------- 176 (263)
T ss_pred HhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCC-------
Confidence 11111 11111111 1222233469999999999876
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|+.....+...++++-+..+.|+++++|...+ +..+||+|++|.+++.
T Consensus 177 --DPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s--------~~~i~Drv~~L~~gkv 224 (263)
T COG1127 177 --DPISAGVIDELIRELNDALGLTVIMVTHDLDS--------LLTIADRVAVLADGKV 224 (263)
T ss_pred --CcchHHHHHHHHHHHHHhhCCEEEEEECChHH--------HHhhhceEEEEeCCEE
Confidence 33344555566666777899999999999865 8899999999998764
No 118
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.16 E-value=1.3e-10 Score=116.73 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=53.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |....+.+...|.+++++.+.+||+++|.... +..+||.++.|+.++.
T Consensus 170 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 232 (236)
T cd03267 170 HEPEILFLDEPTIGL---------DVVAQENIRNFLKEYNRERGTTVLLTSHYMKD--------IEALARRVLVIDKGRL 232 (236)
T ss_pred cCCCEEEEcCCCCCC---------CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH--------HHHhCCEEEEEeCCEE
Confidence 369999999999765 56667788888888888778999999999855 8889999999987653
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.16 E-value=2.2e-10 Score=112.94 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... ++.+||.++.|++++
T Consensus 154 ~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~--------~~~~~d~i~~l~~G~ 213 (214)
T cd03292 154 SPTILIADEPTGNL---------DPDTTWEIMNLLKKINKA-GTTVVVATHAKEL--------VDTTRHRVIALERGK 213 (214)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------HHHhCCEEEEEeCCc
Confidence 59999999999865 555566777778777654 8999999998754 788999999998654
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.16 E-value=1.3e-10 Score=114.33 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... ++.+||.++.|+.+
T Consensus 152 ~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~--------~~~~~d~i~~l~~G 210 (211)
T cd03225 152 DPDILLLDEPTAGL---------DPAGRRELLELLKKLKAE-GKTIIIVTHDLDL--------LLELADRVIVLEDG 210 (211)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------HHHhCCEEEEEeCC
Confidence 59999999999865 555666777888888776 8999999999755 88899999999764
No 121
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=4e-11 Score=118.20 Aligned_cols=160 Identities=18% Similarity=0.308 Sum_probs=93.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C------CCccEEEEeCcc------C-HHHHHH---------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G------EPSPVVYVSGEE------S-VEQIGN--------- 257 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~------~~~~VLyis~Ee------s-~~qi~~--------- 257 (583)
+++|++.++.|+||+||||..+.+++.+....+. + ...++-|+.-|- . .+|++-
T Consensus 25 v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~ 104 (300)
T COG4152 25 VPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK 104 (300)
T ss_pred ecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH
Confidence 5899999999999999999999999998875320 0 001222322221 0 112111
Q ss_pred ---------HHHhccccc---cccccCCcccHHHHHHHh--cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHH
Q 007957 258 ---------RADRMMIAT---EELFLYSSTDIEDIVEKV--QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALL 323 (583)
Q Consensus 258 ---------R~~rl~i~~---~~i~i~~~~~~e~i~~~i--~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~ 323 (583)
.++|+.+.. ..+.-++..+-+. ++.+ --++|++||+|++.+.+++ -+...+++.+..+
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQK-IQfisaviHePeLlILDEPFSGLDP------VN~elLk~~I~~l- 176 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQK-IQFISAVIHEPELLILDEPFSGLDP------VNVELLKDAIFEL- 176 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHHhhhhhhHH-HHHHHHHhcCCCEEEecCCccCCCh------hhHHHHHHHHHHH-
Confidence 112222211 0111111111111 1111 1357999999999987632 2333333333333
Q ss_pred HHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCCc
Q 007957 324 RFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGST 382 (583)
Q Consensus 324 ~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~ 382 (583)
++.|.|||+.+|.... +|.+||.++.|.+++...+..+..+|+-||+.
T Consensus 177 ---k~~GatIifSsH~Me~--------vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk 224 (300)
T COG4152 177 ---KEEGATIIFSSHRMEH--------VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKK 224 (300)
T ss_pred ---HhcCCEEEEecchHHH--------HHHHhhhhheecCCceEEeccHHHHHHhcCCc
Confidence 4679999999999865 99999999999988755555555555555543
No 122
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.16 E-value=9.6e-11 Score=115.56 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=52.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |....+.+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 147 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~--------~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 147 REPKVFLMDEPLSNL---------DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE--------AMTMADRIAVMNDGQI 209 (213)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhcCeEEEEECCEE
Confidence 469999999999865 56667788888888888779999999998754 7889999999987653
No 123
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=3e-10 Score=113.04 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=89.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---------CCCccEEEEeCccCHH---------------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---------GEPSPVVYVSGEESVE--------------------- 253 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---------~~~~~VLyis~Ees~~--------------------- 253 (583)
+.+|+++.|.|++|||||||+..+|+......+. +.+..+.|+=-+...-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKA 105 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchH
Confidence 5889999999999999999999999998775431 0111222222221110
Q ss_pred ----HHHHHHHhccccc-cccc--cCCccc-HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007957 254 ----QIGNRADRMMIAT-EELF--LYSSTD-IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325 (583)
Q Consensus 254 ----qi~~R~~rl~i~~-~~i~--i~~~~~-~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~l 325 (583)
.....++..|+.. ++-| -++..- -.-.+...-..+|+++++||+..-+ |......+...|.++
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL---------DalTR~~lq~~l~~l 176 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL---------DALTREELQDELLRL 176 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh---------hHHHHHHHHHHHHHH
Confidence 1111112222210 0000 001000 1112223334579999999998765 333445566788889
Q ss_pred HHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.++.+.||++|+|.-.+ .-.++|+|+.|....
T Consensus 177 w~~~~~TvllVTHdi~E--------Av~LsdRivvl~~~P 208 (248)
T COG1116 177 WEETRKTVLLVTHDVDE--------AVYLADRVVVLSNRP 208 (248)
T ss_pred HHhhCCEEEEEeCCHHH--------HHhhhCEEEEecCCC
Confidence 99999999999999877 778999999998654
No 124
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=2.1e-10 Score=112.92 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=50.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+.+.|.+++++ +.+||+++|.... +.++||.++.|+.++.
T Consensus 145 ~~p~~lllDEP~~~L---------D~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~--------~~~~~d~i~~l~~g~i 206 (210)
T cd03269 145 HDPELLILDEPFSGL---------DPVNVELLKDVIRELARA-GKTVILSTHQMEL--------VEELCDRVLLLNKGRA 206 (210)
T ss_pred cCCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--------HHHhhhEEEEEeCCEE
Confidence 369999999999765 555666777777777664 8999999998754 7889999999987653
No 125
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.15 E-value=2.4e-10 Score=114.77 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=50.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.++|+++|.... ++. ||.++.|+.++.
T Consensus 149 ~~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------~~~-~d~i~~l~~G~i 210 (236)
T TIGR03864 149 HRPALLLLDEPTVGL---------DPASRAAIVAHVRALCRDQGLSVLWATHLVDE--------IEA-DDRLVVLHRGRV 210 (236)
T ss_pred cCCCEEEEcCCccCC---------CHHHHHHHHHHHHHHHHhCCCEEEEEecChhh--------Hhh-CCEEEEEeCCeE
Confidence 359999999999865 56667778888888887678999999999865 665 999999987653
No 126
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.15 E-value=2.1e-10 Score=112.53 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++ +.++|+++|.... ++.+||.++.|++++
T Consensus 144 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~--------~~~~~d~i~~l~~G~ 203 (205)
T cd03226 144 GKDLLIFDEPTSGL---------DYKNMERVGELIRELAAQ-GKAVIVITHDYEF--------LAKVCDRVLLLANGA 203 (205)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCE
Confidence 59999999999765 555666777777777654 8999999998755 888999999998764
No 127
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=1.6e-10 Score=110.33 Aligned_cols=135 Identities=21% Similarity=0.334 Sum_probs=87.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCCcccH-----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYSSTDI----- 277 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~~~~~----- 277 (583)
+.+|++++|.|+||+|||||+..+++.+... . ..+++.++.... ....+...+++-.++..++..+-.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-----~-G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-----S-GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-----C-CEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhC
Confidence 5789999999999999999999999987653 2 245666653221 011112233433322222222111
Q ss_pred ----HHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchh
Q 007957 278 ----EDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352 (583)
Q Consensus 278 ----e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le 352 (583)
.++ +...-..+|+++++||+++.+ |.....++...|.++. + +.++|+++|.... ++
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gL---------D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~--------~~ 159 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSAL---------DPETEALILEALRALA-K-GKTVIVIAHRLST--------IR 159 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCC---------CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH--------HH
Confidence 111 122233589999999999765 4455566677777664 3 6899999999865 77
Q ss_pred eeccEEEEEeCc
Q 007957 353 HIVDAVLYMEGE 364 (583)
Q Consensus 353 ~~aD~Vl~Le~~ 364 (583)
. ||.++.|+++
T Consensus 160 ~-~d~~~~l~~g 170 (171)
T cd03228 160 D-ADRIIVLDDG 170 (171)
T ss_pred h-CCEEEEEcCC
Confidence 7 9999999764
No 128
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.4e-10 Score=116.36 Aligned_cols=142 Identities=20% Similarity=0.325 Sum_probs=100.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCCccc---
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYSSTD--- 276 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~~~~--- 276 (583)
+++|++++|.|.+|+|||||++.+-..-.+. ..-+++++++ +...++..-+++|+-...+.+++..+
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt------sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~ 102 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLERPT------SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFE 102 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccCCCC------CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHh
Confidence 5889999999999999999999886554443 2344555543 44455555556666554433322111
Q ss_pred -------------------HHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 277 -------------------IEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 277 -------------------~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
+.++++. .-..+|++++.||.++.+ |
T Consensus 103 NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSAL---------D 173 (339)
T COG1135 103 NVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL---------D 173 (339)
T ss_pred hhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccC---------C
Confidence 1112221 112359999999999876 5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceece
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~ 368 (583)
+..-..++..|+++-+++|+||++|+|... .+..+||+|.+|+.++..+
T Consensus 174 P~TT~sIL~LL~~In~~lglTIvlITHEm~--------Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 174 PETTQSILELLKDINRELGLTIVLITHEME--------VVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEEechHH--------HHHHHhhhheEeeCCEEEE
Confidence 556678899999999999999999999984 4999999999999987644
No 129
>PRK10908 cell division protein FtsE; Provisional
Probab=99.14 E-value=3.7e-10 Score=112.25 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=49.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.++|+++|.... ++.+||.++.|++++.
T Consensus 155 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 155 KPAVLLADEPTGNL---------DDALSEGILRLFEEFNRV-GVTVLMATHDIGL--------ISRRSYRMLTLSDGHL 215 (222)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 555566777777777654 8999999998755 8889999999987653
No 130
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.14 E-value=2.9e-10 Score=112.24 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... ++.+||.++.|+++
T Consensus 155 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~--------~~~~~d~i~~l~~G 213 (214)
T TIGR02673 155 SPPLLLADEPTGNL---------DPDLSERILDLLKRLNK-RGTTVIVATHDLSL--------VDRVAHRVIILDDG 213 (214)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------HHHhcCEEEEecCC
Confidence 59999999998765 55556677777777755 48999999999865 88899999999764
No 131
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=1.9e-10 Score=114.22 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=88.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C-----CCccEEEEeCcc------CHH-HHHHH---------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G-----EPSPVVYVSGEE------SVE-QIGNR--------- 258 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~-----~~~~VLyis~Ee------s~~-qi~~R--------- 258 (583)
+.+|++++|.|+||+|||||+..+++......+. + ....+.|+..+. +.. .+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999999999887554320 0 012344443221 111 11100
Q ss_pred ---------HHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007957 259 ---------ADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325 (583)
Q Consensus 259 ---------~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~l 325 (583)
++++++.. ....-++.....+ .+...-..+|+++++||+++.+ |......+...|.++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L---------D~~~~~~~~~~l~~~ 177 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL---------DALTREQLQEELLDI 177 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC---------CHHHHHHHHHHHHHH
Confidence 01111110 0000011111111 1111223369999999999865 566667788888888
Q ss_pred HHcCCCcEEEecccCCccCcCCccchheeccEEEEEe--Cce
Q 007957 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME--GEK 365 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le--~~~ 365 (583)
.++.+.+||+++|.... +..+||.++.|+ +++
T Consensus 178 ~~~~~~tiii~sH~~~~--------~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 178 WRETGKTVLLVTHDIDE--------AVFLADRVVVLSARPGR 211 (220)
T ss_pred HHHcCCEEEEEecCHHH--------HHHhCCEEEEEECCCCE
Confidence 77778999999999854 788999999998 454
No 132
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.13 E-value=1.8e-10 Score=120.00 Aligned_cols=61 Identities=25% Similarity=0.400 Sum_probs=49.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++|++++.+ |......+...|.+++ + +.+||+++|...+ ++.+||+++.|+.++.
T Consensus 150 ~~p~lliLDEPt~gL---------D~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~--------~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 150 HDPKVLILDEPTTGL---------DPNQLVEIRNVIKNIG-K-DKTIILSTHIMQE--------VEAICDRVIIINKGKI 210 (301)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999765 5555667777777764 3 6999999999866 8999999999998775
No 133
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.13 E-value=4.6e-10 Score=111.31 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=49.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++. +|.|+.|++++
T Consensus 159 ~p~illlDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~--------~~~-~d~v~~l~~G~ 218 (221)
T TIGR02211 159 QPSLVLADEPTGNL---------DNNNAKIIFDLMLELNRELNTSFLVVTHDLEL--------AKK-LDRVLEMKDGQ 218 (221)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------Hhh-cCEEEEEeCCE
Confidence 59999999999765 55566778888888887778999999998754 655 79999998765
No 134
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=122.10 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=95.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHH-HH----------------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVE-QI---------------------- 255 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~-qi---------------------- 255 (583)
-+.+|++..|.|+||+|||||+..+.+.+.++. .-+|+.+.+ ++. .+
T Consensus 26 ~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~------GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN 99 (501)
T COG3845 26 SVKKGEIHALLGENGAGKSTLMKILFGLYQPDS------GEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN 99 (501)
T ss_pred eecCCcEEEEeccCCCCHHHHHHHHhCcccCCc------ceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence 468999999999999999999999999998864 355555543 111 11
Q ss_pred ----------------------HHHHHhccccccccccCC-----cccHHHHHHHhcccCCCEEEEccchhhhhhcccCC
Q 007957 256 ----------------------GNRADRMMIATEELFLYS-----STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 256 ----------------------~~R~~rl~i~~~~i~i~~-----~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
..-.+++|++.+.-.... +...-+|+..+ ..+++++|+||+++++
T Consensus 100 iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL-yr~a~iLILDEPTaVL------- 171 (501)
T COG3845 100 IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL-YRGARLLILDEPTAVL------- 171 (501)
T ss_pred hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH-hcCCCEEEEcCCcccC-------
Confidence 111122222211100000 00011122222 2358999999999987
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.++.+++..|++++++ |++||+|+|-.++ +..+||++-+|.+++.
T Consensus 172 --TP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~E--------v~~iaDrvTVLR~Gkv 218 (501)
T COG3845 172 --TPQEADELFEILRRLAAE-GKTIIFITHKLKE--------VMAIADRVTVLRRGKV 218 (501)
T ss_pred --CHHHHHHHHHHHHHHHHC-CCEEEEEeccHHH--------HHHhhCeeEEEeCCeE
Confidence 677899999999988776 9999999999987 8999999999998863
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=2.7e-10 Score=118.15 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=53.5
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |.....++...|.+++++.|.|||+++|.... +..+||+|+.|++++.
T Consensus 162 ~~P~llllDEPt~~L---------D~~~~~~l~~~L~~l~~~~g~tviiitHd~~~--------~~~~~drv~~l~~G~i 224 (290)
T PRK13634 162 MEPEVLVLDEPTAGL---------DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED--------AARYADQIVVMHKGTV 224 (290)
T ss_pred cCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999765 56667788888888888889999999999865 7889999999998764
No 136
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.13 E-value=2.7e-10 Score=109.87 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=88.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH--HHHHHHHhccccccc---cccCCcccH-
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE--QIGNRADRMMIATEE---LFLYSSTDI- 277 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~--qi~~R~~rl~i~~~~---i~i~~~~~~- 277 (583)
+.+|++++|.|+||+|||||+..+++..... . .-+++.++.... ....+...+++..++ ..++...++
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-----~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~ 96 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPA-----S-GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVA 96 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----C-ceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHH
Confidence 5789999999999999999999999987654 2 234555543211 001111223332222 111111111
Q ss_pred HHH---------------HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 278 EDI---------------VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 278 e~i---------------~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
+.+ +...-..+|+++++||+++.+ |......+...|.++.++ +.++|+++|....
T Consensus 97 e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~ 166 (182)
T cd03215 97 ENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGV---------DVGAKAEIYRLIRELADA-GKAVLLISSELDE 166 (182)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence 111 122223479999999998765 555666777777777654 8999999998754
Q ss_pred cCcCCccchheeccEEEEEeCce
Q 007957 343 GDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 343 g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+..+||.++.|+.++
T Consensus 167 --------~~~~~d~v~~l~~G~ 181 (182)
T cd03215 167 --------LLGLCDRILVMYEGR 181 (182)
T ss_pred --------HHHhCCEEEEecCCc
Confidence 888999999998653
No 137
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.13 E-value=2.9e-10 Score=112.73 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=48.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.++.|+.++.
T Consensus 151 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------~~~~~d~i~~l~~g~i 210 (220)
T cd03263 151 GPSVLLLDEPTSGL---------DPASRRAIWDLILEVRK--GRSIILTTHSMDE--------AEALCDRIAIMSDGKL 210 (220)
T ss_pred CCCEEEECCCCCCC---------CHHHHHHHHHHHHHHhc--CCEEEEEcCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999765 55566677777777765 4899999998754 7889999999987763
No 138
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.13 E-value=4.2e-10 Score=109.77 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=88.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH--hhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHH--
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII--ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED-- 279 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l--a~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~-- 279 (583)
+.+|++++|.|++|+|||||+..+++.. ... .+ -++++++..... .....+++..++..++...++.+
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-----~G-~i~~~g~~~~~~--~~~~~i~~~~q~~~~~~~~t~~~~i 103 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-----SG-EVLINGRPLDKR--SFRKIIGYVPQDDILHPTLTVRETL 103 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-----ce-EEEECCEeCchH--hhhheEEEccCcccCCCCCcHHHHH
Confidence 5789999999999999999999999987 543 22 345555543221 11122333222222222111111
Q ss_pred -----------------HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 280 -----------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 280 -----------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
.+...-..+|+++++||+++.+ |......+...|.++.++ +.++|+++|....
T Consensus 104 ~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~ 173 (194)
T cd03213 104 MFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGL---------DSSSALQVMSLLRRLADT-GRTIICSIHQPSS 173 (194)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHhC-CCEEEEEecCchH
Confidence 1111122479999999998765 455556667777777554 8999999998641
Q ss_pred cCcCCccchheeccEEEEEeCcee
Q 007957 343 GDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 343 g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+..++|.++.|+.++.
T Consensus 174 -------~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 174 -------EIFELFDKLLLLSQGRV 190 (194)
T ss_pred -------HHHHhcCEEEEEeCCEE
Confidence 26778999999987653
No 139
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=3.1e-10 Score=117.22 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=52.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+...|.+++++.|.|||+++|.... +..+||++++|+.++.
T Consensus 159 ~p~lLilDEPt~gL---------D~~~~~~l~~~l~~l~~~~g~tillvsH~~~~--------~~~~~dri~~l~~G~i 220 (283)
T PRK13636 159 EPKVLVLDEPTAGL---------DPMGVSEIMKLLVEMQKELGLTIIIATHDIDI--------VPLYCDNVFVMKEGRV 220 (283)
T ss_pred CCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 56667778888888888779999999999865 7889999999988764
No 140
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.12 E-value=4.9e-10 Score=107.66 Aligned_cols=137 Identities=16% Similarity=0.279 Sum_probs=88.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcc--------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSST-------- 275 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~-------- 275 (583)
+.+|++++|.|++|+|||||+..+++..... .+ .+++.++........+...+++..++..++..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-----QG-EITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCC-----CC-EEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 5789999999999999999999999987654 22 345666532221111112333333322222211
Q ss_pred ----cHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccc
Q 007957 276 ----DIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350 (583)
Q Consensus 276 ----~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~ 350 (583)
...+ .+...--.+|+++++||+++.+ |......+...|.+++ + +.+||+++|....
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-------- 159 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGL---------DPITERQLLSLIFEVL-K-DKTLIWITHHLTG-------- 159 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccC---------CHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH--------
Confidence 1111 1122223579999999998765 4555666777777764 3 7899999998754
Q ss_pred hheeccEEEEEeCcee
Q 007957 351 LEHIVDAVLYMEGEKF 366 (583)
Q Consensus 351 Le~~aD~Vl~Le~~~~ 366 (583)
++ .+|+++.|+.++.
T Consensus 160 ~~-~~d~~~~l~~g~i 174 (178)
T cd03247 160 IE-HMDKILFLENGKI 174 (178)
T ss_pred HH-hCCEEEEEECCEE
Confidence 66 5999999987653
No 141
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=3.2e-10 Score=116.30 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.+++|+.++.
T Consensus 178 ~p~illLDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~--------~~~~~d~v~~l~~G~i 239 (269)
T cd03294 178 DPDILLMDEAFSAL---------DPLIRREMQDELLRLQAELQKTIVFITHDLDE--------ALRLGDRIAIMKDGRL 239 (269)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999865 55666778888888887778999999998754 7889999999987764
No 142
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.12 E-value=4.5e-10 Score=110.66 Aligned_cols=60 Identities=15% Similarity=0.341 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... ++.+||.+++|++++
T Consensus 153 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~--------~~~~~d~i~~l~~g~ 212 (213)
T cd03262 153 NPKVMLFDEPTSAL---------DPELVGEVLDVMKDLAE-EGMTMVVVTHEMGF--------AREVADRVIFMDDGR 212 (213)
T ss_pred CCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------HHHhCCEEEEEeCCc
Confidence 59999999998765 55566777778887776 48999999998755 888999999998654
No 143
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=2.7e-10 Score=117.47 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=50.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.|||+++|.... ++. ||.++.|+.++.
T Consensus 158 ~p~lllLDEPt~gL---------D~~~~~~l~~~l~~l~~~~~~tilivsH~~~~--------~~~-~d~i~~l~~G~i 218 (279)
T PRK13635 158 QPDIIILDEATSML---------DPRGRREVLETVRQLKEQKGITVLSITHDLDE--------AAQ-ADRVIVMNKGEI 218 (279)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 59999999999865 55667778888888888889999999999854 664 999999998764
No 144
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.11 E-value=4.1e-10 Score=115.46 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|+.++.
T Consensus 161 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~--------~~~~~d~v~~l~~G~i 222 (269)
T PRK11831 161 EPDLIMFDEPFVGQ---------DPITMGVLVKLISELNSALGVTCVVVSHDVPE--------VLSIADHAYIVADKKI 222 (269)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH--------HHHhhCEEEEEECCEE
Confidence 59999999998765 55667778888888887778999999998754 7889999999987764
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.11 E-value=5e-10 Score=111.71 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++. +|.++.|++++.
T Consensus 164 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~-~d~i~~l~~g~i 224 (228)
T PRK10584 164 RPDVLFADEPTGNL---------DRQTGDKIADLLFSLNREHGTTLILVTHDLQL--------AAR-CDRRLRLVNGQL 224 (228)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHh-CCEEEEEECCEE
Confidence 59999999999765 55666778888888888779999999999754 665 999999987653
No 146
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2.8e-10 Score=114.71 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=51.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.|.+||+++|.... +..+||+++.|+.++.
T Consensus 148 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 148 NNPEVLLLDEPTSAL---------DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ--------AKRIGDYTAFLNKGIL 210 (241)
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH--------HHHhCCEEEEEeCCEE
Confidence 369999999999765 45556677788888877779999999999855 7889999999997763
No 147
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=4.2e-10 Score=110.46 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=85.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHh---hhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCccc----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIA---DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD---- 276 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la---~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~---- 276 (583)
+.+|++++|.|+||+|||||+..+++... .. ...+++.+......-..+...+++...+..++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~------~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 103 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV------EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRET 103 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc------ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHH
Confidence 57899999999999999999999999876 32 123444443221110111112222221111111111
Q ss_pred --------------------HHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 007957 277 --------------------IED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335 (583)
Q Consensus 277 --------------------~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIl 335 (583)
..+ .+...--.+|+++++||+++.+ |......+...|.+++++.+.++|+
T Consensus 104 l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~~~~~t~ii 174 (202)
T cd03233 104 LDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGL---------DSSTALEILKCIRTMADVLKTTTFV 174 (202)
T ss_pred HhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111 1111222369999999998765 5556677888888887776777666
Q ss_pred ec-ccCCccCcCCccchheeccEEEEEeCcee
Q 007957 336 AG-HVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 336 is-H~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++ |...+ +...||.++.|+.++.
T Consensus 175 ~~~h~~~~--------~~~~~d~i~~l~~G~i 198 (202)
T cd03233 175 SLYQASDE--------IYDLFDKVLVLYEGRQ 198 (202)
T ss_pred EEcCCHHH--------HHHhCCeEEEEECCEE
Confidence 54 54333 7789999999998763
No 148
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.11 E-value=3e-10 Score=113.54 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=49.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +..+||+++.|++++.
T Consensus 151 ~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 211 (232)
T cd03218 151 NPKFLLLDEPFAGV---------DPIAVQDIQKIIKILKD-RGIGVLITDHNVRE--------TLSITDRAYIIYEGKV 211 (232)
T ss_pred CCCEEEecCCcccC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH--------HHHhCCEEEEEECCeE
Confidence 59999999999865 45556677777777765 48999999998754 8899999999987764
No 149
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=4.7e-10 Score=118.31 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|++||+||+++.+ |.....+++..|.++.++.|.++|+++|.... +.++||.|++|+.++.
T Consensus 172 ~P~lLilDEPts~L---------D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~--------~~~~adrv~vm~~G~i 233 (327)
T PRK11308 172 DPDVVVADEPVSAL---------DVSVQAQVLNLMMDLQQELGLSYVFISHDLSV--------VEHIADEVMVMYLGRC 233 (327)
T ss_pred CCCEEEEECCCccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 56667788888888888889999999999854 8889999999998765
No 150
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=4.9e-10 Score=110.75 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++.+||.+++|++++.
T Consensus 149 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 210 (214)
T cd03297 149 QPELLLLDEPFSAL---------DRALRLQLLPELKQIKKNLNIPVIFVTHDLSE--------AEYLADRIVVMEDGRL 210 (214)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999865 55667778888888888779999999999855 7889999999987653
No 151
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=3.7e-10 Score=116.91 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=52.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |.....++...|.+++++.+.|||+++|.... +..+||+|+.|+.++.
T Consensus 162 ~P~llllDEPt~gL---------D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~--------~~~~~drv~~l~~G~i 223 (287)
T PRK13637 162 EPKILILDEPTAGL---------DPKGRDEILNKIKELHKEYNMTIILVSHSMED--------VAKLADRIIVMNKGKC 223 (287)
T ss_pred CCCEEEEECCccCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 55667778888888888779999999999755 7789999999998764
No 152
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=2.4e-10 Score=121.78 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=52.6
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++-+ |.....++...|+++.++.++|+|+++|...+ +..+||.+++|+.++.
T Consensus 151 ~~P~llLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e--------a~~l~D~i~vl~~G~i 213 (356)
T PRK11650 151 REPAVFLFDEPLSNL---------DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE--------AMTLADRVVVMNGGVA 213 (356)
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEeCCEE
Confidence 369999999998765 55556677778888888889999999998865 8889999999998765
No 153
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.10 E-value=4.5e-10 Score=113.76 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=94.2
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC--CCccEEEEeCcc------CHHHHHHH---------------
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG--EPSPVVYVSGEE------SVEQIGNR--------------- 258 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~--~~~~VLyis~Ee------s~~qi~~R--------------- 258 (583)
|=+.+|++++|.|+||+|||||+..+++.+....+.. .+..+.|+..+. +..+....
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 4578999999999999999999999999876653310 122455554321 22221110
Q ss_pred HHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEE
Q 007957 259 ADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334 (583)
Q Consensus 259 ~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVI 334 (583)
++.+++.. ..+.-++.....+ .+...-..+|+++++||+++.+ |......+...|.+++++.+.+||
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii 170 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL---------DVEQRLMASKVIRRFAENNEKTAF 170 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEE
Confidence 01111110 0000111111222 1222334579999999999865 666677888888888888899999
Q ss_pred EecccCCccCcCCccchheeccEEEEEeCce
Q 007957 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 335 lisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+++|.... +..+||.++.|++..
T Consensus 171 ivsHd~~~--------~~~~~d~i~~l~~~~ 193 (246)
T cd03237 171 VVEHDIIM--------IDYLADRLIVFEGEP 193 (246)
T ss_pred EEeCCHHH--------HHHhCCEEEEEcCCC
Confidence 99999855 888999999997643
No 154
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.10 E-value=3.7e-10 Score=112.74 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=51.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|+.++.
T Consensus 149 ~p~illlDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 149 RPKLLLLDEPTEGI---------QPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF--------ARELADRYYVMERGRV 210 (230)
T ss_pred CCCEEEecCCcccC---------CHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55566677778888777678999999999865 8889999999987764
No 155
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.09 E-value=5.7e-10 Score=113.79 Aligned_cols=146 Identities=19% Similarity=0.196 Sum_probs=88.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----CC-----CccEEEEeCcc------CHH-HH------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----GE-----PSPVVYVSGEE------SVE-QI------------ 255 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~~-----~~~VLyis~Ee------s~~-qi------------ 255 (583)
+.+|++++|.|+||+|||||+..+++.+....+. +. ...+.|+.-+. +.. .+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 114 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA 114 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence 5789999999999999999999999987654220 00 01133332221 000 00
Q ss_pred HHHHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCC
Q 007957 256 GNRADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNI 331 (583)
Q Consensus 256 ~~R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~ 331 (583)
...++.+++.. ....-++.....+ .+...-..+|+++++||+++.+ |......+...|.+++++.+.
T Consensus 115 ~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 115 LQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL---------DALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHHcCC
Confidence 00011111110 0000011111111 1111222369999999998765 555667778888888777799
Q ss_pred cEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 332 PVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 332 tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+||+++|.... +..+||.|+.|++++.
T Consensus 186 tviivsHd~~~--------~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 186 TVLLVTHDVSE--------AVAMADRVLLIEEGKI 212 (257)
T ss_pred EEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 99999999754 7889999999988764
No 156
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.09 E-value=4.1e-10 Score=112.03 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++..||.++.|++++.
T Consensus 163 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 224 (228)
T cd03257 163 NPKLLIADEPTSAL---------DVSVQAQILDLLKKLQEELGLTLLFITHDLGV--------VAKIADRVAVMYAGKI 224 (228)
T ss_pred CCCEEEecCCCCCC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhcCeEEEEeCCEE
Confidence 59999999999765 55566778888888887778999999998754 7889999999987763
No 157
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=7e-10 Score=109.95 Aligned_cols=139 Identities=26% Similarity=0.349 Sum_probs=97.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc---------------CHHHHHHHHHhccccccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE---------------SVEQIGNRADRMMIATEE 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee---------------s~~qi~~R~~rl~i~~~~ 268 (583)
+.+|+.++|.|.||+|||||++.+++.+.+..+ -+.+.+.- ..+.+..++.-+|+....
T Consensus 50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G------~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~e 123 (249)
T COG1134 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG------KVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKE 123 (249)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc------eEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHH
Confidence 578999999999999999999999999988643 22233221 123455555555543322
Q ss_pred cc---------------------cCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 007957 269 LF---------------------LYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA 326 (583)
Q Consensus 269 i~---------------------i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA 326 (583)
+. .++..-..+ ........+|++++|||+-+. ||..-.+.+...+.++.
T Consensus 124 i~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav---------GD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 124 IDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV---------GDAAFQEKCLERLNELV 194 (249)
T ss_pred HHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc---------CCHHHHHHHHHHHHHHH
Confidence 11 111111111 222233457999999999754 57788889999999987
Q ss_pred HcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 327 KKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 327 k~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++ +.++|+++|.... +.++||++++|+++..
T Consensus 195 ~~-~~tiv~VSHd~~~--------I~~~Cd~~i~l~~G~i 225 (249)
T COG1134 195 EK-NKTIVLVSHDLGA--------IKQYCDRAIWLEHGQI 225 (249)
T ss_pred Hc-CCEEEEEECCHHH--------HHHhcCeeEEEeCCEE
Confidence 76 5999999999854 9999999999998874
No 158
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.09 E-value=9.8e-10 Score=109.93 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=52.2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..++|+++.|++++.
T Consensus 142 ~~p~vllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 204 (230)
T TIGR02770 142 LEPPFLIADEPTTDL---------DVVNQARVLKLLRELRQLFGTGILLITHDLGV--------VARIADEVAVMDDGRI 204 (230)
T ss_pred cCCCEEEEcCCcccc---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999765 55566677788888877778999999999755 8889999999988764
No 159
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=7.4e-10 Score=107.85 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=86.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH---
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI--- 280 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i--- 280 (583)
+.+|++++|.|+||+|||||+..+++...... ...-++++++.....+ ...+++..+...++...++.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~----~~G~i~~~g~~~~~~~---~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGV----ITGEILINGRPLDKNF---QRSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC----cceEEEECCEehHHHh---hhceEEecccCccccCCcHHHHHHH
Confidence 57899999999999999999999998642100 1234556655432111 1223332222122221111111
Q ss_pred ----------------HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccC
Q 007957 281 ----------------VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344 (583)
Q Consensus 281 ----------------~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~ 344 (583)
+...-..+|+++++||+++.+ |......+...|.++++ .+.++|+++|....
T Consensus 103 ~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~L---------D~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~-- 170 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGL---------DSQAAYNIVRFLKKLAD-SGQAILCTIHQPSA-- 170 (192)
T ss_pred HHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC---------CHHHHHHHHHHHHHHHH-cCCEEEEEEcCChH--
Confidence 111222369999999998765 55566777777887765 48999999998741
Q ss_pred cCCccchheeccEEEEEeC-ce
Q 007957 345 IAGPRVLEHIVDAVLYMEG-EK 365 (583)
Q Consensus 345 ~ag~~~Le~~aD~Vl~Le~-~~ 365 (583)
.+...||.++.|++ ++
T Consensus 171 -----~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 171 -----SIFEKFDRLLLLKRGGK 187 (192)
T ss_pred -----HHHhhCCEEEEEcCCCe
Confidence 15678999999986 54
No 160
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=5.3e-10 Score=115.73 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.++.|.|||+++|.... +..+||+|+.|+.++.
T Consensus 163 ~p~illlDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~--------~~~~~dri~~l~~G~i 224 (286)
T PRK13646 163 NPDIIVLDEPTAGL---------DPQSKRQVMRLLKSLQTDENKTIILVSHDMNE--------VARYADEVIVMKEGSI 224 (286)
T ss_pred CCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 55666777788888877779999999999754 7788999999998764
No 161
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=4.2e-10 Score=113.42 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=52.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.|+.|++++.
T Consensus 152 ~~p~llllDEPt~~L---------D~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~--------~~~~~d~i~~l~~G~i 214 (242)
T cd03295 152 ADPPLLLMDEPFGAL---------DPITRDQLQEEFKRLQQELGKTIVFVTHDIDE--------AFRLADRIAIMKNGEI 214 (242)
T ss_pred cCCCEEEecCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999998765 55566777888888887778999999998754 7889999999998764
No 162
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.09 E-value=4.3e-10 Score=111.53 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=49.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +..+||.++.|+.++.
T Consensus 150 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 210 (222)
T cd03224 150 RPKLLLLDEPSEGL---------APKIVEEIFEAIRELRD-EGVTILLVEQNARF--------ALEIADRAYVLERGRV 210 (222)
T ss_pred CCCEEEECCCcccC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH--------HHHhccEEEEeeCCeE
Confidence 59999999998765 45556677777777765 58999999998754 7889999999987653
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.09 E-value=4.2e-10 Score=111.19 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=52.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++.++.+.+||+++|.... +..+||.++.|++++.
T Consensus 145 ~~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~--------~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 145 RPNPILLLDEPFSAL---------DPLLREEMLALVKQLCSERQRTLLMVTHHLSD--------ARAIASQIAVVSQGKI 207 (213)
T ss_pred cCCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHhhcCeEEEEECCeE
Confidence 369999999999865 55566777888888877779999999999855 7889999999987664
No 164
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.09 E-value=4.5e-10 Score=110.07 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=87.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH--hhhcCCCCCccEEEEeCccCHH-HHHHHH-HhccccccccccCCcccHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII--ADVHDLGEPSPVVYVSGEESVE-QIGNRA-DRMMIATEELFLYSSTDIED 279 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l--a~~~~~~~~~~VLyis~Ees~~-qi~~R~-~rl~i~~~~i~i~~~~~~e~ 279 (583)
+.+|++++|.|+||+|||||+..+++.. ... .+ -++++++.... ....+. .++++..+...++......+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-----~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~ 96 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-----EG-EILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNAD 96 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-----cc-EEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHH
Confidence 4789999999999999999999999874 222 22 35555543211 011111 12333222222222222222
Q ss_pred HH-----------------HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 280 IV-----------------EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 280 i~-----------------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
++ ...--.+|+++++|++++.+ |.....++...|.++++ .+.+||+++|....
T Consensus 97 ~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L---------D~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~ 166 (200)
T cd03217 97 FLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGL---------DIDALRLVAEVINKLRE-EGKSVLIITHYQRL 166 (200)
T ss_pred HHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHH-CCCEEEEEecCHHH
Confidence 11 11223479999999998765 45556677788888765 48999999998744
Q ss_pred cCcCCccchhe-eccEEEEEeCcee
Q 007957 343 GDIAGPRVLEH-IVDAVLYMEGEKF 366 (583)
Q Consensus 343 g~~ag~~~Le~-~aD~Vl~Le~~~~ 366 (583)
+++ ++|.++.|+.++.
T Consensus 167 --------~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 167 --------LDYIKPDRVHVLYDGRI 183 (200)
T ss_pred --------HHHhhCCEEEEEECCEE
Confidence 677 7999999987653
No 165
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=5.4e-10 Score=113.34 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 171 ~p~llllDEPt~~L---------D~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~--------~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 171 QPEILMLDEPAAGL---------NPKETKELDELIAELRNEHNVTVLLIEHDMKL--------VMGISDRIYVVNQGTP 232 (255)
T ss_pred CCCEEEEcCCccCC---------CHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCeE
Confidence 59999999999865 55566777788888877779999999998855 7889999999987763
No 166
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=2.8e-10 Score=114.44 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=51.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 153 ~~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~--------~~~~~d~i~~l~~G~i 215 (239)
T cd03296 153 VEPKVLLLDEPFGAL---------DAKVRKELRRWLRRLHDELHVTTVFVTHDQEE--------ALEVADRVVVMNKGRI 215 (239)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhCCEEEEEECCeE
Confidence 369999999999865 55566777888888887778999999998754 7889999999987653
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.09 E-value=8.9e-10 Score=112.39 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 170 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~--------~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 170 QAKVILADEPIASL---------DPESARIVMDTLRDINQNDGITVVVTLHQVDY--------ALRYCERIVALRQGHV 231 (262)
T ss_pred CCCEEEecCccccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 49999999999865 56667788888888887778999999999855 7889999999987753
No 168
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=99.08 E-value=1.8e-09 Score=112.84 Aligned_cols=182 Identities=21% Similarity=0.308 Sum_probs=122.8
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh--ccccccc--------cc----
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR--MMIATEE--------LF---- 270 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r--l~i~~~~--------i~---- 270 (583)
..|+..+|-|.||+|||||++.++..+.. .++|+|+|.--+.+.+.+..-. -.++..+ +.
T Consensus 8 ~~G~TLLIKG~PGTGKTtfaLelL~~l~~------~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~~~ 81 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKTTFALELLNSLKD------HGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELPLD 81 (484)
T ss_pred CCCcEEEEecCCCCCceeeehhhHHHHhc------cCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhcccc
Confidence 56999999999999999999999999886 4679999998777766544311 0111100 00
Q ss_pred ----c--CCcccHHHHHHHhcc-cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc
Q 007957 271 ----L--YSSTDIEDIVEKVQP-LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343 (583)
Q Consensus 271 ----i--~~~~~~e~i~~~i~~-~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g 343 (583)
+ +..+.+.++++.+.. .+..+|++||+.+++.. ....-+....+..+.+.|..+|++.|+-+|+++...+.
T Consensus 82 ~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiiey-la~~~~~~ed~e~l~~dLv~lard~g~~LIlVsEsa~~- 159 (484)
T PF07088_consen 82 KDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEY-LAEEHDEPEDIETLTNDLVELARDMGINLILVSESAEN- 159 (484)
T ss_pred ccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHH-hhhhhcCcHHHHHHHHHHHHHHhhcCceEEEEEecCCC-
Confidence 0 111223344444432 45679999998877642 11122344456778889999999999999999877654
Q ss_pred CcCCccchheeccEEEEEeCce---eceeeeEEEEecccCCccc-cceeecccCCeEEec
Q 007957 344 DIAGPRVLEHIVDAVLYMEGEK---FSSYRLLRSVKNRFGSTDE-LGVFEMSQLGLQAVS 399 (583)
Q Consensus 344 ~~ag~~~Le~~aD~Vl~Le~~~---~~~~R~L~i~KnR~g~~~e-i~~f~It~~GL~~v~ 399 (583)
..|+++||.|+.|.-.. ....|.|+.-|-|.-..+. ...|...+.-+..+.
T Consensus 160 -----~~LdYivDGVVTL~v~~derGR~~R~L~LeKLRGV~I~q~~Y~fTL~nGrF~~f~ 214 (484)
T PF07088_consen 160 -----EPLDYIVDGVVTLQVKNDERGRTRRYLRLEKLRGVRIKQRLYPFTLANGRFRSFT 214 (484)
T ss_pred -----CcchheeeeEEEEEeccccCCceEEEEEehhhcCcccCCccceEEeeCCEEEEec
Confidence 56999999999996222 2456889999999766654 455665554444333
No 169
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=4.1e-10 Score=105.86 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=89.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHH-HHHHHHhccccccccccCCcccHHHH-H
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ-IGNRADRMMIATEELFLYSSTDIEDI-V 281 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~q-i~~R~~rl~i~~~~i~i~~~~~~e~i-~ 281 (583)
+.+|++++|.|++|+|||||+..+++.+... ..-+++.++..... ...+...+++..+ ++.....++ +
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~------~G~i~~~~~~~~~~~~~~~~~~i~~~~q----lS~G~~~r~~l 91 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPT------SGEILIDGKDIAKLPLEELRRRIGYVPQ----LSGGQRQRVAL 91 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------ccEEEECCEEcccCCHHHHHhceEEEee----CCHHHHHHHHH
Confidence 4789999999999999999999999877543 23456766532211 1111122222211 333332322 2
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
...-..+|+++++||+++.+ |......+.+.|.++.+. +.++++++|.... ++..||.++.|
T Consensus 92 ~~~l~~~~~i~ilDEp~~~l---------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~--------~~~~~d~i~~l 153 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGL---------DPASRERLLELLRELAEE-GRTVIIVTHDPEL--------AELAADRVIVL 153 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEE
Confidence 22233479999999998765 455566777777777665 7899999999865 88889999999
Q ss_pred eCc
Q 007957 362 EGE 364 (583)
Q Consensus 362 e~~ 364 (583)
.++
T Consensus 154 ~~g 156 (157)
T cd00267 154 KDG 156 (157)
T ss_pred eCc
Confidence 753
No 170
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=3.8e-10 Score=120.18 Aligned_cols=63 Identities=27% Similarity=0.424 Sum_probs=52.6
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.++|+++|...+ +..+||.++.|++++.
T Consensus 145 ~~p~llLLDEPts~L---------D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~--------~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 145 TAPELLLMDEPLASL---------DLPRKRELLPYLERLAREINIPILYVSHSLDE--------ILRLADRVVVLEQGKV 207 (352)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH--------HHHhCCEEEEEeCCEE
Confidence 359999999998765 55556677788888888889999999999855 8899999999988764
No 171
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.08 E-value=3.8e-10 Score=115.59 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=52.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 166 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tviivsH~~~~--------~~~~~d~i~~l~~G~i 228 (267)
T PRK15112 166 LRPKVIIADEALASL---------DMSMRSQLINLMLELQEKQGISYIYVTQHLGM--------MKHISDQVLVMHQGEV 228 (267)
T ss_pred hCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 369999999999865 55566777888888888779999999998755 8889999999987663
No 172
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.08 E-value=5.4e-10 Score=113.86 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=51.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.|++|++++.
T Consensus 157 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 157 GPPRWLLLDEPTSAL---------DLAHQHHVLRLARQLAHERGLAVIVVLHDLNL--------AARYADRIVLLHQGRL 219 (258)
T ss_pred CCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------HHHhcCEEEEEECCEE
Confidence 479999999999865 55556677788888875678999999998755 7889999999987764
No 173
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.08 E-value=3.3e-10 Score=120.93 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=52.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT-NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~-g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |.....++...|.++.++. |+|+|+++|...+ +..++|+|++|+.++
T Consensus 154 ~~P~llLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e--------a~~l~dri~vl~~G~ 216 (362)
T TIGR03258 154 IEPDVLLLDEPLSAL---------DANIRANMREEIAALHEELPELTILCVTHDQDD--------ALTLADKAGIMKDGR 216 (362)
T ss_pred cCCCEEEEcCccccC---------CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH--------HHHhCCEEEEEECCE
Confidence 359999999998765 5555667777788888887 8999999999865 788999999999876
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 217 i 217 (362)
T TIGR03258 217 L 217 (362)
T ss_pred E
Confidence 5
No 174
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.4e-10 Score=114.39 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=57.1
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
..+|++||-||+++.+ |.....++++.|+++.++.|.++|+|+|.. +.+..+||+|.+|+.++
T Consensus 169 a~~P~LlIADEPTTAL---------Dvt~QaqIl~Ll~~l~~e~~~aiilITHDl--------~vva~~aDri~VMYaG~ 231 (316)
T COG0444 169 ALNPKLLIADEPTTAL---------DVTVQAQILDLLKELQREKGTALILITHDL--------GVVAEIADRVAVMYAGR 231 (316)
T ss_pred hCCCCEEEeCCCcchh---------hHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--------HHHHHhcceEEEEECcE
Confidence 3469999999999976 666678899999999999999999999998 45999999999999887
Q ss_pred ece
Q 007957 366 FSS 368 (583)
Q Consensus 366 ~~~ 368 (583)
.-+
T Consensus 232 iVE 234 (316)
T COG0444 232 IVE 234 (316)
T ss_pred EEE
Confidence 643
No 175
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=5.1e-10 Score=115.39 Aligned_cols=136 Identities=16% Similarity=0.273 Sum_probs=88.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhccccccc-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATEE----------- 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~~----------- 268 (583)
+.+|++++|.|+||+|||||+..+++.+.... ..+++.++.. ...+. ..+++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~------G~i~~~g~~i~~~~~~~~~---~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES------GQIIIDGDLLTEENVWDIR---HKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------cEEEECCEECCcCcHHHHH---hhceEEEcChHHhcccccHH
Confidence 57899999999999999999999999876642 2344544321 11111 122211111
Q ss_pred --ccc------CCccc----HHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCC
Q 007957 269 --LFL------YSSTD----IEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 269 --i~i------~~~~~----~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
+.+ .+... .+++++. .-..+|+++++||+++.+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~L--------- 171 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML--------- 171 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccC---------
Confidence 100 00000 1111111 112259999999999865
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.+++++.|.|||+++|.... ++ .||+++.|+.++.
T Consensus 172 D~~~~~~l~~~l~~l~~~~g~tilivtH~~~~--------~~-~~dri~~l~~G~i 218 (279)
T PRK13650 172 DPEGRLELIKTIKGIRDDYQMTVISITHDLDE--------VA-LSDRVLVMKNGQV 218 (279)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HH-hCCEEEEEECCEE
Confidence 56667788888888888789999999999754 64 6999999988764
No 176
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=4.2e-10 Score=115.76 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=50.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++...|.+++++ |.|||+++|.... +..+||+++.|++++.
T Consensus 156 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tili~tH~~~~--------~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 156 DPDVIVLDEPMAYL---------DPRGQETLMEILDRLHNQ-GKTVIVATHDVDL--------AAEWADQVIVLKEGRV 216 (274)
T ss_pred CCCEEEEECCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 556667777888888765 9999999999854 7789999999988764
No 177
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.08 E-value=3.4e-10 Score=122.24 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=51.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++...|.++++ .+.|||+++|.... +.++||+++.|++++.
T Consensus 157 ~P~iLLLDEPtsgL---------D~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~--------~~~~adrii~l~~G~i 217 (402)
T PRK09536 157 ATPVLLLDEPTASL---------DINHQVRTLELVRRLVD-DGKTAVAAIHDLDL--------AARYCDELVLLADGRV 217 (402)
T ss_pred CCCEEEEECCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999866 55566677888888876 58999999999865 8899999999998764
No 178
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.08 E-value=5.3e-10 Score=111.95 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=53.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.|+.|++++.
T Consensus 131 ~~p~lllLDEPt~gL---------D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 131 IRPKVLLLDEPFGAL---------DALTRGNLQEELMQIWEEHRVTVLMVTHDVDE--------ALLLSDRVVMLTNGPA 193 (230)
T ss_pred cCCCEEEEcCCCcCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhcCEEEEEeCCcE
Confidence 469999999999865 56667788888888888789999999998754 8889999999998764
No 179
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=4e-10 Score=112.87 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=51.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++|++++.+ |......+...|.+++++.+.+||+++|.... +..+||+++.|+.++.
T Consensus 147 ~~p~llllDEP~~gL---------D~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~--------~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 147 NEPKVLLLDEPLGAL---------DLKLRKDMQLELKRLQKELGITFVFVTHDQEE--------ALTMSDRIAVMNKGKI 209 (232)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 369999999998765 55566677778888877779999999999855 7889999999987764
No 180
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=5.1e-10 Score=115.27 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+|+++..+ |......+...|.+++++.+.|||+++|.... +..+||+++.|+.++.
T Consensus 155 ~p~llilDEPt~gL---------D~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~--------~~~~~drv~~l~~G~i 216 (277)
T PRK13652 155 EPQVLVLDEPTAGL---------DPQGVKELIDFLNDLPETYGMTVIFSTHQLDL--------VPEMADYIYVMDKGRI 216 (277)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHHhCCEEEEEECCeE
Confidence 59999999998765 55556677788888877779999999999865 7889999999988764
No 181
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.07 E-value=4.5e-10 Score=112.55 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++++ .+.+||+++|.... +..+||.++.|+.++.
T Consensus 161 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~--------~~~~~d~i~~l~~G~i 221 (236)
T cd03219 161 DPKLLLLDEPAAGL---------NPEETEELAELIRELRE-RGITVLLVEHDMDV--------VMSLADRVTVLDQGRV 221 (236)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHH-CCCEEEEEecCHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999865 55566777888888776 58999999998755 8889999999987763
No 182
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.07 E-value=8.3e-10 Score=111.91 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.++|+++|.... +..++|+++.|+.++.
T Consensus 164 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 164 RPKVMLFDEVTSAL---------DPELVGEVLNVIRRLASEHDLTMLLVTHEMGF--------AREFADRVCFFDKGRI 225 (252)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999998765 55556777888888888779999999998754 7789999999998764
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=6.6e-10 Score=119.95 Aligned_cols=140 Identities=18% Similarity=0.322 Sum_probs=90.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHH-HHHhccccccccccCC-----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGN-RADRMMIATEELFLYS----- 273 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~-R~~rl~i~~~~i~i~~----- 273 (583)
+.+|++++|.|+||+|||||++.+++.+.... ..+++.++. +..++.. +...+++..++..++.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s------G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~ 124 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR------GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVL 124 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCC------CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHH
Confidence 58899999999999999999999999876642 234455432 1222211 1112222111111000
Q ss_pred -------------ccc----HHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCC
Q 007957 274 -------------STD----IEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 274 -------------~~~----~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
... ..++++. .-..+|+++++||+++.+
T Consensus 125 enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L--------- 195 (400)
T PRK10070 125 DNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL--------- 195 (400)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC---------
Confidence 000 1111111 111259999999999765
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.++.++.+.|||+++|...+ +..+||.++.|+.++.
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~--------~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDE--------AMRIGDRIAIMQNGEV 243 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 55566777888888887789999999998755 7889999999998764
No 184
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.07 E-value=3.7e-10 Score=121.00 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=52.5
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|.++.++.+.|+|+++|...+ +..+||.+++|++++.
T Consensus 150 ~~P~lLLLDEPts~L---------D~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~--------~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 150 AEPSVFLLDEPLSNL---------DAALRVQMRIEISRLHKRLGRTMIYVTHDQVE--------AMTLADKIVVLDAGRV 212 (369)
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 469999999999865 55556677778888888889999999999855 7889999999998764
No 185
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=4.6e-10 Score=112.41 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.++|+++|.... +..+||.++.|.+++.
T Consensus 147 ~p~lllLDEP~~gL---------D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~--------~~~~~d~i~~l~~g~i 208 (232)
T PRK10771 147 EQPILLLDEPFSAL---------DPALRQEMLTLVSQVCQERQLTLLMVSHSLED--------AARIAPRSLVVADGRI 208 (232)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55566777888888888779999999999865 7889999999987664
No 186
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.07 E-value=6.9e-10 Score=109.54 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |......+.+.|.++++ .+.+||+++|.... ++.+||.++.|+++
T Consensus 150 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~--------~~~~~d~i~~l~~~ 208 (213)
T cd03235 150 DPDLLLLDEPFAGV---------DPKTQEDIYELLRELRR-EGMTILVVTHDLGL--------VLEYFDRVLLLNRT 208 (213)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHHhcCEEEEEcCc
Confidence 59999999999765 56667788888888876 58999999999865 88899999999753
No 187
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.07 E-value=4.1e-10 Score=119.91 Aligned_cols=62 Identities=11% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+.+.+ |.....++...|+++.++.++|+|+++|...+ +..+||.|+.|++++.
T Consensus 152 ~P~llLLDEP~s~L---------D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e--------a~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 152 SPGLLLLDEPLSAL---------DARVREHLRTEIRQLQRRLGVTTIMVTHDQEE--------ALSMADRIVVMNHGVI 213 (353)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55556677788888888889999999999865 7889999999998775
No 188
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.07 E-value=1e-09 Score=109.07 Aligned_cols=142 Identities=15% Similarity=0.290 Sum_probs=96.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH----HHHHHHH----Hhccccc-----cccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV----EQIGNRA----DRMMIAT-----EELF 270 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~----~qi~~R~----~rl~i~~-----~~i~ 270 (583)
++.|+++++.|++||||||+++.+-..+... ..-+++.+++.. ..++.++ +..++.+ +|+-
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiept------~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa 97 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPT------SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIA 97 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCCC------CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHH
Confidence 5889999999999999999999998887764 346788877533 2333332 2222211 2222
Q ss_pred cCCc---cc-------HHHHHHHh----------------------------cccCCCEEEEccchhhhhhcccCCCCCH
Q 007957 271 LYSS---TD-------IEDIVEKV----------------------------QPLSPRALIIDSIQTVYLRGVAGSAGGL 312 (583)
Q Consensus 271 i~~~---~~-------~e~i~~~i----------------------------~~~~p~lVVIDsi~~l~~~~~~~~~g~~ 312 (583)
+.+. .+ .+++++.+ -..+|.++++||++..+ |+
T Consensus 98 ~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgAL---------Dp 168 (309)
T COG1125 98 TVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL---------DP 168 (309)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCcccc---------Ch
Confidence 1110 01 11222211 11249999999998755 44
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceece
Q 007957 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368 (583)
Q Consensus 313 ~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~ 368 (583)
.....+...++++-++.+.||++++|...+ .-+++|+|..|..++...
T Consensus 169 I~R~~lQ~e~~~lq~~l~kTivfVTHDidE--------A~kLadri~vm~~G~i~Q 216 (309)
T COG1125 169 ITRKQLQEEIKELQKELGKTIVFVTHDIDE--------ALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEecCHHH--------HHhhhceEEEecCCeEEE
Confidence 445567778888999999999999999877 778999999999877543
No 189
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=7.3e-10 Score=114.81 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=49.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |....+.+...|.++++ .+.|||+++|.... +..+||+|+.|++++.
T Consensus 162 ~p~illLDEPt~gL---------D~~~~~~l~~~l~~l~~-~g~til~vtHd~~~--------~~~~~dri~~l~~G~i 222 (288)
T PRK13643 162 EPEVLVLDEPTAGL---------DPKARIEMMQLFESIHQ-SGQTVVLVTHLMDD--------VADYADYVYLLEKGHI 222 (288)
T ss_pred CCCEEEEECCccCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 45556677777777765 48999999999754 7788999999998764
No 190
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=6.6e-10 Score=113.64 Aligned_cols=62 Identities=13% Similarity=0.279 Sum_probs=52.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |....+.+...|.+++++.+.+||+++|.... ++.+||.++.|++++.
T Consensus 165 ~p~lllLDEPt~~L---------D~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~--------i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 165 DSRCLLLDEPTSAL---------DIAHQVDVLALVHRLSQERGLTVIAVLHDINM--------AARYCDYLVALRGGEM 226 (265)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCeE
Confidence 59999999999865 55666777888888887779999999998755 8889999999987663
No 191
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.06 E-value=9e-10 Score=110.78 Aligned_cols=61 Identities=10% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +..+||.++.|++++.
T Consensus 154 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 154 KPKLMLFDEPTSAL---------DPELRHEVLKVMQDLAE-EGMTMVIVTHEIGF--------AEKVASRLIFIDKGRI 214 (240)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999765 55556677777777765 48999999998755 7888999999987764
No 192
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.5e-09 Score=108.84 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=47.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.|.+||+++|.... ++.. |.++.|+.++.
T Consensus 163 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~--------~~~~-~~~~~l~~G~i 223 (233)
T PRK11629 163 NPRLVLADEPTGNL---------DARNADSIFQLLGELNRLQGTAFLVVTHDLQL--------AKRM-SRQLEMRDGRL 223 (233)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------HHhh-CEEEEEECCEE
Confidence 59999999999765 55556677777888777678999999998754 6664 68888887653
No 193
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.06 E-value=5.7e-10 Score=118.97 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.++|+++|...+ +..+||.+++|++++.
T Consensus 149 ~p~lllLDEPts~L---------D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~--------~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 149 SPRLLLMDEPLAAL---------DDPRKYEILPYLERLHAEFGIPILYVSHSLQE--------VLRLADRVVVLEDGRV 210 (354)
T ss_pred CCCEEEEcCCCcCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999865 55666778888888888789999999998755 7889999999998764
No 194
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.06 E-value=7.9e-10 Score=113.08 Aligned_cols=62 Identities=8% Similarity=0.093 Sum_probs=51.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||+++.|++++.
T Consensus 161 ~p~llllDEPt~gL---------D~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~--------~~~~~d~i~~l~~G~i 222 (265)
T PRK10253 161 ETAIMLLDEPTTWL---------DISHQIDLLELLSELNREKGYTLAAVLHDLNQ--------ACRYASHLIALREGKI 222 (265)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55566777888888887779999999999855 8899999999998764
No 195
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=5.1e-10 Score=119.04 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=52.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+.+.+ |.....++...|+++.++.++|+|+++|...+ +..+||.|++|++++.
T Consensus 153 ~~P~lLLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e--------~~~laD~i~vm~~G~i 215 (351)
T PRK11432 153 LKPKVLLFDEPLSNL---------DANLRRSMREKIRELQQQFNITSLYVTHDQSE--------AFAVSDTVIVMNKGKI 215 (351)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999998765 45556667778888888889999999999865 7789999999998765
No 196
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=9.8e-10 Score=113.04 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.++.|+.++.
T Consensus 155 ~p~llllDEPt~gL---------D~~~~~~l~~~l~~l~~~-~~til~vtH~~~~--------~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 155 KPEIIVLDEPTSGL---------DPMGASQIMKLLYDLNKE-GITIIISTHDVDL--------VPVYADKVYVMSDGKI 215 (275)
T ss_pred CCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998865 556667788888888765 9999999999855 7788999999987664
No 197
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.05 E-value=2e-09 Score=109.38 Aligned_cols=146 Identities=15% Similarity=0.171 Sum_probs=90.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhh----hcC----CCC--------CccEEEEeCccC--H-------HHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIAD----VHD----LGE--------PSPVVYVSGEES--V-------EQIGNR 258 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~----~~~----~~~--------~~~VLyis~Ees--~-------~qi~~R 258 (583)
+.+|++++|.|+||+|||||+..+++.... ..+ .+. ...+.|+..+.. . +.+...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~ 105 (254)
T PRK10418 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARET 105 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHH
Confidence 478999999999999999999999998765 322 010 123445443321 0 001000
Q ss_pred ----------------HHhccccc------cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHH
Q 007957 259 ----------------ADRMMIAT------EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQV 315 (583)
Q Consensus 259 ----------------~~rl~i~~------~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qv 315 (583)
++.+++.. ....-++.....+ .+...-..+|+++|+||+++.+ |....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~L---------D~~~~ 176 (254)
T PRK10418 106 CLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDL---------DVVAQ 176 (254)
T ss_pred HHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCccc---------CHHHH
Confidence 01111110 0000011111111 1122223479999999999765 55566
Q ss_pred HHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 316 KECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 316 rei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.+...|.+++++.+.+||+++|.... +..+||+++.|++++.
T Consensus 177 ~~l~~~L~~~~~~~g~til~~sH~~~~--------~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 177 ARILDLLESIVQKRALGMLLVTHDMGV--------VARLADDVAVMSHGRI 219 (254)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 778888888888779999999998755 7788999999988764
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.05 E-value=9.7e-10 Score=116.08 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |.....+++..|.++.++++.++|+++|.... +.++||.|++|+.++.
T Consensus 179 ~P~llilDEPts~L---------D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~--------~~~~~dri~vl~~G~i 240 (331)
T PRK15079 179 EPKLIICDEPVSAL---------DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV--------VKHISDRVLVMYLGHA 240 (331)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 55666788888888888889999999999854 7889999999998764
No 199
>PRK04296 thymidine kinase; Provisional
Probab=99.05 E-value=8.5e-10 Score=107.44 Aligned_cols=134 Identities=25% Similarity=0.270 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC--ccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG--EESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~--Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
|.+++++|++|+||||++++++..+... +.+|+++.. +.... ....+.++++....+.+. ..+++...+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-----g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~~~~---~~~~~~~~~ 72 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-----GMKVLVFKPAIDDRYG-EGKVVSRIGLSREAIPVS---SDTDIFELI 72 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-----CCeEEEEecccccccc-CCcEecCCCCcccceEeC---ChHHHHHHH
Confidence 7899999999999999999999988764 678998843 32221 222345555543332222 223333322
Q ss_pred --cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEEEE
Q 007957 285 --QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAVLY 360 (583)
Q Consensus 285 --~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~Vl~ 360 (583)
...++++|||||+|.+ +..++ ..|.+.++..|++|+++++...- +. ..++..|-.+||.|..
T Consensus 73 ~~~~~~~dvviIDEaq~l----------~~~~v----~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~ 138 (190)
T PRK04296 73 EEEGEKIDCVLIDEAQFL----------DKEQV----VQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTE 138 (190)
T ss_pred HhhCCCCCEEEEEccccC----------CHHHH----HHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEE
Confidence 4457899999999864 22233 34556667789999999877532 22 2345678889999999
Q ss_pred EeC
Q 007957 361 MEG 363 (583)
Q Consensus 361 Le~ 363 (583)
|..
T Consensus 139 l~~ 141 (190)
T PRK04296 139 LKA 141 (190)
T ss_pred eeE
Confidence 974
No 200
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.05 E-value=5.4e-10 Score=119.83 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+.+.+ |.....++...|.++.++.++|+|+++|...+ +..++|.|+.|+.++.
T Consensus 162 ~P~llLLDEP~s~L---------D~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e--------a~~laDri~vl~~G~i 223 (375)
T PRK09452 162 KPKVLLLDESLSAL---------DYKLRKQMQNELKALQRKLGITFVFVTHDQEE--------ALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 45555667778888888889999999999865 7889999999998775
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.05 E-value=9.6e-10 Score=117.96 Aligned_cols=140 Identities=18% Similarity=0.303 Sum_probs=92.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--------CHHHHHH-HHHhccccccccccCC-
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--------SVEQIGN-RADRMMIATEELFLYS- 273 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--------s~~qi~~-R~~rl~i~~~~i~i~~- 273 (583)
+.+|++++|.|+||+|||||++.+++.+... . .-++++++. +..++.. |...+++..++..++.
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-----~-G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~ 120 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-----R-GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPW 120 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----C-cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCC
Confidence 5789999999999999999999999987764 2 235566531 2223221 2122333222111111
Q ss_pred -----------------ccc-HHHHHHHhc-----------------------------ccCCCEEEEccchhhhhhccc
Q 007957 274 -----------------STD-IEDIVEKVQ-----------------------------PLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 274 -----------------~~~-~e~i~~~i~-----------------------------~~~p~lVVIDsi~~l~~~~~~ 306 (583)
... .+.+.+.++ ..+|+++++||+++.+
T Consensus 121 ~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L----- 195 (382)
T TIGR03415 121 LTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL----- 195 (382)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC-----
Confidence 000 011111111 1249999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....++...|.++.++.+.|||+++|...+ +..++|++++|+.++.
T Consensus 196 ----D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e--------~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 196 ----DPLIRTQLQDELLELQAKLNKTIIFVSHDLDE--------ALKIGNRIAIMEGGRI 243 (382)
T ss_pred ----CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 56667788888888888889999999999865 7889999999998764
No 202
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.05 E-value=6.1e-10 Score=111.98 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=51.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|+.++.
T Consensus 148 ~p~llllDEP~~~L---------D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~--------~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 148 EPQVLLLDEPFGAL---------DAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE--------AMEVADRIVVMSNGKI 209 (237)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHhhcCEEEEEECCEE
Confidence 59999999998765 56667778888888877678999999998754 7889999999997764
No 203
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.2e-09 Score=112.75 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=50.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.|.+||+++|.... ++. ||.+++|+.++.
T Consensus 162 ~p~llllDEPt~gL---------D~~~~~~l~~~l~~l~~~~g~tillvtH~~~~--------~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 162 RPECIIFDEPTAML---------DPSGRREVVNTIKELNKKYGITIILITHYMEE--------AVE-ADRIIVMDSGKV 222 (280)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecChHH--------Hhc-CCEEEEEECCEE
Confidence 49999999999865 55666777888888877779999999999865 666 999999988764
No 204
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.05 E-value=1.1e-09 Score=109.36 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=47.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||++..+ |......+...|.+++++.+.+||+++|.... ++ .||.++.|++
T Consensus 155 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~--------~~-~~d~i~~l~~ 212 (225)
T PRK10247 155 MPKVLLLDEITSAL---------DESNKHNVNEIIHRYVREQNIAVLWVTHDKDE--------IN-HADKVITLQP 212 (225)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEECChHH--------HH-hCCEEEEEec
Confidence 59999999998765 55566777888888888889999999999854 66 4999999963
No 205
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=6.4e-10 Score=113.18 Aligned_cols=143 Identities=19% Similarity=0.272 Sum_probs=86.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C-----CCccEEEEeCcc------CHH-HHHH----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G-----EPSPVVYVSGEE------SVE-QIGN---------- 257 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~-----~~~~VLyis~Ee------s~~-qi~~---------- 257 (583)
+.+|++++|.|+||+|||||+..+++.+....+. + ....+.|+.-+. +.. .+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM 103 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence 5789999999999999999999999987654320 0 001133333221 111 1110
Q ss_pred --------HHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007957 258 --------RADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325 (583)
Q Consensus 258 --------R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~l 325 (583)
.++++++.. ....-++.....+ .+...-..+|+++++||+++.+ |......+...|.++
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~ 174 (255)
T PRK11248 104 QRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL---------DAFTREQMQTLLLKL 174 (255)
T ss_pred HHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC---------CHHHHHHHHHHHHHH
Confidence 001111110 0000011111111 1111223469999999999865 555667777888887
Q ss_pred HHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+++.+.+||+++|.... +..+||.++.|++
T Consensus 175 ~~~~g~tviivsH~~~~--------~~~~~d~i~~l~~ 204 (255)
T PRK11248 175 WQETGKQVLLITHDIEE--------AVFMATELVLLSP 204 (255)
T ss_pred HHhcCCEEEEEeCCHHH--------HHHhCCEEEEEeC
Confidence 77679999999998755 8889999999984
No 206
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.05 E-value=1.3e-09 Score=110.90 Aligned_cols=61 Identities=16% Similarity=0.286 Sum_probs=49.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +..+||+|+.|+.++.
T Consensus 170 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 170 EPEVLLFDEPTSAL---------DPELVGEVLRIMQQLAE-EGKTMVVVTHEMGF--------ARHVSSHVIFLHQGKI 230 (257)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999865 55566677777777765 49999999998754 7889999999987663
No 207
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=6.6e-10 Score=111.60 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=51.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++|++++.+ |......+...|.+++.+.+.++|+++|.... +..++|.++.|+.++.
T Consensus 146 ~~p~llllDEPt~gL---------D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~--------~~~~~d~i~~l~~G~i 208 (235)
T cd03299 146 VNPKILLLDEPFSAL---------DVRTKEKLREELKKIRKEFGVTVLHVTHDFEE--------AWALADKVAIMLNGKL 208 (235)
T ss_pred cCCCEEEECCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999765 55566677788888877779999999998754 7889999999987664
No 208
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.04 E-value=1.3e-09 Score=105.00 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=83.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C-----CCccEEEEeCccCHHHHHHHHHhcccccc----ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G-----EPSPVVYVSGEESVEQIGNRADRMMIATE----ELF 270 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~-----~~~~VLyis~Ees~~qi~~R~~rl~i~~~----~i~ 270 (583)
+.+|++++|.|+||+|||||+..++. ..+. + ...+++|+.. ...++++++... ...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q-------~~~l~~~~L~~~~~~~~~~ 86 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ-------LQFLIDVGLGYLTLGQKLS 86 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH-------HHHHHHcCCCccccCCCcC
Confidence 57899999999999999999998752 1110 0 0113555432 233455555321 111
Q ss_pred cCCcccHHH-HHHHhcccC--CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCC
Q 007957 271 LYSSTDIED-IVEKVQPLS--PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347 (583)
Q Consensus 271 i~~~~~~e~-i~~~i~~~~--p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag 347 (583)
-++.....+ .+..+-..+ |+++++||+++.+ +......+...|.++++ .+.+||+++|....
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~----- 151 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGL---------HQQDINQLLEVIKGLID-LGNTVILIEHNLDV----- 151 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-----
Confidence 122222222 122222346 9999999998765 55566677777777754 69999999999753
Q ss_pred ccchheeccEEEEEeCce
Q 007957 348 PRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 348 ~~~Le~~aD~Vl~Le~~~ 365 (583)
+ ..||.++.|+.++
T Consensus 152 ---~-~~~d~i~~l~~g~ 165 (176)
T cd03238 152 ---L-SSADWIIDFGPGS 165 (176)
T ss_pred ---H-HhCCEEEEECCCC
Confidence 5 4699999997654
No 209
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.04 E-value=2.3e-09 Score=109.16 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++...|.+++++++.+||+++|.... +..+||.++.|+.++.
T Consensus 169 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tii~isH~~~~--------~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 169 HPRLVFMDEPTGGL---------DVSVQARLLDLLRGLVRELGLAVVIVTHDLAV--------ARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999765 55566778888888887779999999999865 7889999999998764
No 210
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.04 E-value=1.2e-09 Score=111.70 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 168 ~p~illLDEPt~~L---------D~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 168 KPKLIVLDEAVSNL---------DMVLQAVILELLRKLQQAFGTAYLFITHDLRL--------VQSFCQRVAVMDKGQI 229 (265)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------HHHHhcEEEEEeCCEE
Confidence 59999999998765 55556678888888888779999999999755 7889999999987764
No 211
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.04 E-value=2.1e-10 Score=119.26 Aligned_cols=197 Identities=24% Similarity=0.377 Sum_probs=131.4
Q ss_pred CCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHHHHhcccccc
Q 007957 190 GLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNRADRMMIATE 267 (583)
Q Consensus 190 Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R~~rl~i~~~ 267 (583)
|. .+||++|+||++-|+++.|+|+||+|||.|++.++... .. ....++|++.+- .+..+.....+.+....
T Consensus 96 g~--~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~--~g---ge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~ 168 (326)
T KOG1433|consen 96 GS--KALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC--GG---GEGKVLYIDTESTFRLERLTEIAGRSGLRGR 168 (326)
T ss_pred ch--hhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc--cC---CcceEEEEecchhcccchhhhhhhhhhhhhH
Confidence 76 89999999999999999999999999999997777654 21 256899999886 33333333444443322
Q ss_pred ----ccccCCc-------ccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCC----HHHHHHHHHHHHHHHHcCCCc
Q 007957 268 ----ELFLYSS-------TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG----LMQVKECTSALLRFAKKTNIP 332 (583)
Q Consensus 268 ----~i~i~~~-------~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~----~~qvrei~~~L~~lAk~~g~t 332 (583)
++..... ..+......+.+....++++|+.++.+.....+ .+. ..-....++.|++++++++..
T Consensus 169 ~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g-~~~~~a~~~~~~~~~~~l~~la~~~g~~ 247 (326)
T KOG1433|consen 169 DTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKG-RGELSARQMLLAKFLRSLKKLADEFGVA 247 (326)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEeccccccccccccc-ccchHHHHHHHHHHHHHHHHHHHhcCce
Confidence 2221111 112233344455578899999999988777666 332 223455677888999999999
Q ss_pred EEEecccCCccC-----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 333 VLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 333 VIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
|++.+|++..-+ ..+...+.|.+++.+++...+ ...|.-.+.+.++-+.++ ..|.+...|+.
T Consensus 248 vvitn~v~~~~d~~~~f~~~~~~~~~~~~~~H~~~tr~~~~~~~-g~~~~~k~~~s~~l~e~~-~~~~i~~~g~~ 320 (326)
T KOG1433|consen 248 VVITNQVTAQVDGAIMFGSDPKKPIGGNIWAHAVTTRLGLRKGK-GERRICKIADSPCLPEAE-AVFAITEDGIS 320 (326)
T ss_pred EEEecccccccccccccCcccccccccchHHHHHHHHHHHHhcc-ccchhhhhhcCCCCCcch-hHHHHHhhhhh
Confidence 999999986421 123456777777777776532 233455556666654444 56777776654
No 212
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=9.5e-10 Score=113.88 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=49.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .|.+||+++|.... ++.+||.|+.|+.++.
T Consensus 163 ~p~lLlLDEPt~gL---------D~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~--------~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 163 EPEILCLDEPAAGL---------DPEGRKEMMQLFKDYQK-AGHTVILVTHNMDD--------VAEYADDVLVLEHGKL 223 (287)
T ss_pred CCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999765 55566677777777755 49999999998755 8889999999988764
No 213
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.04 E-value=1.5e-09 Score=119.23 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=58.0
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.-..+|+++|.||+++.+ |.....+++..|+++.++.|+++|+|+|.. ..++++||+|++|++
T Consensus 168 ALa~~P~LLIaDEPTTaL---------Dvt~q~qIL~llk~l~~e~g~a~l~ITHDl--------~Vva~~aDrv~Vm~~ 230 (539)
T COG1123 168 ALALKPKLLIADEPTTAL---------DVTTQAQILDLLKDLQRELGMAVLFITHDL--------GVVAELADRVVVMYK 230 (539)
T ss_pred HHhCCCCEEEECCCcccc---------CHHHHHHHHHHHHHHHHHcCcEEEEEcCCH--------HHHHHhcCeEEEEEC
Confidence 334579999999999987 667778999999999999999999999998 459999999999998
Q ss_pred cee
Q 007957 364 EKF 366 (583)
Q Consensus 364 ~~~ 366 (583)
++.
T Consensus 231 G~i 233 (539)
T COG1123 231 GEI 233 (539)
T ss_pred CEE
Confidence 765
No 214
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.1e-09 Score=113.24 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=50.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.+++++.|.+||+++|.... ++ .||+++.|+.++.
T Consensus 161 ~P~llllDEPt~gL---------D~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~--------~~-~~d~i~~l~~G~i 221 (282)
T PRK13640 161 EPKIIILDESTSML---------DPAGKEQILKLIRKLKKKNNLTVISITHDIDE--------AN-MADQVLVLDDGKL 221 (282)
T ss_pred CCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HH-hCCEEEEEECCEE
Confidence 59999999999865 56667778888888887779999999999754 65 6999999988764
No 215
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=6.2e-10 Score=119.49 Aligned_cols=62 Identities=11% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+.+.+ |......+...|.++.++.++|+|+++|...+ +..++|++++|+.++.
T Consensus 167 ~P~lLLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e--------a~~laDri~vl~~G~i 228 (377)
T PRK11607 167 RPKLLLLDEPMGAL---------DKKLRDRMQLEVVDILERVGVTCVMVTHDQEE--------AMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999998765 44445566677778888889999999999865 7889999999998764
No 216
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=8.6e-10 Score=114.25 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.++.|++++.
T Consensus 168 ~p~lLlLDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~--------~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 168 DGNTLVLDEPTGGL---------DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ--------VLRIADEVIVMHEGKV 229 (289)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 55556677778888887779999999998754 7889999999998764
No 217
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.2e-09 Score=111.84 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +.. ||+|++|+.++.
T Consensus 160 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~--------~~~-~d~i~~l~~G~i 220 (269)
T PRK13648 160 NPSVIILDEATSML---------DPDARQNLLDLVRKVKSEHNITIISITHDLSE--------AME-ADHVIVMNKGTV 220 (269)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCchH--------Hhc-CCEEEEEECCEE
Confidence 59999999999865 55666777788888877778999999998754 555 999999988764
No 218
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.04 E-value=1.9e-09 Score=109.05 Aligned_cols=61 Identities=13% Similarity=0.309 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.++.|++++.
T Consensus 162 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~--------~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 162 RPEVILFDEPTSAL---------DPELVGEVLNTIRQLAQE-KRTMVIVTHEMSF--------ARDVADRAIFMDQGRI 222 (250)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999865 555566777777777654 8999999998754 7889999999987753
No 219
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.03 E-value=3.9e-10 Score=140.51 Aligned_cols=155 Identities=17% Similarity=0.252 Sum_probs=102.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc------------cc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE------------LF 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~------------i~ 270 (583)
.+.+|++++|.|+||+|||||++.+++.+.... .-+++.+...........+.+++-.+. +.
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts------G~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~ 2034 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS------GDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLY 2034 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc------cEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHH
Confidence 578999999999999999999999999987643 244555443221111111222221110 00
Q ss_pred c------CCcccH----HHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 271 L------YSSTDI----EDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 271 i------~~~~~~----e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
+ ...... +++++. .--.+|+++++||+++.+ |...
T Consensus 2035 l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL---------Dp~s 2105 (2272)
T TIGR01257 2035 LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM---------DPQA 2105 (2272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC---------CHHH
Confidence 0 000000 111111 111359999999999865 5666
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCC
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGS 381 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~ 381 (583)
.+.+.+.|.+++++ |.+||+++|...+ ++.+||+|+.|.+++.........+|+|+|.
T Consensus 2106 r~~l~~lL~~l~~~-g~TIILtTH~mee--------~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2106 RRMLWNTIVSIIRE-GRAVVLTSHSMEE--------CEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 77777778777665 8999999999866 8999999999998876555566677888874
No 220
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.1e-09 Score=108.03 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=47.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++++ +.+||+++|.... ++.++|+++.|+.++.
T Consensus 148 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~vsH~~~~--------~~~~~d~i~~l~~g~i 207 (211)
T cd03264 148 DPSILIVDEPTAGL---------DPEERIRFRNLLSELGE--DRIVILSTHIVED--------VESLCNQVAVLNKGKL 207 (211)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999765 45556667777777764 4899999998754 7889999999987653
No 221
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.03 E-value=2.1e-09 Score=106.77 Aligned_cols=60 Identities=15% Similarity=0.341 Sum_probs=49.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|... +..+||.|+.|+.++
T Consensus 159 ~p~illlDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tii~~sh~~~---------~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 159 RPKLVLADEPTAAL---------DSKSGRDVVELMQKLAREQGCTILIVTHDNR---------ILDVADRIVHMEDGK 218 (220)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------HHhhCCEEEEEECCE
Confidence 59999999999865 5556677888888888777999999999963 446899999998764
No 222
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1e-09 Score=110.22 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||+++.|++++.
T Consensus 155 ~p~illlDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 215 (237)
T PRK11614 155 QPRLLLLDEPSLGL---------APIIIQQIFDTIEQLREQ-GMTIFLVEQNANQ--------ALKLADRGYVLENGHV 215 (237)
T ss_pred CCCEEEEcCccccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHH--------HHhhCCEEEEEeCCEE
Confidence 59999999999765 455566777777777654 8999999998754 7889999999987764
No 223
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.03 E-value=7.8e-10 Score=117.77 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=52.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|.++.++.++|+|+++|...+ +..+||.|++|++++.
T Consensus 153 ~~P~llLLDEP~s~L---------D~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e--------a~~~~Dri~vl~~G~i 215 (353)
T PRK10851 153 VEPQILLLDEPFGAL---------DAQVRKELRRWLRQLHEELKFTSVFVTHDQEE--------AMEVADRVVVMSQGNI 215 (353)
T ss_pred cCCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999998765 55556677788888888889999999999865 8889999999998764
No 224
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.3e-09 Score=113.84 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.+ .|.|||+++|.... +..+||+|+.|++++.
T Consensus 183 ~P~lLlLDEPt~~L---------D~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~--------~~~~adrv~vl~~G~i 243 (305)
T PRK13651 183 EPDFLVFDEPTAGL---------DPQGVKEILEIFDNLNK-QGKTIILVTHDLDN--------VLEWTKRTIFFKDGKI 243 (305)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHH--------HHHhCCEEEEEECCEE
Confidence 49999999999866 45556677777777764 59999999999755 7789999999988764
No 225
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.4e-09 Score=107.01 Aligned_cols=141 Identities=17% Similarity=0.298 Sum_probs=98.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhccccccccc--------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATEELF-------- 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~~i~-------- 270 (583)
-+++|+++.|.|++|+|||||++.+.+..... ..-+++.+++. ..+++.....+|+-...+-
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t------~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~ 99 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT------SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVL 99 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCC------cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHH
Confidence 35899999999999999999999999965553 23556666542 2334443344444322110
Q ss_pred -------------------cCCcccHHHHHHHhccc-----------------------------CCCEEEEccchhhhh
Q 007957 271 -------------------LYSSTDIEDIVEKVQPL-----------------------------SPRALIIDSIQTVYL 302 (583)
Q Consensus 271 -------------------i~~~~~~e~i~~~i~~~-----------------------------~p~lVVIDsi~~l~~ 302 (583)
+++..+-...+++++.. +|++++-||+.+.+
T Consensus 100 ~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasL- 178 (258)
T COG3638 100 ENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL- 178 (258)
T ss_pred HHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCccccc-
Confidence 12223323333332221 49999999998866
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 303 RGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 303 ~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|+...+.+|..|++++++.|+|||+.-|.-+- ...+||+|+-|..++.
T Consensus 179 --------Dp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl--------A~~Y~~Riigl~~G~i 226 (258)
T COG3638 179 --------DPESAKKVMDILKDINQEDGITVIVNLHQVDL--------AKKYADRIIGLKAGRI 226 (258)
T ss_pred --------ChhhHHHHHHHHHHHHHHcCCEEEEEechHHH--------HHHHHhhheEecCCcE
Confidence 56667889999999999999999999998753 6788999999988764
No 226
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=99.96 Aligned_cols=139 Identities=21% Similarity=0.371 Sum_probs=91.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc----ccc----cccccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM----MIA----TEELFL 271 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl----~i~----~~~i~i 271 (583)
+.+|+.++|.||+|+|||||++++|..+... ..++||-+|. .++.++.+..-+ .+. .+|+.+
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~------~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlif 99 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPT------SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF 99 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCC------CceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcccc
Confidence 5789999999999999999999999998875 3588888875 344444433111 110 111110
Q ss_pred ---------------------------CC--ccc----HHHHHHHhc--ccCCCEEEEccchhhhhhcccCCCCCHHHHH
Q 007957 272 ---------------------------YS--STD----IEDIVEKVQ--PLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316 (583)
Q Consensus 272 ---------------------------~~--~~~----~e~i~~~i~--~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr 316 (583)
++ .++ -.+.+..++ ++.|+++++|++++.+ +....+
T Consensus 100 P~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL---------D~~nkr 170 (223)
T COG4619 100 PWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL---------DESNKR 170 (223)
T ss_pred chHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc---------ChhhHH
Confidence 00 000 122333333 3469999999999866 333445
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+-..+.++.++.+++++.++|.... .-+.+|.++.+..+.
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~dq--------a~rha~k~itl~~G~ 211 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKDQ--------AIRHADKVITLQPGH 211 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChHH--------HhhhhheEEEeccCc
Confidence 55566666777889999999998754 445699999987654
No 227
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.2e-09 Score=112.55 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=50.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.++.|++++.
T Consensus 163 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 163 EPKILVLDEPTAGL---------DPKGRKELMTLFKKLHQS-GMTIVLVTHLMDD--------VANYADFVYVLEKGKL 223 (280)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeccHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 555667777888887664 8999999999754 7889999999988764
No 228
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=2.2e-09 Score=108.12 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=48.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.+ .+.++|+++|.... +..++|.++.|++++.
T Consensus 159 ~p~llilDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~--------~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 159 EPQVLLFDEPTAAL---------DPEITAQIVSIIRELAE-TGITQVIVTHEVEV--------ARKTASRVVYMENGHI 219 (242)
T ss_pred CCCEEEEcCCCCcC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999865 45556666777777654 58999999999754 7788999999987653
No 229
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.02 E-value=9.7e-10 Score=104.20 Aligned_cols=138 Identities=18% Similarity=0.313 Sum_probs=90.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC-HHHHHHHH-----------------Hh--cc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES-VEQIGNRA-----------------DR--MM 263 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees-~~qi~~R~-----------------~r--l~ 263 (583)
++.|+++.|.|++|+|||||+..+|+...+.. ..+++.+++- ...-.+|- +. +|
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~------G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPAS------GEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCC------ceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 58899999999999999999999999988753 3555655531 11111110 01 11
Q ss_pred ccccccccCCcccHHH------------------------------HHHHhcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 264 IATEELFLYSSTDIED------------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 264 i~~~~i~i~~~~~~e~------------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
+.+ .+. +...+-++ +...+-+.+| ++++||+.+.+ ++.
T Consensus 96 l~P-~Lk-L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P-ilLLDEPFsAL---------dP~ 163 (231)
T COG3840 96 LSP-GLK-LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP-ILLLDEPFSAL---------DPA 163 (231)
T ss_pred CCc-ccc-cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC-eEEecCchhhc---------CHH
Confidence 111 000 01111111 1122223344 99999998876 333
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
-..++...+.+++.+.+.|+++++|...+ +.+++|.++++++++..
T Consensus 164 LR~eMl~Lv~~l~~E~~~TllmVTH~~~D--------a~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 164 LRAEMLALVSQLCDERKMTLLMVTHHPED--------AARIADRVVFLDNGRIA 209 (231)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCHHH--------HHHhhhceEEEeCCEEE
Confidence 44566777778999999999999999876 99999999999998753
No 230
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.02 E-value=2.3e-09 Score=106.82 Aligned_cols=60 Identities=10% Similarity=0.306 Sum_probs=49.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ .+||+++|.... +..+||.++.|++++.
T Consensus 159 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~--~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 218 (227)
T cd03260 159 EPEVLLLDEPTSAL---------DPISTAKIEELIAELKKE--YTIVIVTHNMQQ--------AARVADRTAFLLNGRL 218 (227)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHhhC--cEEEEEeccHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999865 555667778888888765 899999998754 7889999999998764
No 231
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.02 E-value=1.3e-09 Score=109.63 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +.++||.++.|++++.
T Consensus 161 ~p~~lllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 161 DPKLLLLDEPVAGM---------TDEETEKTAELLKSLAG--KHSVVVVEHDMEF--------VRSIADKVTVLHQGSV 220 (242)
T ss_pred CCCEEEecCCccCC---------CHHHHHHHHHHHHHHhc--CCEEEEEECCHHH--------HHHhCCEEEEEECCeE
Confidence 59999999999865 55556677777777754 5899999998755 8889999999987763
No 232
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.5e-09 Score=114.11 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=50.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.+ .+.|||+++|.... +..+||+|++|+.++.
T Consensus 194 ~p~iLLLDEPtsgL---------D~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~--------~~~~adri~vl~~G~i 254 (320)
T PRK13631 194 QPEILIFDEPTAGL---------DPKGEHEMMQLILDAKA-NNKTVFVITHTMEH--------VLEVADEVIVMDKGKI 254 (320)
T ss_pred CCCEEEEECCccCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 55666777778877765 48999999999754 7788999999998774
No 233
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.02 E-value=1.8e-09 Score=114.03 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=53.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |.....+++..|.++.++.+.++|+++|.... +.++||++++|+.++.
T Consensus 179 ~P~llilDEPts~L---------D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~--------~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 179 RPKLLIADEPTTAL---------DVTVQAQIMTLLNELKREFNTAIIMITHDLGV--------VAGICDKVLVMYAGRT 240 (330)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 56667788888888888889999999999854 7889999999998775
No 234
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.4e-09 Score=111.58 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.++.|++++.
T Consensus 154 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~--------~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 154 QARYLLLDEPTAGL---------DPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDL--------IYEISDAVYVLRQGQI 214 (271)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 555666777788877654 8999999998755 7788999999988764
No 235
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.01 E-value=1.8e-09 Score=105.90 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
+|+++++||+++.+ |......+...|.+++++ +.++|+++|.... + .+||.++.|
T Consensus 152 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~--------~-~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSL---------DPKNRDEVLDLLLELNDE-GKTIIIVTHDPEV--------A-KQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCC---------CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--------H-hhcCEEEeC
Confidence 59999999999865 555667777778777764 8999999998742 4 468988764
No 236
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.01 E-value=9.3e-10 Score=117.44 Aligned_cols=140 Identities=17% Similarity=0.305 Sum_probs=91.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHH-HHHHhccccccccccCCc----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIG-NRADRMMIATEELFLYSS---- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~-~R~~rl~i~~~~i~i~~~---- 274 (583)
+.+|++++|.|++|+|||||++.+++.+.... .-+++.++. +..+++ .|...+++..++..++..
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~------G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~ 89 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA------GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTIL 89 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCCCCc------eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHH
Confidence 57899999999999999999999999987642 244555543 222221 111122222111111110
Q ss_pred --------------cc-HHHHHHHh-----------------------------cccCCCEEEEccchhhhhhcccCCCC
Q 007957 275 --------------TD-IEDIVEKV-----------------------------QPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 275 --------------~~-~e~i~~~i-----------------------------~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
.. .+++.+.+ -..+|+++++||+++.+
T Consensus 90 eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL--------- 160 (363)
T TIGR01186 90 QNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL--------- 160 (363)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC---------
Confidence 00 01111111 11259999999998765
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....++...|.++.++.+.|||+++|...+ +..+||.|++|+.++.
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e--------a~~~~drI~vl~~G~i 208 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDE--------AIRIGDRIVIMKAGEI 208 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEeCCEE
Confidence 55666778888888888889999999999865 7889999999988764
No 237
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.01 E-value=2.3e-09 Score=108.96 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=88.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC---CCccEEEEeCccCH-----HHHHH---------------HHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG---EPSPVVYVSGEESV-----EQIGN---------------RAD 260 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~---~~~~VLyis~Ees~-----~qi~~---------------R~~ 260 (583)
+.+|++++|.|+||+|||||+..+++.+....+.. ....+.|+..+... ..+.. .++
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 106 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK 106 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence 57899999999999999999999999876543200 01235555433111 01111 111
Q ss_pred hccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEe
Q 007957 261 RMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336 (583)
Q Consensus 261 rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIli 336 (583)
.+++.. ..+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.+++++.+.+||++
T Consensus 107 ~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~~~g~tiiiv 177 (251)
T PRK09544 107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV---------DVNGQVALYDLIDQLRRELDCAVLMV 177 (251)
T ss_pred HcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 222210 0000111111111 1122223479999999999765 55566777888888887779999999
Q ss_pred cccCCccCcCCccchheeccEEEEEeC
Q 007957 337 GHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 337 sH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|.... +...||.++.|++
T Consensus 178 sH~~~~--------i~~~~d~i~~l~~ 196 (251)
T PRK09544 178 SHDLHL--------VMAKTDEVLCLNH 196 (251)
T ss_pred ecCHHH--------HHHhCCEEEEECC
Confidence 999855 7889999999964
No 238
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.3e-09 Score=118.77 Aligned_cols=139 Identities=19% Similarity=0.315 Sum_probs=89.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccc--------------ccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA--------------TEE 268 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~--------------~~~ 268 (583)
-+.+|++..|.|+||+|||||++.+++.+.++.+ -++++++...-.--..+...|+. .+|
T Consensus 30 ~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G------~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeN 103 (500)
T COG1129 30 TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG------EILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAEN 103 (500)
T ss_pred EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc------eEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHH
Confidence 3689999999999999999999999999987532 44555442110000001111110 011
Q ss_pred ccc---------------------------------------CCc--ccHHHHHHHhcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFL---------------------------------------YSS--TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i---------------------------------------~~~--~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+++ ++- ..+-+|..++. .++++||+||+++.+
T Consensus 104 ifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~-~~arllIlDEPTaaL------ 176 (500)
T COG1129 104 IFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS-FDARVLILDEPTAAL------ 176 (500)
T ss_pred hhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh-cCCCEEEEcCCcccC------
Confidence 110 000 00111222222 378999999999876
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+..+...+...++++. +.|++||+|+|...+ +..+||+|.+|.+++.
T Consensus 177 ---t~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~E--------i~~i~DritVlRDG~~ 223 (500)
T COG1129 177 ---TVKETERLFDLIRRLK-AQGVAIIYISHRLDE--------VFEIADRITVLRDGRV 223 (500)
T ss_pred ---CHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHH--------HHHhcCEEEEEeCCEE
Confidence 4555666666666554 569999999998877 9999999999998764
No 239
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=2.1e-09 Score=108.25 Aligned_cols=61 Identities=10% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|..+++ .+.+||+++|.... +..+||.++.|++++.
T Consensus 155 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~--------~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 155 NPKFILLDEPFAGV---------DPISVIDIKRIIEHLRD-SGLGVLITDHNVRE--------TLAVCERAYIVSQGHL 215 (241)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHH--------HHHhcCEEEEEeCCeE
Confidence 59999999999765 44445556666666654 58999999998754 8889999999987764
No 240
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.01 E-value=2.3e-09 Score=109.87 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=52.2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.++|+++|.... +..+||.++.|++++.
T Consensus 168 ~~p~lllLDEPt~~L---------D~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~--------i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 168 VEPKLLILDEAVSNL---------DLVLQAGVIRLLKKLQQQFGTACLFITHDLRL--------VERFCQRVMVMDNGQI 230 (268)
T ss_pred cCCCEEEEeCCCccc---------CHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999998765 55556677788888887779999999999855 8889999999987764
No 241
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.01 E-value=1.7e-09 Score=118.77 Aligned_cols=143 Identities=18% Similarity=0.305 Sum_probs=95.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc--cCHHHHHHHHHhccccccc------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE--ESVEQIGNRADRMMIATEE------------ 268 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E--es~~qi~~R~~rl~i~~~~------------ 268 (583)
-+.+|+++.|.|++|+|||||++.+++...+. ++.+.|...+ .+..+......++.+...+
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-----~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPS-----SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 46899999999999999999999999998774 3344443322 1111111111111111100
Q ss_pred ------cccCCc---cc----HHHHHHH---------------------------hcccCCCEEEEccchhhhhhcccCC
Q 007957 269 ------LFLYSS---TD----IEDIVEK---------------------------VQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 269 ------i~i~~~---~~----~e~i~~~---------------------------i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
+.+... .. +.++++. .-..+|++||.||+.+.+
T Consensus 388 ~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaL------- 460 (539)
T COG1123 388 DILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL------- 460 (539)
T ss_pred HHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcccc-------
Confidence 000000 00 1111221 222359999999999876
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|+.-...+++.|+++-++.|.+.++|+|... .++++||+|.+|+.++..
T Consensus 461 --Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~--------vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 461 --DVSVQAQVLNLLKDLQEELGLTYLFISHDLA--------VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred --CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--------HHHhhCceEEEEECCeEE
Confidence 6677788999999999999999999999984 499999999999988753
No 242
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.9e-09 Score=110.73 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=49.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++ .||.++.|++++.
T Consensus 160 ~p~lllLDEP~~gL---------D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------~~-~~d~v~~l~~G~i 220 (271)
T PRK13632 160 NPEIIIFDESTSML---------DPKGKREIKKIMVDLRKTRKKTLISITHDMDE--------AI-LADKVIVFSEGKL 220 (271)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEEechhH--------Hh-hCCEEEEEECCEE
Confidence 59999999998765 55667778888888877667999999998754 55 6999999988764
No 243
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=1.3e-09 Score=115.03 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=53.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |.....+++..|.++.++.+.++|+++|.... +..+||+|++|+.++.
T Consensus 171 ~P~llilDEPts~L---------D~~~~~~il~lL~~l~~~~g~til~iTHdl~~--------~~~~adri~vm~~G~i 232 (326)
T PRK11022 171 RPKLLIADEPTTAL---------DVTIQAQIIELLLELQQKENMALVLITHDLAL--------VAEAAHKIIVMYAGQV 232 (326)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 56667788888989888889999999999854 7789999999998765
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.99 E-value=3.8e-09 Score=107.06 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..++|.++.|+.++.
T Consensus 166 ~p~vlllDEP~~~L---------D~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~--------~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 166 RPRLVFMDEPTGGL---------DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV--------ARLLAQRLLVMQQGRV 227 (253)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999998765 55566777788888877779999999998754 7788999999987764
No 245
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.99 E-value=3e-09 Score=106.15 Aligned_cols=139 Identities=25% Similarity=0.290 Sum_probs=85.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc--------------cCHHH-HHHHH---------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE--------------ESVEQ-IGNRA--------- 259 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E--------------es~~q-i~~R~--------- 259 (583)
+.+|++++|.|+||+|||||+..+++.+....+ -+++.++ .+..+ +..-.
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G------~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~ 118 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG------TVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKE 118 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce------EEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 579999999999999999999999998765422 2222221 11111 11000
Q ss_pred ---------Hhcccccc---ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 007957 260 ---------DRMMIATE---ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA 326 (583)
Q Consensus 260 ---------~rl~i~~~---~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA 326 (583)
+.+++... .+.-++.....+ .+...-..+|+++|+||+++.+ |....+.+...|.+++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL---------D~~~~~~~~~~l~~~~ 189 (224)
T cd03220 119 IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG---------DAAFQEKCQRRLRELL 189 (224)
T ss_pred HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHH
Confidence 01111000 000011111111 1122223479999999999865 5556677788888877
Q ss_pred HcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 327 KKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 327 k~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++ +.+||+++|.... +..++|.++.|+.++.
T Consensus 190 ~~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 220 (224)
T cd03220 190 KQ-GKTVILVSHDPSS--------IKRLCDRALVLEKGKI 220 (224)
T ss_pred hC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 65 8999999999755 7889999999987653
No 246
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=1.9e-09 Score=111.04 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.|.+||+++|.... +. .||.++.|+.++.
T Consensus 158 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~--------~~-~~d~i~~l~~G~i 218 (277)
T PRK13642 158 RPEIIILDESTSML---------DPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE--------AA-SSDRILVMKAGEI 218 (277)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HH-hCCEEEEEECCEE
Confidence 59999999998765 56667778888888888779999999999855 65 5999999998764
No 247
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.98 E-value=2.2e-09 Score=119.30 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=51.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... +..+||.|+.|++++.
T Consensus 153 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~--------~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 153 EPDLLILDEPFDGL---------DVASRQQLAELLASLHQS-GITLVLVLNRFDE--------IPDFVQFAGVLADCTL 213 (490)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999999865 666777888888888765 8999999998755 8889999999987764
No 248
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.98 E-value=3.1e-09 Score=105.93 Aligned_cols=61 Identities=23% Similarity=0.371 Sum_probs=48.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC-ccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK-SGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k-~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.++ +.++|+++|... + +..++|.++.|+.++.
T Consensus 161 ~p~illlDEP~~gL---------D~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~--------~~~~~d~i~~l~~G~i 222 (226)
T cd03234 161 DPKVLILDEPTSGL---------DSFTALNLVSTLSQLARR-NRIVILTIHQPRSD--------LFRLFDRILLLSSGEI 222 (226)
T ss_pred CCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999765 455566777777777654 899999999863 4 8899999999998764
No 249
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.98 E-value=1e-09 Score=115.52 Aligned_cols=140 Identities=15% Similarity=0.252 Sum_probs=91.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCC---------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS--------- 273 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~--------- 273 (583)
-+.+|+++.|.||+||||||+++.||+...... .-+++.++.-.. +-..-+.+++...++-+++
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~------G~I~l~G~~i~~-lpp~kR~ig~VFQ~YALFPHltV~~NVa 99 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS------GEILLDGEDITD-VPPEKRPIGMVFQSYALFPHMTVEENVA 99 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC------ceEEECCEECCC-CChhhcccceeecCcccCCCCcHHHHhh
Confidence 468999999999999999999999999988753 345555543211 0000011111111111100
Q ss_pred ---------------------------------------ccc-HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 274 ---------------------------------------STD-IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 274 ---------------------------------------~~~-~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
... -.-.+...-..+|+++++||+.+-+ |..
T Consensus 100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaL---------D~k 170 (352)
T COG3842 100 FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSAL---------DAK 170 (352)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccch---------hHH
Confidence 000 0112222334469999999998754 333
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
-..++...|+++.++.|+|+|+++|.-.+ .-.++|+|..|..++.
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDqeE--------Al~msDrI~Vm~~G~I 215 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQEE--------ALAMSDRIAVMNDGRI 215 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCHHH--------HhhhccceEEccCCce
Confidence 34456678999999999999999999866 6789999999998765
No 250
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.98 E-value=2.9e-09 Score=105.35 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----CC-------CccEEEEeCcc------CHH-HHHH-------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----GE-------PSPVVYVSGEE------SVE-QIGN------- 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~~-------~~~VLyis~Ee------s~~-qi~~------- 257 (583)
-+.+|++++|.|+||+|||||+..+++.+....+. +. ...+.|+.-+. +.. .+..
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR 112 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC
Confidence 35789999999999999999999999987654320 00 01133433221 110 0000
Q ss_pred --------HHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007957 258 --------RADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325 (583)
Q Consensus 258 --------R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~l 325 (583)
.+..+++.. ..+.-++.....+ .+...-..+|+++++||+++.+ |......+...|.++
T Consensus 113 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~ 183 (214)
T PRK13543 113 RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL---------DLEGITLVNRMISAH 183 (214)
T ss_pred cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC---------CHHHHHHHHHHHHHH
Confidence 001111100 0000011111111 1111223469999999998765 455566677777777
Q ss_pred HHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+++ +.++|+++|.... +.+++|.++.|+.
T Consensus 184 ~~~-~~tiii~sH~~~~--------~~~~~~~i~~l~~ 212 (214)
T PRK13543 184 LRG-GGAALVTTHGAYA--------APPVRTRMLTLEA 212 (214)
T ss_pred HhC-CCEEEEEecChhh--------hhhhcceEEEEee
Confidence 654 8899999998865 8899999999863
No 251
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.4e-09 Score=108.81 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..++|.++.|++++.
T Consensus 156 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~--------~~~~~d~i~~l~~G~i 216 (255)
T PRK11231 156 DTPVVLLDEPTTYL---------DINHQVELMRLMRELNTQ-GKTVVTVLHDLNQ--------ASRYCDHLVVLANGHV 216 (255)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--------HHHhcCEEEEEECCeE
Confidence 59999999998765 455566777777777654 8999999998754 7889999999987664
No 252
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.98 E-value=2.3e-09 Score=106.66 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=86.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----CC------CccEEEEeCcc------CH-HHHHHH--------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----GE------PSPVVYVSGEE------SV-EQIGNR-------- 258 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~~------~~~VLyis~Ee------s~-~qi~~R-------- 258 (583)
+.+|++++|.|+||+|||||+..+++.+....+. +. ...+.|+.-+. +. +.+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~ 102 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD 102 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999987654320 00 01233432211 11 111100
Q ss_pred ------HHhcccccc---ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 259 ------ADRMMIATE---ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 259 ------~~rl~i~~~---~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
++++++... ...-++.....+ .+...--.+|+++++|++++.+ |......+...|.++++
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L---------D~~~~~~l~~~L~~~~~- 172 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL---------DPIGIQELRELIRSFPE- 172 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC---------CHHHHHHHHHHHHHHHH-
Confidence 011111100 000011111111 1122223469999999999765 55556677777877765
Q ss_pred CCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 329 TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 329 ~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.+||+++|.... +..+||+++.|+.++.
T Consensus 173 ~~~tiii~sH~~~~--------~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 173 QGITVILSSHILSE--------VQQLADHIGIISEGVL 202 (223)
T ss_pred CCCEEEEEcCCHHH--------HHHhcCEEEEEeCCEE
Confidence 48899999998754 7889999999987764
No 253
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.98 E-value=3e-09 Score=105.99 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=47.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+.+.|.++++ .+.++|+++|.... +.++||.++.+ .++
T Consensus 130 ~~p~llilDEP~~~L---------D~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~--------~~~~~d~i~~l-~G~ 189 (223)
T TIGR03771 130 TRPSVLLLDEPFTGL---------DMPTQELLTELFIELAG-AGTAILMTTHDLAQ--------AMATCDRVVLL-NGR 189 (223)
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------HHHhCCEEEEE-CCE
Confidence 369999999999865 55556677777777765 48999999998755 88899999998 454
No 254
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=1.2e-09 Score=108.31 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=95.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc----cCHHHHHHHH--Hhcccc--------ccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE----ESVEQIGNRA--DRMMIA--------TEE 268 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E----es~~qi~~R~--~rl~i~--------~~~ 268 (583)
-+.+|++++|.||||+|||||...+.+.+.+. ...+++.++ .++.++..+- +.+... .+|
T Consensus 26 ~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~------~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN 99 (250)
T COG0411 26 EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS------SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN 99 (250)
T ss_pred EEcCCeEEEEECCCCCCceeeeeeecccccCC------CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence 46899999999999999999999999999885 235566665 3444433321 000000 011
Q ss_pred cccC------------------Cccc-HH---------------------------HHHHHhc--ccCCCEEEEccchhh
Q 007957 269 LFLY------------------SSTD-IE---------------------------DIVEKVQ--PLSPRALIIDSIQTV 300 (583)
Q Consensus 269 i~i~------------------~~~~-~e---------------------------~i~~~i~--~~~p~lVVIDsi~~l 300 (583)
+.+- .+.. .+ +.++... ..+|+++++||+.+.
T Consensus 100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAG 179 (250)
T COG0411 100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAG 179 (250)
T ss_pred HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCC
Confidence 1110 0000 01 1111111 125999999999875
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 301 YLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 301 ~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
. +..+..+++..+.++.++.|+||++|-|..+- +-.+||+|++|..++.
T Consensus 180 l---------n~~e~~~l~~~i~~i~~~~g~tillIEHdM~~--------Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 180 L---------NPEETEELAELIRELRDRGGVTILLIEHDMKL--------VMGLADRIVVLNYGEV 228 (250)
T ss_pred C---------CHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH--------HhhhccEEEeccCCcC
Confidence 5 56778888999999998889999999999865 8999999999987763
No 255
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.97 E-value=2.4e-09 Score=108.89 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.+ .+.+||+++|.... +..+||++++|++++.
T Consensus 155 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 155 EPKLLLLDEPTNHL---------DVRAQLETLALVRELAA-TGVTVVAALHDLNL--------AASYCDHVVVLDGGRV 215 (256)
T ss_pred CCCEEEEcCccccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHHhCCEEEEEeCCCE
Confidence 59999999999865 45556667777777754 48999999998865 8889999999987653
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=2.1e-09 Score=107.71 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... ++. ||.++.|+.++.
T Consensus 155 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tiii~sh~~~~--------~~~-~d~~~~l~~g~i 213 (236)
T cd03253 155 NPPILLLDEATSAL---------DTHTEREIQAALRDVSK--GRTTIVIAHRLST--------IVN-ADKIIVLKDGRI 213 (236)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHhcC--CCEEEEEcCCHHH--------HHh-CCEEEEEECCEE
Confidence 59999999999865 45556677777777654 8999999998754 655 999999987764
No 257
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.97 E-value=4.8e-09 Score=111.35 Aligned_cols=148 Identities=20% Similarity=0.283 Sum_probs=105.6
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEE----EEeC--ccCHHHHHHHHHhccccccc------
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVV----YVSG--EESVEQIGNRADRMMIATEE------ 268 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VL----yis~--Ees~~qi~~R~~rl~i~~~~------ 268 (583)
+|.+..|+++++.|+||+|||||++.+|+.+.++.+...+-+|- |++. ..+.+++..+..+-.+....
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~ 440 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV 440 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhc
Confidence 58899999999999999999999999999998764321122232 3443 34566665554332221111
Q ss_pred ------------cccCCcccHHHHH-HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 007957 269 ------------LFLYSSTDIEDIV-EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335 (583)
Q Consensus 269 ------------i~i~~~~~~e~i~-~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIl 335 (583)
+.-++..+++++. .+....++|+.+||++.+.+ +..|...+++.+++++.+++.+.++
T Consensus 441 ~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L---------DvEqR~~vakvIRR~~e~~~kta~v 511 (591)
T COG1245 441 KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL---------DVEQRIIVAKVIRRFIENNEKTALV 511 (591)
T ss_pred CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc---------cHHHHHHHHHHHHHHHhhcCceEEE
Confidence 1112233344432 33345579999999998866 6778888899999999999999999
Q ss_pred ecccCCccCcCCccchheeccEEEEEeCce
Q 007957 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 336 isH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+-|..-- +.+++|++|.|+++.
T Consensus 512 VdHDi~~--------~dyvsDr~ivF~GeP 533 (591)
T COG1245 512 VDHDIYM--------IDYVSDRLIVFEGEP 533 (591)
T ss_pred Eecceeh--------hhhhhceEEEEecCC
Confidence 9998744 889999999999865
No 258
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.97 E-value=1.8e-09 Score=100.36 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=78.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH-HH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI-VE 282 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i-~~ 282 (583)
+.+|++++|.|+||+|||||+..+++..... .+ -+++.+. ..+++..+ ++.....++ +.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----~G-~i~~~~~----------~~i~~~~~----lS~G~~~rv~la 82 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPD-----EG-IVTWGST----------VKIGYFEQ----LSGGEKMRLALA 82 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-----ce-EEEECCe----------EEEEEEcc----CCHHHHHHHHHH
Confidence 5789999999999999999999999887653 22 3444432 11111111 333222222 22
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
..-..+|+++++||+++.+ |......+...|.++ +.++|+++|.... +..++|.++.|+
T Consensus 83 ral~~~p~illlDEP~~~L---------D~~~~~~l~~~l~~~----~~til~~th~~~~--------~~~~~d~v~~l~ 141 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHL---------DLESIEALEEALKEY----PGTVILVSHDRYF--------LDQVATKIIELE 141 (144)
T ss_pred HHHhcCCCEEEEeCCccCC---------CHHHHHHHHHHHHHc----CCEEEEEECCHHH--------HHHhCCEEEEEe
Confidence 2334589999999998765 333444444444443 5799999998754 778899999997
Q ss_pred Cc
Q 007957 363 GE 364 (583)
Q Consensus 363 ~~ 364 (583)
.+
T Consensus 142 ~g 143 (144)
T cd03221 142 DG 143 (144)
T ss_pred CC
Confidence 64
No 259
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=2e-09 Score=107.65 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=46.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.+||+++|.... ++. ||.++.|+.++.
T Consensus 156 ~p~lllLDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~--------~~~-~d~v~~l~~G~i 214 (234)
T cd03251 156 DPPILILDEATSAL---------DTESERLVQAALERLM-K-NRTTFVIAHRLST--------IEN-ADRIVVLEDGKI 214 (234)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH--------Hhh-CCEEEEecCCeE
Confidence 59999999998865 4555667777777774 3 7899999999865 665 999999987764
No 260
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=6.5e-09 Score=109.82 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |.....++++.|.++.++.|+++|+++|.... +..+||+|++|+.++.
T Consensus 176 ~P~llilDEPts~L---------D~~~~~~i~~lL~~l~~~~g~tii~itHdl~~--------v~~~~dri~vm~~G~i 237 (330)
T PRK15093 176 QPRLLIADEPTNAM---------EPTTQAQIFRLLTRLNQNNNTTILLISHDLQM--------LSQWADKINVLYCGQT 237 (330)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 56667788888888888789999999999855 8889999999998765
No 261
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.96 E-value=4e-09 Score=106.59 Aligned_cols=60 Identities=12% Similarity=0.278 Sum_probs=48.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++++ +.+||+++|.... +..+||.++.|++++.
T Consensus 162 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 162 EPEVLLLDEPTSAL---------DPIATGKIEELIQELKK--KYTIVIVTHNMQQ--------AARISDRTAFFYDGEL 221 (247)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh--cCeEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999765 45556677777777765 3899999998855 8889999999998764
No 262
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.95 E-value=2.5e-09 Score=107.34 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=47.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. .+.+||+++|.... ++ .||.++.|+.++.
T Consensus 157 ~p~llllDEP~~gL---------D~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~--------~~-~~d~v~~l~~G~i 215 (238)
T cd03249 157 NPKILLLDEATSAL---------DAESEKLVQEALDRAM--KGRTTIVIAHRLST--------IR-NADLIAVLQNGQV 215 (238)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH--------Hh-hCCEEEEEECCEE
Confidence 69999999998765 5555667777777774 58999999998755 66 7999999988764
No 263
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.95 E-value=2.3e-09 Score=107.49 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=47.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++ + +.+||+++|.... ++ .||.++.|++++.
T Consensus 156 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~--------~~-~~d~v~~l~~G~i 214 (237)
T cd03252 156 NPRILIFDEATSAL---------DYESEHAIMRNMHDIC-A-GRTVIIIAHRLST--------VK-NADRIIVMEKGRI 214 (237)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH--------HH-hCCEEEEEECCEE
Confidence 59999999999865 5555667777777775 3 8999999998854 65 4999999998764
No 264
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.95 E-value=2.8e-09 Score=119.10 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=51.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... +..+||.|++|+.++.
T Consensus 157 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~--------~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 157 RDSRILILDEPTASL---------TPAETERLFSRIRELLAQ-GVGIVFISHKLPE--------IRQLADRISVMRDGTI 218 (510)
T ss_pred cCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999866 556677777888887765 8999999999755 8889999999987764
No 265
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.95 E-value=5.4e-09 Score=107.49 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... ++.+||.+++|++++.
T Consensus 171 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tviiisH~~~~--------~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 171 QPPRYLLLDEPTAAL---------DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL--------AARHADRIAMLADGAI 233 (272)
T ss_pred CCCCEEEEcCccccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------HHHhCCEEEEEECCeE
Confidence 479999999998765 55566677788888877778999999998755 8889999999997753
No 266
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.95 E-value=4.8e-09 Score=103.21 Aligned_cols=140 Identities=23% Similarity=0.325 Sum_probs=92.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccc--c------------ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA--T------------EEL 269 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~--~------------~~i 269 (583)
+.+|+++.|.|+||+|||||++.+++.+... .+ .+.+.+++-...--.+..+.|+. + +|+
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-----~G-~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL 99 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPR-----SG-RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENL 99 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----Ce-eEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHH
Confidence 5789999999999999999999999988763 22 44445554221111111111211 1 122
Q ss_pred cc----CC-----cccHHHHHHH---------------------------hcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 270 FL----YS-----STDIEDIVEK---------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 270 ~i----~~-----~~~~e~i~~~---------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
.+ .. ..+++++.+. .--.+|+++++||++..+ .+.
T Consensus 100 ~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GL---------aP~ 170 (237)
T COG0410 100 LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---------APK 170 (237)
T ss_pred hhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCc---------CHH
Confidence 11 00 0112222222 111259999999998765 455
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
-+.++...++++.++.++||+++-|.-+. .-+++|+.++|++++.
T Consensus 171 iv~~I~~~i~~l~~~~g~tIlLVEQn~~~--------Al~iaDr~yvle~Gri 215 (237)
T COG0410 171 IVEEIFEAIKELRKEGGMTILLVEQNARF--------ALEIADRGYVLENGRI 215 (237)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeccHHH--------HHHhhCEEEEEeCCEE
Confidence 67889999999998889999999988754 6779999999998875
No 267
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.94 E-value=4.8e-09 Score=99.85 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=79.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC---CCccEEEEeCccCHH--HHHHHHHhccccccccccCCcccHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG---EPSPVVYVSGEESVE--QIGNRADRMMIATEELFLYSSTDIE 278 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~---~~~~VLyis~Ees~~--qi~~R~~rl~i~~~~i~i~~~~~~e 278 (583)
+.+|++++|.|++|+|||||+..+++.+....+.. ....+.|+.-+.... .+...+. +. ...-++.....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~---~~--~~~~LS~G~~~ 98 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLI---YP--WDDVLSGGEQQ 98 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhh---cc--CCCCCCHHHHH
Confidence 57899999999999999999999999876542200 002344443322100 1111100 00 01112222222
Q ss_pred H-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccE
Q 007957 279 D-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357 (583)
Q Consensus 279 ~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~ 357 (583)
+ .+...-..+|+++++||+++.+ |......+...|.++ +.++|+++|... +...||.
T Consensus 99 rv~laral~~~p~~lllDEPt~~L---------D~~~~~~l~~~l~~~----~~tiiivsh~~~---------~~~~~d~ 156 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSAL---------DEESEDRLYQLLKEL----GITVISVGHRPS---------LWKFHDR 156 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCcccc---------CHHHHHHHHHHHHHh----CCEEEEEeCChh---------HHhhCCE
Confidence 2 1222233589999999999865 444444555555443 689999999863 3458999
Q ss_pred EEEEeCce
Q 007957 358 VLYMEGEK 365 (583)
Q Consensus 358 Vl~Le~~~ 365 (583)
++.|+++.
T Consensus 157 i~~l~~~~ 164 (166)
T cd03223 157 VLDLDGEG 164 (166)
T ss_pred EEEEcCCC
Confidence 99997653
No 268
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=4.9e-09 Score=107.87 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=47.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.. .|.|||+++|.... ++ .||.|+.|++++.
T Consensus 154 ~p~lllLDEPt~gL---------D~~~~~~l~~~l~~l~~-~g~til~~tH~~~~--------~~-~~d~v~~l~~G~i 213 (274)
T PRK13644 154 EPECLIFDEVTSML---------DPDSGIAVLERIKKLHE-KGKTIVYITHNLEE--------LH-DADRIIVMDRGKI 213 (274)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--------Hh-hCCEEEEEECCEE
Confidence 59999999999765 45556677777777765 49999999999854 65 5999999998764
No 269
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=4.2e-09 Score=105.06 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=46.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++ + +.+||+++|.... ++. ||.++.|..++.
T Consensus 157 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~--------~~~-~d~i~~l~~g~~ 215 (229)
T cd03254 157 DPKILILDEATSNI---------DTETEKLIQEALEKLM-K-GRTSIIIAHRLST--------IKN-ADKILVLDDGKI 215 (229)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH--------Hhh-CCEEEEEeCCeE
Confidence 59999999999765 4555666777777774 3 8899999998754 654 999999987764
No 270
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.93 E-value=4.6e-09 Score=103.27 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=81.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHH-HHHHHHhcccccc-----------cccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ-IGNRADRMMIATE-----------ELFL 271 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~q-i~~R~~rl~i~~~-----------~i~i 271 (583)
+.+|++++|.|++|+|||||+..+++.+....+ .+++.+...... .......+++-.+ ++..
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G------~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~ 104 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG------KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP 104 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC------eEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcc
Confidence 578999999999999999999999998765422 233443321100 0000011111111 1111
Q ss_pred CCcccHHHHHH----------------------HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC
Q 007957 272 YSSTDIEDIVE----------------------KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329 (583)
Q Consensus 272 ~~~~~~e~i~~----------------------~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~ 329 (583)
......+++.+ ..-..+|+++++||+++.+ |......+...|.++. +
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~-~- 173 (207)
T cd03369 105 FDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI---------DYATDALIQKTIREEF-T- 173 (207)
T ss_pred cCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC---------CHHHHHHHHHHHHHhc-C-
Confidence 11001111111 1112369999999998765 4445566777777763 3
Q ss_pred CCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 330 g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.++|+++|.... ++. +|.++.|++++.
T Consensus 174 ~~tiii~th~~~~--------~~~-~d~v~~l~~g~i 201 (207)
T cd03369 174 NSTILTIAHRLRT--------IID-YDKILVMDAGEV 201 (207)
T ss_pred CCEEEEEeCCHHH--------Hhh-CCEEEEEECCEE
Confidence 8999999998754 665 899999987653
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.93 E-value=7.1e-09 Score=116.03 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +.++||.|+.|++++.
T Consensus 186 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 186 EPFLFLADEPTGTL---------DPQTAKLVHNALEEAVKASGISMVLTSHWPEV--------IEDLSDKAIWLENGEI 247 (520)
T ss_pred CCCEEEeeCCcccC---------CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------HHHhcCEEEEEeCCEE
Confidence 49999999999876 66667788888888888889999999999855 8889999999987654
No 272
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.93 E-value=4.5e-09 Score=107.09 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=47.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ +......+...|.+++++ +++||+++|.... +..+||.|+.|++.
T Consensus 157 ~p~illlDEPts~L---------D~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~--------~~~~ad~i~~l~~~ 215 (255)
T cd03236 157 DADFYFFDEPSSYL---------DIKQRLNAARLIRELAED-DNYVLVVEHDLAV--------LDYLSDYIHCLYGE 215 (255)
T ss_pred CCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHhc-CCEEEEEECCHHH--------HHHhCCEEEEECCC
Confidence 59999999999865 555566677777777654 8999999999854 88899999999753
No 273
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=9.8e-09 Score=97.19 Aligned_cols=140 Identities=19% Similarity=0.310 Sum_probs=96.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--------------CHHHHHHHHHhcccccccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--------------SVEQIGNRADRMMIATEEL 269 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--------------s~~qi~~R~~rl~i~~~~i 269 (583)
...|+++-|.|.+|+|||||++.+-..-.+ ....+.+.+|+ +..|+..--.++++...++
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F 102 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKP------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHF 102 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCC------CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence 468999999999999999999988554333 34466777764 3445544334555443332
Q ss_pred ccCC-----------------cc---cHHH-----------------------------HHHHhcccCCCEEEEccchhh
Q 007957 270 FLYS-----------------ST---DIED-----------------------------IVEKVQPLSPRALIIDSIQTV 300 (583)
Q Consensus 270 ~i~~-----------------~~---~~e~-----------------------------i~~~i~~~~p~lVVIDsi~~l 300 (583)
.+++ .. -+++ .+.......|+++++|++++.
T Consensus 103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA 182 (256)
T COG4598 103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182 (256)
T ss_pred chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence 2111 00 0111 112222345999999999986
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 301 YLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 301 ~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
+ |+.-+.+++..+.++|.+ |.|.++++|..+- ..+.+..|++|+.+...
T Consensus 183 L---------DPElVgEVLkv~~~LAeE-grTMv~VTHEM~F--------AR~Vss~v~fLh~G~iE 231 (256)
T COG4598 183 L---------DPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF--------ARDVSSHVIFLHQGKIE 231 (256)
T ss_pred C---------CHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH--------HHhhhhheEEeecceec
Confidence 6 666788999999999977 9999999999854 78889999999987654
No 274
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=5.5e-09 Score=105.90 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=48.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+|++|++++.
T Consensus 167 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 167 KPKILLMDEPTANI---------DPVGTAKIEELLFELKK--EYTIVLVTHSPAQ--------AARVSDYVAFLYLGKL 226 (253)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHhh--CCEEEEEECCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999998765 45556677777777754 5899999998754 7889999999988764
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.93 E-value=4.1e-09 Score=117.45 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++.+.|.++++ .+.+||+++|.... ++.+||.|+.|++++.
T Consensus 159 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~--------~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 159 ESKVIIMDEPTDAL---------TDTETESLFRVIRELKS-QGRGIVYISHRLKE--------IFEICDDVTVFRDGQF 219 (501)
T ss_pred CCCEEEEeCCcCCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH--------HHHhCCEEEEEeCCEE
Confidence 59999999999866 55566677777777765 48999999999865 8899999999987764
No 276
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=6.9e-09 Score=105.21 Aligned_cols=60 Identities=10% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.+||+++|.... +..+||.|+.|+.++.
T Consensus 167 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~--------~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 167 EPEVLLMDEPASAL---------DPIATQKIEELIHELK-A-RYTIIIVTHNMQQ--------AARVSDVTAFFYMGKL 226 (253)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEEecHHH--------HHHhCCEEEEEECCEE
Confidence 69999999999765 4555667777777774 3 6899999998755 7889999999988764
No 277
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.93 E-value=6.3e-09 Score=101.98 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=43.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
+|+++++||+++.+ |......+...|.++.+ .+.++|+++|...+ +...++.++.+
T Consensus 143 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~--------~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTAL---------DKAGVARFAEAMAGHCA-RGGMVVLTTHQDLG--------LSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCchh--------hhhccceeEec
Confidence 69999999999865 55566777777777765 48899999997654 56677777765
No 278
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.93 E-value=5e-09 Score=119.72 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=53.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |......+.+.|.+++++.|.+||+++|.... +.++||+|++|+.++.
T Consensus 480 ~~p~llllDEPts~L---------D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~--------v~~~~dri~vl~~G~i 542 (623)
T PRK10261 480 LNPKVIIADEAVSAL---------DVSIRGQIINLLLDLQRDFGIAYLFISHDMAV--------VERISHRVAVMYLGQI 542 (623)
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999866 66667788888888888889999999998754 8899999999998764
No 279
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.4e-09 Score=112.20 Aligned_cols=139 Identities=14% Similarity=0.258 Sum_probs=88.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCC---------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYS--------- 273 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~--------- 273 (583)
+..|+++.|.||+|||||||++.||+...... .-++|+++.-.+ .... +.+++-.+++-+++
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~------G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS------GEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC------ceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHHhh
Confidence 47899999999999999999999999987653 355666553221 1111 11111111111111
Q ss_pred --------------------------------------cccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 274 --------------------------------------STDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 274 --------------------------------------~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
...-++ .+...--.+|+++++||+.+.+ |..-
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL---------Da~l 168 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL---------DAKL 168 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHh---------hHHH
Confidence 000111 1111122369999999998755 2222
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
...+-..|+++-++.++|+|.++|...+ .-.++|+|.+|..+...
T Consensus 169 R~~mr~ei~~lh~~l~~T~IYVTHDq~E--------Amtladri~Vm~~G~i~ 213 (338)
T COG3839 169 RVLMRSEIKKLHERLGTTTIYVTHDQVE--------AMTLADRIVVMNDGRIQ 213 (338)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCHHH--------HHhhCCEEEEEeCCeee
Confidence 3344456777888999999999999866 77899999999976653
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.92 E-value=5.2e-09 Score=106.02 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=49.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.+++|++++.
T Consensus 151 ~p~llllDEPt~~L---------D~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~--------~~~~~d~i~~l~~G~i 211 (248)
T PRK03695 151 AGQLLLLDEPMNSL---------DVAQQAALDRLLSELCQQ-GIAVVMSSHDLNH--------TLRHADRVWLLKQGKL 211 (248)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 56999999999765 555666777777777654 8999999999855 8889999999998764
No 281
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.92 E-value=4.6e-09 Score=104.16 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.+ +.+||+++|.... ++. ||.++.|+.++.
T Consensus 157 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------~~~-~d~i~~l~~g~~ 215 (221)
T cd03244 157 KSKILVLDEATASV---------DPETDALIQKTIREAFK--DCTVLTIAHRLDT--------IID-SDRILVLDKGRV 215 (221)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH--------Hhh-CCEEEEEECCeE
Confidence 59999999998765 44455566667766643 5899999998754 665 899999987653
No 282
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.92 E-value=8e-09 Score=105.81 Aligned_cols=60 Identities=8% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.+++|++++.
T Consensus 181 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~l~~--~~tiiivtH~~~~--------~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 181 SPEVILMDEPCSAL---------DPIATAKVEELIDELRQ--NYTIVIVTHSMQQ--------AARVSQRTAFFHLGNL 240 (267)
T ss_pred CCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHhc--CCeEEEEEcCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999999865 55556677777777754 6899999998755 8889999999987654
No 283
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.91 E-value=2.2e-09 Score=133.92 Aligned_cols=153 Identities=14% Similarity=0.247 Sum_probs=95.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc------------cc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE------------LF 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~------------i~ 270 (583)
.+.+|++++|.|+||+|||||+..+++.+.+.. ..+++.+.....+.....+.+++-.+. +.
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts------G~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~ 1025 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTS------GTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHIL 1025 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc------eEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHH
Confidence 578999999999999999999999999987642 244555543222221111223321111 10
Q ss_pred c----C--Ccc----cHHHHHHHh--------------------------cccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 271 L----Y--SST----DIEDIVEKV--------------------------QPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 271 i----~--~~~----~~e~i~~~i--------------------------~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
+ . ... .++++++.+ --.+|+++++||+++.+ |...
T Consensus 1026 f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL---------Dp~s 1096 (2272)
T TIGR01257 1026 FYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV---------DPYS 1096 (2272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC---------CHHH
Confidence 0 0 000 011222211 11249999999999865 5666
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccC
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFG 380 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g 380 (583)
.+.+.+.|.++ ++ |.+||+++|...+ ++.+||+|+.|++++.........+|++||
T Consensus 1097 r~~l~~lL~~l-~~-g~TIIltTHdmde--------a~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1097 RRSIWDLLLKY-RS-GRTIIMSTHHMDE--------ADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred HHHHHHHHHHH-hC-CCEEEEEECCHHH--------HHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 77777777777 33 8999999999866 888999999999876533222223344444
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.91 E-value=6.9e-09 Score=103.22 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=45.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+++++||+++.+ |....+.+...|.++.+ .+++||+++|.... ++.+||.++.|.
T Consensus 167 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~--------~~~~~d~i~~~~ 223 (224)
T TIGR02324 167 DYPILLLDEPTASL---------DAANRQVVVELIAEAKA-RGAALIGIFHDEEV--------RELVADRVMDVT 223 (224)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHHhcceeEecC
Confidence 59999999998865 55566777777877755 48999999999643 677899998763
No 285
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.1e-08 Score=99.35 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=89.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc---cCHHHHHHHHH------hcccccc--cc---
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE---ESVEQIGNRAD------RMMIATE--EL--- 269 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E---es~~qi~~R~~------rl~i~~~--~i--- 269 (583)
+.+|++..|.||||+|||||++.+++.+... .+.|.|..-. .++.++..+.. .+.++.. ++
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~-----~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~m 98 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPD-----SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQM 98 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCC-----CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHh
Confidence 5899999999999999999999999999875 4467665533 23334322211 1111110 00
Q ss_pred -----------------------------------ccCCccc-----HHHHHHHhccc--CCCEEEEccchhhhhhcccC
Q 007957 270 -----------------------------------FLYSSTD-----IEDIVEKVQPL--SPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 270 -----------------------------------~i~~~~~-----~e~i~~~i~~~--~p~lVVIDsi~~l~~~~~~~ 307 (583)
..++..+ +.+++..+-.- .++.+++||+++.+
T Consensus 99 Gr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL------ 172 (259)
T COG4559 99 GRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL------ 172 (259)
T ss_pred cccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc------
Confidence 0000000 11122211111 24699999998765
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.......++..+++|++ |..|+.|-|...- ..++||+++.|..++.
T Consensus 173 ---Di~HQ~~tl~laR~la~~-g~~V~~VLHDLNL--------AA~YaDrivll~~Grv 219 (259)
T COG4559 173 ---DIAHQHHTLRLARQLARE-GGAVLAVLHDLNL--------AAQYADRIVLLHQGRV 219 (259)
T ss_pred ---chHHHHHHHHHHHHHHhc-CCcEEEEEccchH--------HHHhhheeeeeeCCeE
Confidence 555566778888889988 5788888776633 6789999999998874
No 286
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=8.5e-09 Score=101.24 Aligned_cols=56 Identities=18% Similarity=0.080 Sum_probs=42.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... +....++++.+
T Consensus 147 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--------i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAI---------DKQGVARLEALLAQHAE-QGGMVILTTHQDLP--------VASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHH-CCCEEEEEecChhh--------hccCCceEEec
Confidence 59999999998765 55556677777777765 48899999999865 66666666655
No 287
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9e-09 Score=105.42 Aligned_cols=61 Identities=8% Similarity=0.251 Sum_probs=48.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|+.++.
T Consensus 181 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tiii~tH~~~~--------~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 181 MKPAVLLLDEPASAL---------DPISNAKIEELITELKE--EYSIIIVTHNMQQ--------ALRVSDRTAFFLNGDL 241 (268)
T ss_pred CCCCEEEEcCCCccc---------CHHHHHHHHHHHHHHhc--CCEEEEEEeCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999865 45556667777777754 5799999999754 7889999999987763
No 288
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.90 E-value=9.8e-09 Score=104.56 Aligned_cols=60 Identities=10% Similarity=0.305 Sum_probs=47.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.++|+++|.... +..+||.+++|++++.
T Consensus 173 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~--------~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 173 NPDVLLMDEPTSAL---------DPVSTRKIEELILKLK-E-KYTIVIVTHNMQQ--------AARVSDQTAFFYMGEL 232 (259)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 4445566667777764 3 6899999998754 7889999999987764
No 289
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.7e-08 Score=96.92 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=94.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccc--------ccccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIA--------TEELF 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~--------~~~i~ 270 (583)
-+++|.++.|.||||+|||||+..++..+..+ ...+++++-+ +.+.+..++.-+.-. -+++.
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d------~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv 96 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD------SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLV 96 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhcccc------CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHh
Confidence 36889999999999999999999988887764 3467776543 334455544322110 00000
Q ss_pred ----------cCCcccHHHHHHH-----------------------------hcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 271 ----------LYSSTDIEDIVEK-----------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 271 ----------i~~~~~~e~i~~~-----------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
.+...+...+-++ +-..+.+.|++||+-.-+ +
T Consensus 97 ~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNL---------D 167 (252)
T COG4604 97 GFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL---------D 167 (252)
T ss_pred hcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCccccc---------c
Confidence 0011121111111 112247899999996543 5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
...-.++|..|+++|++.|.||+++-|.-.. ...++|.|+.|..++.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf--------AS~YsD~IVAlK~G~v 214 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF--------ASCYSDHIVALKNGKV 214 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH--------HHhhhhheeeecCCEE
Confidence 5667789999999999999999999998744 6778999999998764
No 290
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.90 E-value=4.6e-09 Score=117.25 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... +..+||.+++|++++.
T Consensus 163 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~--------~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 163 DAKVIIMDEPTSSL---------TNKEVDYLFLIMNQLRKE-GTAIVYISHKLAE--------IRRICDRYTVMKDGSS 223 (510)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 566677788888888765 8999999998755 8889999999987664
No 291
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.90 E-value=4.3e-09 Score=104.78 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=45.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.++++ +.++|+++|.... ++. ||.++.|+.++
T Consensus 168 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------~~~-~d~i~~l~~g~ 225 (226)
T cd03248 168 NPQVLILDEATSAL---------DAESEQQVQQALYDWPE--RRTVLVIAHRLST--------VER-ADQILVLDGGR 225 (226)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHcC--CCEEEEEECCHHH--------HHh-CCEEEEecCCc
Confidence 59999999999865 55556677777777653 5899999999854 665 99999997653
No 292
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.90 E-value=7.4e-09 Score=102.63 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=46.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++++ +.+||+++|.... + .+||.++.|+.++.
T Consensus 158 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------~-~~~d~v~~l~~g~i 216 (220)
T cd03245 158 DPPILLLDEPTSAM---------DMNSEERLKERLRQLLG--DKTLIIITHRPSL--------L-DLVDRIIVMDSGRI 216 (220)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH--------H-HhCCEEEEEeCCeE
Confidence 59999999999865 55556677777777765 3899999998743 5 58999999987653
No 293
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=103.37 Aligned_cols=60 Identities=12% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.++.|++++.
T Consensus 163 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 163 EPDVILMDEPTSAL---------DPIATHKIEELMEELKK--NYTIVIVTHSMQQ--------ARRISDRTAFFLMGEL 222 (249)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHhc--CCeEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 45556667777777754 4899999998755 8889999999988764
No 294
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=6.7e-09 Score=105.08 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++ + +.++|+++|.... +...||.++.|+.++.
T Consensus 164 ~p~lllLDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 164 QPEVLLADEPTANL---------DPENTAKIESLFLELK-K-DMTIVLVTHFPQQ--------AARISDYVAFLYKGQI 223 (250)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH--------HHHhcCEEEEEECCeE
Confidence 59999999998765 4455566777777764 3 7899999998754 7789999999987763
No 295
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1e-08 Score=104.06 Aligned_cols=60 Identities=8% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+...|.+++ + +.+||+++|.... +..+||+++.|+.++.
T Consensus 168 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~--------~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 168 EPNVILMDEPTSAL---------DPISTGKIEELIINLK-E-SYTIIIVTHNMQQ--------AGRISDRTAFFLNGCI 227 (254)
T ss_pred CCCEEEEeCCCccc---------CHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999866 4555667777777774 3 6899999998754 7889999999987764
No 296
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=8.3e-09 Score=104.53 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=47.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++ ++ +.+||+++|.... +..+||.+++|++++.
T Consensus 165 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~-~~-~~tilivsh~~~~--------~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 165 EPEVILMDEPCSAL---------DPVSTMRIEELMQEL-KQ-NYTIAIVTHNMQQ--------AARASDWTGFLLTGDL 224 (251)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHH--------HHhhCCEEEEEeCCeE
Confidence 59999999999765 445555666666666 33 7899999998755 7889999999988764
No 297
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.89 E-value=6.4e-09 Score=104.61 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=49.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... ++.. ||.++.|++++
T Consensus 161 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~--------~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 161 LEPKLAILDEIDSGL---------DIDALKIVAEGINRLRE-PDRSFLIITHYQRL--------LNYIKPDYVHVLLDGR 222 (243)
T ss_pred cCCCEEEecCCcccC---------CHHHHHHHHHHHHHHHH-CCcEEEEEEecHHH--------HHhhcCCeEEEEeCCE
Confidence 469999999999865 55556677777777765 58899999998754 7777 89999998765
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 223 i 223 (243)
T TIGR01978 223 I 223 (243)
T ss_pred E
Confidence 3
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.89 E-value=1.1e-08 Score=114.92 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=53.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||+|+.|++++.
T Consensus 173 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~--------~~~~~dri~~l~~G~i 235 (529)
T PRK15134 173 TRPELLIADEPTTAL---------DVSVQAQILQLLRELQQELNMGLLFITHNLSI--------VRKLADRVAVMQNGRC 235 (529)
T ss_pred cCCCEEEEcCCCCcc---------CHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH--------HHHhcCEEEEEECCEE
Confidence 469999999999876 66677788888888888779999999999865 7889999999987654
No 299
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=9.2e-09 Score=104.98 Aligned_cols=59 Identities=12% Similarity=0.298 Sum_probs=49.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||+|+.|+.
T Consensus 168 ~p~vllLDEP~~~L---------D~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~--------i~~~~d~i~~l~~ 226 (261)
T PRK14258 168 KPKVLLMDEPCFGL---------DPIASMKVESLIQSLRLRSELTMVIVSHNLHQ--------VSRLSDFTAFFKG 226 (261)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--------HHHhcCEEEEEcc
Confidence 59999999999765 55566677788888877678999999999865 8999999999987
No 300
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.89 E-value=9.5e-09 Score=104.00 Aligned_cols=60 Identities=12% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.+||+++|.... +..++|.++.|+.++.
T Consensus 164 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~--------~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 164 EPEVLLMDEPTSAL---------DPISTLKIEELIQELK-K-DYTIVIVTHNMQQ--------ASRISDKTAFFLNGEI 223 (250)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999999865 4555566777777774 3 6899999998754 7889999999987764
No 301
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.89 E-value=9.9e-09 Score=100.24 Aligned_cols=43 Identities=21% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
+|+++++||+++.+ |......+...|.+++++ +.++|+++|..
T Consensus 145 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tii~~sH~~ 187 (198)
T TIGR01189 145 RAPLWILDEPTTAL---------DKAGVALLAGLLRAHLAR-GGIVLLTTHQD 187 (198)
T ss_pred CCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHhC-CCEEEEEEccc
Confidence 59999999998765 555566777777777654 88999999987
No 302
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.89 E-value=7.2e-09 Score=106.43 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=46.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|.... +..+||.++++ +++
T Consensus 160 ~p~llllDEPt~~L---------D~~~~~~l~~~L~~~~~~-g~tviivsH~~~~--------~~~~~d~v~~~-~G~ 218 (272)
T PRK15056 160 QGQVILLDEPFTGV---------DVKTEARIISLLRELRDE-GKTMLVSTHNLGS--------VTEFCDYTVMV-KGT 218 (272)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------HHHhCCEEEEE-CCE
Confidence 59999999999865 555566777777777654 8999999998754 78899999877 444
No 303
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=103.31 Aligned_cols=60 Identities=8% Similarity=0.246 Sum_probs=48.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|+.++.
T Consensus 165 ~p~llllDEP~~~L---------D~~~~~~l~~~L~~~~~--~~tiiivsH~~~~--------~~~~~d~v~~l~~G~i 224 (251)
T PRK14270 165 KPDVILMDEPTSAL---------DPISTLKIEDLMVELKK--EYTIVIVTHNMQQ--------ASRVSDYTAFFLMGDL 224 (251)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh--CCeEEEEEcCHHH--------HHHhcCEEEEEECCeE
Confidence 59999999999765 55556677777777765 4789999998754 7889999999988764
No 304
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=103.32 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.++|+++|.... +..++|.++.|+.++.
T Consensus 164 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tili~sH~~~~--------~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 164 EPEVILLDEPTSAL---------DPIATQRIEKLLEELSE--NYTIVIVTHNIGQ--------AIRIADYIAFMYRGEL 223 (250)
T ss_pred CCCEEEEeCCcccc---------CHHHHHHHHHHHHHHhc--CcEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 45556667777777753 6899999998754 7888999999998764
No 305
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=107.39 Aligned_cols=140 Identities=20% Similarity=0.293 Sum_probs=94.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+.+|+.++|.|++|+|||||.+.+...+... .-++|.++. +..+.+.--.++.+...
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-------G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmt 381 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-------GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMT 381 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC-------ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccC
Confidence 46899999999999999999999999887753 355666553 12222111122221111
Q ss_pred -------ccccCC-----cccHHHHHHHh------------------------------cccCCCEEEEccchhhhhhcc
Q 007957 268 -------ELFLYS-----STDIEDIVEKV------------------------------QPLSPRALIIDSIQTVYLRGV 305 (583)
Q Consensus 268 -------~i~i~~-----~~~~e~i~~~i------------------------------~~~~p~lVVIDsi~~l~~~~~ 305 (583)
.+.+-. ....+++.+++ --.+|++|++||+++.+
T Consensus 382 V~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL---- 457 (534)
T COG4172 382 VGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL---- 457 (534)
T ss_pred HHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh----
Confidence 111110 01112222222 22469999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.+-...++..|+++-+++|.+-++|+|..+ ++..+||.||+|..++.
T Consensus 458 -----D~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~--------VvrAl~~~viVm~~Gki 505 (534)
T COG4172 458 -----DRSVQAQVLDLLRDLQQKHGLSYLFISHDLA--------VVRALCHRVIVMRDGKI 505 (534)
T ss_pred -----hHHHHHHHHHHHHHHHHHhCCeEEEEeccHH--------HHHHhhceEEEEeCCEE
Confidence 4445567888899999999999999999985 48999999999998875
No 306
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=103.26 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=48.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|++++.
T Consensus 165 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 165 TSPKIILLDEPTSAL---------DPISAGKIEETLLGLKD--DYTMLLVTRSMQQ--------ASRISDRTGFFLDGDL 225 (252)
T ss_pred cCCCEEEEcCCcccc---------CHHHHHHHHHHHHHHhh--CCeEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999865 55556677777777754 5899999998754 7889999999998764
No 307
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.5e-08 Score=102.50 Aligned_cols=60 Identities=12% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.+||+++|.... +..+||.++.|+.++.
T Consensus 164 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~--------~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 164 SPSVLLMDEPASAL---------DPISTAKVEELIHELK-K-DYTIVIVTHNMQQ--------AARVSDKTAFFYMGEM 223 (250)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999999865 4555566777777774 3 6899999998754 7889999999987764
No 308
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.4e-08 Score=104.38 Aligned_cols=60 Identities=10% Similarity=0.252 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|++++.
T Consensus 185 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tiiivsH~~~~--------i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 185 EPDVILMDEPTSAL---------DPISTLKVEELVQELKK--DYSIIIVTHNMQQ--------AARISDKTAFFLNGYV 244 (271)
T ss_pred CCCEEEEeCCCCcC---------CHHHHHHHHHHHHHHHc--CCEEEEEEcCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 45555667777777754 6899999998754 7889999999988764
No 309
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=1.2e-08 Score=103.87 Aligned_cols=60 Identities=10% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|+.++.
T Consensus 172 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~l~~--~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 172 KPKIILFDEPTSAL---------DPISTARIEDLIMNLKK--DYTIVIVTHNMQQ--------AARISDYTGFFLMGEL 231 (258)
T ss_pred CCCEEEEeCCCccc---------CHHHHHHHHHHHHHHhh--CCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 45556667777777743 7899999998755 7789999999988764
No 310
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=104.31 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=48.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.+||+++|.... +..++|.++.|++++.
T Consensus 174 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 174 RPEVLLLDEPCSAL---------DPISTGRIEELITELK-Q-DYTVVIVTHNMQQ--------AARCSDYTAFMYLGEL 233 (260)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 4555667777777774 3 6899999998754 7889999999998764
No 311
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=9.2e-09 Score=103.97 Aligned_cols=60 Identities=12% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++. + +.++|+++|.... +...+|.++.|+.++.
T Consensus 160 ~p~lllLDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~--------~~~~~d~i~~l~~G~i 219 (246)
T PRK14269 160 KPKLLLLDEPTSAL---------DPISSGVIEELLKELS-H-NLSMIMVTHNMQQ--------GKRVADYTAFFHLGEL 219 (246)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHh-C-CCEEEEEecCHHH--------HHhhCcEEEEEECCEE
Confidence 59999999999865 4555667777777764 3 8899999998755 7889999999998764
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.87 E-value=9.8e-09 Score=114.69 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=50.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |......+...|.+++++ +.+||+++|.... ++.+||.+++|++++.
T Consensus 420 ~~p~lLlLDEPt~gL---------D~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~--------i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 420 ASPQLLIVDEPTRGV---------DVSARNDIYQLIRSIAAQ-NVAVLFISSDLEE--------IEQMADRVLVMHQGEI 481 (510)
T ss_pred hCCCEEEECCCCcCc---------ChhHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999865 555566777777777764 8999999999865 8899999999987653
No 313
>PRK13409 putative ATPase RIL; Provisional
Probab=98.87 E-value=1.2e-08 Score=115.68 Aligned_cols=146 Identities=17% Similarity=0.252 Sum_probs=94.6
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc------CHHHHHH--------------HH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE------SVEQIGN--------------RA 259 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee------s~~qi~~--------------R~ 259 (583)
.+-+.+|++++|.|+||+|||||+..+++.+....+.. -...+.|+..+. +..+... .+
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 45679999999999999999999999999876542200 001234443321 2221111 01
Q ss_pred Hhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 007957 260 DRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335 (583)
Q Consensus 260 ~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIl 335 (583)
+.+++.. ..+.-++....++ .+..+-..+|+++++||+++.+ |......+...|.+++++.+.+||+
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tvii 509 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHL---------DVEQRLAVAKAIRRIAEEREATALV 509 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1222210 0011122222222 2233334579999999999865 6777888889999999888999999
Q ss_pred ecccCCccCcCCccchheeccEEEEEeC
Q 007957 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 336 isH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
++|.... +..+||+|+.|++
T Consensus 510 vsHD~~~--------~~~~aDrvivl~~ 529 (590)
T PRK13409 510 VDHDIYM--------IDYISDRLMVFEG 529 (590)
T ss_pred EeCCHHH--------HHHhCCEEEEEcC
Confidence 9999754 7889999999976
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.87 E-value=1.1e-08 Score=104.64 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=85.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCc------cCHHH-HHHHHHhccccccc-------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGE------ESVEQ-IGNRADRMMIATEE------- 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~E------es~~q-i~~R~~rl~i~~~~------- 268 (583)
+.+|++++|.|+||+|||||+..+++.+....|.. -++.+.|+..+ .+..+ +.......++....
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 126 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPK 126 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57899999999999999999999999876542200 00001111111 11111 11000000111000
Q ss_pred --------------cccCCcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 007957 269 --------------LFLYSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333 (583)
Q Consensus 269 --------------i~i~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV 333 (583)
+.-++.....++ +...-..+|+++++|++++.+ |......+...|.+++ +.+.+|
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL---------D~~~~~~l~~~L~~~~-~~g~ti 196 (264)
T PRK13546 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG---------DQTFAQKCLDKIYEFK-EQNKTI 196 (264)
T ss_pred HHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC---------CHHHHHHHHHHHHHHH-HCCCEE
Confidence 000111111221 122223479999999998765 4555667777777775 458999
Q ss_pred EEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 334 IlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|+++|.... +..+||.++.|++++.
T Consensus 197 IiisH~~~~--------i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 197 FFVSHNLGQ--------VRQFCTKIAWIEGGKL 221 (264)
T ss_pred EEEcCCHHH--------HHHHcCEEEEEECCEE
Confidence 999998755 7889999999987764
No 315
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.87 E-value=8.1e-09 Score=118.03 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=53.2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |.....++...|.+++++.|.+||+++|.... +..+||+|++|+.++.
T Consensus 185 ~~P~lLllDEPt~~L---------D~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~--------~~~~adri~vl~~G~i 247 (623)
T PRK10261 185 CRPAVLIADEPTTAL---------DVTIQAQILQLIKVLQKEMSMGVIFITHDMGV--------VAEIADRVLVMYQGEA 247 (623)
T ss_pred CCCCEEEEeCCCCcc---------CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------HHHhCCEEEEeeCCee
Confidence 369999999999876 56667778888888888889999999999754 8899999999987654
No 316
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.86 E-value=8.5e-09 Score=101.11 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=81.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCccC-----------------HHHHHHHHHhcccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEES-----------------VEQIGNRADRMMIA 265 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ees-----------------~~qi~~R~~rl~i~ 265 (583)
+.+|++++|.|+||+|||||+..+++......+.. -++.+.|+..+.. .+......+.+++.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~ 107 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcH
Confidence 57899999999999999999999999876643200 0012444432210 00111111111110
Q ss_pred c---------c-----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHH-HHHHcC
Q 007957 266 T---------E-----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALL-RFAKKT 329 (583)
Q Consensus 266 ~---------~-----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~-~lAk~~ 329 (583)
. + ...-++.....+ .+...-..+|+++++||+++.+ |....+.+...+. .++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L---------D~~~~~~l~~~ll~~~~~~- 177 (204)
T cd03250 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV---------DAHVGRHIFENCILGLLLN- 177 (204)
T ss_pred HHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC---------CHHHHHHHHHHHHHHhccC-
Confidence 0 0 000011111111 2222233479999999998765 4444555666443 44444
Q ss_pred CCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 330 g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+.+||+++|.... +.. +|.++.|+.+
T Consensus 178 ~~tvi~~sh~~~~--------~~~-~d~i~~l~~G 203 (204)
T cd03250 178 NKTRILVTHQLQL--------LPH-ADQIVVLDNG 203 (204)
T ss_pred CCEEEEEeCCHHH--------Hhh-CCEEEEEeCC
Confidence 8999999999754 666 9999999764
No 317
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.3e-08 Score=103.25 Aligned_cols=60 Identities=7% Similarity=0.215 Sum_probs=47.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||++++|+.++.
T Consensus 166 ~p~llllDEP~~gL---------D~~~~~~l~~~l~~~~~--~~tiiivsH~~~~--------~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 166 KPEVILMDEPASAL---------DPISTLKIEELIEELKE--KYTIIIVTHNMQQ--------AARVSDYTAFFYMGDL 225 (252)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHh--CCcEEEEECCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999998765 45556667777777754 4799999998754 7789999999988764
No 318
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=1.6e-08 Score=102.46 Aligned_cols=61 Identities=11% Similarity=0.315 Sum_probs=48.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++.+ +.+||+++|.... +..++|.++.|+.++.
T Consensus 164 ~~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tiiiisH~~~~--------~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 164 VRPKVVLLDEPTSAL---------DPISSSEIEETLMELKH--QYTFIMVTHNLQQ--------AGRISDQTAFLMNGDL 224 (251)
T ss_pred cCCCEEEecCCCccC---------CHHHHHHHHHHHHHHHc--CCeEEEEECCHHH--------HHhhcCEEEEEECCEE
Confidence 369999999998765 55556677777777743 5899999998754 7888999999998764
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=113.91 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=51.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... ++.+||.|++|++++.
T Consensus 412 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-g~tviivtHd~~~--------~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 412 TRPKVLILDEPTRGV---------DVGAKKEIYQLINQFKAE-GLSIILVSSEMPE--------VLGMSDRILVMHEGRI 473 (501)
T ss_pred hCCCEEEEcCCCCCC---------CHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------HHhhCCEEEEEECCEE
Confidence 359999999999866 555667777888888765 9999999999865 8899999999987653
No 320
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=7.9e-09 Score=115.30 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=50.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++...|.++++ .+.+||+++|.... +..+||.|++|+.++.
T Consensus 161 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~--------~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 161 QARLLILDEPTASL---------TESETAVLLDIIRDLKA-HGIACIYISHKLNE--------VKAISDTICVIRDGRH 221 (506)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHH--------HHHhcCEEEEEECCEE
Confidence 59999999999866 56667777888888865 48999999999755 8889999999987664
No 321
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.85 E-value=1.4e-08 Score=104.59 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
+|+++++|++++.+ |......+...|.++. .++|||+++|.... +.. ||+|+.|+.++..
T Consensus 156 ~p~illlDEpts~L---------D~~~~~~l~~~l~~~~--~~~tii~isH~~~~--------i~~-~dri~vl~~G~i~ 215 (275)
T cd03289 156 KAKILLLDEPSAHL---------DPITYQVIRKTLKQAF--ADCTVILSEHRIEA--------MLE-CQRFLVIEENKVR 215 (275)
T ss_pred CCCEEEEECccccC---------CHHHHHHHHHHHHHhc--CCCEEEEEECCHHH--------HHh-CCEEEEecCCeEe
Confidence 59999999998765 4444555666666542 48999999999743 554 9999999887653
No 322
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.85 E-value=1.8e-08 Score=112.72 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.+++|+.++.
T Consensus 445 ~p~lLllDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~--------~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 445 EPRIVILDEPTGTM---------DPITKVDVTHSILKAREEMEQTFIIVSHDMDF--------VLDVCDRAALMRDGKI 506 (520)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999866 66677788888888888889999999999865 8889999999987653
No 323
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.8e-09 Score=104.89 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCccCHHHHHHHHHhcccccccccc---------------
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEESVEQIGNRADRMMIATEELFL--------------- 271 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i--------------- 271 (583)
.++.|.|.+|+|||||+..+++...++.+.. -++.+ +++.+.... +-.-.+++|+...+-.+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~-L~Ds~k~i~-lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV-LVDAEKGIF-LPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEE-eecccCCcc-cChhhheeeeEeeccccccceEEecchhhhhc
Confidence 6999999999999999999999988763310 01112 222221110 11111233433222111
Q ss_pred -CCcccHHHHHHHh------c--------------------ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHH
Q 007957 272 -YSSTDIEDIVEKV------Q--------------------PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR 324 (583)
Q Consensus 272 -~~~~~~e~i~~~i------~--------------------~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~ 324 (583)
....+++++.+.+ . -.+|+++++||+-+.+ |...-+|++-.|.+
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL---------D~~RK~EilpylER 173 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL---------DLPRKREILPYLER 173 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc---------ccchhhHHHHHHHH
Confidence 1122344444432 1 1249999999998755 44556899999999
Q ss_pred HHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 325 FAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.++.+++|+.++|...+ +.++||.|+.|+.++.
T Consensus 174 L~~e~~IPIlYVSHS~~E--------v~RLAd~vV~le~GkV 207 (352)
T COG4148 174 LRDEINIPILYVSHSLDE--------VLRLADRVVVLENGKV 207 (352)
T ss_pred HHHhcCCCEEEEecCHHH--------HHhhhheEEEecCCeE
Confidence 999999999999999977 9999999999998874
No 324
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.7e-08 Score=103.18 Aligned_cols=56 Identities=13% Similarity=0.320 Sum_probs=45.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+++++|++++.+ |.....++...|.++. + +.++|+++|.... +..+||.|++|+
T Consensus 167 ~p~llllDEPtsgL---------D~~~~~~l~~~l~~~~-~-~~tii~isH~~~~--------i~~~~d~v~~l~ 222 (261)
T PRK14263 167 EPEVLLLDEPCSAL---------DPIATRRVEELMVELK-K-DYTIALVTHNMQQ--------AIRVADTTAFFS 222 (261)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHH--------HHHhCCEEEEEe
Confidence 59999999999865 5555667777777774 3 6899999998755 888999999997
No 325
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.85 E-value=1.1e-08 Score=114.00 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=50.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.++++ .|.+||+++|.... +..+||.|+.|++++.
T Consensus 157 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~--------~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 157 RNARVIAFDEPTSSL---------SAREIEQLFRVIRELRA-EGRVILYVSHRMEE--------IFALCDAITVFKDGRY 218 (501)
T ss_pred hCCCEEEEcCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999866 55566777888888765 48999999998755 7889999999987764
No 326
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.84 E-value=1.6e-08 Score=113.37 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=53.2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |......+...|.+++++.+.+||+++|.... +..+||.+++|+.++.
T Consensus 442 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~--------~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 442 LKPSLIILDEPTSSL---------DKTVQAQILALLKSLQQKHQLAYLFISHDLHV--------VRALCHQVIVLRQGEV 504 (529)
T ss_pred CCCCEEEeeCCcccc---------CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH--------HHHhcCeEEEEECCEE
Confidence 359999999999866 66667788888888888779999999999755 8889999999987763
No 327
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=2.5e-08 Score=101.03 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=47.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++. + +.+||+++|.... +..+||+++.|+.++.
T Consensus 167 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~--------~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 167 KPTMLLMDEPCSAL---------DPVATNVIENLIQELK-K-NFTIIVVTHSMKQ--------AKKVSDRVAFFQSGRI 226 (251)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHH--------HHhhcCEEEEEECCEE
Confidence 59999999998765 4444556666777664 3 7999999998755 7889999999998764
No 328
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=2.2e-08 Score=98.60 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=43.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ |.....++...|.+++++ +.+||+++|.... ++. |.++.++.
T Consensus 145 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------~~~--~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAAL---------DAAAVALFAELIRAHLAQ-GGIVIAATHIPLG--------LPG--ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCchh--------hcc--CcEEeecC
Confidence 59999999998765 555666777788777665 9999999999865 454 77777753
No 329
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=102.64 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.+++ + +.++|+++|.... +..+||.++.|+.++.
T Consensus 166 ~p~llllDEP~~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~--------~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 166 EPEILLMDEPTSAL---------DPASTARIEDLMTDLK-K-VTTIIIVTHNMHQ--------AARVSDTTSFFLVGDL 225 (252)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 4555666777777775 3 6899999998755 8889999999988764
No 330
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.6e-08 Score=102.49 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=46.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..++|.++.|++++.
T Consensus 167 ~p~lllLDEP~~gL---------D~~~~~~l~~~l~~~~~--~~tvii~sh~~~~--------~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 167 NPEVILMDEPCSAL---------DPIATAKIEDLIEDLKK--EYTVIIVTHNMQQ--------AARVSDYTGFMYLGKL 226 (253)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHhh--CceEEEEEcCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999998765 44455566666666654 4899999998755 7889999999998764
No 331
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.84 E-value=1.2e-08 Score=112.51 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=86.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-------------cCHHH-HHHH----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-------------ESVEQ-IGNR---------- 258 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-------------es~~q-i~~R---------- 258 (583)
-+.+|++++|.|++|+|||||+..+++.+....| .+ ++.+. .+..+ +...
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-----eI-~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e 119 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-----TV-DIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEK 119 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-----EE-EECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHH
Confidence 4689999999999999999999999998765422 12 22111 11111 1100
Q ss_pred --------HHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 007957 259 --------ADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA 326 (583)
Q Consensus 259 --------~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA 326 (583)
++.+++.. ..+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.+++
T Consensus 120 ~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL---------D~~sr~~LlelL~el~ 190 (549)
T PRK13545 120 IKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG---------DQTFTKKCLDKMNEFK 190 (549)
T ss_pred HHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC---------CHHHHHHHHHHHHHHH
Confidence 01111110 0000111111122 1222233479999999999765 5556667777777775
Q ss_pred HcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 327 KKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 327 k~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.+.+||+++|.... +..+||.++.|+.++.
T Consensus 191 -~~G~TIIIVSHdl~~--------i~~l~DrIivL~~GkI 221 (549)
T PRK13545 191 -EQGKTIFFISHSLSQ--------VKSFCTKALWLHYGQV 221 (549)
T ss_pred -hCCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 458999999998754 8889999999987764
No 332
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.84 E-value=1.9e-08 Score=99.63 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH-HHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA-LLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~-L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |.....++++. +.+..++.+.++|+++|.... +. .+|.++.|+++
T Consensus 158 ~p~illlDEPt~~L---------D~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~--------~~-~~d~i~~l~~G 217 (218)
T cd03290 158 NTNIVFLDDPFSAL---------DIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY--------LP-HADWIIAMKDG 217 (218)
T ss_pred CCCEEEEeCCcccc---------CHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH--------Hh-hCCEEEEecCC
Confidence 59999999999865 44445556652 555556678999999999854 55 59999999754
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.3e-08 Score=113.25 Aligned_cols=62 Identities=8% Similarity=0.226 Sum_probs=50.5
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |......+...|.++++ .+.+||+++|.... +..+||.+++|++++.
T Consensus 151 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~--------~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 151 YNAKIVIMDEPTSSL---------TEKEVNHLFTIIRKLKE-RGCGIVYISHKMEE--------IFQLCDEITILRDGQW 212 (491)
T ss_pred hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999865 55566777777777765 48999999999755 7889999999998764
No 334
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.8e-08 Score=112.45 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+.+.|.+++++ |.+||+++|.... +..+||+++.|++++.
T Consensus 427 ~p~lLlLDEPt~~L---------D~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~--------~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 427 CPEVIIFDEPTRGI---------DVGAKAEIYKVMRQLADD-GKVILMVSSELPE--------IITVCDRIAVFCEGRL 487 (510)
T ss_pred CCCEEEECCCCCCc---------CHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------HHhhCCEEEEEECCEE
Confidence 59999999999865 555667777777777754 8999999999755 8889999999987653
No 335
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.82 E-value=1.9e-08 Score=114.10 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=84.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhcccccc-----------ccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATE-----------ELF 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~-----------~i~ 270 (583)
-+++|+.++|.|++|+|||||+..+++.+.+.. ..+++++.+-.+ ......+.+++-++ |+.
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~------G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE------GEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC------ceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence 368999999999999999999999999887742 245555532111 11111122222111 222
Q ss_pred cCC--cccHHHHHHH----------------------------------------hcccCCCEEEEccchhhhhhcccCC
Q 007957 271 LYS--STDIEDIVEK----------------------------------------VQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 271 i~~--~~~~e~i~~~----------------------------------------i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
+.. ..+-+++.+. .--.+|+++|+||+++.+
T Consensus 439 ~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaL------- 511 (582)
T PRK11176 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL------- 511 (582)
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccC-------
Confidence 210 0111111111 111249999999999866
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....++...|.++. .++|+|+++|... +-+.||.|+.|++++.
T Consensus 512 --D~~t~~~i~~~l~~~~--~~~tvI~VtHr~~---------~~~~~D~Ii~l~~g~i 556 (582)
T PRK11176 512 --DTESERAIQAALDELQ--KNRTSLVIAHRLS---------TIEKADEILVVEDGEI 556 (582)
T ss_pred --CHHHHHHHHHHHHHHh--CCCEEEEEecchH---------HHHhCCEEEEEECCEE
Confidence 4444456777777653 3799999999873 3455999999998764
No 336
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=102.82 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=47.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..++|+++.|+.++.
T Consensus 181 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~--~~tiiivsH~~~~--------~~~~~dri~~l~~G~i 240 (276)
T PRK14271 181 NPEVLLLDEPTSAL---------DPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQ--------AARISDRAALFFDGRL 240 (276)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 45556667777777754 4799999998754 7889999999998764
No 337
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.7e-08 Score=103.46 Aligned_cols=58 Identities=12% Similarity=0.311 Sum_probs=46.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |......+...|.+++ + +.+||+++|.... +..+||.+++|+.+
T Consensus 172 ~p~lllLDEPt~gL---------D~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~--------~~~~~d~i~~l~~~ 229 (269)
T PRK14259 172 EPEVILMDEPCSAL---------DPISTLKIEETMHELK-K-NFTIVIVTHNMQQ--------AVRVSDMTAFFNAE 229 (269)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH--------HHHhcCEEEEEecc
Confidence 59999999998765 5555667777777774 3 6899999998755 88999999999863
No 338
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=4.3e-08 Score=87.37 Aligned_cols=139 Identities=23% Similarity=0.337 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+..++|.|+||+||||++..++..+... ...++|++.+............................+.+.+.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-----GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-----CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999888763 23699999887655433321100111111111122335566677777
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHH-----HHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECT-----SALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~-----~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
.++++++||++..+... ....... ..+.......+..+|+++|. ....++..+....|..+.+
T Consensus 77 ~~~~viiiDei~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 77 LKPDVLILDEITSLLDA---------EQEALLLLLEELRLLLLLKSEKNLTVILTTND---EKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC---CccCchhhhhhccceEEEe
Confidence 77899999999876421 1111111 12344555667888888774 1122334455566666655
Q ss_pred e
Q 007957 362 E 362 (583)
Q Consensus 362 e 362 (583)
.
T Consensus 145 ~ 145 (148)
T smart00382 145 L 145 (148)
T ss_pred c
Confidence 3
No 339
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.7e-08 Score=102.97 Aligned_cols=60 Identities=8% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+.+.|.++++ +.+||+++|.... +..+||++++|+.++.
T Consensus 200 ~p~lllLDEPt~gL---------D~~~~~~l~~~L~~~~~--~~tvIivsH~~~~--------~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 200 EPEILLLDEPTSAL---------DPKATAKIEDLIQELRG--SYTIMIVTHNMQQ--------ASRVSDYTMFFYEGVL 259 (286)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999765 45556667777777654 5899999998754 7889999999997764
No 340
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.7e-08 Score=101.87 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=47.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.++. + +.+||+++|.... +..+||.++.|+.++.
T Consensus 181 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~--------~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 181 KPDILLMDEPASAL---------DPISTMQLEETMFELK-K-NYTIIIVTHNMQQ--------AARASDYTAFFYLGDL 240 (267)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHh-c-CCEEEEEecCHHH--------HHHhcCEEEEEECCEE
Confidence 59999999998765 4555566667777664 3 6899999998754 7789999999998764
No 341
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.81 E-value=2.7e-08 Score=102.18 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+...|.++++ +.+||+++|.... +...||.++.|++++.
T Consensus 186 ~p~lllLDEPt~gL---------D~~~~~~l~~~L~~~~~--~~tiiivtH~~~~--------~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 186 EPEVLLLDEPTSAL---------DPISTLKIEELITELKS--KYTIVIVTHNMQQ--------AARVSDYTAFMYMGKL 245 (272)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh--CCeEEEEeCCHHH--------HHhhCCEEEEEECCEE
Confidence 69999999998765 45556677777777764 5899999999754 7889999999998764
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=98.81 E-value=2.3e-08 Score=113.35 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=49.6
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
.+|+++++||+++.+ |..+...+...|.++++ +.+||+++|.... +.+++|.|++|+++
T Consensus 229 ~~p~lllLDEPts~L---------D~~~~~~l~~~i~~l~~--g~tvIivsHd~~~--------l~~~~D~v~vl~~~ 287 (590)
T PRK13409 229 RDADFYFFDEPTSYL---------DIRQRLNVARLIRELAE--GKYVLVVEHDLAV--------LDYLADNVHIAYGE 287 (590)
T ss_pred cCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH--------HHHhCCEEEEEeCC
Confidence 469999999999866 66677778888888765 8999999999865 89999999999753
No 343
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.81 E-value=2.5e-08 Score=96.66 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=35.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
+|+++++||+++.+ |......+...|.+++++ +.+||+++|...
T Consensus 145 ~p~llllDEPt~~L---------D~~~~~~~~~~l~~~~~~-~~tili~sH~~~ 188 (190)
T TIGR01166 145 RPDVLLLDEPTAGL---------DPAGREQMLAILRRLRAE-GMTVVISTHDVD 188 (190)
T ss_pred CCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence 59999999999765 555667777778777654 899999999763
No 344
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.80 E-value=1.6e-08 Score=116.11 Aligned_cols=136 Identities=19% Similarity=0.295 Sum_probs=88.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|.|++|+|||||++.+++.+.+.. .-+++++-+ +..+++.. +++-..
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~------G~I~~dg~dl~~i~~~~lR~~---ig~V~Q~~~Lf~gSI~e 565 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ------GRILLDGVDLNDIDLASLRRQ---VGYVLQDPFLFSGSIRE 565 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------ceEEECCEeHHhcCHHHHHhh---eeEEcccchhhcCcHHH
Confidence 579999999999999999999999999988753 234444322 22222222 222111
Q ss_pred ccccCC-cccHHHHHH----------------------------------------HhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYS-STDIEDIVE----------------------------------------KVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~-~~~~e~i~~----------------------------------------~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+.. ..+.+++++ ..--.+|+++++||.++-+
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaL----- 640 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL----- 640 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccccc-----
Confidence 111111 111222222 2223469999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-+.+.+.|.++.. |+|+|+++|... .-..||.|++|+.++..
T Consensus 641 ----D~~sE~~I~~~L~~~~~--~~T~I~IaHRl~---------ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 641 ----DPETEAIILQNLLQILQ--GRTVIIIAHRLS---------TIRSADRIIVLDQGKIV 686 (709)
T ss_pred ----CHhHHHHHHHHHHHHhc--CCeEEEEEccch---------HhhhccEEEEccCCcee
Confidence 44445667788877754 689999999874 45569999999988753
No 345
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=4.1e-08 Score=99.33 Aligned_cols=60 Identities=7% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.+++ + +.+||+++|.... +...+|+++++++++.
T Consensus 164 ~p~llllDEP~~gL---------D~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~--------~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 164 SPEVILMDEPCSAL---------DPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQ--------ATRVSKYTSFFLNGEI 223 (250)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHh-c-CCeEEEEECCHHH--------HHhhcCEEEEEECCeE
Confidence 59999999999865 4445566667777664 3 7899999998755 8889999999987664
No 346
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.4e-08 Score=111.52 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=50.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |....+.+.+.|.+++++ |.+||+++|.... ++++||.+++|++++.
T Consensus 423 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~--------~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 423 NPKILILDEPTRGI---------DVGAKYEIYKLINQLVQQ-GVAIIVISSELPE--------VLGLSDRVLVMHEGKL 483 (506)
T ss_pred CCCEEEEcCCCCCc---------CHhHHHHHHHHHHHHHHC-CCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 555667777777777764 9999999999865 8899999999987763
No 347
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.80 E-value=3.1e-08 Score=101.29 Aligned_cols=57 Identities=7% Similarity=0.235 Sum_probs=45.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.|++|++
T Consensus 169 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~--------~~~~~d~v~~l~~ 225 (264)
T PRK14243 169 QPEVILMDEPCSAL---------DPISTLRIEELMHELKE--QYTIIIVTHNMQQ--------AARVSDMTAFFNV 225 (264)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHhc--CCEEEEEecCHHH--------HHHhCCEEEEEec
Confidence 59999999998765 45556667777777754 4799999998755 8999999999983
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.80 E-value=3.2e-08 Score=93.96 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=88.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccc----------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE---------------- 267 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~---------------- 267 (583)
+..|+.+.|.|.+|+|||||++.+++.+.+.. +.+++-+-+--......|++++.+-..
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-----G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-----GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-----ceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 46789999999999999999999999998853 334433222222223333333222110
Q ss_pred --ccccCCc----ccHHHHH------------------------------HHhcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 268 --ELFLYSS----TDIEDIV------------------------------EKVQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 268 --~i~i~~~----~~~e~i~------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
.+.+..+ ...++|. +...-.+|+++|.|+--..+ +
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~L---------D 181 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASL---------D 181 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhc---------c
Confidence 0000000 0011111 22223469999999875433 3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
......+++.+.++-.+.|+.-|.++|.. +.+.|++|.|++|+.++.
T Consensus 182 ~smrsQl~NL~LeLQek~GiSyiYV~Qhl--------G~iKHi~D~viVM~EG~v 228 (267)
T COG4167 182 MSMRSQLINLMLELQEKQGISYIYVTQHI--------GMIKHISDQVLVMHEGEV 228 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCceEEEEechh--------hHhhhhcccEEEEecCce
Confidence 33344566677778889999999999887 459999999999987664
No 349
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.80 E-value=1.1e-08 Score=101.49 Aligned_cols=140 Identities=17% Similarity=0.075 Sum_probs=80.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-------------cCHHH-HHHHHHhcccccccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-------------ESVEQ-IGNRADRMMIATEEL 269 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-------------es~~q-i~~R~~rl~i~~~~i 269 (583)
+.+|++++|.|+||+|||||+..+++......+ .+..+..+ .+..+ +..-....++.....
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG-----~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~ 84 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG-----DFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEF 84 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC-----CEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHH
Confidence 578999999999999999999999988765432 23212211 11111 111111111111000
Q ss_pred -----c-------------cCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 270 -----F-------------LYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 270 -----~-------------i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
. -++.....+ .+...-..+|+++++||+.+.. +....+.+...|.+..++
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l---------D~~~~~~~~~~l~~~~~~-- 153 (213)
T PRK15177 85 SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG---------DNATQLRMQAALACQLQQ-- 153 (213)
T ss_pred HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC---------CHHHHHHHHHHHHHHhhC--
Confidence 0 000000111 1111223479999999987543 444445555556555443
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
.++|+++|.... ++.+||.++.|++++..
T Consensus 154 ~~ii~vsH~~~~--------~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 154 KGLIVLTHNPRL--------IKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CcEEEEECCHHH--------HHHhcCeeEEEECCeEE
Confidence 568999999855 78899999999987654
No 350
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.80 E-value=3.2e-08 Score=96.84 Aligned_cols=122 Identities=15% Similarity=0.222 Sum_probs=71.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccc------------cccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE------------ELFL 271 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~------------~i~i 271 (583)
+.+|++++|.|++|+|||||+..+++...... .-+++.++............+++-.+ ++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~------G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~ 97 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK------GEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY 97 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------eeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHH
Confidence 47899999999999999999999998876542 23455554321100011111111110 0000
Q ss_pred C---C--cccHHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHH
Q 007957 272 Y---S--STDIEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTS 320 (583)
Q Consensus 272 ~---~--~~~~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~ 320 (583)
. . ...+.++++. .-..+|+++++||+++.+ |......+..
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L---------D~~~~~~l~~ 168 (200)
T PRK13540 98 DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL---------DELSLLTIIT 168 (200)
T ss_pred HHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc---------CHHHHHHHHH
Confidence 0 0 0011111111 112259999999998765 5556667777
Q ss_pred HHHHHHHcCCCcEEEecccCC
Q 007957 321 ALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 321 ~L~~lAk~~g~tVIlisH~~k 341 (583)
.|.++++ .+.++|+++|...
T Consensus 169 ~l~~~~~-~~~tiii~sh~~~ 188 (200)
T PRK13540 169 KIQEHRA-KGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHH-cCCEEEEEeCCch
Confidence 7777754 4899999999864
No 351
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=2.8e-08 Score=100.63 Aligned_cols=60 Identities=13% Similarity=0.308 Sum_probs=48.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.++|+++|.... +...||.++.|++++.
T Consensus 166 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tii~vsH~~~~--------~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 166 KPDVILLDEPTSAL---------DPISSTQIENMLLELRD--QYTIILVTHSMHQ--------ASRISDKTAFFLTGNL 225 (252)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHHh--CCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 69999999999865 55556677777777754 4799999999754 7889999999988764
No 352
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.3e-08 Score=101.06 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=48.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||+++.|+.++.
T Consensus 179 ~p~llllDEPt~gL---------D~~~~~~l~~~l~~l~~--~~tiiivth~~~~--------~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 179 DPEILLFDEPTSAL---------DPIATASIEELISDLKN--KVTILIVTHNMQQ--------AARVSDYTAYMYMGEL 238 (265)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHh--CCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 45556667777777754 5899999998755 7889999999987764
No 353
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.79 E-value=2.4e-08 Score=115.41 Aligned_cols=133 Identities=18% Similarity=0.326 Sum_probs=82.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.+.. .-+++++.+ +.+.++.. +++-+ +
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~------G~I~idg~~i~~~~~~~lr~~---i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES------GSVFYDGQDLAGLDVQAVRRQ---LGVVLQNGRLMSGSIFE 545 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC------CEEEECCEEcCcCCHHHHHhc---cEEEccCCccCcccHHH
Confidence 368999999999999999999999999987753 234555432 22233222 11111 1
Q ss_pred ccccCCcccHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYSSTDIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~~~~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+.+..+.+.+++. ...--.+|+++++||+++-+
T Consensus 546 Ni~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L------ 619 (686)
T TIGR03797 546 NIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL------ 619 (686)
T ss_pred HHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC------
Confidence 11111101111111 11111359999999999765
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-+.+.+.|.++ +.|+|+++|.... ++. ||.|+.|++++.
T Consensus 620 ---D~~te~~i~~~L~~~----~~T~IiItHr~~~--------i~~-~D~Iivl~~G~i 662 (686)
T TIGR03797 620 ---DNRTQAIVSESLERL----KVTRIVIAHRLST--------IRN-ADRIYVLDAGRV 662 (686)
T ss_pred ---CHHHHHHHHHHHHHh----CCeEEEEecChHH--------HHc-CCEEEEEECCEE
Confidence 344445566666554 5799999998743 554 999999998764
No 354
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.5e-08 Score=109.72 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=48.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+.+.|..+++ .+.+||+++|.... ++.+||++++|+.++.
T Consensus 408 ~~p~illLDEPt~gL---------D~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~--------~~~~~d~v~~l~~g~i 469 (491)
T PRK10982 408 TQPEILMLDEPTRGI---------DVGAKFEIYQLIAELAK-KDKGIIIISSEMPE--------LLGITDRILVMSNGLV 469 (491)
T ss_pred cCCCEEEEcCCCccc---------ChhHHHHHHHHHHHHHH-CCCEEEEECCChHH--------HHhhCCEEEEEECCEE
Confidence 469999999999865 44455566666666655 49999999999865 8899999999987653
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=3e-08 Score=113.66 Aligned_cols=142 Identities=21% Similarity=0.265 Sum_probs=87.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc----CHH-HHHHH----------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE----SVE-QIGNR---------------- 258 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee----s~~-qi~~R---------------- 258 (583)
-+.+|++++|.|+||+|||||+..+++.+.+..|. +.+.++.|+.-.. ... .+...
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDY 413 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHH
Confidence 56899999999999999999999999987654331 1123466766431 000 11110
Q ss_pred HHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 007957 259 ADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333 (583)
Q Consensus 259 ~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV 333 (583)
+.++++... .+..++.....+ .+..+-..+|+++|+|+|++.+ |......+...|.++ +.||
T Consensus 414 L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L---------D~~~~~~l~~~L~~~----~gtv 480 (638)
T PRK10636 414 LGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL---------DLDMRQALTEALIDF----EGAL 480 (638)
T ss_pred HHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---------CHHHHHHHHHHHHHc----CCeE
Confidence 122222110 011112111122 2222334579999999999865 455555566666554 4599
Q ss_pred EEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 334 IlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
|+++|.... +..+||.+++|+.+.
T Consensus 481 i~vSHd~~~--------~~~~~d~i~~l~~G~ 504 (638)
T PRK10636 481 VVVSHDRHL--------LRSTTDDLYLVHDGK 504 (638)
T ss_pred EEEeCCHHH--------HHHhCCEEEEEECCE
Confidence 999999855 889999999998765
No 356
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.78 E-value=2.3e-08 Score=101.26 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=49.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.++++ .+.+||+++|.... ++.. +|.++.|++++
T Consensus 168 ~~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~--------~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 168 LDSELAILDETDSGL---------DIDALKIIAEGINKLMT-SENSIILITHYQRL--------LDYIKPDYVHVMQNGK 229 (252)
T ss_pred cCCCEEEEcCCcccC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--------HHhhhCCEEEEEeCCE
Confidence 479999999998765 56666777778877765 58999999998643 5555 89999998776
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 230 i 230 (252)
T CHL00131 230 I 230 (252)
T ss_pred E
Confidence 4
No 357
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.78 E-value=2.6e-08 Score=110.96 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=50.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+.+.|.++++ .|.+||+++|.... +..+||.|++|++++.
T Consensus 158 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~-~g~tviiitHd~~~--------~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 158 KQARLLILDEPSSSL---------TEKETEILLDIIRDLKA-HGVACVYISHKLNE--------VKAVCDTICVIRDGQH 219 (500)
T ss_pred hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH--------HHHhCCEEEEEeCCeE
Confidence 359999999999866 56667777788888765 59999999999755 8889999999987654
No 358
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=3.6e-08 Score=100.52 Aligned_cols=60 Identities=12% Similarity=0.387 Sum_probs=47.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.++.. +.+||+++|.... +...||.++.|+.++.
T Consensus 171 ~P~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tiilvsh~~~~--------~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 171 KPKVLLMDEPTSMI---------DIVNSQAIEKLITELKN--EIAIVIVSHNPQQ--------VARVADYVAFLYNGEL 230 (257)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHhc--CcEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999865 44455666777776643 5899999999754 7789999999987664
No 359
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.77 E-value=1.4e-08 Score=107.12 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++.++.+.|+|+++|...+ +..+||.|++|++++.
T Consensus 118 ~p~lllLDEP~s~L---------D~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e--------~~~~~d~i~vl~~G~i 179 (325)
T TIGR01187 118 KPKILLLDEPLSAL---------DKKLRDQMQLELKTIQEQLGITFVFVTHDQEE--------AMTMSDRIAIMRKGKI 179 (325)
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 55556677778888888889999999998755 7889999999998764
No 360
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=4.3e-08 Score=110.08 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=45.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...| ++.+.+||+++|.... +..+||.|++|+.++.
T Consensus 172 ~~p~lLlLDEPt~~L---------D~~~~~~l~~~l----~~~~~tiiivsHd~~~--------~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 172 SNPDILLLDEPTNNL---------DINTIRWLEDVL----NERNSTMIIISHDRHF--------LNSVCTHMADLDYGEL 230 (530)
T ss_pred cCCCEEEEcCCCccc---------CHHHHHHHHHHH----HhCCCeEEEEeCCHHH--------HHhhcceEEEEeCCEE
Confidence 479999999999876 333344444444 3468999999999855 8899999999997764
No 361
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.77 E-value=7.1e-08 Score=97.38 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.++++ .+.|||+++|.... ++.. +|.++.|+.++
T Consensus 162 ~~p~illLDEPt~~L---------D~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~--------~~~~~~d~i~~l~~g~ 223 (248)
T PRK09580 162 LEPELCILDESDSGL---------DIDALKIVADGVNSLRD-GKRSFIIVTHYQRI--------LDYIKPDYVHVLYQGR 223 (248)
T ss_pred cCCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HHhhhCCEEEEEECCe
Confidence 369999999999865 55556677777777754 58999999998744 6666 89999998765
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 224 i 224 (248)
T PRK09580 224 I 224 (248)
T ss_pred E
Confidence 3
No 362
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.77 E-value=2.9e-08 Score=110.65 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |.....+++..|.++++ .|.+||+++|.... ++.+||.++.|++++
T Consensus 414 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~-~g~tviivsHd~~~--------~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 414 DMKVILLDEPTRGI---------DVGAKHEIYNVIYELAA-QGVAVLFVSSDLPE--------VLGVADRIVVMREGR 473 (501)
T ss_pred CCCEEEEcCCCCCC---------CHhHHHHHHHHHHHHHh-CCCEEEEECCCHHH--------HHhhCCEEEEEECCE
Confidence 59999999999765 55666777777777765 48999999999865 889999999998765
No 363
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.77 E-value=2.4e-08 Score=111.20 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |....+.+...|.+++++ |.+||+++|.... ++.+||+++.|+.++
T Consensus 421 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~l~~~-g~tviivsHd~~~--------~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 421 NPRVLILDEPTRGV---------DVGAKYEIYKLINQLAQE-GVAIIVVSSELAE--------VLGLSDRVLVIGEGK 480 (500)
T ss_pred CCCEEEEcCCCCCc---------CHhHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------HHHhCCEEEEEECCE
Confidence 59999999999865 455566677777777665 8999999999865 889999999998765
No 364
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=4.4e-08 Score=100.77 Aligned_cols=57 Identities=11% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++|+||+++.+ |......+...|.++++ +.+||+++|.... +..+||.+++|++
T Consensus 179 ~p~lllLDEPt~~L---------D~~~~~~l~~~L~~~~~--~~tiii~sH~~~~--------~~~~~d~i~~l~~ 235 (274)
T PRK14265 179 KPDVLLMDEPCSAL---------DPISTRQVEELCLELKE--QYTIIMVTHNMQQ--------ASRVADWTAFFNT 235 (274)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------HHHhCCEEEEEec
Confidence 59999999999865 55566677777777753 5899999999855 8889999999973
No 365
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=4.6e-08 Score=99.65 Aligned_cols=57 Identities=9% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.+++|+.
T Consensus 168 ~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tiii~tH~~~~--------i~~~~d~i~~l~~ 224 (259)
T PRK14260 168 KPKVLLMDEPCSAL---------DPIATMKVEELIHSLRS--ELTIAIVTHNMQQ--------ATRVSDFTAFFST 224 (259)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------HHHhcCeEEEEec
Confidence 59999999999765 45556667777777653 5899999998765 8899999999974
No 366
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.76 E-value=2.8e-08 Score=113.01 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=83.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.+..| .+++++.+ +.+.++.+ +++-+ +
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G------~I~idg~~i~~~~~~~l~~~---i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG------EIRLDGRPLSSLSHSVLRQG---VAMVQQDPVVLADTFLA 433 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc------eEEECCEEhhhCCHHHHHhh---eEEEccCCccccchHHH
Confidence 3689999999999999999999999998877532 34444432 11122221 11111 1
Q ss_pred ccccCCc---c------------------------------------cHHHHH-HHhcccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYSS---T------------------------------------DIEDIV-EKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~~---~------------------------------------~~e~i~-~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+.+..+ . ..+++. ...--.+|+++++||+++-+
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~L------ 507 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI------ 507 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC------
Confidence 1111110 0 111110 11111258999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-+.+.+.|.++.+ ++|+|+++|.... +. .+|.|+.|++++..
T Consensus 508 ---D~~t~~~i~~~l~~~~~--~~tvIivtHr~~~--------l~-~~D~ii~l~~G~i~ 553 (592)
T PRK10790 508 ---DSGTEQAIQQALAAVRE--HTTLVVIAHRLST--------IV-EADTILVLHRGQAV 553 (592)
T ss_pred ---CHHHHHHHHHHHHHHhC--CCEEEEEecchHH--------HH-hCCEEEEEECCEEE
Confidence 44445566777776643 6899999998742 44 59999999987753
No 367
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.75 E-value=4.5e-08 Score=99.61 Aligned_cols=57 Identities=9% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ |......+...|.++++ +.+||+++|.... +..+||.++.|+.
T Consensus 166 ~p~llllDEPt~~L---------D~~~~~~l~~~l~~~~~--~~tviivsH~~~~--------~~~~~d~i~~l~~ 222 (258)
T PRK14241 166 EPDVLLMDEPCSAL---------DPISTLAIEDLINELKQ--DYTIVIVTHNMQQ--------AARVSDQTAFFNL 222 (258)
T ss_pred CCCEEEEcCCCccC---------CHHHHHHHHHHHHHHhc--CCEEEEEecCHHH--------HHHhCCEEEEEec
Confidence 59999999999765 45556677777777753 5899999998754 7889999999974
No 368
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=4.9e-08 Score=101.08 Aligned_cols=61 Identities=13% Similarity=0.316 Sum_probs=46.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEE-EEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVL-YMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl-~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.+++++ .+||+++|.... +..++|+++ +|+.++
T Consensus 197 ~~p~lLLLDEPts~L---------D~~~~~~l~~~L~~~~~~--~tiii~tH~~~~--------i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 197 PDPEVILMDEPASAL---------DPVATSKIEDLIEELAEE--YTVVIVTHNMQQ--------AARISDKTAVFLTGGE 257 (285)
T ss_pred cCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHhcC--CEEEEEeCCHHH--------HHhhcCEEEEEeeCCE
Confidence 369999999998765 555566777888888653 799999998754 788999975 567665
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 258 i 258 (285)
T PRK14254 258 L 258 (285)
T ss_pred E
Confidence 3
No 369
>PLN03211 ABC transporter G-25; Provisional
Probab=98.74 E-value=3.9e-08 Score=112.87 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+++.|+++++ .|.|||+++|.... .+.+++|.++.|++++.
T Consensus 224 ~P~iLlLDEPtsgL---------D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~-------~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 224 NPSLLILDEPTSGL---------DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSS-------RVYQMFDSVLVLSEGRC 285 (659)
T ss_pred CCCEEEEeCCCCCc---------CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCH-------HHHHhhceEEEecCCcE
Confidence 59999999999865 55566788888888887 48999999998741 26789999999987754
No 370
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.74 E-value=3.2e-08 Score=114.82 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=82.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.+.. ..+++++.+ +.+.++.+ +++-+ +
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~------G~I~idg~~i~~~~~~~lr~~---i~~v~Q~~~lf~gTi~e 571 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS------GEILFDGIPREEIPREVLANS---VAMVDQDIFLFEGTVRD 571 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------cEEEECCEeHHHCCHHHHHhh---eeEEecCChhhhccHHH
Confidence 368999999999999999999999999987752 345555432 11222221 22111 1
Q ss_pred ccccCC-cccHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYS-STDIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~-~~~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+.. ..+.+++. ...--.+|+++++||+++-+
T Consensus 572 Ni~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L----- 646 (710)
T TIGR03796 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL----- 646 (710)
T ss_pred HhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC-----
Confidence 221111 11111111 11111259999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.+ .++|+|+++|.... +.. ||.|+.|++++.
T Consensus 647 ----D~~te~~i~~~l~~----~~~T~IiitHrl~~--------i~~-~D~Iivl~~G~i 689 (710)
T TIGR03796 647 ----DPETEKIIDDNLRR----RGCTCIIVAHRLST--------IRD-CDEIIVLERGKV 689 (710)
T ss_pred ----CHHHHHHHHHHHHh----cCCEEEEEecCHHH--------HHh-CCEEEEEeCCEE
Confidence 34444556666653 58999999999743 544 999999998764
No 371
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.74 E-value=3.8e-08 Score=100.19 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.++ + .+.++|+++|.... +.. ||+++.|++++.
T Consensus 174 ~p~llllDEPt~gL---------D~~~~~~l~~~l~~~-~-~~~tiii~sh~~~~--------~~~-~dri~~l~~G~i 232 (257)
T cd03288 174 KSSILIMDEATASI---------DMATENILQKVVMTA-F-ADRTVVTIAHRVST--------ILD-ADLVLVLSRGIL 232 (257)
T ss_pred CCCEEEEeCCccCC---------CHHHHHHHHHHHHHh-c-CCCEEEEEecChHH--------HHh-CCEEEEEECCEE
Confidence 59999999999765 344445556666654 3 37999999999865 655 999999998764
No 372
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.74 E-value=5.6e-08 Score=112.84 Aligned_cols=134 Identities=17% Similarity=0.236 Sum_probs=82.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.+.. ..+++++.+ +.++++.+ +++-+ +
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~------G~I~idg~~i~~~~~~~lr~~---i~~v~Q~~~lf~gTI~e 566 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS------GEILLNGFSLKDIDRHTLRQF---INYLPQEPYIFSGSILE 566 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCC------cEEEECCEEHHHcCHHHHHHh---eEEEecCceehhHHHHH
Confidence 368999999999999999999999999887652 244555432 22222221 12111 1
Q ss_pred ccccC--CcccHHHHHH----------------------------------------HhcccCCCEEEEccchhhhhhcc
Q 007957 268 ELFLY--SSTDIEDIVE----------------------------------------KVQPLSPRALIIDSIQTVYLRGV 305 (583)
Q Consensus 268 ~i~i~--~~~~~e~i~~----------------------------------------~i~~~~p~lVVIDsi~~l~~~~~ 305 (583)
|+.+. ...+.+++.+ ..--.+|+++++||+++-+
T Consensus 567 Ni~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~L---- 642 (708)
T TIGR01193 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL---- 642 (708)
T ss_pred HHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccC----
Confidence 12111 0011111111 1111259999999999765
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.++ .+.|+|+++|.... + ..||.|+.|+.++.
T Consensus 643 -----D~~te~~i~~~L~~~---~~~T~IiitHr~~~--------~-~~~D~i~~l~~G~i 686 (708)
T TIGR01193 643 -----DTITEKKIVNNLLNL---QDKTIIFVAHRLSV--------A-KQSDKIIVLDHGKI 686 (708)
T ss_pred -----CHHHHHHHHHHHHHh---cCCEEEEEecchHH--------H-HcCCEEEEEECCEE
Confidence 333445566666653 37899999998743 4 46999999998764
No 373
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.73 E-value=3.4e-08 Score=111.30 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=85.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----CC----------CccEEEEeCccC--------------HHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----GE----------PSPVVYVSGEES--------------VEQ 254 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~~----------~~~VLyis~Ees--------------~~q 254 (583)
-+++|+.++|.|++|+|||||+..+++.+.+..|. +. ...+.|+.-+.. .++
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHH
Confidence 36899999999999999999999999887664320 00 012333322110 011
Q ss_pred HHHHHHhcccccc-----cc---ccCCcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHH
Q 007957 255 IGNRADRMMIATE-----EL---FLYSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325 (583)
Q Consensus 255 i~~R~~rl~i~~~-----~i---~i~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~l 325 (583)
+..-++++++... .. .-++....+++ +...--.+|+++++||+++.+ |......+.+.|.+.
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L---------D~~~~~~i~~~l~~~ 495 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ---------DPHFRREFYQVLLPL 495 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC---------CHHHHHHHHHHHHHH
Confidence 1111222222110 00 00111112221 122223479999999999765 444445666677666
Q ss_pred HHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.++.+.|+|+++|... .-..+|.++.|+.++.
T Consensus 496 ~~~~~~tvi~itH~~~---------~~~~~d~i~~l~~G~i 527 (547)
T PRK10522 496 LQEMGKTIFAISHDDH---------YFIHADRLLEMRNGQL 527 (547)
T ss_pred HHhCCCEEEEEEechH---------HHHhCCEEEEEECCEE
Confidence 5556899999999863 3457999999987764
No 374
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.73 E-value=4.2e-08 Score=111.43 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=82.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+ +..| -+++++.+ +.++++.. +++-+ +
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G------~I~i~g~~i~~~~~~~lr~~---i~~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG------SLKINGIELRELDPESWRKH---LSWVGQNPQLPHGTLRD 441 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc------EEEECCEecccCCHHHHHhh---eEEecCCCcCCCcCHHH
Confidence 36899999999999999999999999988 5422 33444421 22333222 22111 1
Q ss_pred ccccCCc-ccHHHHHHH----------------------------------------hcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYSS-TDIEDIVEK----------------------------------------VQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~~-~~~e~i~~~----------------------------------------i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+..+ .+-+++.+. .--.+|+++|+||+++-+
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL----- 516 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL----- 516 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC-----
Confidence 2221110 111111111 111259999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-+.+.+.|.++. .+.|+|+++|.... +. .||.|+.|++++.
T Consensus 517 ----D~~te~~i~~~l~~~~--~~~TvIiItHrl~~--------i~-~aD~Iivl~~G~i 561 (588)
T PRK11174 517 ----DAHSEQLVMQALNAAS--RRQTTLMVTHQLED--------LA-QWDQIWVMQDGQI 561 (588)
T ss_pred ----CHHHHHHHHHHHHHHh--CCCEEEEEecChHH--------HH-hCCEEEEEeCCeE
Confidence 4444456666776664 37899999998742 44 5999999998764
No 375
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.73 E-value=5.2e-08 Score=110.17 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++-+ |....+.+.+.|.++++ +.|+|+++|... +-+.||.|+.|+.++.
T Consensus 487 ~~~illLDEpts~L---------D~~~~~~i~~~L~~~~~--~~tiIiitH~~~---------~~~~~D~ii~l~~g~i 545 (571)
T TIGR02203 487 DAPILILDEATSAL---------DNESERLVQAALERLMQ--GRTTLVIAHRLS---------TIEKADRIVVMDDGRI 545 (571)
T ss_pred CCCEEEEeCccccC---------CHHHHHHHHHHHHHHhC--CCEEEEEehhhH---------HHHhCCEEEEEeCCEE
Confidence 58999999999865 44445567777776643 689999999974 4567999999987653
No 376
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.9e-08 Score=110.69 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=45.4
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
..+|+++++|||++.+ |...+. .|.++.++++.+||+++|.... +..+||.++.|++++
T Consensus 165 ~~~P~lLLLDEPtn~L---------D~~~~~----~L~~~L~~~~~tviivsHd~~~--------l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 165 ICRSDLLLLDEPTNHL---------DLDAVI----WLEKWLKSYQGTLILISHDRDF--------LDPIVDKIIHIEQQS 223 (638)
T ss_pred ccCCCEEEEcCCCCcC---------CHHHHH----HHHHHHHhCCCeEEEEeCCHHH--------HHHhcCEEEEEeCCE
Confidence 3479999999999866 333333 3444445567899999999865 889999999999776
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 224 i 224 (638)
T PRK10636 224 L 224 (638)
T ss_pred E
Confidence 4
No 377
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.72 E-value=5.3e-08 Score=108.26 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=50.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhe-eccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH-IVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~-~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |....+.+...|.+++++.+.+||+++|.... +.. ++|.+++|++++.
T Consensus 419 ~p~lllLDEPt~gL---------D~~~~~~l~~~L~~l~~~~~~tviivsHd~~~--------~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 419 HPTLLILDEPLQGL---------DPLNRQLVRRFVDVLISEGETQLLFVSHHAED--------APACITHRLEFVPDGDI 481 (490)
T ss_pred CCCEEEEcCccccC---------CHHHHHHHHHHHHHHHhcCCcEEEEEecchhh--------hhhhhheeEEEecCCce
Confidence 59999999999865 66677888888888887755679999999865 665 6999999987753
No 378
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.71 E-value=1.3e-07 Score=97.72 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=81.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc-----CH-HHH-----------HHHHHhcccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE-----SV-EQI-----------GNRADRMMIA 265 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee-----s~-~qi-----------~~R~~rl~i~ 265 (583)
+.+|++++|.|+||+|||||+..+++.+....+.. -++.+.|+.-+. +. +.+ ...+..+++.
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~ 139 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLE 139 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCH
Confidence 57999999999999999999999999876542200 001244544321 10 000 1111111111
Q ss_pred c--cc------------cccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 266 T--EE------------LFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 266 ~--~~------------i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
. .. ..-++.....+ .+...-..+|+++|+|++++.+ |......+...+....++ +
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL---------D~~~~~~l~~~ll~~~~~-~ 209 (282)
T cd03291 140 EDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL---------DVFTEKEIFESCVCKLMA-N 209 (282)
T ss_pred HHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC---------CHHHHHHHHHHHHHHhhC-C
Confidence 0 00 00111111122 2222233479999999998765 444444455544333333 7
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+||+++|.... +. .||.+++|+.++.
T Consensus 210 ~tIiiisH~~~~--------~~-~~d~i~~l~~G~i 236 (282)
T cd03291 210 KTRILVTSKMEH--------LK-KADKILILHEGSS 236 (282)
T ss_pred CEEEEEeCChHH--------HH-hCCEEEEEECCEE
Confidence 899999998754 43 6999999988764
No 379
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.71 E-value=7.8e-08 Score=108.88 Aligned_cols=135 Identities=17% Similarity=0.254 Sum_probs=82.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+.+|+.++|.|++|+|||||+..+++.+.... ..+++++.+ +...++.. +++-+ +
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~------G~I~i~g~~i~~~~~~~~~~~---i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS------GRILLDGVDLRQLDPAELRAR---MALVPQDPVLFAASVME 432 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCC------CEEEECCEEHHhcCHHHHHHh---ceEEccCCccccccHHH
Confidence 468999999999999999999999999987642 234444422 11122211 11111 1
Q ss_pred ccccCCc-ccHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYSS-TDIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~~-~~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+..+ .+-+++. ...--.+|+++++||+++-+
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l----- 507 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL----- 507 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc-----
Confidence 1111100 0001110 11111258999999999765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++. .+.|+|+++|.... + ..+|.|+.++.++.
T Consensus 508 ----D~~~~~~i~~~l~~~~--~~~t~IiitH~~~~--------~-~~~d~vi~l~~g~~ 552 (576)
T TIGR02204 508 ----DAESEQLVQQALETLM--KGRTTLIIAHRLAT--------V-LKADRIVVMDQGRI 552 (576)
T ss_pred ----CHHHHHHHHHHHHHHh--CCCEEEEEecchHH--------H-HhCCEEEEEECCEE
Confidence 3333445666777664 37899999998743 4 46999999998764
No 380
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=8.2e-08 Score=107.78 Aligned_cols=142 Identities=15% Similarity=0.285 Sum_probs=85.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc--------CHHH-HH-------------H
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE--------SVEQ-IG-------------N 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee--------s~~q-i~-------------~ 257 (583)
-+.+|++++|.|+||+|||||+..+++.+....+. ....++.|+.-+. +..+ +. .
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 420 (530)
T PRK15064 341 LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG 420 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH
Confidence 46899999999999999999999999887654321 0112455654331 1111 11 0
Q ss_pred HHHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCc
Q 007957 258 RADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP 332 (583)
Q Consensus 258 R~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~t 332 (583)
.+.++++... .+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.++ +.+
T Consensus 421 ~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~----~~t 487 (530)
T PRK15064 421 TLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM---------DMESIESLNMALEKY----EGT 487 (530)
T ss_pred HHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---------CHHHHHHHHHHHHHC----CCE
Confidence 1122222100 000111111111 2222333479999999999865 444455555555443 569
Q ss_pred EEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 333 VLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 333 VIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
||+++|.... +..+||.++.|+.++
T Consensus 488 vi~vsHd~~~--------~~~~~d~i~~l~~g~ 512 (530)
T PRK15064 488 LIFVSHDREF--------VSSLATRIIEITPDG 512 (530)
T ss_pred EEEEeCCHHH--------HHHhCCEEEEEECCe
Confidence 9999999855 888999999998765
No 381
>PLN03073 ABC transporter F family; Provisional
Probab=98.70 E-value=7.8e-08 Score=111.23 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=45.2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...| ++++.+||+++|.... +..+||.++.|+.++.
T Consensus 361 ~~p~lLlLDEPt~~L---------D~~~~~~l~~~L----~~~~~tviivsHd~~~--------l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 361 IEPDLLLLDEPTNHL---------DLHAVLWLETYL----LKWPKTFIVVSHAREF--------LNTVVTDILHLHGQKL 419 (718)
T ss_pred cCCCEEEEECCCCCC---------CHHHHHHHHHHH----HHcCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 369999999999876 444444444444 4458899999999755 8899999999987654
No 382
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.70 E-value=6e-08 Score=109.49 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=82.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhcccccccccc-------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATEELFL------- 271 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~~i~i------- 271 (583)
-+++|+.++|.|++|+|||||+..+++.+.... ..+++++++. ..+++.. +++...+.++
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~------G~i~~~g~~i~~~~~~~~~~~---i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE------GEILLDGAAVSADSRDDYRDL---FSAIFADFHLFDDLIGP 434 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC------cEEEECCEECCCCCHHHHHhh---CcEEccChhhhhhhhhc
Confidence 468999999999999999999999998877642 2344554321 1222211 1111111000
Q ss_pred ------------------------------------CCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 272 ------------------------------------YSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 272 ------------------------------------~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
++....++ .+...--.+|+++|+||+++.+ |...
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~L---------D~~~ 505 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQ---------DPAF 505 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC---------CHHH
Confidence 00001111 1111112359999999999765 4444
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.+.+.+.+..+..+.|+|+++|... .-..||.|+.|++++.
T Consensus 506 ~~~i~~~l~~~~~~~~~tiiiisH~~~---------~~~~~d~i~~l~~G~i 548 (555)
T TIGR01194 506 KRFFYEELLPDLKRQGKTIIIISHDDQ---------YFELADQIIKLAAGCI 548 (555)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccHH---------HHHhCCEEEEEECCEE
Confidence 455556565444556899999999763 3347999999998764
No 383
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.69 E-value=1.1e-07 Score=91.10 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=88.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC---HHHHHHHHHhccccccccccCCc-----
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES---VEQIGNRADRMMIATEELFLYSS----- 274 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees---~~qi~~R~~rl~i~~~~i~i~~~----- 274 (583)
-+++|+++-|+|++|+|||||++.+.....+.. +.+.+...+-+ ..++-.--+++|+..+++.++..
T Consensus 24 ~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~-----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvye 98 (223)
T COG2884 24 HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR-----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYE 98 (223)
T ss_pred eecCceEEEEECCCCCCHHHHHHHHHhhhcCCC-----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhh
Confidence 468999999999999999999999988877652 23333322211 11111111233433333222111
Q ss_pred ------------------------------------------ccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 275 ------------------------------------------TDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 275 ------------------------------------------~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
.+-++ .++..--.+|++++-||++.-+ |
T Consensus 99 NVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNL---------D 169 (223)
T COG2884 99 NVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL---------D 169 (223)
T ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCC---------C
Confidence 01111 1111223469999999998544 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+....++++.|.++-+ .|.||++.+|... .+..+-.+++.|+.++.
T Consensus 170 p~~s~~im~lfeeinr-~GtTVl~ATHd~~--------lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 170 PDLSWEIMRLFEEINR-LGTTVLMATHDLE--------LVNRMRHRVLALEDGRL 215 (223)
T ss_pred hHHHHHHHHHHHHHhh-cCcEEEEEeccHH--------HHHhccCcEEEEeCCEE
Confidence 5556778877777754 6999999999874 37888889999998764
No 384
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.69 E-value=3.2e-07 Score=87.78 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhcccc-ccccccCCcccHHHHHHHhcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIA-TEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~-~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+++|.|++|+|||+|+.+++.. . +.+++|++..++.+ ++..|.++.... ...+... ....++.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~-----~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~--E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---L-----GGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI--ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---c-----CCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe--ecHHHHHHHHHh
Confidence 4789999999999999999765 2 46899999887643 355554332111 1222111 223345555544
Q ss_pred c-CCCEEEEccchhhhhhcccCCCC-CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcC-Cc-------------cc
Q 007957 287 L-SPRALIIDSIQTVYLRGVAGSAG-GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA-GP-------------RV 350 (583)
Q Consensus 287 ~-~p~lVVIDsi~~l~~~~~~~~~g-~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~a-g~-------------~~ 350 (583)
. ++++|+||+++.+.........+ ....+.+.+..|.+..++.+.++|+++.....|-+. .+ ..
T Consensus 71 ~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 71 LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred cCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3 67899999998876655432111 012244555666666667888888887544333211 11 36
Q ss_pred hheeccEEEEEeCc
Q 007957 351 LEHIVDAVLYMEGE 364 (583)
Q Consensus 351 Le~~aD~Vl~Le~~ 364 (583)
+...||.|..+-.+
T Consensus 151 la~~ad~v~~vv~G 164 (169)
T cd00544 151 LAALADEVYLVVSG 164 (169)
T ss_pred HHHHCCEEEEEECC
Confidence 77789998887543
No 385
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=1.1e-07 Score=92.57 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=28.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+.+|++++|.|+||+|||||+..+++.....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPS 53 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 5789999999999999999999999987654
No 386
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.69 E-value=6.6e-08 Score=107.68 Aligned_cols=143 Identities=21% Similarity=0.241 Sum_probs=91.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCccCHH-----------------HHHHHHHh-
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEESVE-----------------QIGNRADR- 261 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ees~~-----------------qi~~R~~r- 261 (583)
-+.+|+-++|.|+||+|||||+..+++......+. ..+.++-|+.-+.... ++..+++.
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~ 104 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEA 104 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHH
Confidence 46889999999999999999999999998765442 1234688887654322 11111111
Q ss_pred -------------------------------------cccccc--ccccCCc-ccHHHHHHHhcccCCCEEEEccchhhh
Q 007957 262 -------------------------------------MMIATE--ELFLYSS-TDIEDIVEKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 262 -------------------------------------l~i~~~--~i~i~~~-~~~e~i~~~i~~~~p~lVVIDsi~~l~ 301 (583)
+++... .+.-++. ....-.+..+--.+||++++|||++-+
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL 184 (530)
T COG0488 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 (530)
T ss_pred HHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 111110 0000000 001223333344579999999999865
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 302 LRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 302 ~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|. +-+..|.++.+++..++|+|||...- |..+|+.|+.++++..
T Consensus 185 ---------D~----~~i~WLe~~L~~~~gtviiVSHDR~F--------Ld~V~t~I~~ld~g~l 228 (530)
T COG0488 185 ---------DL----ESIEWLEDYLKRYPGTVIVVSHDRYF--------LDNVATHILELDRGKL 228 (530)
T ss_pred ---------CH----HHHHHHHHHHHhCCCcEEEEeCCHHH--------HHHHhhheEEecCCce
Confidence 22 44567777777776699999999854 9999999999987644
No 387
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.69 E-value=6e-08 Score=112.36 Aligned_cols=135 Identities=22% Similarity=0.334 Sum_probs=83.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.... ..+++++.+ +..+++.. +++.+ +
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~------G~I~idg~~l~~~~~~~lr~~---i~~v~Q~~~lf~~TI~e 557 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE------GSVLLDGVDIRQIDPADLRRN---IGYVPQDPRLFYGTLRD 557 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------ceEEECCEEhhhCCHHHHHhc---cEEECCChhhhhhhHHH
Confidence 368999999999999999999999999887653 234444432 11222211 11111 1
Q ss_pred ccccCCc-ccHHHH----------------------------------------HHHhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYSS-TDIEDI----------------------------------------VEKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~~-~~~e~i----------------------------------------~~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+..+ .+.+++ +...--.+|+++|+||+++-+
T Consensus 558 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L----- 632 (694)
T TIGR03375 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM----- 632 (694)
T ss_pred HHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC-----
Confidence 1111100 011111 111112359999999998765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.++.+ +.|+|+++|.... + ..||.|+.|++++.
T Consensus 633 ----D~~te~~i~~~l~~~~~--~~T~iiItHrl~~--------~-~~~D~iivl~~G~i 677 (694)
T TIGR03375 633 ----DNRSEERFKDRLKRWLA--GKTLVLVTHRTSL--------L-DLVDRIIVMDNGRI 677 (694)
T ss_pred ----CHHHHHHHHHHHHHHhC--CCEEEEEecCHHH--------H-HhCCEEEEEeCCEE
Confidence 44445566777776653 7899999998742 4 56999999998764
No 388
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.7e-08 Score=114.72 Aligned_cols=181 Identities=22% Similarity=0.263 Sum_probs=110.4
Q ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-------CC-------CCccEEEEeCccC--------------
Q 007957 200 LGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-------LG-------EPSPVVYVSGEES-------------- 251 (583)
Q Consensus 200 LgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-------~~-------~~~~VLyis~Ees-------------- 251 (583)
+.|=+.+|++++|.|++|+|||||+..+++....+.. ++ -...+.|+.-++.
T Consensus 49 vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~ 128 (613)
T KOG0061|consen 49 VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFS 128 (613)
T ss_pred cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHH
Confidence 3567899999999999999999999999998875311 01 0012333333321
Q ss_pred ----------HHHHHHHH----Hhcccccccccc--------CCcccHHHHHHHhc-ccCCCEEEEccchhhhhhcccCC
Q 007957 252 ----------VEQIGNRA----DRMMIATEELFL--------YSSTDIEDIVEKVQ-PLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 252 ----------~~qi~~R~----~rl~i~~~~i~i--------~~~~~~e~i~~~i~-~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
.++...|. ..+++..-.-.+ ++..+..++--+++ -.+|.++++||+++.+
T Consensus 129 A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL------- 201 (613)
T KOG0061|consen 129 ALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL------- 201 (613)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc-------
Confidence 01111111 111111000000 11122223222222 1369999999999865
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccce-
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGV- 387 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~- 387 (583)
|......+++.|+++|++ |.+||++-|... ..+-++.|.+++|..++.. . +|+..+...
T Consensus 202 --DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPs-------s~lf~lFD~l~lLs~G~~v-----y-----~G~~~~~~~f 261 (613)
T KOG0061|consen 202 --DSFSALQVVQLLKRLARS-GRTVICTIHQPS-------SELFELFDKLLLLSEGEVV-----Y-----SGSPRELLEF 261 (613)
T ss_pred --chhhHHHHHHHHHHHHhC-CCEEEEEEeCCc-------HHHHHHHhHhhhhcCCcEE-----E-----ecCHHHHHHH
Confidence 444566889999999999 999999988874 3588999999999877531 1 465555333
Q ss_pred eecccCCeEEecCCCccccc
Q 007957 388 FEMSQLGLQAVSNPSKIFLS 407 (583)
Q Consensus 388 f~It~~GL~~v~~ps~ifl~ 407 (583)
|..-+.-.....||.+++++
T Consensus 262 f~~~G~~~P~~~Npadf~l~ 281 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLD 281 (613)
T ss_pred HHhCCCCCCCcCChHHHHHH
Confidence 33233334467788888875
No 389
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.69 E-value=1.9e-07 Score=95.68 Aligned_cols=140 Identities=20% Similarity=0.315 Sum_probs=95.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHH-HHHhccccccccccCCc----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGN-RADRMMIATEELFLYSS---- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~-R~~rl~i~~~~i~i~~~---- 274 (583)
++.|++.+|.|-+|+|||||++.+-..+... .+ -+++.+++ +..+++. |.+++.+..+++-+++.
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept-----~G-~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl 124 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT-----RG-EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVL 124 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCC-----Cc-eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHh
Confidence 5789999999999999999999998777664 22 44555554 3344322 33444433332221111
Q ss_pred --------------cc-HHHHHHH-----------------------------hcccCCCEEEEccchhhhhhcccCCCC
Q 007957 275 --------------TD-IEDIVEK-----------------------------VQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 275 --------------~~-~e~i~~~-----------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
.+ -+...+. .-..+|+++++||.++.+
T Consensus 125 ~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSAL--------- 195 (386)
T COG4175 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL--------- 195 (386)
T ss_pred hhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhc---------
Confidence 00 1111111 112359999999998866
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++.-..++...|.++-++.+.||++++|...+ .-.+.|+|..|++++.
T Consensus 196 DPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE--------AlriG~rIaimkdG~i 243 (386)
T COG4175 196 DPLIRTEMQDELLELQAKLKKTIVFITHDLDE--------ALRIGDRIAIMKDGEI 243 (386)
T ss_pred ChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH--------HHhccceEEEecCCeE
Confidence 44556678889999999999999999999876 6778999999988764
No 390
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.69 E-value=9.8e-08 Score=109.47 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=83.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc-------CHHH-HHH--------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE-------SVEQ-IGN-------------- 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee-------s~~q-i~~-------------- 257 (583)
-+.+|++++|.|+||+|||||+..+++.+....|. +....+.|+.-+. +..+ +..
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 420 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV 420 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHH
Confidence 46899999999999999999999999887654331 1122456665431 1111 110
Q ss_pred --HHHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 258 --RADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 258 --R~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
.+.++++... .+..++...-.+ .+..+-..+|+++|+||+++.+ |......+...| ++++
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~L---------D~~~~~~l~~~l----~~~~ 487 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL---------DVETLELLEELL----DSYQ 487 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---------CHHHHHHHHHHH----HhCC
Confidence 0111111100 000111111111 2222333479999999999865 333333333333 4456
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEe-Cce
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME-GEK 365 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le-~~~ 365 (583)
.+||+++|.... +..+||.++.|+ .+.
T Consensus 488 ~tvi~vSHd~~~--------~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 488 GTVLLVSHDRQF--------VDNTVTECWIFEGNGK 515 (635)
T ss_pred CeEEEEECCHHH--------HHHhcCEEEEEeCCCe
Confidence 799999999755 889999999997 444
No 391
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.68 E-value=7.6e-08 Score=109.37 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++-+ |......+.+.|.++. .+.|+|+++|... .-..+|.|+.|++++.
T Consensus 489 ~~~iliLDEpts~L---------D~~t~~~i~~~l~~~~--~~~tvIiitHr~~---------~~~~~D~ii~l~~G~i 547 (588)
T PRK13657 489 DPPILILDEATSAL---------DVETEAKVKAALDELM--KGRTTFIIAHRLS---------TVRNADRILVFDNGRV 547 (588)
T ss_pred CCCEEEEeCCccCC---------CHHHHHHHHHHHHHHh--cCCEEEEEEecHH---------HHHhCCEEEEEECCEE
Confidence 59999999999765 4444556666776653 3799999999874 3456999999988764
No 392
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.67 E-value=1.2e-07 Score=105.51 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=98.3
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC---CCCCccEEEEeCccC--------------------HHHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD---LGEPSPVVYVSGEES--------------------VEQIGNR 258 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~---~~~~~~VLyis~Ees--------------------~~qi~~R 258 (583)
-.+.+|+-++|.|+||+|||||+..+++.+....+ .+.+-++-|++-+.+ ...++..
T Consensus 343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~ 422 (530)
T COG0488 343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY 422 (530)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence 36789999999999999999999999888776543 134456888875421 1233344
Q ss_pred HHhcccccccc----ccCCccc-HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 007957 259 ADRMMIATEEL----FLYSSTD-IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333 (583)
Q Consensus 259 ~~rl~i~~~~i----~i~~~~~-~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV 333 (583)
+.++++..+.. ..++..+ ..-.+..+...+|.++|+|||++-+ |. +....|.+...++.-+|
T Consensus 423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL---------Di----~s~~aLe~aL~~f~Gtv 489 (530)
T COG0488 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL---------DI----ESLEALEEALLDFEGTV 489 (530)
T ss_pred HHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC---------CH----HHHHHHHHHHHhCCCeE
Confidence 45555554432 1233322 2334555566689999999999865 33 33445556666789999
Q ss_pred EEecccCCccCcCCccchheeccEEEEEeC
Q 007957 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 334 IlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
|+|+|...- ++.+|+.++.++.
T Consensus 490 l~VSHDr~F--------l~~va~~i~~~~~ 511 (530)
T COG0488 490 LLVSHDRYF--------LDRVATRIWLVED 511 (530)
T ss_pred EEEeCCHHH--------HHhhcceEEEEcC
Confidence 999999854 9999999999986
No 393
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.67 E-value=9.7e-08 Score=110.63 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=84.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.... ..+++++.+ +.+.++.+ +++.. +
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~------G~I~idg~~i~~~~~~~~r~~---i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH------GQVLVDGVDLAIADPAWLRRQ---MGVVLQENVLFSRSIRD 549 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------ceEEECCEehhhCCHHHHHHh---CeEEccCCeehhhhHHH
Confidence 468999999999999999999999999987642 244555432 22222221 22111 1
Q ss_pred ccccCC-cccHHHHHH----------------------------------------HhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYS-STDIEDIVE----------------------------------------KVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~-~~~~e~i~~----------------------------------------~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+.. ..+.+++.+ ..--.+|+++++||+++.+
T Consensus 550 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L----- 624 (694)
T TIGR01846 550 NIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL----- 624 (694)
T ss_pred HHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC-----
Confidence 111111 011111111 1111259999999998765
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++. .+.|+|+++|.... +. .||.|+.|++++.
T Consensus 625 ----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--------~~-~~d~ii~l~~G~i 669 (694)
T TIGR01846 625 ----DYESEALIMRNMREIC--RGRTVIIIAHRLST--------VR-ACDRIIVLEKGQI 669 (694)
T ss_pred ----CHHHHHHHHHHHHHHh--CCCEEEEEeCChHH--------HH-hCCEEEEEeCCEE
Confidence 4445566777777764 47899999998743 55 4999999998764
No 394
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.3e-07 Score=99.83 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++|++++.. |......+...|..+++ ++|+|+++|.... +.++||+|++|+.++.
T Consensus 243 ~p~IlLLDEPts~L---------D~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~--------i~~~~Driivl~~G~i 302 (329)
T PRK14257 243 EPEVLLMDEPTSAL---------DPIATAKIEELILELKK--KYSIIIVTHSMAQ--------AQRISDETVFFYQGWI 302 (329)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999998765 33344455555655554 5899999999754 7888999999998764
No 395
>PLN03073 ABC transporter F family; Provisional
Probab=98.67 E-value=1.3e-07 Score=109.33 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=85.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCccC------HH---------------HHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEES------VE---------------QIGNR 258 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ees------~~---------------qi~~R 258 (583)
-+.+|++++|.|+||+|||||+..+++.+.+..|. ....++.|+.-+.. .. .+...
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 610 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 610 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence 57899999999999999999999999987654321 01123556553210 00 01111
Q ss_pred HHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 007957 259 ADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333 (583)
Q Consensus 259 ~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV 333 (583)
+.++++... .+.-++.....+ .+..+-..+|+++++||+++.+ |......++..|.++ +.+|
T Consensus 611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L---------D~~s~~~l~~~L~~~----~gtv 677 (718)
T PLN03073 611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL---------DLDAVEALIQGLVLF----QGGV 677 (718)
T ss_pred HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---------CHHHHHHHHHHHHHc----CCEE
Confidence 122333210 111122222222 2222334579999999999866 444445555555443 3599
Q ss_pred EEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 334 IlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
|+++|.... +..+||.++.|++++
T Consensus 678 IivSHd~~~--------i~~~~drv~~l~~G~ 701 (718)
T PLN03073 678 LMVSHDEHL--------ISGSVDELWVVSEGK 701 (718)
T ss_pred EEEECCHHH--------HHHhCCEEEEEECCE
Confidence 999998755 888999999998765
No 396
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.67 E-value=1e-07 Score=109.22 Aligned_cols=59 Identities=10% Similarity=0.202 Sum_probs=44.3
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|. +++.+||+++|.... +..+||.|+.|+.++.
T Consensus 173 ~~P~lLLLDEPt~~L---------D~~~~~~L~~~L~----~~~~tvlivsHd~~~--------l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 173 SNPDVLLLDEPTNHL---------DIETIEWLEGFLK----TFQGSIIFISHDRSF--------IRNMATRIVDLDRGKL 231 (635)
T ss_pred cCCCEEEEcCCCCcc---------CHHHHHHHHHHHH----hCCCEEEEEeCCHHH--------HHHhcCeEEEEECCEE
Confidence 469999999999866 4444444444444 445799999999855 8899999999987654
No 397
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.67 E-value=9.5e-08 Score=108.34 Aligned_cols=135 Identities=19% Similarity=0.285 Sum_probs=83.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-+++|+.++|.|++|+|||||+..+++.+.... ..+++++.+ +.++++.. +++.. +
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~------G~I~i~g~~i~~~~~~~~r~~---i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ------GEILLNGQPIADYSEAALRQA---ISVVSQRVHLFSATLRD 432 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC------ceEEECCEEhhhCCHHHHHhh---eeEEcccchhhcccHHH
Confidence 468999999999999999999999999887643 234444432 11122211 11111 1
Q ss_pred ccccCC----cccHHHH------------------------------------HHHhcccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYS----STDIEDI------------------------------------VEKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~----~~~~e~i------------------------------------~~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+.+.. +.++.+. +...--.+|+++|+||+++.+
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~l------ 506 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL------ 506 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC------
Confidence 111110 0011111 111112259999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.++. .+.|+|+++|.... +. .||.|+.|++++.
T Consensus 507 ---D~~t~~~i~~~l~~~~--~~~tviiitHr~~~--------~~-~~d~i~~l~~G~i 551 (574)
T PRK11160 507 ---DAETERQILELLAEHA--QNKTVLMITHRLTG--------LE-QFDRICVMDNGQI 551 (574)
T ss_pred ---CHHHHHHHHHHHHHHc--CCCEEEEEecChhH--------HH-hCCEEEEEeCCeE
Confidence 4444556666776664 37899999998743 54 4999999998764
No 398
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.65 E-value=1.8e-07 Score=105.70 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=44.5
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
..+|+++++||+++.+ |......+...|.++ +.+||+++|.... +..+||.|+.|+.++
T Consensus 179 ~~~p~vlLLDEPt~~L---------D~~~~~~l~~~L~~~----~~tviiisHd~~~--------~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 179 LEKPDMLLLDEPTNHL---------DAESVAWLEQFLHDY----PGTVVAVTHDRYF--------LDNVAGWILELDRGR 237 (556)
T ss_pred hCCCCEEEEcCCCCcC---------ChHHHHHHHHHHHhC----CCeEEEEeCCHHH--------HHhhcCeEEEEeCCE
Confidence 3479999999999876 333444444444443 4699999999865 889999999998765
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 238 i 238 (556)
T PRK11819 238 G 238 (556)
T ss_pred E
Confidence 3
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.65 E-value=8.5e-08 Score=103.40 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=49.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
+|.+||+||+.+-++.. --..++..+.. +|+.|+++|+++|... +-..+|.|++|+++...
T Consensus 490 ~P~lvVLDEPNsNLD~~---------GE~AL~~Ai~~-~k~rG~~vvviaHRPs---------~L~~~Dkilvl~~G~~~ 550 (580)
T COG4618 490 DPFLVVLDEPNSNLDSE---------GEAALAAAILA-AKARGGTVVVIAHRPS---------ALASVDKILVLQDGRIA 550 (580)
T ss_pred CCcEEEecCCCCCcchh---------HHHHHHHHHHH-HHHcCCEEEEEecCHH---------HHhhcceeeeecCChHH
Confidence 59999999998755221 11234445544 4667999999999874 56679999999988753
Q ss_pred eeeeEEEEecccCCcccc
Q 007957 368 SYRLLRSVKNRFGSTDEL 385 (583)
Q Consensus 368 ~~R~L~i~KnR~g~~~ei 385 (583)
.||+.+|+
T Consensus 551 ----------~FG~r~eV 558 (580)
T COG4618 551 ----------AFGPREEV 558 (580)
T ss_pred ----------hcCCHHHH
Confidence 47776664
No 400
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=1.7e-07 Score=88.41 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=88.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHH-HHHHHHhccccccccccCCc----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQ-IGNRADRMMIATEELFLYSS---- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~q-i~~R~~rl~i~~~~i~i~~~---- 274 (583)
+.+|+.+.|.|++|+|||||+..+|+.-.... .-+++-+.. ..++ -..|....++....+.+++.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss------GeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAl 106 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS------GEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTAL 106 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC------ceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhh
Confidence 47899999999999999999999987755432 233333321 1111 12233444443332222110
Q ss_pred --------------cc-H---HH--------------------------HHHHhcccCCCEEEEccchhhhhhcccCCCC
Q 007957 275 --------------TD-I---ED--------------------------IVEKVQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 275 --------------~~-~---e~--------------------------i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
.+ . .+ .+...-.-.|++++-|+++--+
T Consensus 107 ENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL--------- 177 (228)
T COG4181 107 ENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL--------- 177 (228)
T ss_pred hhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCc---------
Confidence 00 0 11 1111222359999999997543
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-+.++..|..+.++.|.|.++++|... +..-||+.+.++.++.
T Consensus 178 D~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~---------LA~Rc~R~~r~~~G~l 224 (228)
T COG4181 178 DRATGDKIADLLFALNRERGTTLVLVTHDPQ---------LAARCDRQLRLRSGRL 224 (228)
T ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCHH---------HHHhhhheeeeeccee
Confidence 3333457778888889999999999999874 8888999999987764
No 401
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.65 E-value=1.5e-07 Score=107.48 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=50.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......++..|++++++ |.|||+++|.... .+.+++|.++.|++++.
T Consensus 184 ~p~vlllDEPtsgL---------D~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~-------~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 184 DPPLLFCDEPTSGL---------DSFMAYSVVQVLKGLAQK-GKTIICTIHQPSS-------ELFELFDKIILMAEGRV 245 (617)
T ss_pred CCCEEEeeCCCcch---------hHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCH-------HHHHHhceEEEeeCCeE
Confidence 59999999999876 455567888888888865 9999999998741 27889999999997764
No 402
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.6e-07 Score=101.98 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=85.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc---CHHHHHHHHH----hcccc----cccccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE---SVEQIGNRAD----RMMIA----TEELFL 271 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee---s~~qi~~R~~----rl~i~----~~~i~i 271 (583)
-+.+|+-+.|.|++|+|||||+..+++.+..+.+ .+..-..|. +.+.+++.+. +..+- .+|+.+
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G-----~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~l 434 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG-----SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC-----eeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhh
Confidence 4689999999999999999999999998877532 333322221 2222333321 11110 122222
Q ss_pred CCcc-cHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhcccCCCC
Q 007957 272 YSST-DIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 272 ~~~~-~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
..++ +-+++. ..+--.+..++++||++..+
T Consensus 435 A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL--------- 505 (573)
T COG4987 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL--------- 505 (573)
T ss_pred cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC---------
Confidence 2111 111111 11111247899999999766
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-++++..|.+.++ |.|+++++|.... +|+ +|+|++++.++.
T Consensus 506 D~~TE~~vL~ll~~~~~--~kTll~vTHrL~~--------le~-~drIivl~~Gki 550 (573)
T COG4987 506 DPITERQVLALLFEHAE--GKTLLMVTHRLRG--------LER-MDRIIVLDNGKI 550 (573)
T ss_pred ChhhHHHHHHHHHHHhc--CCeEEEEeccccc--------Hhh-cCEEEEEECCee
Confidence 34445667777766665 8999999998865 554 899999998875
No 403
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.1e-07 Score=97.28 Aligned_cols=60 Identities=13% Similarity=0.333 Sum_probs=46.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEE-EEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVL-YMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl-~Le~~~~ 366 (583)
+|+++++|++++.+ |......+...|.++++ +.+||+++|.... +..+||.++ +|++++.
T Consensus 218 ~p~lLLLDEPtsgL---------D~~~~~~l~~~L~~~~~--~~tiiivtH~~~~--------i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 218 DPEVILMDEPASAL---------DPIATSKIEDLIEELAE--EYTVVVVTHNMQQ--------AARISDQTAVFLTGGEL 278 (305)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHhc--CCEEEEEEcCHHH--------HHHhcCEEEEEecCCEE
Confidence 69999999998765 55566677777877765 3789999998754 788999974 6677653
No 404
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.65 E-value=1.1e-07 Score=107.80 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=45.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. .+.|+|+++|.... +. .+|.|+.|++++.
T Consensus 469 ~~~illlDEpts~L---------D~~~~~~i~~~l~~~~--~~~tii~itH~~~~--------~~-~~d~i~~l~~G~i 527 (569)
T PRK10789 469 NAEILILDDALSAV---------DGRTEHQILHNLRQWG--EGRTVIISAHRLSA--------LT-EASEILVMQHGHI 527 (569)
T ss_pred CCCEEEEECccccC---------CHHHHHHHHHHHHHHh--CCCEEEEEecchhH--------HH-cCCEEEEEeCCEE
Confidence 59999999999865 4445556677776654 48899999998743 44 5999999987764
No 405
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.64 E-value=9.9e-08 Score=108.41 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |....+.+.+.|.++. .+.|+|+++|.... ++ .||.|+.|++++.
T Consensus 489 ~p~ililDEpts~L---------D~~~~~~i~~~l~~~~--~~~tvI~isH~~~~--------~~-~~d~i~~l~~G~i 547 (585)
T TIGR01192 489 NAPILVLDEATSAL---------DVETEARVKNAIDALR--KNRTTFIIAHRLST--------VR-NADLVLFLDQGRL 547 (585)
T ss_pred CCCEEEEECCccCC---------CHHHHHHHHHHHHHHh--CCCEEEEEEcChHH--------HH-cCCEEEEEECCEE
Confidence 59999999999765 4444556666676653 38899999999743 64 4999999998764
No 406
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.7e-07 Score=93.19 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=48.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc-CCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK-TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~-~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|.++|+||+.+.+ |......+.+.|.+++.. .+.++|+|+|...+ +-...+.++.|..++
T Consensus 188 ~~P~LLiLDEP~~GL---------Dl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eE--------i~~~~th~lll~~g~ 250 (257)
T COG1119 188 KDPELLILDEPAQGL---------DLIAREQLLNRLEELAASPGAPALLFVTHHAEE--------IPPCFTHRLLLKEGE 250 (257)
T ss_pred cCCCEEEecCccccC---------ChHHHHHHHHHHHHHhcCCCCceEEEEEcchhh--------cccccceEEEeeCCc
Confidence 359999999998765 444555778888887765 35778899999876 677788889888766
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 251 v 251 (257)
T COG1119 251 V 251 (257)
T ss_pred e
Confidence 4
No 407
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.1e-07 Score=92.54 Aligned_cols=142 Identities=14% Similarity=0.252 Sum_probs=86.1
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc------CHHHHHHHHHhcccccc--------
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE------SVEQIGNRADRMMIATE-------- 267 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee------s~~qi~~R~~rl~i~~~-------- 267 (583)
..+++++++.|.||+|||||||++.+-.......+..-.+.|+| .++. ....++.| .|+...
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~-~g~ni~~~~~d~~~lRr~---vGMVFQkPnPFp~S 103 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL-DGKNIYDPKVDVVELRRR---VGMVFQKPNPFPMS 103 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE-CCeeccCCCCCHHHHHHH---heeeccCCCCCCch
Confidence 46899999999999999999999998665443211000123443 3332 23344443 332211
Q ss_pred ---ccc----c--CCccc--------------HHHHHHH--------------------hcccCCCEEEEccchhhhhhc
Q 007957 268 ---ELF----L--YSSTD--------------IEDIVEK--------------------VQPLSPRALIIDSIQTVYLRG 304 (583)
Q Consensus 268 ---~i~----i--~~~~~--------------~e~i~~~--------------------i~~~~p~lVVIDsi~~l~~~~ 304 (583)
|+- + +.... |+++.+. .-..+|+++++||+++.+.
T Consensus 104 IydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALD-- 181 (253)
T COG1117 104 IYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD-- 181 (253)
T ss_pred HHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccC--
Confidence 110 0 00011 2222222 2234699999999998763
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 305 VAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 305 ~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|-+...+.+++..|+ .+.||++++|.... ..+++|...+|..++.
T Consensus 182 ----PIsT~kIEeLi~eLk-----~~yTIviVTHnmqQ--------AaRvSD~taFf~~G~L 226 (253)
T COG1117 182 ----PISTLKIEELITELK-----KKYTIVIVTHNMQQ--------AARVSDYTAFFYLGEL 226 (253)
T ss_pred ----chhHHHHHHHHHHHH-----hccEEEEEeCCHHH--------HHHHhHhhhhhcccEE
Confidence 235556677776665 37899999999854 7788999998886654
No 408
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.5e-07 Score=91.07 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=46.2
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCc
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGE 364 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~ 364 (583)
-.+|+++|+|++.+.+ |...++.+...+..+. +.+..+++|+|..+- +.++ .|.|-+|..+
T Consensus 160 ~lePkl~ILDE~DSGL---------DIdalk~V~~~i~~lr-~~~~~~liITHy~rl--------l~~i~pD~vhvl~~G 221 (251)
T COG0396 160 LLEPKLAILDEPDSGL---------DIDALKIVAEGINALR-EEGRGVLIITHYQRL--------LDYIKPDKVHVLYDG 221 (251)
T ss_pred hcCCCEEEecCCCcCc---------cHHHHHHHHHHHHHHh-cCCCeEEEEecHHHH--------HhhcCCCEEEEEECC
Confidence 3569999999998755 5666666666666665 459999999999853 5555 3888888776
Q ss_pred e
Q 007957 365 K 365 (583)
Q Consensus 365 ~ 365 (583)
+
T Consensus 222 r 222 (251)
T COG0396 222 R 222 (251)
T ss_pred E
Confidence 5
No 409
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-07 Score=102.09 Aligned_cols=143 Identities=21% Similarity=0.255 Sum_probs=85.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C---C-------CccEEEEeCc------------------cC
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G---E-------PSPVVYVSGE------------------ES 251 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~---~-------~~~VLyis~E------------------es 251 (583)
+++|+.+.|.|++|+|||||+..+++.+....+. + . .+.+.|++-. .+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 5899999999999999999999999998864330 0 0 0123333321 11
Q ss_pred HHHHHHHHHhccccc-----cccc-cC-------CcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHH
Q 007957 252 VEQIGNRADRMMIAT-----EELF-LY-------SSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317 (583)
Q Consensus 252 ~~qi~~R~~rl~i~~-----~~i~-i~-------~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvre 317 (583)
.+++..-+++.++.. +.+. .+ +....++ .+...--.+++++++||+++-+ |...-..
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~L---------D~etE~~ 494 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHL---------DAETEQI 494 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCC---------CHhHHHH
Confidence 222322222222110 0000 00 0111111 1222222358999999999865 3444456
Q ss_pred HHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 318 i~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.+.|.+++++ .|||+++|... .-..+|.|++|+.++.
T Consensus 495 i~~~l~~l~~~--ktvl~itHrl~---------~~~~~D~I~vld~G~l 532 (559)
T COG4988 495 ILQALQELAKQ--KTVLVITHRLE---------DAADADRIVVLDNGRL 532 (559)
T ss_pred HHHHHHHHHhC--CeEEEEEcChH---------HHhcCCEEEEecCCce
Confidence 77788888875 89999999864 4456999999998764
No 410
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.62 E-value=1.3e-07 Score=106.38 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=45.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.. |......+.+.|.++.. .+.|+|+++|.... + ..||.|+.|++++.
T Consensus 472 ~~~ililDEpts~L---------D~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~--------~-~~~d~i~~l~~G~i 531 (544)
T TIGR01842 472 DPKLVVLDEPNSNL---------DEEGEQALANAIKALKA-RGITVVVITHRPSL--------L-GCVDKILVLQDGRI 531 (544)
T ss_pred CCCEEEEeCCcccc---------CHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--------H-HhCCEEEEEECCEE
Confidence 59999999999765 44445566666766643 47899999998732 4 46999999988764
No 411
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.62 E-value=9.4e-08 Score=97.26 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=88.7
Q ss_pred cccccEEEEecCCcccccccccHHHHHHHHHcccCCCCCCc--eEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEe
Q 007957 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNG--IAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVP 549 (583)
Q Consensus 472 ~~~~dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~~~~~--~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP 549 (583)
+..-+|.+|+ -.+.||||+|.+.++|+.-+..-.+... ++=+|-|.-||+|-+|+||..++.+|+++|.+-+++|
T Consensus 220 ~~~~~V~~~~---~~IGGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P 296 (342)
T COG3480 220 WAPPDVDFNT---ENIGGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVP 296 (342)
T ss_pred ccCCceEeec---ccCCCCchhheeeHHHHhhcccccccCceEEecceeeccCCcccCcccHhHHhHHHHhcCCcEEEec
Confidence 3456777777 4588999999999999999866655433 4559999999999999999999999999999999999
Q ss_pred CCChhhh----------h--hcCCCCcEEEEeCCHHHHHHHhhcCC
Q 007957 550 KSAEKSL----------A--TLGFEQMEFIGCKNLKEVINVVFTTP 583 (583)
Q Consensus 550 ~~n~~e~----------~--~~~~~~i~v~~v~~l~e~~~~l~~~~ 583 (583)
.+|..+- . ..+...+++++|.|+.|++++|..++
T Consensus 297 ~~~~~e~~s~sny~~a~~~ak~l~t~mkivpv~T~q~aldyl~~~~ 342 (342)
T COG3480 297 ADNCAEEMSDSNYDEALVAAEDLSTAMKIVPVKTLQEALDYLEKLE 342 (342)
T ss_pred CCccchhhccCCHHHHHHHHHhhcccceEEeechhhhhhhHhhcCC
Confidence 9764431 0 12345899999999999999987653
No 412
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.60 E-value=3e-07 Score=96.74 Aligned_cols=145 Identities=20% Similarity=0.316 Sum_probs=94.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHH-HHHhcc---------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGN-RADRMM--------------- 263 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~-R~~rl~--------------- 263 (583)
+.+|+.+.|.|++|+|||..++.+...+..... ..+..-+.|.+++ +..+++. |-.+++
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~-~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~t 111 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAA-AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHT 111 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcc-cCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhH
Confidence 588999999999999999999999998876321 1111233334443 1112111 111222
Q ss_pred --------------------------------cccccccc------CCcccHHH-HHHHhcccCCCEEEEccchhhhhhc
Q 007957 264 --------------------------------IATEELFL------YSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRG 304 (583)
Q Consensus 264 --------------------------------i~~~~i~i------~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~ 304 (583)
++...-.+ ++...-++ ++...-..+|+++|-||+++.+
T Consensus 112 Ig~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTAL--- 188 (534)
T COG4172 112 IGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTAL--- 188 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchh---
Confidence 11110000 11111122 3333345579999999999876
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 305 VAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 305 ~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|+.-..++++.|+++-++.|..+++|+|... .+.+++|+|.+|.+++.
T Consensus 189 ------DVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~--------iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 189 ------DVTVQAQILDLLKELQAELGMAILFITHDLG--------IVRKFADRVYVMQHGEI 236 (534)
T ss_pred ------hhhhHHHHHHHHHHHHHHhCcEEEEEeccHH--------HHHHhhhhEEEEeccEE
Confidence 5556678889999999999999999999873 58999999999987765
No 413
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.60 E-value=1.8e-07 Score=108.61 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=29.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
-+++|+.++|.|++|+|||||+..+++.+...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 46899999999999999999999999998775
No 414
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=3.4e-07 Score=86.42 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHH-------HHHHHhc--ccccc----ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQI-------GNRADRM--MIATE----ELF 270 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi-------~~R~~rl--~i~~~----~i~ 270 (583)
+.||++..|.|++|+|||||+..++..+.++ .+.|.|......+..+ +.++.|. |+... .++
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-----~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLR 103 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPD-----AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLR 103 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCC-----CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccce
Confidence 5899999999999999999999999999886 4567787654333222 1122221 11100 000
Q ss_pred --c------------CCcc--------------------------------cHHHHHHHhcc--cCCCEEEEccchhhhh
Q 007957 271 --L------------YSST--------------------------------DIEDIVEKVQP--LSPRALIIDSIQTVYL 302 (583)
Q Consensus 271 --i------------~~~~--------------------------------~~e~i~~~i~~--~~p~lVVIDsi~~l~~ 302 (583)
+ .... .+.+-++.... ..|+++++|+++..+
T Consensus 104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGL- 182 (258)
T COG4107 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL- 182 (258)
T ss_pred eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCc-
Confidence 0 0000 01111111111 259999999998654
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 303 RGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 303 ~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.+-..+++..|..+..+.+.++++++|... ...-++|+.+.|..+..
T Consensus 183 --------DVSVQARLLDllrgLv~~l~la~viVTHDl~--------VarLla~rlmvmk~g~v 230 (258)
T COG4107 183 --------DVSVQARLLDLLRGLVRELGLAVVIVTHDLA--------VARLLADRLMVMKQGQV 230 (258)
T ss_pred --------chhhHHHHHHHHHHHHHhcCceEEEEechhH--------HHHHhhhcceeecCCCE
Confidence 4555667888889999999999999999874 36667899999887653
No 415
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.59 E-value=5.4e-08 Score=115.28 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=102.1
Q ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHH--HHHhcccccc----------
Q 007957 200 LGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGN--RADRMMIATE---------- 267 (583)
Q Consensus 200 LgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~--R~~rl~i~~~---------- 267 (583)
+.-.+++|++.++.|+||+||||+...+.+...... .-.|+.+-........ -.+.+|.-++
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~------G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS------GEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc------ceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 345789999999999999999999999988877653 2444443322111000 1112221110
Q ss_pred --cccc------CCcccH-----------------------------HHHHHHhccc-CCCEEEEccchhhhhhcccCCC
Q 007957 268 --ELFL------YSSTDI-----------------------------EDIVEKVQPL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 268 --~i~i------~~~~~~-----------------------------e~i~~~i~~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
.+++ +...++ .++.-.+.-. +|++|++|++++..
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGm-------- 729 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL-------- 729 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC--------
Confidence 0000 111122 1121112111 49999999999865
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCCc
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGST 382 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~ 382 (583)
|+...|.+.+.+.++.| .+..+|+++|...+ .|++||++..|-.++..-......+|+|||..
T Consensus 730 -DP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE--------~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 730 -DPKARRHLWDIIARLRK-NGKAIILTSHSMEE--------AEALCTRTAIMVIGQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred -CHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHH--------HHHHhhhhheeecCeeEEecChHHHHhhcCCc
Confidence 45555555666665555 45599999999977 99999999999988877677788899999854
No 416
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.59 E-value=2.5e-07 Score=104.50 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=84.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc-------CHHH-HHH--------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE-------SVEQ-IGN-------------- 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee-------s~~q-i~~-------------- 257 (583)
-+.+|++++|.|+||+|||||+..+++.+....|. +....+.|+.-+. +..+ +..
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 423 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS 423 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence 46899999999999999999999999876554321 0111355665431 1111 110
Q ss_pred --HHHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 258 --RADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 258 --R~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
.+.++++... .+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.++ +
T Consensus 424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~----~ 490 (552)
T TIGR03719 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL---------DVETLRALEEALLEF----A 490 (552)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHC----C
Confidence 0112222100 000111111111 2222334579999999999865 455556666666655 2
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
.+||+++|.... ++.+||.++.|+++
T Consensus 491 ~~viivsHd~~~--------~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 491 GCAVVISHDRWF--------LDRIATHILAFEGD 516 (552)
T ss_pred CeEEEEeCCHHH--------HHHhCCEEEEEECC
Confidence 479999998855 88899999999853
No 417
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.58 E-value=2.9e-07 Score=104.14 Aligned_cols=134 Identities=22% Similarity=0.344 Sum_probs=82.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------c
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE-----------E 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~-----------~ 268 (583)
+++|+.++|.|++|+|||||+..++..+.... + .+++++.+ +.+.++.+. ++.++ |
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~-----G-~I~idg~dI~~i~~~~lr~~I---~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS-----G-EILIDGIDIRDISLDSLRKRI---GIVSQDPLLFSGTIREN 422 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-----C-eEEECCEehhhcCHHHHHHhc---cEEcccceeecccHHHH
Confidence 79999999999999999999999998887642 2 34445432 223333332 22111 2
Q ss_pred cccCCc-ccHHHHHHH----------------------------------------hcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFLYSS-TDIEDIVEK----------------------------------------VQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i~~~-~~~e~i~~~----------------------------------------i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+.+..+ .+-+++.++ .--.+|+++|+||.++-.
T Consensus 423 I~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal------ 496 (567)
T COG1132 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL------ 496 (567)
T ss_pred HhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc------
Confidence 221111 011111111 111248999999998765
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+...+.++.+ +.|+|+++|.... +.+ ||.|++|+.++.
T Consensus 497 ---D~~tE~~I~~~l~~l~~--~rT~iiIaHRlst--------i~~-aD~IiVl~~G~i 541 (567)
T COG1132 497 ---DTETEALIQDALKKLLK--GRTTLIIAHRLST--------IKN-ADRIIVLDNGRI 541 (567)
T ss_pred ---CHHhHHHHHHHHHHHhc--CCEEEEEeccHhH--------HHh-CCEEEEEECCEE
Confidence 33333455666665553 4588889998744 777 999999998874
No 418
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.57 E-value=3.9e-07 Score=104.72 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
+|+++++||++..+ |......+...|.++.+ .+.++|+++|.... ++ .||+++.|++++..
T Consensus 162 ~P~lLllDEP~~gL---------D~~s~~~l~~ll~~l~~-~g~tilivsH~~~~--------~~-~~d~i~~l~~G~i~ 222 (648)
T PRK10535 162 GGQVILADEPTGAL---------DSHSGEEVMAILHQLRD-RGHTVIIVTHDPQV--------AA-QAERVIEIRDGEIV 222 (648)
T ss_pred CCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-cCCEEEEECCCHHH--------HH-hCCEEEEEECCEEE
Confidence 59999999998765 45555666666766654 58999999999743 54 59999999987653
No 419
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.56 E-value=3.9e-07 Score=102.84 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=43.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.+ .+.+||+++|.... +..+||.++.|+.++
T Consensus 178 ~~p~lLLLDEPt~~L---------D~~~~~~l~~~L~~----~~~tvIiisHd~~~--------~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 178 SKPDMLLLDEPTNHL---------DAESVAWLEQHLQE----YPGTVVAVTHDRYF--------LDNVAGWILELDRGR 235 (552)
T ss_pred cCCCEEEEcCCCCCC---------ChHHHHHHHHHHHh----CCCeEEEEeCCHHH--------HHhhcCeEEEEECCE
Confidence 469999999999866 33334444444443 35699999999855 888999999998765
No 420
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.55 E-value=1.1e-06 Score=88.01 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
|+++++||+++.+ |......+.+.|.++++ .|.++|+++|.... ++ .||.++.|+.
T Consensus 158 ~~llllDEPt~gL---------D~~~~~~l~~~l~~~~~-~g~tii~itH~~~~--------~~-~~d~i~~l~~ 213 (226)
T cd03270 158 GVLYVLDEPSIGL---------HPRDNDRLIETLKRLRD-LGNTVLVVEHDEDT--------IR-AADHVIDIGP 213 (226)
T ss_pred CCEEEEeCCccCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHH--------HH-hCCEEEEeCC
Confidence 3699999998765 55566777777777755 59999999998743 54 7999999943
No 421
>PLN03232 ABC transporter C family member; Provisional
Probab=98.55 E-value=2.9e-07 Score=114.66 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=83.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|.|++|+|||||+..+...+.... .-+++++.+ +.++++.+ +++-++
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~------G~I~IdG~di~~i~~~~lR~~---i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK------GRIMIDDCDVAKFGLTDLRRV---LSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC------ceEEECCEEhhhCCHHHHHhh---cEEECCCCeeeCccHHH
Confidence 468999999999999999999999998877642 345666543 23333333 222111
Q ss_pred ccccCCcccHHHHHHHh----------------------------------------cccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYSSTDIEDIVEKV----------------------------------------QPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~~~~~e~i~~~i----------------------------------------~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+....+.+-+++.+++ --.+|+++|+||.++-.
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL------ 1402 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV------ 1402 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC------
Confidence 11111111111111111 11248999999999765
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-+.+.+.|.+.. .++|+|+|+|.... +.+ +|.|++|++++..
T Consensus 1403 ---D~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t--------i~~-~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1403 ---DVRTDSLIQRTIREEF--KSCTMLVIAHRLNT--------IID-CDKILVLSSGQVL 1448 (1495)
T ss_pred ---CHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH--------HHh-CCEEEEEECCEEE
Confidence 3333334445555443 37999999998743 554 9999999987753
No 422
>PF13479 AAA_24: AAA domain
Probab=98.55 E-value=5.4e-07 Score=89.37 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh--
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV-- 284 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i-- 284 (583)
+-.++|+|+||+|||||+..+ . +++|++.|.....+.... +...+.+.+..++.+.++.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~-----~--------k~l~id~E~g~~~~~~~~-----~~~~i~i~s~~~~~~~~~~l~~ 64 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL-----P--------KPLFIDTENGSDSLKFLD-----DGDVIPITSWEDFLEALDELEE 64 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC-----C--------CeEEEEeCCCccchhhhc-----CCCeeCcCCHHHHHHHHHHHHh
Confidence 346899999999999999887 2 599999998754433221 11222222333334433333
Q ss_pred cccCCCEEEEccchhhhh---hccc----------CC---CCCHHHHHHHHHHHHH-HHHcCCCcEEEecccCCccCc--
Q 007957 285 QPLSPRALIIDSIQTVYL---RGVA----------GS---AGGLMQVKECTSALLR-FAKKTNIPVLLAGHVTKSGDI-- 345 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~---~~~~----------~~---~g~~~qvrei~~~L~~-lAk~~g~tVIlisH~~k~g~~-- 345 (583)
...+++.||||+++.+.. .... +. -..+..+...+..+.+ +....+..||+++|....-+.
T Consensus 65 ~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~~~~ 144 (213)
T PF13479_consen 65 DEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEEDEDG 144 (213)
T ss_pred ccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEcCCC
Confidence 235789999999987521 1111 11 1234455555555555 455689999999998754330
Q ss_pred ------------CCccchheeccEEEEEe
Q 007957 346 ------------AGPRVLEHIVDAVLYME 362 (583)
Q Consensus 346 ------------ag~~~Le~~aD~Vl~Le 362 (583)
.-...+...+|.|+++.
T Consensus 145 ~~~~~~~~~l~~k~~~~l~~~~D~V~~l~ 173 (213)
T PF13479_consen 145 GKYTRYKPKLGKKVRNELPGWFDVVGRLR 173 (213)
T ss_pred CceeEEeeccChhHHhhhhecccEEEEEE
Confidence 01247788899997775
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.55 E-value=3.5e-07 Score=89.83 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=63.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc----C--CcccHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL----Y--SSTDIED 279 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i----~--~~~~~e~ 279 (583)
.|++++|.|+||+|||||++++++....... |. |+......-|...-+..+.. .+++.. + ....+.+
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~---G~---~v~a~~~~~q~~~l~~~~~~-~d~l~~~~s~~~~e~~~~~~ 96 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQA---GA---PVCASSFELPPVKIFTSIRV-SDDLRDGISYFYAELRRLKE 96 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHc---CC---EEecCccCcccceEEEeccc-hhccccccChHHHHHHHHHH
Confidence 3699999999999999999999987632110 22 22111100000000000000 011110 0 0012334
Q ss_pred HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH-HHHHHHcCCCcEEEecccCCc
Q 007957 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA-LLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 280 i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~-L~~lAk~~g~tVIlisH~~k~ 342 (583)
+++.+...+|+++++||+.... +......+... +..+. +.+.++|+++|....
T Consensus 97 iL~~~~~~~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~-~~~~tiiivTH~~~~ 150 (199)
T cd03283 97 IVEKAKKGEPVLFLLDEIFKGT---------NSRERQAASAAVLKFLK-NKNTIGIISTHDLEL 150 (199)
T ss_pred HHHhccCCCCeEEEEecccCCC---------CHHHHHHHHHHHHHHHH-HCCCEEEEEcCcHHH
Confidence 4444444479999999998654 33333344443 44444 458999999999754
No 424
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.54 E-value=4e-07 Score=102.92 Aligned_cols=140 Identities=24% Similarity=0.289 Sum_probs=83.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc-------CHHH-HHH--------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE-------SVEQ-IGN-------------- 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee-------s~~q-i~~-------------- 257 (583)
-+.+|++++|.|+||+|||||+..+++.+....+. +....+.|+.-+. +..+ +..
T Consensus 346 ~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 425 (556)
T PRK11819 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS 425 (556)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence 36899999999999999999999999877654321 0111355655431 1111 110
Q ss_pred --HHHhcccccc----ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 258 --RADRMMIATE----ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 258 --R~~rl~i~~~----~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
.+..+++... .+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.++ .
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~----~ 492 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL---------DVETLRALEEALLEF----P 492 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---------CHHHHHHHHHHHHhC----C
Confidence 0112222100 000111111111 2222334579999999999865 444555566666554 2
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.+||+++|.... ++.+||.|+.|++
T Consensus 493 ~tvi~vtHd~~~--------~~~~~d~i~~l~~ 517 (556)
T PRK11819 493 GCAVVISHDRWF--------LDRIATHILAFEG 517 (556)
T ss_pred CeEEEEECCHHH--------HHHhCCEEEEEEC
Confidence 479999998755 8889999999985
No 425
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.54 E-value=1.8e-07 Score=104.96 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
-+++|+.++|.|++|+|||||+..+++.+...
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 375 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPT 375 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999988764
No 426
>PLN03130 ABC transporter C family member; Provisional
Probab=98.54 E-value=3.2e-07 Score=114.70 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=84.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|+|++|+|||||+..+...+.... .-+++++.+ +.++++.+ +++-++
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~------G~I~IDG~dI~~i~l~~LR~~---IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELER------GRILIDGCDISKFGLMDLRKV---LGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC------ceEEECCEecccCCHHHHHhc---cEEECCCCccccccHHH
Confidence 478999999999999999999999998877642 345666543 33344333 222111
Q ss_pred ccccCCcccHHHHHHHh----------------------------------------cccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYSSTDIEDIVEKV----------------------------------------QPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~~~~~e~i~~~i----------------------------------------~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+....+.+-+++.+++ --.+|+++|+||.++-.
T Consensus 1332 NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL------ 1405 (1622)
T PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV------ 1405 (1622)
T ss_pred HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC------
Confidence 11111111111111111 11248999999998755
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.+.. .++|+|+|+|.... +.+ ||.|++|+.++.
T Consensus 1406 ---D~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t--------I~~-~DrIlVLd~G~I 1450 (1622)
T PLN03130 1406 ---DVRTDALIQKTIREEF--KSCTMLIIAHRLNT--------IID-CDRILVLDAGRV 1450 (1622)
T ss_pred ---CHHHHHHHHHHHHHHC--CCCEEEEEeCChHH--------HHh-CCEEEEEECCEE
Confidence 2223334555555543 37999999998753 555 899999998875
No 427
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.52 E-value=1e-07 Score=93.47 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=72.0
Q ss_pred CC-eEEEEEcCCCCCHHHHHHHHHH-HHhhhcCCCCCccEEEEeCccCHH-HH-HHHHHhccccc---cccccCCcccHH
Q 007957 206 PG-SLVLIGGDPGVGKSTLLLQMAA-IIADVHDLGEPSPVVYVSGEESVE-QI-GNRADRMMIAT---EELFLYSSTDIE 278 (583)
Q Consensus 206 ~G-svilI~G~pG~GKTTLllqia~-~la~~~~~~~~~~VLyis~Ees~~-qi-~~R~~rl~i~~---~~i~i~~~~~~e 278 (583)
+| .+++|.|+||+|||||+.+++. .+....+ +|+...+... .+ ..-+..++... ..+..++ ....
T Consensus 26 ~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G-------~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs-~g~~ 97 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSG-------LPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS-SHMK 97 (200)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHHHcC-------CCccccccccCcCccEEEEecCchhhhhcCcchHH-HHHH
Confidence 45 5899999999999999999983 2222211 1111111000 00 00000111000 0000011 1122
Q ss_pred HHHHHhc-ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccE
Q 007957 279 DIVEKVQ-PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357 (583)
Q Consensus 279 ~i~~~i~-~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~ 357 (583)
++...+. ..+|+++++||+.... +......++..+.+..++.+.++|+++|.. + +...+|.
T Consensus 98 ~~~~i~~~~~~p~llllDEp~~gl---------D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~--------l~~~~d~ 159 (200)
T cd03280 98 NIARILQHADPDSLVLLDELGSGT---------DPVEGAALAIAILEELLERGALVIATTHYG-E--------LKAYAYK 159 (200)
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCC---------CHHHHHHHHHHHHHHHHhcCCEEEEECCHH-H--------HHHHHhc
Confidence 3332222 2479999999998754 444445555544444455689999999963 3 6778898
Q ss_pred EEEEeCce
Q 007957 358 VLYMEGEK 365 (583)
Q Consensus 358 Vl~Le~~~ 365 (583)
++.++.+.
T Consensus 160 ~~~l~~g~ 167 (200)
T cd03280 160 REGVENAS 167 (200)
T ss_pred CCCeEEEE
Confidence 88886543
No 428
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=7.4e-07 Score=105.39 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=87.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhcccccc-----------ccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATE-----------ELF 270 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~-----------~i~ 270 (583)
-+++|+.+.|.|++|+||||++..+...+.+. ..-+++++++-.. ++..-...+|+..+ |+.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~------~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~ 448 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPT------SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIR 448 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC------CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHh
Confidence 47999999999999999999999998888774 3477888765332 22222234443321 222
Q ss_pred cCC-cccHHHHHHHh----------------------------------------cccCCCEEEEccchhhhhhcccCCC
Q 007957 271 LYS-STDIEDIVEKV----------------------------------------QPLSPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 271 i~~-~~~~e~i~~~i----------------------------------------~~~~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+-. +.+.+++.++. --.+|+++++||.++.+
T Consensus 449 ~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL-------- 520 (1228)
T KOG0055|consen 449 YGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL-------- 520 (1228)
T ss_pred cCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc--------
Confidence 111 11122222221 11249999999999876
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-+.+...|.+..+ |.|.|+|+|.... +.+ ||.+++|+.++.
T Consensus 521 -D~~se~~Vq~ALd~~~~--grTTivVaHRLSt--------Irn-aD~I~v~~~G~I 565 (1228)
T KOG0055|consen 521 -DAESERVVQEALDKASK--GRTTIVVAHRLST--------IRN-ADKIAVMEEGKI 565 (1228)
T ss_pred -CHHHHHHHHHHHHHhhc--CCeEEEEeeehhh--------hhc-cCEEEEEECCEE
Confidence 33333334444444433 6688888998754 787 999999998875
No 429
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.51 E-value=1.2e-06 Score=88.14 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=43.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++++||+++.+ +....+.+...|.++++ +.++|+++|.. + +...||.++.|.-
T Consensus 180 ~~~illlDEp~~~l---------d~~~~~~~~~~l~~~~~--~~~ii~~~h~~-~--------~~~~~d~i~~l~~ 235 (243)
T cd03272 180 PAPFYLFDEIDAAL---------DAQYRTAVANMIKELSD--GAQFITTTFRP-E--------LLEVADKFYGVKF 235 (243)
T ss_pred CCCEEEEECCccCC---------CHHHHHHHHHHHHHHhC--CCEEEEEecCH-H--------HHhhCCEEEEEEE
Confidence 58999999998765 55566777777777654 67888888874 2 6789999999874
No 430
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.51 E-value=8.5e-08 Score=100.46 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=91.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcc---------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMM--------------- 263 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~--------------- 263 (583)
-+.+|+++-|.|.||+|||||++.+.+...+++ .-+|++++. +.++.+.-.....
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs------G~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~ 418 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS------GEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGK 418 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHhcccCCCC------CceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccC
Confidence 468899999999999999999999999998863 345666552 3333333222111
Q ss_pred --------------c------cccccccC--Cc---ccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHH
Q 007957 264 --------------I------ATEELFLY--SS---TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKEC 318 (583)
Q Consensus 264 --------------i------~~~~i~i~--~~---~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei 318 (583)
+ ...++... +. ..+..+...+++ -+++|+||+.+ +.|+.-.|.+
T Consensus 419 as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEe--R~Ilv~DEWAA---------DQDPaFRR~F 487 (546)
T COG4615 419 ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEE--RDILVLDEWAA---------DQDPAFRREF 487 (546)
T ss_pred CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhh--CCeEEeehhhc---------cCChHHHHHH
Confidence 0 00000000 00 012223333332 46999999964 3477778888
Q ss_pred HHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 319 TSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 319 ~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
-..|.-..|+.|.|||.|+|... --..||+++.++.++.
T Consensus 488 Y~~lLp~LK~qGKTI~aIsHDd~---------YF~~ADrll~~~~G~~ 526 (546)
T COG4615 488 YQVLLPLLKEQGKTIFAISHDDH---------YFIHADRLLEMRNGQL 526 (546)
T ss_pred HHHHhHHHHHhCCeEEEEecCch---------hhhhHHHHHHHhcCce
Confidence 89999999999999999999874 3446899998887764
No 431
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.51 E-value=3.2e-07 Score=113.36 Aligned_cols=63 Identities=14% Similarity=-0.012 Sum_probs=52.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++++.|++++++.|.+||++.|.... .+.+++|.|+.|++++.
T Consensus 227 ~p~vlllDEPTsgL---------D~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~-------~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 227 GAKIQCWDNATRGL---------DSATALEFIRALKTSANILDTTPLVAIYQCSQ-------DAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred CCCEEEEeCCCCCc---------CHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-------HHHHhhceEEEEeCCeE
Confidence 59999999999876 55667788999999998889999999987521 37889999999987653
No 432
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.48 E-value=1.9e-06 Score=87.28 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
.|+++++|++++.+ +......+...|.+++++ |.+||+++|... +...||.++.++++...
T Consensus 177 ~p~~lllDEPt~~L---------D~~~~~~l~~~i~~~~~~-g~~vi~isH~~~---------~~~~~d~i~~~~~~~~~ 237 (247)
T cd03275 177 PAPFFVLDEVDAAL---------DNTNVGKVASYIREQAGP-NFQFIVISLKEE---------FFSKADALVGVYRDQEC 237 (247)
T ss_pred CCCEEEEecccccC---------CHHHHHHHHHHHHHhccC-CcEEEEEECCHH---------HHhhCCeEEEEEecCCC
Confidence 48999999998765 555566677777777654 899999999852 44679999999886643
Q ss_pred e
Q 007957 368 S 368 (583)
Q Consensus 368 ~ 368 (583)
.
T Consensus 238 ~ 238 (247)
T cd03275 238 N 238 (247)
T ss_pred C
Confidence 3
No 433
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.47 E-value=1.2e-06 Score=83.01 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-------CCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-------EPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~-------~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~ 279 (583)
+.+++|.|+||+|||+++.+++..+....+.. .+..+-+++.+- +. ...++.. .....-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----i~---~~~~lS~------G~~~~~~ 87 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL----IF---TRLQLSG------GEKELSA 87 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE----eh---heeeccc------cHHHHHH
Confidence 46999999999999999999887776542100 011111111110 00 0000000 0111222
Q ss_pred HHHHhcc---cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheecc
Q 007957 280 IVEKVQP---LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356 (583)
Q Consensus 280 i~~~i~~---~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD 356 (583)
+...+.. .+|+++++||+.... +......+...|.++.++ +.++|+++|... +...+|
T Consensus 88 la~~L~~~~~~~~~llllDEp~~gl---------d~~~~~~l~~~l~~~~~~-~~~vii~TH~~~---------~~~~~d 148 (162)
T cd03227 88 LALILALASLKPRPLYILDEIDRGL---------DPRDGQALAEAILEHLVK-GAQVIVITHLPE---------LAELAD 148 (162)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH---------HHHhhh
Confidence 2233322 278999999998754 555667788888888777 899999999874 334589
Q ss_pred EEEEEeC
Q 007957 357 AVLYMEG 363 (583)
Q Consensus 357 ~Vl~Le~ 363 (583)
.++.|+.
T Consensus 149 ~~~~l~~ 155 (162)
T cd03227 149 KLIHIKK 155 (162)
T ss_pred hEEEEEE
Confidence 9988864
No 434
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.7e-06 Score=83.34 Aligned_cols=146 Identities=18% Similarity=0.274 Sum_probs=88.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC-----------CCCccEEEEeCc-cC----HHHHHHHHHh-----
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL-----------GEPSPVVYVSGE-ES----VEQIGNRADR----- 261 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~-----------~~~~~VLyis~E-es----~~qi~~R~~r----- 261 (583)
++.+|+++++.|++|||||||+..+|+.+.+..+. +....|+|-.-- .+ .+.+.--++.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k 106 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK 106 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCH
Confidence 46889999999999999999999999998876441 112334443211 01 1111111111
Q ss_pred -------------ccccc-ccccc--CCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHH
Q 007957 262 -------------MMIAT-EELFL--YSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR 324 (583)
Q Consensus 262 -------------l~i~~-~~i~i--~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~ 324 (583)
.|+.. +.-++ ++..--++ =+...-..+|+++++|++...+ |.-..+.+...|.+
T Consensus 107 ~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl---------Da~tRe~mQelLld 177 (259)
T COG4525 107 AQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL---------DALTREQMQELLLD 177 (259)
T ss_pred HHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH---------HHHHHHHHHHHHHH
Confidence 11111 11111 11111111 1222334679999999998755 22223344456778
Q ss_pred HHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 325 FAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 325 lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+.++.|..+++|+|...+ .-.+++..++|....
T Consensus 178 lw~~tgk~~lliTH~ieE--------AlflatrLvvlsp~p 210 (259)
T COG4525 178 LWQETGKQVLLITHDIEE--------ALFLATRLVVLSPGP 210 (259)
T ss_pred HHHHhCCeEEEEeccHHH--------HHhhhheeEEecCCC
Confidence 889999999999999866 567899999998654
No 435
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.47 E-value=6.5e-07 Score=111.75 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|+|++|+|||||+..+...+.... ..+++++.+ +.+.++.+. ++-++
T Consensus 1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~------G~I~IdG~dI~~i~~~~LR~~i---~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE------GEIIIDGLNIAKIGLHDLRFKI---TIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC------CeEEECCEEccccCHHHHHhcC---eEECCCCcccCccHHH
Confidence 478999999999999999999999988876642 345666543 233333332 21111
Q ss_pred ccccCCcccHHHHHHH--------------------------------------h--cccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLYSSTDIEDIVEK--------------------------------------V--QPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~~~~~~e~i~~~--------------------------------------i--~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+..++..+-+++.++ . --.+|+++|+||.++-.
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal------ 1452 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV------ 1452 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC------
Confidence 1111111111111111 1 11248999999998754
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|...-..+.+.|.+.. .++|||+|+|.... +.+ +|.|++|++++.
T Consensus 1453 ---D~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~t--------i~~-~DrIlVld~G~I 1497 (1522)
T TIGR00957 1453 ---DLETDNLIQSTIRTQF--EDCTVLTIAHRLNT--------IMD-YTRVIVLDKGEV 1497 (1522)
T ss_pred ---CHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--------HHh-CCEEEEEECCEE
Confidence 2222234444554432 37999999998743 444 899999998775
No 436
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.47 E-value=3.4e-06 Score=83.11 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=47.7
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHH-HHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVK-ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr-ei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
..+|+++++||+++.+ +..... .+...|.+++++.+.+||+++|... +...||.++.|+++
T Consensus 137 ~~~p~illlDEP~~~L---------D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~---------~~~~~d~i~~l~~~ 198 (204)
T cd03240 137 GSNCGILALDEPTTNL---------DEENIEESLAEIIEERKSQKNFQLIVITHDEE---------LVDAADHIYRVEKD 198 (204)
T ss_pred ccCCCEEEEcCCcccc---------CHHHHHHHHHHHHHHHHhccCCEEEEEEecHH---------HHhhCCEEEEEeeC
Confidence 3589999999998765 455556 6777777777766889999999853 33469999999865
Q ss_pred e
Q 007957 365 K 365 (583)
Q Consensus 365 ~ 365 (583)
.
T Consensus 199 ~ 199 (204)
T cd03240 199 G 199 (204)
T ss_pred C
Confidence 4
No 437
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.46 E-value=1.5e-06 Score=85.17 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.|+++++||+++.+ +......+...|.++++ +.+||+++|.... + ..||.++.+...+
T Consensus 135 ~~~illlDEP~~~L---------D~~~~~~l~~~l~~~~~--~~tiIiitH~~~~--------~-~~~d~v~~~~~~~ 192 (197)
T cd03278 135 PSPFCVLDEVDAAL---------DDANVERFARLLKEFSK--ETQFIVITHRKGT--------M-EAADRLYGVTMQE 192 (197)
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHhcc--CCEEEEEECCHHH--------H-hhcceEEEEEecc
Confidence 56999999998765 55566677777777654 6899999999743 4 4699999987644
No 438
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.46 E-value=7.5e-07 Score=110.95 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=82.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
=+++|+.++|+|++|+|||||+..+++.+. .. .-+++++.+ +.+.++.++ ++-++
T Consensus 1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~------G~I~IdG~di~~i~~~~lR~~i---s~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TE------GEIQIDGVSWNSVTLQTWRKAF---GVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC------cEEEECCEEcccCCHHHHHhce---EEEeCCCccCccCHHH
Confidence 468999999999999999999999999875 21 245555543 223333322 21111
Q ss_pred ccccC---CcccHH-----------------------------------HHHHHh--cccCCCEEEEccchhhhhhcccC
Q 007957 268 ELFLY---SSTDIE-----------------------------------DIVEKV--QPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 268 ~i~i~---~~~~~e-----------------------------------~i~~~i--~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
|+... ++.++. +.+... --.+++++|+||+++-.
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~l------ 1384 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL------ 1384 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC------
Confidence 11000 001111 111111 11258999999999765
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-..+.+.|.+.. .++|||+|+|.... +.+ +|.|++|++++..
T Consensus 1385 ---D~~Te~~I~~~L~~~~--~~~TvI~IaHRl~t--------i~~-~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1385 ---DPVTLQIIRKTLKQSF--SNCTVILSEHRVEA--------LLE-CQQFLVIEGSSVK 1430 (1490)
T ss_pred ---CHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--------HHh-CCEEEEEECCEEE
Confidence 3333445556665543 37999999998743 554 9999999988753
No 439
>PLN03140 ABC transporter G family member; Provisional
Probab=98.45 E-value=5.4e-07 Score=111.43 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |.....++++.|++++++.|.|+|+++|.... .+..++|.|+.|+.++.
T Consensus 354 ~p~vlllDEPTsGL---------Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~-------~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 354 PTKTLFMDEISTGL---------DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP-------ETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcEEEEeCCCcCc---------cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-------HHHHHhheEEEeeCceE
Confidence 48999999999876 56667788999999998889999999987531 27789999999987763
No 440
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.45 E-value=7e-07 Score=100.19 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=29.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
-+++|+.++|.|++|+|||||+..+++.+.+.
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999888765
No 441
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.45 E-value=3.8e-06 Score=80.50 Aligned_cols=146 Identities=16% Similarity=0.207 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC-HHHHHHHHHhccc-cccccccC-CcccHHHHHHHh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES-VEQIGNRADRMMI-ATEELFLY-SSTDIEDIVEKV 284 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees-~~qi~~R~~rl~i-~~~~i~i~-~~~~~e~i~~~i 284 (583)
.+++|.|+||+||||++.+++... +.+++|++.... .++...|..+-.. .......+ .+.++.++++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~--------~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS--------GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc--------CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 478999999999999999997653 236889987543 3445555422111 12222222 233555554432
Q ss_pred cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcC-C-------------ccc
Q 007957 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA-G-------------PRV 350 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~a-g-------------~~~ 350 (583)
..++++|+||+++.+........ +....++.+..|.+..++.+.++|+++.....|-.. . -..
T Consensus 74 -~~~~~~VlID~Lt~~~~n~l~~~--~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~ 150 (170)
T PRK05800 74 -AAPGRCVLVDCLTTWVTNLLFEE--GEEAIAAEIDALLAALQQLPAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQ 150 (170)
T ss_pred -cCCCCEEEehhHHHHHHHHhccc--chHHHHHHHHHHHHHHHcCCCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 12477999999998765433211 113345566667777777899999987655433211 1 136
Q ss_pred hheeccEEEEEeCc
Q 007957 351 LEHIVDAVLYMEGE 364 (583)
Q Consensus 351 Le~~aD~Vl~Le~~ 364 (583)
+...||.|..+-.+
T Consensus 151 la~~ad~V~~v~~G 164 (170)
T PRK05800 151 LAAAADEVYLVVAG 164 (170)
T ss_pred HHHHCCEEEEEeCC
Confidence 77789999887643
No 442
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.1e-06 Score=98.59 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~ 235 (583)
-++||+++.|.||+|+||||++..+...+.+..
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 579999999999999999999999988887754
No 443
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=8.7e-08 Score=103.36 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=84.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe----Ccc-------------------CHHHHHH-HH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS----GEE-------------------SVEQIGN-RA 259 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis----~Ee-------------------s~~qi~~-R~ 259 (583)
+..|.-++|+|+||+|||||++.|+..-...-+..+.....|+. ..+ ..+++.. .+
T Consensus 103 L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 103 LSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred eecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 57788999999999999999999987222111000000111111 111 1112222 12
Q ss_pred Hhccccccccc-----cCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEE
Q 007957 260 DRMMIATEELF-----LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334 (583)
Q Consensus 260 ~rl~i~~~~i~-----i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVI 334 (583)
..+|+..+... +.....+.-.++..--.+||++++||++.++ |.. -+..|-++...+.+|+|
T Consensus 183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhL---------Dv~----av~WLe~yL~t~~~T~l 249 (582)
T KOG0062|consen 183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHL---------DVV----AVAWLENYLQTWKITSL 249 (582)
T ss_pred HhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccc---------hhH----HHHHHHHHHhhCCceEE
Confidence 23343332111 1111223333344444589999999999987 332 34577788888999999
Q ss_pred EecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 335 lisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+|...- |.++|..||.+++.+.
T Consensus 250 iVSHDr~F--------Ln~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 250 IVSHDRNF--------LNTVCTDIIHLENLKL 273 (582)
T ss_pred EEeccHHH--------HHHHHHHHHHHhhhhh
Confidence 99999854 8999999999876443
No 444
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.44 E-value=1.4e-06 Score=100.50 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=80.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc-----C-HHHH------------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE-----S-VEQI------------------ 255 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee-----s-~~qi------------------ 255 (583)
-+.+|+.++|.|++|+|||||+..+++.+....|. .....+.|+.-+. + .+++
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~ 553 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKD 553 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHH
Confidence 36899999999999999999999999987554221 0112355655431 1 1111
Q ss_pred -HHHHHhcccccc--c-c---------ccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH
Q 007957 256 -GNRADRMMIATE--E-L---------FLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA 321 (583)
Q Consensus 256 -~~R~~rl~i~~~--~-i---------~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~ 321 (583)
..-++.+++... . . ..++....++ .+..+--.+|+++++||+++.+ |......+.+
T Consensus 554 i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~L---------D~~~~~~l~~- 623 (659)
T TIGR00954 554 LEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV---------SVDVEGYMYR- 623 (659)
T ss_pred HHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC---------CHHHHHHHHH-
Confidence 111222222110 0 0 0011111111 1222233579999999999865 3323333333
Q ss_pred HHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 322 LLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 322 L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
..++.+.|+|+++|... +...||.++.|+++
T Consensus 624 ---~l~~~~~tvI~isH~~~---------~~~~~d~il~l~~~ 654 (659)
T TIGR00954 624 ---LCREFGITLFSVSHRKS---------LWKYHEYLLYMDGR 654 (659)
T ss_pred ---HHHHcCCEEEEEeCchH---------HHHhCCEEEEEeCC
Confidence 33445999999999874 34569999999854
No 445
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.44 E-value=1e-06 Score=109.25 Aligned_cols=59 Identities=10% Similarity=0.220 Sum_probs=46.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+++++||+++.+ |......+...|.++.++.|.|+|+++|.... + ..||.|++|+.+
T Consensus 597 ~P~ILlLDEpTSaL---------D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--------i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 597 NPKILILDEATSSL---------DNKSEYLVQKTINNLKGNENRITIIIAHRLST--------I-RYANTIFVLSNR 655 (1466)
T ss_pred CCCEEEEeCccccc---------CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--------H-HhCCEEEEEeCC
Confidence 49999999999865 44455667777777766568999999998743 5 479999999875
No 446
>PLN03140 ABC transporter G family member; Provisional
Probab=98.43 E-value=9.7e-07 Score=109.22 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=49.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC-ce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG-EK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~-~~ 365 (583)
+|+++++||+++.+ |......+++.|++++++ |.|||+++|.... .+.+.+|.++.|++ ++
T Consensus 1037 ~P~lL~LDEPTsgL---------D~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~-------~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1037 NPSIIFMDEPTSGL---------DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI-------DIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCH-------HHHHhCCEEEEEcCCCE
Confidence 59999999999866 556677888888888765 8999999998741 26678999999985 44
No 447
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=5.2e-08 Score=99.51 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=31.9
Q ss_pred CCCCceeECCCCCCCCccceecCCccccccccccc
Q 007957 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY 144 (583)
Q Consensus 110 ~~~~~~~~C~~CG~~~~~w~g~Cp~C~~w~t~~e~ 144 (583)
.+.++.|+|.+|||.+.+.+|+||+|++|+|++..
T Consensus 349 l~~~~~YRC~~CGF~a~~l~W~CPsC~~W~TikPi 383 (389)
T COG2956 349 LRRKPRYRCQNCGFTAHTLYWHCPSCRAWETIKPI 383 (389)
T ss_pred HhhcCCceecccCCcceeeeeeCCCcccccccCCc
Confidence 44588999999999999999999999999999864
No 448
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.9e-06 Score=94.03 Aligned_cols=139 Identities=16% Similarity=0.238 Sum_probs=86.6
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-------------------------------
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE------------------------------- 250 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee------------------------------- 250 (583)
.-+++|+-++|.|+||+||||+++.+..... .+| -+++++-+
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG------~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI 445 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG------SILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNI 445 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC------cEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHh
Confidence 4689999999999999999999999988876 322 34455432
Q ss_pred -------CHHHHHHHHHhcccccc------cc--------ccCCcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCC
Q 007957 251 -------SVEQIGNRADRMMIATE------EL--------FLYSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 251 -------s~~qi~~R~~rl~i~~~------~i--------~i~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
+.+++.+.+++.++.+- .+ ..++..+-+++ +...--.+|.++++||.++-+
T Consensus 446 ~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~L------- 518 (591)
T KOG0057|consen 446 KYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSAL------- 518 (591)
T ss_pred hcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCccccc-------
Confidence 22333333333333210 00 00111111111 011111258899999998755
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-+++++.+++ +..+.|+|+|.|... +-..+|.|++|++++..
T Consensus 519 --D~~TE~~i~~~i~~--~~~~rTvI~IvH~l~---------ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 519 --DSETEREILDMIMD--VMSGRTVIMIVHRLD---------LLKDFDKIIVLDNGTVK 564 (591)
T ss_pred --chhhHHHHHHHHHH--hcCCCeEEEEEecch---------hHhcCCEEEEEECCeeE
Confidence 33334577777777 456899999999874 45569999999988743
No 449
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.43 E-value=1.3e-07 Score=91.18 Aligned_cols=139 Identities=17% Similarity=0.318 Sum_probs=86.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhccccc--------------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRMMIAT--------------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl~i~~--------------~ 267 (583)
.+.+|++++|.||||+||||...++.+.+..+. + -++++.++ +.-.+..|+ ++|+.. +
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~-----G-~i~ld~~diT~lPm~~RA-rlGigYLpQE~SIFr~LtV~d 98 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS-----G-KILLDDEDITKLPMHKRA-RLGIGYLPQEASIFRKLTVED 98 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCC-----c-eEEECCcccccCChHHHh-hcCcccccccchHhhcCcHHH
Confidence 357899999999999999999999999888752 2 44455444 333333443 333221 1
Q ss_pred ccccC---Cc---c------cHHHHHHHh--------------------------cccCCCEEEEccchhhhhhcccCCC
Q 007957 268 ELFLY---SS---T------DIEDIVEKV--------------------------QPLSPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 268 ~i~i~---~~---~------~~e~i~~~i--------------------------~~~~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
|+... .. . .++.+++.. -..+|+++++||+++..
T Consensus 99 Ni~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGV-------- 170 (243)
T COG1137 99 NIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGV-------- 170 (243)
T ss_pred HHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCC--------
Confidence 11110 00 0 011222211 11259999999998754
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|+..+.++-+.+ ...++.|+-|+++-|.-++ .-.+||+...+..+..
T Consensus 171 -DPiaV~dIq~iI-~~L~~rgiGvLITDHNVRE--------tL~i~dRaYIi~~G~v 217 (243)
T COG1137 171 -DPIAVIDIQRII-KHLKDRGIGVLITDHNVRE--------TLDICDRAYIISDGKV 217 (243)
T ss_pred -CchhHHHHHHHH-HHHHhCCceEEEccccHHH--------HHhhhheEEEEecCeE
Confidence 333343333333 3334579999999999877 6779999999987764
No 450
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.41 E-value=1.8e-06 Score=88.94 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccCHHHHHH---HHHhccccccccccCCccc-HHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEESVEQIGN---RADRMMIATEELFLYSSTD-IEDIVEK 283 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees~~qi~~---R~~rl~i~~~~i~i~~~~~-~e~i~~~ 283 (583)
.++|+|+++.|||+++..+........+ +....+|+|+..-..+.+-.. -+..++.+...-. +... ...++..
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~--~~~~~~~~~~~l 140 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD--RVAKLEQQVLRL 140 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC--CHHHHHHHHHHH
Confidence 3899999999999999999887655432 122348999987554443322 2356666542211 1112 2345677
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEec
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlis 337 (583)
+...+++++||||+..++ .|+..+.+++++.|+.+..+..+++|.++
T Consensus 141 lr~~~vrmLIIDE~H~lL-------aGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLL-------AGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred HHHcCCcEEEeechHHHh-------cccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 888999999999999876 36788899999999999999999999997
No 451
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.41 E-value=1.1e-06 Score=108.85 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=47.6
Q ss_pred CCC-EEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 288 SPR-ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 288 ~p~-lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
+|+ ++++||+++.+ |......+++.|++++++ |.|||+++|.... .+.+.+|.++.|.++
T Consensus 919 ~P~~iLlLDEPTsgL---------D~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~-------~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 919 KPKLLLFLDEPTSGL---------DSQTAWSICKLMRKLADH-GQAILCTIHQPSA-------ILFEEFDRLLLLQKG 979 (1394)
T ss_pred CCCeEEEEcCCCCCC---------CHHHHHHHHHHHHHHHHc-CCEEEEEecCCCH-------HHHHhcCEEEEEcCC
Confidence 586 99999999865 555667788888888764 8999999998642 234679999999875
No 452
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.41 E-value=4.3e-06 Score=85.46 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+++++||+++.+ +......+...|.++.+ .|.+||+++|.... ++ .||.++.|.
T Consensus 190 ~p~lllLDEPtsgL---------D~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~--------i~-~aD~ii~Lg 245 (261)
T cd03271 190 GKTLYILDEPTTGL---------HFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDV--------IK-CADWIIDLG 245 (261)
T ss_pred CCcEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HH-hCCEEEEec
Confidence 37999999999865 55566677777777764 58899999998753 54 699999994
No 453
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=84.75 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=87.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccc-----------c
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIAT-----------E 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~-----------~ 267 (583)
-++.|+++.|.|.||+|||||+..+++.+.... .-+++++.+ +..+-..+..|...++ +
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~------G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieE 101 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS------GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEE 101 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCC------ceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHH
Confidence 478999999999999999999999999998753 234555443 2222111111111110 1
Q ss_pred ccc-------------------------------------------cCCcccHHHHHHH--hcccCCCEEEEccchhhhh
Q 007957 268 ELF-------------------------------------------LYSSTDIEDIVEK--VQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 268 ~i~-------------------------------------------i~~~~~~e~i~~~--i~~~~p~lVVIDsi~~l~~ 302 (583)
|+. +++... .+.+.. .--..|+++++||=++-+.
T Consensus 102 Nl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQ-RQalsL~MAtl~~pkiLLLDEHTAALD 180 (263)
T COG1101 102 NLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQ-RQALSLLMATLHPPKILLLDEHTAALD 180 (263)
T ss_pred HHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchH-HHHHHHHHHhcCCCcEEEecchhhcCC
Confidence 110 001000 111111 1234699999999988663
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 303 RGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 303 ~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.....++..-.++..+.+.|.++|+|..++ .-++-++.|.|+.++.
T Consensus 181 ---------Pkta~~vm~lT~kiV~~~klTtlMVTHnm~~--------Al~yG~RlImLh~G~I 227 (263)
T COG1101 181 ---------PKTAEFVMELTAKIVEEHKLTTLMVTHNMED--------ALDYGNRLIMLHSGKI 227 (263)
T ss_pred ---------cchHHHHHHHHHHHHHhcCCceEEEeccHHH--------HHhhCCeEEEEeCCeE
Confidence 3333455555566778899999999999865 5667889999988764
No 454
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.40 E-value=1.1e-06 Score=108.87 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=42.9
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+|+++|+||.++-+ |...-+.+...|.++....+.|+|+|+|.... ++ .||.|++|++
T Consensus 1376 ~p~ILLLDEaTSaL---------D~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--------i~-~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1376 EPKILLLDEATSSL---------DSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--------IK-RSDKIVVFNN 1433 (1466)
T ss_pred CCCEEEEeCccccc---------CHHHHHHHHHHHHHHhccCCCEEEEEechHHH--------HH-hCCEEEEEeC
Confidence 49999999999865 33334456666666643458999999998743 54 5999999987
No 455
>PTZ00243 ABC transporter; Provisional
Probab=98.40 E-value=1.1e-06 Score=109.61 Aligned_cols=135 Identities=16% Similarity=0.278 Sum_probs=80.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccc-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEE----------- 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~----------- 268 (583)
+++|+.++|.|++|+|||||+..+...+.... ..+++++.+ +.++++.+ +++-+++
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~------G~I~IDG~di~~i~l~~LR~~---I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG------GEIRVNGREIGAYGLRELRRQ---FSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC------cEEEECCEEcccCCHHHHHhc---ceEECCCCccccccHHHH
Confidence 68999999999999999999999998877642 234555432 22333322 2211111
Q ss_pred cccC---Cccc-----------------------------------HHHHH---HHhcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFLY---SSTD-----------------------------------IEDIV---EKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i~---~~~~-----------------------------------~e~i~---~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+... ++.+ -.+.+ .++-+.+++++|+||.++-.
T Consensus 1404 Idp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL------ 1477 (1560)
T PTZ00243 1404 VDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI------ 1477 (1560)
T ss_pred hCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC------
Confidence 1000 0000 01111 11222247999999998754
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
|...-+.+.+.|.+.. .++|||+|+|.... +. .||.|++|++++..
T Consensus 1478 ---D~~te~~Iq~~L~~~~--~~~TvI~IAHRl~t--------i~-~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1478 ---DPALDRQIQATVMSAF--SAYTVITIAHRLHT--------VA-QYDKIIVMDHGAVA 1523 (1560)
T ss_pred ---CHHHHHHHHHHHHHHC--CCCEEEEEeccHHH--------HH-hCCEEEEEECCEEE
Confidence 2233334444554432 37999999998743 54 49999999987653
No 456
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-06 Score=83.82 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=29.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+.+|+.+.|.|+||+|||||++.+|+.+.+.
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 4789999999999999999999999999875
No 457
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.39 E-value=3.8e-06 Score=83.58 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh---
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV--- 284 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i--- 284 (583)
..++|+|+||+||||++.+++ .+.++++.+.+...+... -.++. +.+-....++.+.+.+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~------------~~~~~~~~d~~~~~l~g~---~~~~v--~~~d~~~~~~~~~d~l~~~ 75 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP------------GKTLVLSFDMSSKVLIGD---ENVDI--ADHDDMPPIQAMVEFYVMQ 75 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC------------CCCEEEeccccchhccCC---CCCce--eecCCCCCHHHHHHHHHHH
Confidence 579999999999999999872 247778877765443210 01110 1111122233333333
Q ss_pred c--ccCCCEEEEccchhhhhh------c-ccC---CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc--cCcCCc--
Q 007957 285 Q--PLSPRALIIDSIQTVYLR------G-VAG---SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS--GDIAGP-- 348 (583)
Q Consensus 285 ~--~~~p~lVVIDsi~~l~~~------~-~~~---~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~--g~~ag~-- 348 (583)
+ ..+++.||||+++.+... . ... ...+...+.+.+..+.+..++.|+.||+++|.... .+-.|.
T Consensus 76 ~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~~~~~~de~G~~~ 155 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWELTNQSSGESGQIY 155 (220)
T ss_pred HhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEeeccccccCCCCCCc
Confidence 2 235899999999987541 0 000 11234444443333333335589999999999532 111111
Q ss_pred ------------cchheeccEEEEEe
Q 007957 349 ------------RVLEHIVDAVLYME 362 (583)
Q Consensus 349 ------------~~Le~~aD~Vl~Le 362 (583)
..+--++|.|..+.
T Consensus 156 ~r~~P~i~~K~~n~l~G~~DvV~rl~ 181 (220)
T TIGR01618 156 NRYQPDIREKVLNAFLGLTDVVGRIV 181 (220)
T ss_pred ceechhhhhhHHHhhcccccEEEEEE
Confidence 24566788888775
No 458
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.37 E-value=3e-06 Score=83.88 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=47.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ +......+...|.+++++ +.++|+++|.... +..++|.+++++++.
T Consensus 150 ~~~~~lllDEp~~~l---------D~~~~~~~~~~l~~~~~~-~~tii~itH~~~~--------~~~~~~~i~~~~~~~ 210 (213)
T cd03279 150 ARLEALFIDEGFGTL---------DPEALEAVATALELIRTE-NRMVGVISHVEEL--------KERIPQRLEVIKTPG 210 (213)
T ss_pred CCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHhC-CCEEEEEECchHH--------HHhhCcEEEEEecCC
Confidence 368999999998754 555666777777777554 8899999998754 788899999998654
No 459
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.37 E-value=7.1e-06 Score=76.77 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=45.6
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++|+++++|++++.+.++ -...++..+++++ +.|+|-++++|.-. .....+..|+||+.+..
T Consensus 158 mkpqvllfdeptaaldpe---------itaqvv~iikel~-~tgitqvivthev~--------va~k~as~vvyme~g~i 219 (242)
T COG4161 158 MEPQVLLFDEPTAALDPE---------ITAQIVSIIKELA-ETGITQVIVTHEVE--------VARKTASRVVYMENGHI 219 (242)
T ss_pred cCCcEEeecCcccccCHH---------HHHHHHHHHHHHH-hcCceEEEEEeehh--------HHHhhhhheEeeecCee
Confidence 469999999999876332 2334445555554 46999999999764 36778999999998764
No 460
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.37 E-value=4.9e-07 Score=86.99 Aligned_cols=138 Identities=20% Similarity=0.294 Sum_probs=85.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHhcccc--------------ccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADRMMIA--------------TEE 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~rl~i~--------------~~~ 268 (583)
+.+|++-.|.||||+|||||+-.|.+..... .+ -+|+.+ .+-..--..+..+.|+. .+|
T Consensus 28 v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~-----~G-~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eN 101 (249)
T COG4674 28 VDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-----EG-EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVREN 101 (249)
T ss_pred ecCCeEEEEECCCCCCceeeeeeecccCCCC-----cc-eEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHH
Confidence 5789999999999999999999998887664 23 445554 22111111122222221 011
Q ss_pred ccc---------------CCc---ccHHHHHHHhc--------------------------ccCCCEEEEccchhhhhhc
Q 007957 269 LFL---------------YSS---TDIEDIVEKVQ--------------------------PLSPRALIIDSIQTVYLRG 304 (583)
Q Consensus 269 i~i---------------~~~---~~~e~i~~~i~--------------------------~~~p~lVVIDsi~~l~~~~ 304 (583)
+.+ ... ..++++++.+. ..+|+++++|++.+.+
T Consensus 102 LelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGM--- 178 (249)
T COG4674 102 LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM--- 178 (249)
T ss_pred HHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCC---
Confidence 110 011 12333333211 1149999999998754
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 305 VAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 305 ~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
...+-.+....|+.+|. ..+|+++-|... .++.++|.|-.|..+..
T Consensus 179 ------Td~Et~~taeLl~~la~--~hsilVVEHDM~--------Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 179 ------TDAETEKTAELLKSLAG--KHSILVVEHDMG--------FVREIADKVTVLHEGSV 224 (249)
T ss_pred ------cHHHHHHHHHHHHHHhc--CceEEEEeccHH--------HHHHhhheeEEEeccce
Confidence 34445566667777775 568999999884 49999999999987664
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.36 E-value=2.1e-06 Score=88.13 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=83.6
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC-----HHHHHHHHHhccccccc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES-----VEQIGNRADRMMIATEE 268 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees-----~~qi~~R~~rl~i~~~~ 268 (583)
..|+.++..|- ..-++|.|+||+|||||+..++..+... ..-+++.+..- ..++... ..++...+
T Consensus 100 ~~l~~l~~~~~--~~~~~i~g~~g~GKttl~~~l~~~~~~~------~G~i~~~g~~v~~~d~~~ei~~~--~~~~~q~~ 169 (270)
T TIGR02858 100 KLLPYLVRNNR--VLNTLIISPPQCGKTTLLRDLARILSTG------ISQLGLRGKKVGIVDERSEIAGC--VNGVPQHD 169 (270)
T ss_pred HHHHHHHhCCC--eeEEEEEcCCCCCHHHHHHHHhCccCCC------CceEEECCEEeecchhHHHHHHH--hccccccc
Confidence 46677764321 1568999999999999999999988764 22344444331 2233221 11222222
Q ss_pred cc----cCC-cccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc
Q 007957 269 LF----LYS-STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343 (583)
Q Consensus 269 i~----i~~-~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g 343 (583)
+. +++ ....+.+..++..++|+++++||+... +.+..+.+.++ .|.++|+++|.....
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~----------------e~~~~l~~~~~-~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE----------------EDVEALLEALH-AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH----------------HHHHHHHHHHh-CCCEEEEEechhHHH
Confidence 11 111 112345667777789999999998531 22333333333 599999999965322
Q ss_pred CcCCccch-----heeccEEEEEeCc
Q 007957 344 DIAGPRVL-----EHIVDAVLYMEGE 364 (583)
Q Consensus 344 ~~ag~~~L-----e~~aD~Vl~Le~~ 364 (583)
+...-..+ ..++|++++|.+.
T Consensus 233 ~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 233 DLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred HHHhChHHHHHHhcCceEEEEEEecC
Confidence 21111111 4678999999754
No 462
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.35 E-value=6.5e-07 Score=87.84 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHH-HHHHHhccccccccc-cCC--cccHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQI-GNRADRMMIATEELF-LYS--STDIEDIV 281 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi-~~R~~rl~i~~~~i~-i~~--~~~~e~i~ 281 (583)
.|++++|.|+||+|||||+.+++........ + .|+-.+...-.. ...+..+... +.+. -.+ ..++.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~---g---~~~~~~~~~i~~~dqi~~~~~~~-d~i~~~~s~~~~e~~~l~ 100 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQI---G---CFVPAESASIPLVDRIFTRIGAE-DSISDGRSTFMAELLELK 100 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHHHHHc---C---CCccccccccCCcCEEEEEecCc-ccccCCceeHHHHHHHHH
Confidence 3599999999999999999999955432110 1 111111000000 0000000000 0000 000 11223333
Q ss_pred HHhc-ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 282 EKVQ-PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 282 ~~i~-~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
..+. ..+|+++++||++... +......+...+.+..++.+.++|+++|..
T Consensus 101 ~i~~~~~~~~llllDEp~~gl---------d~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 101 EILSLATPRSLVLIDELGRGT---------STAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred HHHHhccCCeEEEEecCCCCC---------CHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3332 2479999999998754 333344455555555556699999999975
No 463
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.33 E-value=1e-05 Score=79.35 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=44.0
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK--TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~--~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
..+|+++++||+++.+ +......+...|.+++++ .+.+||+++|.... +..+ |.|..|..
T Consensus 129 ~~~p~illlDEP~~gl---------D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~--------i~~~-d~v~~~~~ 190 (198)
T cd03276 129 VMESPFRCLDEFDVFM---------DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG--------LASS-DDVKVFRM 190 (198)
T ss_pred ccCCCEEEecCccccc---------CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc--------cccc-cceeEEEe
Confidence 4689999999998765 555667777778887665 24689999898755 5444 77777653
No 464
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=1.1e-05 Score=80.35 Aligned_cols=107 Identities=25% Similarity=0.370 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..+.|.|++|+|||+|+..++..+..... +.+|+|++.++-...+..-+.. ..++++.+.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~---~~~v~y~~~~~f~~~~~~~~~~-------------~~~~~~~~~~~-- 96 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP---GKRVVYLSAEEFIREFADALRD-------------GEIEEFKDRLR-- 96 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT---TS-EEEEEHHHHHHHHHHHHHT-------------TSHHHHHHHHC--
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc---cccceeecHHHHHHHHHHHHHc-------------ccchhhhhhhh--
Confidence 35789999999999999999998876432 5689999987655544332221 34455555554
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
..++++||.++.+. ......+.+..+.+..++.|..+|++++...
T Consensus 97 ~~DlL~iDDi~~l~---------~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 97 SADLLIIDDIQFLA---------GKQRTQEELFHLFNRLIESGKQLILTSDRPP 141 (219)
T ss_dssp TSSEEEEETGGGGT---------THHHHHHHHHHHHHHHHHTTSEEEEEESS-T
T ss_pred cCCEEEEecchhhc---------CchHHHHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 58999999998763 2333445566666666777999999987653
No 465
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.30 E-value=8.1e-06 Score=73.38 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~ 285 (583)
.+..++|.|+||+|||+|+..++..+... +.+++|++..+........... ... ..........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~ 81 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-----GAPFLYLNASDLLEGLVVAELF-GHF----------LVRLLFELAE 81 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-----CCCeEEEehhhhhhhhHHHHHh-hhh----------hHhHHHHhhc
Confidence 46789999999999999999999988643 5679999876543322211100 000 0111122233
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH----cCCCcEEEecccC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK----KTNIPVLLAGHVT 340 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk----~~g~tVIlisH~~ 340 (583)
..++.+++||+++.+. ......+...+..+.. ..++.+|++++..
T Consensus 82 ~~~~~~lilDe~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 82 KAKPGVLFIDEIDSLS----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred cCCCeEEEEeChhhhh----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4468999999998752 1112233333433322 2577888887655
No 466
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=6e-06 Score=76.44 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=28.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+.+|+++-|.||+|+|||||+.-+++.++.+
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence 4789999999999999999999999998864
No 467
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=1.5e-06 Score=78.25 Aligned_cols=121 Identities=19% Similarity=0.322 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHHH-HhccccccccccCCcccHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNRA-DRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R~-~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
.+.+++|.|++|+|||+++.+++..+..........+++|++... ....+...+ ..++..... ......-++.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHH
Confidence 467899999999999999999999886420000034688887543 344443332 444433222 0001112355666
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.+...+..+||||+++.+. . .+++..|+.++.+.++.+|++++..
T Consensus 82 ~l~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp HHHHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTCSCBEEEEEEESST
T ss_pred HHHhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHhCCCCeEEEEEChh
Confidence 6666767899999999853 0 4667777778779999999998764
No 468
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.29 E-value=7e-06 Score=79.63 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=91.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--------------CCCccEEEEeCccCHHHHHHH---------H
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--------------GEPSPVVYVSGEESVEQIGNR---------A 259 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~--------------~~~~~VLyis~Ees~~qi~~R---------~ 259 (583)
-+|.|+-.++.|.||+|||||+..+++......+. .......|+.+|-+......+ +
T Consensus 36 dlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa 115 (291)
T KOG2355|consen 36 DLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA 115 (291)
T ss_pred ccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccH
Confidence 36899999999999999999999998765432110 011234455544322211111 0
Q ss_pred Hh--ccc---ccc-----------cc----ccCCcccHHHHHHHhccc-CCCEEEEccchhhhhhcccCCCCCHHHHHHH
Q 007957 260 DR--MMI---ATE-----------EL----FLYSSTDIEDIVEKVQPL-SPRALIIDSIQTVYLRGVAGSAGGLMQVKEC 318 (583)
Q Consensus 260 ~r--l~i---~~~-----------~i----~i~~~~~~e~i~~~i~~~-~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei 318 (583)
.. +++ +++ ++ .-+++..-.++--.+--. ..+++++|+++--+ +......+
T Consensus 116 e~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDL---------DVlARadL 186 (291)
T KOG2355|consen 116 EHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDL---------DVLARADL 186 (291)
T ss_pred HHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeeh---------HHHHHHHH
Confidence 00 010 000 00 001111222222222222 35899999997533 55566778
Q ss_pred HHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 319 TSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 319 ~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+..|+.-+.++|+||+..+|.... ++..+..+.++..++.
T Consensus 187 LeFlkeEce~RgatIVYATHIFDG--------Le~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 187 LEFLKEECEQRGATIVYATHIFDG--------LETWPTHLVYIKSGKL 226 (291)
T ss_pred HHHHHHHHhhcCcEEEEEeeeccc--------hhhcchhEEEecCCee
Confidence 889999999999999999999976 9999999999988775
No 469
>PRK12377 putative replication protein; Provisional
Probab=98.28 E-value=5.6e-06 Score=84.01 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..++|.|+||+|||+|+..++..+... +..|+|++..+-...++.... ......++++.+ .
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-----g~~v~~i~~~~l~~~l~~~~~------------~~~~~~~~l~~l--~ 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-----GRSVIVVTVPDVMSRLHESYD------------NGQSGEKFLQEL--C 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEHHHHHHHHHHHHh------------ccchHHHHHHHh--c
Confidence 468999999999999999999998864 678999998765555443211 111233444444 4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
++++||||++.... .+.. ..+++..+.+...+...++|+++..+-
T Consensus 163 ~~dLLiIDDlg~~~--------~s~~-~~~~l~~ii~~R~~~~~ptiitSNl~~ 207 (248)
T PRK12377 163 KVDLLVLDEIGIQR--------ETKN-EQVVLNQIIDRRTASMRSVGMLTNLNH 207 (248)
T ss_pred CCCEEEEcCCCCCC--------CCHH-HHHHHHHHHHHHHhcCCCEEEEcCCCH
Confidence 68999999997532 1222 345666777766666789999988763
No 470
>PF13173 AAA_14: AAA domain
Probab=98.28 E-value=6.2e-06 Score=74.92 Aligned_cols=97 Identities=25% Similarity=0.393 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+.+++|.|+.|+|||||+.+++..+.. +.+++|++.++....-... ....+.+.+. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~------~~~~~yi~~~~~~~~~~~~---------------~~~~~~~~~~-~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP------PENILYINFDDPRDRRLAD---------------PDLLEYFLEL-IK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc------cccceeeccCCHHHHHHhh---------------hhhHHHHHHh-hc
Confidence 468999999999999999999988762 4579999998765521110 0011222222 11
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEecccC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT-NIPVLLAGHVT 340 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~-g~tVIlisH~~ 340 (583)
.+..+|+||++|.+- .....++.+.... ++.+++++...
T Consensus 60 ~~~~~i~iDEiq~~~---------------~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLP---------------DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred cCCcEEEEehhhhhc---------------cHHHHHHHHHHhccCceEEEEccch
Confidence 267899999999641 2333444444443 68888887654
No 471
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.24 E-value=5e-06 Score=87.96 Aligned_cols=146 Identities=18% Similarity=0.301 Sum_probs=92.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC---CCccE--------EEEeCcc--------CHHHHHH------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG---EPSPV--------VYVSGEE--------SVEQIGN------ 257 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~---~~~~V--------Lyis~Ee--------s~~qi~~------ 257 (583)
-+.+|+++.|.|.+|+||||++..+++.......+. ..++| ..+.+|. -.+++..
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~ 484 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLN 484 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchh
Confidence 468999999999999999999999998865321100 00011 0111211 0111111
Q ss_pred ----HHHhccccccccccC-----CcccH-HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 007957 258 ----RADRMMIATEELFLY-----SSTDI-EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK 327 (583)
Q Consensus 258 ----R~~rl~i~~~~i~i~-----~~~~~-e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk 327 (583)
-+.+.|+++.-++.- +...- ..-++.+-..+|.++++|++.+.+ |......+++.+.++|+
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhL---------D~~TA~rVArkiselaR 555 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHL---------DELTAVRVARKISELAR 555 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhc---------CHHHHHHHHHHHHHHHH
Confidence 123444444433321 11111 122334445679999999998876 55667789999999999
Q ss_pred cCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCce
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEK 365 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~ 365 (583)
+.++|+++++|...- +..+ .|+++++..+.
T Consensus 556 e~giTlivvThrpEv--------~~AL~PD~li~vgYg~ 586 (593)
T COG2401 556 EAGITLIVVTHRPEV--------GNALRPDTLILVGYGK 586 (593)
T ss_pred HhCCeEEEEecCHHH--------HhccCCceeEEeeccc
Confidence 999999999998743 5556 79999886554
No 472
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.24 E-value=8.3e-06 Score=82.56 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..++|.|+||+|||+|+..++..+... +..|+|++..+-...++.... -.....+++++.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-----g~~v~~it~~~l~~~l~~~~~-----------~~~~~~~~~l~~l~-- 161 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-----GKSVLIITVADIMSAMKDTFS-----------NSETSEEQLLNDLS-- 161 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEHHHHHHHHHHHHh-----------hccccHHHHHHHhc--
Confidence 368999999999999999999998874 678999976443333322110 01223445665554
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc--CcCCccchheec---cEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG--DIAGPRVLEHIV---DAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g--~~ag~~~Le~~a---D~Vl~Le 362 (583)
++++||||++.... .+. ...+++..+.+.--+.+.++|+++..+.+. ..-|.+.+..+. -.++.|+
T Consensus 162 ~~dlLvIDDig~~~--------~s~-~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~ 232 (244)
T PRK07952 162 NVDLLVIDEIGVQT--------ESR-YEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFN 232 (244)
T ss_pred cCCEEEEeCCCCCC--------CCH-HHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEee
Confidence 68999999997632 121 123566667766556678999998877431 112444455443 2344454
Q ss_pred C
Q 007957 363 G 363 (583)
Q Consensus 363 ~ 363 (583)
+
T Consensus 233 ~ 233 (244)
T PRK07952 233 W 233 (244)
T ss_pred C
Confidence 4
No 473
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=1.9e-06 Score=83.07 Aligned_cols=107 Identities=15% Similarity=0.276 Sum_probs=64.6
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
..+.-++|.|++|+|||.|+..++..+... +.+|+|++..+-.+.+ +... .....++++..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-----g~~v~f~~~~~L~~~l----~~~~---------~~~~~~~~~~~l 106 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-----GYSVLFITASDLLDEL----KQSR---------SDGSYEELLKRL 106 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEHHHHHHHH----HCCH---------CCTTHCHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-----CcceeEeecCceeccc----cccc---------cccchhhhcCcc
Confidence 456779999999999999999999988874 7889999865433333 2211 112233444444
Q ss_pred cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
. ++++||||++.... .+. ...+.+..+.+...+. .++|+++..+.
T Consensus 107 ~--~~dlLilDDlG~~~--------~~~-~~~~~l~~ii~~R~~~-~~tIiTSN~~~ 151 (178)
T PF01695_consen 107 K--RVDLLILDDLGYEP--------LSE-WEAELLFEIIDERYER-KPTIITSNLSP 151 (178)
T ss_dssp H--TSSCEEEETCTSS-----------H-HHHHCTHHHHHHHHHT--EEEEEESS-H
T ss_pred c--cccEecccccceee--------ecc-cccccchhhhhHhhcc-cCeEeeCCCch
Confidence 3 58999999997532 122 2334455555555553 47777887763
No 474
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=1.1e-05 Score=87.08 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=63.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCCcccHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYSSTDIED 279 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~~~~~e~ 279 (583)
..++.+++|.|++|+||||++.++|..+... .+.+|.+++++. ..+|+...++.++++.. ...+...
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~~~~~~~ 290 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----PVKDIKK 290 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----ehHHHHH
Confidence 3467899999999999999999999876432 267899999887 45667777777776532 1223455
Q ss_pred HHHHhcccCCCEEEEccch
Q 007957 280 IVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 280 i~~~i~~~~p~lVVIDsi~ 298 (583)
+.+.+...++++||||...
T Consensus 291 l~~~l~~~~~D~VLIDTaG 309 (432)
T PRK12724 291 FKETLARDGSELILIDTAG 309 (432)
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 6666666789999999854
No 475
>PLN03232 ABC transporter C family member; Provisional
Probab=98.22 E-value=4.1e-06 Score=104.57 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=84.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCcc-----------------CHHHHHHHHHhccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEE-----------------SVEQIGNRADRMMI 264 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ee-----------------s~~qi~~R~~rl~i 264 (583)
+++|+.++|.|++|+|||||+..+++.+....+. .-.+.+.|++-+. +.+++..-++..++
T Consensus 640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L 719 (1495)
T PLN03232 640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTAL 719 (1495)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 5899999999999999999999999988765321 0123577776542 12222222222222
Q ss_pred cc-------cccccCCc-------ccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC
Q 007957 265 AT-------EELFLYSS-------TDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329 (583)
Q Consensus 265 ~~-------~~i~i~~~-------~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~ 329 (583)
.. ..-..+.+ ..-+++ ++..--.+|+++++|++++.. |...-+.+.+.+..... .
T Consensus 720 ~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL---------D~~t~~~I~~~~l~~~l-~ 789 (1495)
T PLN03232 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL---------DAHVAHQVFDSCMKDEL-K 789 (1495)
T ss_pred HHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc---------CHHHHHHHHHHHhhhhh-c
Confidence 11 00011111 111221 122223479999999998765 32223344444333222 4
Q ss_pred CCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 330 g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.|+|+++|.... + ..||.|+.|++++.
T Consensus 790 ~kT~IlvTH~~~~--------l-~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 790 GKTRVLVTNQLHF--------L-PLMDRIILVSEGMI 817 (1495)
T ss_pred CCEEEEEECChhh--------H-HhCCEEEEEeCCEE
Confidence 7899999997632 4 45999999987764
No 476
>PRK06921 hypothetical protein; Provisional
Probab=98.21 E-value=8.8e-06 Score=83.52 Aligned_cols=132 Identities=23% Similarity=0.352 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+..++|.|++|+|||+|+..++..+... .+..|+|++..+...++.... ...++.++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~----~g~~v~y~~~~~l~~~l~~~~---------------~~~~~~~~~~-- 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK----KGVPVLYFPFVEGFGDLKDDF---------------DLLEAKLNRM-- 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh----cCceEEEEEHHHHHHHHHHHH---------------HHHHHHHHHh--
Confidence 5678999999999999999999988763 156899999754443332211 1122333333
Q ss_pred cCCCEEEEccchhhhhhcccCCCC-CHHHHHHHHHHHHHHHHcCCCcEEEecccCCcc--Cc---CCccchheeccEEEE
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAG-GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG--DI---AGPRVLEHIVDAVLY 360 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g-~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g--~~---ag~~~Le~~aD~Vl~ 360 (583)
.++++||||+++.-+ .+.+. +..+ .+.+..+.+.....+.++|++++..-+. .+ -.++.++...+.++.
T Consensus 176 ~~~dlLiIDDl~~~~----~g~e~~t~~~-~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~ 250 (266)
T PRK06921 176 KKVEVLFIDDLFKPV----NGKPRATEWQ-IEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIVEMCKDYLVI 250 (266)
T ss_pred cCCCEEEEecccccc----CCCccCCHHH-HHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEE
Confidence 368999999995311 11111 2222 2344556666666678899998876431 11 112333434445555
Q ss_pred EeCc
Q 007957 361 MEGE 364 (583)
Q Consensus 361 Le~~ 364 (583)
+.++
T Consensus 251 ~~g~ 254 (266)
T PRK06921 251 IKGD 254 (266)
T ss_pred ecCc
Confidence 6544
No 477
>PRK08181 transposase; Validated
Probab=98.19 E-value=8.1e-06 Score=83.81 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=70.6
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
..+.-++|.|+||+|||+|+..++..+... +..|+|++..+-..++..-. .....++++..+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-----g~~v~f~~~~~L~~~l~~a~-------------~~~~~~~~l~~l 165 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN-----GWRVLFTRTTDLVQKLQVAR-------------RELQLESAIAKL 165 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc-----CCceeeeeHHHHHHHHHHHH-------------hCCcHHHHHHHH
Confidence 456779999999999999999999888764 67899998755444442210 122344444443
Q ss_pred cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
.++++||||++.... .+.. ..+.+..|.+...+ +.++|++++..-.
T Consensus 166 --~~~dLLIIDDlg~~~--------~~~~-~~~~Lf~lin~R~~-~~s~IiTSN~~~~ 211 (269)
T PRK08181 166 --DKFDLLILDDLAYVT--------KDQA-ETSVLFELISARYE-RRSILITANQPFG 211 (269)
T ss_pred --hcCCEEEEecccccc--------CCHH-HHHHHHHHHHHHHh-CCCEEEEcCCCHH
Confidence 358999999997542 1222 23444555554444 3688888877643
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.19 E-value=7.2e-06 Score=73.57 Aligned_cols=105 Identities=23% Similarity=0.386 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcccC-
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS- 288 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~~- 288 (583)
++|.|+||+|||+++..++..+. .++++++..+.... ........+..++..+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--------~~~~~i~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--------FPFIEIDGSELISS--------------YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--------SEEEEEETTHHHTS--------------STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--------cccccccccccccc--------------ccccccccccccccccccccc
Confidence 58999999999999999998864 35888886543211 00011234555666665555
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc-----CCCcEEEeccc
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK-----TNIPVLLAGHV 339 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~-----~g~tVIlisH~ 339 (583)
|.+++||++..+.... ..........+...|...... .++.+|++++.
T Consensus 59 ~~vl~iDe~d~l~~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS---QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SEEEEEETGGGTSHHC---STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ceeeeeccchhccccc---ccccccccccccceeeecccccccccccceeEEeeCC
Confidence 8999999999887554 111222233344444443322 23566666554
No 479
>PRK06893 DNA replication initiation factor; Validated
Probab=98.18 E-value=9.5e-06 Score=81.35 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..+.|.|+||+|||+|+..++..+... +.++.|++.+...... .++++.+ .
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-----~~~~~y~~~~~~~~~~----------------------~~~~~~~--~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-----QRTAIYIPLSKSQYFS----------------------PAVLENL--E 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEeeHHHhhhhh----------------------HHHHhhc--c
Confidence 468999999999999999999998764 5689999875321100 1122222 2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
++++|+||+++.+. ++.. ..+.+..+.+..++.+.+++++++..
T Consensus 91 ~~dlLilDDi~~~~--------~~~~-~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 91 QQDLVCLDDLQAVI--------GNEE-WELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cCCEEEEeChhhhc--------CChH-HHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 57899999998753 1211 12234444555556677776665544
No 480
>PLN03130 ABC transporter C family member; Provisional
Probab=98.18 E-value=7.3e-06 Score=102.78 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=85.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCC-CCccEEEEeCcc-----------------CHHHHHHHHHhcc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLG-EPSPVVYVSGEE-----------------SVEQIGNRADRMM 263 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~-~~~~VLyis~Ee-----------------s~~qi~~R~~rl~ 263 (583)
-+++|++++|.|++|+|||||+..+++.+.... |.. -.+.+.|++-+. +.+++..-++..+
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~ 718 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTA 718 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhC
Confidence 368999999999999999999999999988753 210 013566766442 1222222223222
Q ss_pred cccc-------ccccCCc-------ccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHH-HHHH
Q 007957 264 IATE-------ELFLYSS-------TDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALL-RFAK 327 (583)
Q Consensus 264 i~~~-------~i~i~~~-------~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~-~lAk 327 (583)
+..+ .-..+++ ..-++ .++..--.+++++++|++++-. |...-+.+...+. .+.
T Consensus 719 L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL---------D~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL---------DAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred cHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc---------CHHHHHHHHHHHhhHHh-
Confidence 2110 0111111 11122 1222223479999999998755 3332334444332 232
Q ss_pred cCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.|+|+++|.... + ..||.|+.|++++.
T Consensus 789 -~~kTvIlVTH~l~~--------l-~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 789 -RGKTRVLVTNQLHF--------L-SQVDRIILVHEGMI 817 (1622)
T ss_pred -cCCEEEEEECCHhH--------H-HhCCEEEEEeCCEE
Confidence 37899999998732 4 45999999998765
No 481
>PRK09183 transposase/IS protein; Provisional
Probab=98.17 E-value=1.1e-05 Score=82.42 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=66.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
+..|+.++|.|+||+|||+|+..++..+... +..|+|++..+-..++..... ...+..++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-----G~~v~~~~~~~l~~~l~~a~~-------------~~~~~~~~~~ 160 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-----GIKVRFTTAADLLLQLSTAQR-------------QGRYKTTLQR 160 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeHHHHHHHHHHHHH-------------CCcHHHHHHH
Confidence 6788999999999999999999998776653 678999986543333321100 1123333322
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
. ...++++|||++...- .+..+. +.+..+.+...+.+ ++|++++..-
T Consensus 161 ~-~~~~dlLiiDdlg~~~--------~~~~~~-~~lf~li~~r~~~~-s~iiTsn~~~ 207 (259)
T PRK09183 161 G-VMAPRLLIIDEIGYLP--------FSQEEA-NLFFQVIAKRYEKG-SMILTSNLPF 207 (259)
T ss_pred H-hcCCCEEEEcccccCC--------CChHHH-HHHHHHHHHHHhcC-cEEEecCCCH
Confidence 2 2468999999996431 122222 23333443333333 5778777764
No 482
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.16 E-value=1.8e-06 Score=78.78 Aligned_cols=31 Identities=42% Similarity=0.646 Sum_probs=28.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+.+|++++|.|++|+|||||+..+++.....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~ 38 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPD 38 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHES
T ss_pred EcCCCEEEEEccCCCccccceeeeccccccc
Confidence 5789999999999999999999999887653
No 483
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1.2e-05 Score=76.07 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=83.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc--------cCHHHHHHHHHhccccccccccCCc-
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE--------ESVEQIGNRADRMMIATEELFLYSS- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E--------es~~qi~~R~~rl~i~~~~i~i~~~- 274 (583)
+..|+.+++.|++|+|||||++.+-+++..+. +.++.--.+ ++.+-+.-|-..+|+..+-+++++.
T Consensus 34 V~aGECvvL~G~SG~GKStllr~LYaNY~~d~-----G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV 108 (235)
T COG4778 34 VNAGECVVLHGPSGSGKSTLLRSLYANYLPDE-----GQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRV 108 (235)
T ss_pred ecCccEEEeeCCCCCcHHHHHHHHHhccCCCC-----ceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCc
Confidence 56799999999999999999999999988863 233322221 1222223333333332221111100
Q ss_pred -----------------cc----HHHHHHHh-------------------------c--ccCCCEEEEccchhhhhhccc
Q 007957 275 -----------------TD----IEDIVEKV-------------------------Q--PLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 275 -----------------~~----~e~i~~~i-------------------------~--~~~p~lVVIDsi~~l~~~~~~ 306 (583)
+. ...++..+ . -.+..++++|++++.+..
T Consensus 109 ~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa--- 185 (235)
T COG4778 109 SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA--- 185 (235)
T ss_pred chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccc---
Confidence 00 00111111 0 013679999999876521
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.-+..+-.|.+-+|..|++++-|=|... .-++.||+++.+..
T Consensus 186 -------~Nr~vVveli~e~Ka~GaAlvGIFHDee--------vre~vadR~~~~~~ 227 (235)
T COG4778 186 -------TNRAVVVELIREAKARGAALVGIFHDEE--------VREAVADRLLDVSA 227 (235)
T ss_pred -------cchHHHHHHHHHHHhcCceEEEeeccHH--------HHHHHhhheeeccc
Confidence 1246677888899999999999988763 36889999988753
No 484
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=86.15 Aligned_cols=136 Identities=20% Similarity=0.210 Sum_probs=91.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc-------ccc---------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-------ATE--------- 267 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i-------~~~--------- 267 (583)
..+|.+++|.|+||+||||.+..+++.+.++.+..+ .+.+.+++..++..-.+ -..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--------~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q 168 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--------DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ 168 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--------CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence 368999999999999999999999999988654111 11233333333211000 000
Q ss_pred -----------------------------------------ccccCCcccHHHH-HHHhcccCCCEEEEccchhhhhhcc
Q 007957 268 -----------------------------------------ELFLYSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGV 305 (583)
Q Consensus 268 -----------------------------------------~i~i~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~ 305 (583)
++.-++..+++++ +.+....++++.++|++++.+
T Consensus 169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyL---- 244 (591)
T COG1245 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL---- 244 (591)
T ss_pred HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccc----
Confidence 0011122223332 222334468999999998755
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+..|...+++.++.+++. +.+|+++-|... .|..++|.|-.+++..
T Consensus 245 -----Di~qRl~~ar~Irel~~~-~k~ViVVEHDLa--------vLD~lsD~vhI~YG~p 290 (591)
T COG1245 245 -----DIRQRLNAARVIRELAED-GKYVIVVEHDLA--------VLDYLSDFVHILYGEP 290 (591)
T ss_pred -----cHHHHHHHHHHHHHHhcc-CCeEEEEechHH--------HHHHhhheeEEEecCC
Confidence 777878888888899887 899999999874 4999999999998765
No 485
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.15 E-value=2.7e-06 Score=84.97 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=71.3
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH-HHhccccccccccCCc--ccHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR-ADRMMIATEELFLYSS--TDIEDIV 281 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R-~~rl~i~~~~i~i~~~--~~~e~i~ 281 (583)
..+++++|.|++|+|||||+++++.......- + .|+..+...-.+..+ +.+++.......-++. ....++.
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~~~la~~---g---~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQI---G---CFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHHHHh---C---CCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 46889999999999999999999876443210 1 233332211111111 1223322111000111 1122333
Q ss_pred HHhc-ccCCCEEEEccch---hhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccE
Q 007957 282 EKVQ-PLSPRALIIDSIQ---TVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357 (583)
Q Consensus 282 ~~i~-~~~p~lVVIDsi~---~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~ 357 (583)
..+. ..++++|++||+. +.. +..... ...+..++++.++++|+++|. .+ +..++|.
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~l---------D~~~~~--~~il~~l~~~~~~~vlisTH~-~e--------l~~~~~~ 161 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTY---------DGFGLA--WAIAEYIATQIKCFCLFATHF-HE--------LTALADE 161 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChH---------HHHHHH--HHHHHHHHhcCCCeEEEEech-HH--------HHHHhhc
Confidence 3332 2479999999994 322 111111 122234444568999999996 33 7778888
Q ss_pred EEEEeC
Q 007957 358 VLYMEG 363 (583)
Q Consensus 358 Vl~Le~ 363 (583)
+..+..
T Consensus 162 ~~~i~~ 167 (222)
T cd03285 162 VPNVKN 167 (222)
T ss_pred CCCeEE
Confidence 776654
No 486
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.15 E-value=1.1e-05 Score=90.31 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=86.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC---CCCccEEEEeCcc--------------------CHHHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL---GEPSPVVYVSGEE--------------------SVEQIGNRA 259 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~---~~~~~VLyis~Ee--------------------s~~qi~~R~ 259 (583)
.+++|+-++|.|++|+|||||++.+|+...-+.+. ..+..++|++-.. +.+++..-+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 45899999999999999999999999987765431 1244578876542 122333333
Q ss_pred Hhccccc--ccc-------ccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc-
Q 007957 260 DRMMIAT--EEL-------FLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK- 328 (583)
Q Consensus 260 ~rl~i~~--~~i-------~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~- 328 (583)
...++.. +.+ .+++..+-++ ..+.+--++|+++|+||-+.-+++ +.-..|.++.++
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe-------------~~e~~l~q~l~~~ 561 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE-------------ETEDRLYQLLKEE 561 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh-------------HHHHHHHHHHHhh
Confidence 3333221 000 0112211111 223344568999999999876522 122344455555
Q ss_pred -CCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 329 -TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 329 -~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
.+++||-|+|... +.+..+..+.+.+.
T Consensus 562 lp~~tvISV~Hr~t---------l~~~h~~~l~l~~~ 589 (604)
T COG4178 562 LPDATVISVGHRPT---------LWNFHSRQLELLDD 589 (604)
T ss_pred CCCCEEEEeccchh---------hHHHHhhheeeccc
Confidence 7999999999985 67777777776543
No 487
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.14 E-value=8e-06 Score=101.95 Aligned_cols=142 Identities=17% Similarity=0.242 Sum_probs=82.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCccCH--HHHHHHH---------------Hhcccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEESV--EQIGNRA---------------DRMMIA 265 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ees~--~qi~~R~---------------~rl~i~ 265 (583)
+++|++++|.|++|+|||||+..+++.+....|.. -++.+.|+.-+... ..++... +..++.
T Consensus 449 i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~ 528 (1490)
T TIGR01271 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLE 528 (1490)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHH
Confidence 58899999999999999999999999887653310 01246666544210 0111110 111110
Q ss_pred ccccc---------------cCCcccHHHH-HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH-HHHHHHc
Q 007957 266 TEELF---------------LYSSTDIEDI-VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA-LLRFAKK 328 (583)
Q Consensus 266 ~~~i~---------------i~~~~~~e~i-~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~-L~~lAk~ 328 (583)
. .+. -++...-.++ +...--.+|+++++|++.+.. |....+.+... +..+.
T Consensus 529 ~-~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL---------D~~~~~~i~~~~l~~~~-- 596 (1490)
T TIGR01271 529 E-DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL---------DVVTEKEIFESCLCKLM-- 596 (1490)
T ss_pred H-HHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHh--
Confidence 0 000 0111111111 111222469999999998765 33344445543 33443
Q ss_pred CCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 329 TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 329 ~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.|+|+++|.... ++. ||.|+.|++++.
T Consensus 597 ~~~tvilvtH~~~~--------~~~-ad~ii~l~~g~i 625 (1490)
T TIGR01271 597 SNKTRILVTSKLEH--------LKK-ADKILLLHEGVC 625 (1490)
T ss_pred cCCeEEEEeCChHH--------HHh-CCEEEEEECCEE
Confidence 38999999999754 554 999999987654
No 488
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.14 E-value=6.3e-06 Score=103.08 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=85.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCccC-----H------------HHHHHHHHhccc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEES-----V------------EQIGNRADRMMI 264 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ees-----~------------~qi~~R~~rl~i 264 (583)
-+++|++++|.|++|+|||||+..+++.+....|.. -++.+.|++-+.. . +......+...+
T Consensus 660 ~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l 739 (1522)
T TIGR00957 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACAL 739 (1522)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 358999999999999999999999999877653310 0124666654421 0 111111111111
Q ss_pred ccccccc---------------CCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH-H
Q 007957 265 ATEELFL---------------YSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA-K 327 (583)
Q Consensus 265 ~~~~i~i---------------~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA-k 327 (583)
. +.+.. ++...-++ .+...--.+|+++++|++++.+ |....+.+.+.+.... .
T Consensus 740 ~-~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL---------D~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 740 L-PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV---------DAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred H-HHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc---------CHHHHHHHHHHHhhhhhh
Confidence 0 00000 11111122 1222223479999999998765 4444556666665421 1
Q ss_pred cCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
..+.|+|+++|.... +.+ ||.|+.|++++.
T Consensus 810 ~~~~tvIlvTH~~~~--------l~~-~D~ii~l~~G~i 839 (1522)
T TIGR00957 810 LKNKTRILVTHGISY--------LPQ-VDVIIVMSGGKI 839 (1522)
T ss_pred hcCCEEEEEeCChhh--------hhh-CCEEEEecCCeE
Confidence 247899999998753 655 999999987764
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.13 E-value=1.1e-05 Score=87.31 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=69.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
|+.++.-++|.|+||+|||+|+..+|..... ..+.+.+. ++... ..+ -....+.+++.
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--------~fi~i~~s----~l~~k--~~g--------e~~~~lr~lf~ 232 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--------TFIRVVGS----EFVQK--YLG--------EGPRMVRDVFR 232 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEehH----HHHHH--hcc--------hhHHHHHHHHH
Confidence 6888888999999999999999999876432 34444432 11111 001 01223556777
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH----HcCCCcEEEecccC
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA----KKTNIPVLLAGHVT 340 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA----k~~g~tVIlisH~~ 340 (583)
.+....|.+|+||++..+.........+....+...+..|.... ...++.||+++|..
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 77778899999999998764332222222233333333333322 33466677777654
No 490
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=1.8e-05 Score=95.81 Aligned_cols=149 Identities=19% Similarity=0.285 Sum_probs=89.8
Q ss_pred hhhhHHhcC---CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcc---
Q 007957 194 NEVARVLGG---GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMM--- 263 (583)
Q Consensus 194 ~eLD~vLgG---Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~--- 263 (583)
++++-||.| =+.+|+-++|+|++|+|||||++.+-...-.. ...++|++-+ ..++++.|+.-+-
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~------~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA------EGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc------CCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 556777766 58899999999999999999999998776653 2466777543 4556666542211
Q ss_pred --------ccccccccCCcccHH-----------------------------------HHHHHhc--ccCCCEEEEccch
Q 007957 264 --------IATEELFLYSSTDIE-----------------------------------DIVEKVQ--PLSPRALIIDSIQ 298 (583)
Q Consensus 264 --------i~~~~i~i~~~~~~e-----------------------------------~i~~~i~--~~~p~lVVIDsi~ 298 (583)
.+.+.+.-+++.++- +++-..+ -.+.+++|+||-+
T Consensus 1224 vLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1224 VLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 011111111111111 1111111 1247899999998
Q ss_pred hhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceece
Q 007957 299 TVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368 (583)
Q Consensus 299 ~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~ 368 (583)
+..+. +...+++.-.+-+= .+|||+.|+|.-.. + -.+|+|++|+.++..+
T Consensus 1304 AsVD~----------~TD~lIQ~tIR~~F-~dcTVltIAHRl~T--------V-md~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1304 ASVDP----------ETDALIQKTIREEF-KDCTVLTIAHRLNT--------V-MDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred ccCCh----------HHHHHHHHHHHHHh-cCCeEEEEeeccch--------h-hhcCeEEEeeCCeEee
Confidence 75422 12233333333222 28999999998753 2 3599999999987543
No 491
>PTZ00243 ABC transporter; Provisional
Probab=98.12 E-value=6.9e-06 Score=102.75 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=81.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCccCH--HHHHHH---------------HHhccc-
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEESV--EQIGNR---------------ADRMMI- 264 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ees~--~qi~~R---------------~~rl~i- 264 (583)
+++|++++|.|++|+|||||+..+++.+....|.. -...+.|+.-+... ..++.. ++..++
T Consensus 683 i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~ 762 (1560)
T PTZ00243 683 VPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLE 762 (1560)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhH
Confidence 58999999999999999999999998876643210 01246666543210 001110 010010
Q ss_pred ----------cc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC
Q 007957 265 ----------AT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 265 ----------~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g 330 (583)
.. +...-++.....+ .+...--.+|+++++|++++.+ |......++..+..... .+
T Consensus 763 ~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL---------D~~~~~~i~~~~~~~~~-~~ 832 (1560)
T PTZ00243 763 ADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL---------DAHVGERVVEECFLGAL-AG 832 (1560)
T ss_pred HHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC---------CHHHHHHHHHHHHHHhh-CC
Confidence 00 0000011111111 1111222469999999998765 33333445444332222 38
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.|+|+++|.... +. .||.|+.|++++.
T Consensus 833 ~TvIlvTH~~~~--------~~-~ad~ii~l~~G~i 859 (1560)
T PTZ00243 833 KTRVLATHQVHV--------VP-RADYVVALGDGRV 859 (1560)
T ss_pred CEEEEEeCCHHH--------HH-hCCEEEEEECCEE
Confidence 999999998743 54 5999999997764
No 492
>PRK08727 hypothetical protein; Validated
Probab=98.10 E-value=1.6e-05 Score=79.88 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=64.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
...+.|.|++|+|||+|+..++..+... +.++.|++.++....+ .++++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~-----~~~~~y~~~~~~~~~~----------------------~~~~~~l-- 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA-----GRSSAYLPLQAAAGRL----------------------RDALEAL-- 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCcEEEEeHHHhhhhH----------------------HHHHHHH--
Confidence 3569999999999999999999887764 6789999865422211 1122222
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.++++||||+++.+. +..... +.+..+.+..++.+.++|++++..
T Consensus 92 ~~~dlLiIDDi~~l~--------~~~~~~-~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 92 EGRSLVALDGLESIA--------GQREDE-VALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred hcCCEEEEeCccccc--------CChHHH-HHHHHHHHHHHHcCCeEEEECCCC
Confidence 246899999998642 122222 233356666677788899988753
No 493
>PRK08116 hypothetical protein; Validated
Probab=98.09 E-value=2.8e-05 Score=79.92 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+.-++|.|++|+|||+|+..++..+... +.+|+|++..+-...+...... ....+..++++.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-----~~~v~~~~~~~ll~~i~~~~~~----------~~~~~~~~~~~~l~- 177 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-----GVPVIFVNFPQLLNRIKSTYKS----------SGKEDENEIIRSLV- 177 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHHHHHHHhc----------cccccHHHHHHHhc-
Confidence 3458999999999999999999998864 5789999865433333321110 01123344555443
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
++++||||+++... .+.... +.+..+.+...+.+.++|+++...
T Consensus 178 -~~dlLviDDlg~e~--------~t~~~~-~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 -NADLLILDDLGAER--------DTEWAR-EKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CCCEEEEecccCCC--------CCHHHH-HHHHHHHHHHHHCCCCEEEECCCC
Confidence 46899999997521 122222 334445554456688999998765
No 494
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.07 E-value=1.9e-05 Score=76.18 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=44.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.+|+++++||+...+ +......+...|.+++++ +.++|+++|.... + ..+|.++.+++
T Consensus 115 ~~p~llilDEp~~~L---------D~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~--------~-~~adrvi~i~~ 172 (178)
T cd03239 115 KPSPFYVLDEIDAAL---------DPTNRRRVSDMIKEMAKH-TSQFIVITLKKEM--------F-ENADKLIGVLF 172 (178)
T ss_pred CCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--------H-hhCCeEEEEEE
Confidence 579999999998765 455556677777777654 7899999998632 4 47999999986
No 495
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.07 E-value=1.2e-05 Score=77.92 Aligned_cols=143 Identities=18% Similarity=0.276 Sum_probs=86.0
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH-HHhcccc--ccccc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR-ADRMMIA--TEELF 270 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R-~~rl~i~--~~~i~ 270 (583)
++....|.-=+..|..++|.|++|+|||||+..++..+.. ..+++.+ |+..+ +... ....++. .....
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~------~~~~i~i--ed~~E-~~~~~~~~~~~~~~~~~~~ 82 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP------DERIITI--EDTAE-LQLPHPNWVRLVTRPGNVE 82 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC------CCCEEEE--CCccc-cCCCCCCEEEEEEecCCCC
Confidence 3344444334577899999999999999999999887764 3455555 33322 1110 0111111 11111
Q ss_pred cCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCc-EEEecccCCccC-----
Q 007957 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP-VLLAGHVTKSGD----- 344 (583)
Q Consensus 271 i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~t-VIlisH~~k~g~----- 344 (583)
.....++.+++......+|++++++|+.. . +.. .+.+.+ ..|.. ++.+-|.....+
T Consensus 83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~------------~----ea~-~~~~a~-~tGh~g~~~T~Ha~s~~~~~~Rl 144 (186)
T cd01130 83 GSGEVTMADLLRSALRMRPDRIIVGEVRG------------G----EAL-DLLQAM-NTGHPGGMTTIHANSAEEALTRL 144 (186)
T ss_pred CCCccCHHHHHHHHhccCCCEEEEEccCc------------H----HHH-HHHHHH-hcCCCCceeeecCCCHHHHHHHH
Confidence 12335677788777788999999999953 1 222 233333 56777 888888876421
Q ss_pred ----cCCc-------cchheeccEEEEEeC
Q 007957 345 ----IAGP-------RVLEHIVDAVLYMEG 363 (583)
Q Consensus 345 ----~ag~-------~~Le~~aD~Vl~Le~ 363 (583)
..++ ..+....|.|++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~i~~~~d~vi~~~~ 174 (186)
T cd01130 145 ELLPSNVPLGRPLLREQIKEAIDVIVHIAR 174 (186)
T ss_pred HHHHhhcCccHHHHHHHHHHhCCEEEEEEE
Confidence 1122 236777899998875
No 496
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-05 Score=82.65 Aligned_cols=123 Identities=24% Similarity=0.360 Sum_probs=79.7
Q ss_pred hhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC
Q 007957 193 GNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY 272 (583)
Q Consensus 193 ~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~ 272 (583)
.+||-+-+ |+.|-.=++|+||||+|||.|++.+|..... .-+-+.+.+ +..++ +| -
T Consensus 173 ~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A--------tFIrvvgSE----lVqKY--iG--------E 228 (406)
T COG1222 173 NPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTDA--------TFIRVVGSE----LVQKY--IG--------E 228 (406)
T ss_pred CHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhccCc--------eEEEeccHH----HHHHH--hc--------c
Confidence 36777777 7888888999999999999999998866432 345555433 22221 00 0
Q ss_pred CcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHH----HHHcCCCcEEEeccc
Q 007957 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR----FAKKTNIPVLLAGHV 339 (583)
Q Consensus 273 ~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~----lAk~~g~tVIlisH~ 339 (583)
...-+.++.+..+++.|.+|+||+|.++-...+++..+...++.+.+-.|.+ |-...++-||+.+..
T Consensus 229 GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 229 GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 1223577888999999999999999998665555544545444444433333 223345667766543
No 497
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=3.1e-05 Score=76.49 Aligned_cols=113 Identities=27% Similarity=0.394 Sum_probs=73.8
Q ss_pred cCCeE-EEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc---------CHHHHHHHHHhccccccccccCC-
Q 007957 205 VPGSL-VLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE---------SVEQIGNRADRMMIATEELFLYS- 273 (583)
Q Consensus 205 ~~Gsv-ilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee---------s~~qi~~R~~rl~i~~~~i~i~~- 273 (583)
..|-+ ++|.|+|++|||||++.+|..++.+...-.+.+|..++... +..+...|++ +++
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~d----------Vld~ 203 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMD----------VLDP 203 (308)
T ss_pred hcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhh----------hccc
Confidence 44556 89999999999999999999988642222356788886421 1111122211 222
Q ss_pred cccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccC
Q 007957 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344 (583)
Q Consensus 274 ~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~ 344 (583)
...-+-++.+++.+.|+++|+|+|.+.. ++.. +.. |-..|+-++-+.|-+.-.+
T Consensus 204 cpk~~gmmmaIrsm~PEViIvDEIGt~~---------------d~~A-~~t-a~~~GVkli~TaHG~~ied 257 (308)
T COG3854 204 CPKAEGMMMAIRSMSPEVIIVDEIGTEE---------------DALA-ILT-ALHAGVKLITTAHGNGIED 257 (308)
T ss_pred chHHHHHHHHHHhcCCcEEEEeccccHH---------------HHHH-HHH-HHhcCcEEEEeeccccHHH
Confidence 2334668888999999999999998753 1222 222 2346999999999875433
No 498
>PRK06526 transposase; Provisional
Probab=98.06 E-value=1.4e-05 Score=81.36 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=66.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
..+.-++|.|+||+|||+|+..++..++.. +.+|+|++..+-.+++... . ....+.+.+..+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~-----g~~v~f~t~~~l~~~l~~~----~---------~~~~~~~~l~~l 157 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA-----GHRVLFATAAQWVARLAAA----H---------HAGRLQAELVKL 157 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC-----CCchhhhhHHHHHHHHHHH----H---------hcCcHHHHHHHh
Confidence 456679999999999999999999888764 6789897765433333211 0 111223333333
Q ss_pred cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
.++++||||++.... .+. ...+.+..+.+...+. .++|++++..-
T Consensus 158 --~~~dlLIIDD~g~~~--------~~~-~~~~~L~~li~~r~~~-~s~IitSn~~~ 202 (254)
T PRK06526 158 --GRYPLLIVDEVGYIP--------FEP-EAANLFFQLVSSRYER-ASLIVTSNKPF 202 (254)
T ss_pred --ccCCEEEEcccccCC--------CCH-HHHHHHHHHHHHHHhc-CCEEEEcCCCH
Confidence 358999999997532 122 2234455555444443 46888877764
No 499
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.05 E-value=2.4e-05 Score=76.63 Aligned_cols=108 Identities=24% Similarity=0.348 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcccC
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~~ 288 (583)
+++|+|++|+||||++..++..+... .+..+ +..|++.+..... .+-.+...++- .....+.+.+......+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~----~~~~i--~t~e~~~E~~~~~-~~~~i~q~~vg-~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN----KTHHI--LTIEDPIEFVHES-KRSLINQREVG-LDTLSFENALKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc----CCcEE--EEEcCCccccccC-ccceeeecccC-CCccCHHHHHHHHhcCC
Confidence 79999999999999999988887643 12233 3445554322111 00000000110 11234666666666678
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
|+++++||+.. . +.+..+.+.+ ..|..++.+.|...
T Consensus 75 pd~ii~gEird------------~----e~~~~~l~~a-~~G~~v~~t~Ha~~ 110 (198)
T cd01131 75 PDVILVGEMRD------------L----ETIRLALTAA-ETGHLVMSTLHTNS 110 (198)
T ss_pred cCEEEEcCCCC------------H----HHHHHHHHHH-HcCCEEEEEecCCc
Confidence 99999999852 1 2334444444 46888999999874
No 500
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.05 E-value=3.8e-05 Score=80.38 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+.-+.|.|++|+|||.|+..++..++.. +.+|.|++..+-..+++... ...++.+.++.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~-----g~~v~~~~~~~l~~~lk~~~-------------~~~~~~~~l~~l~- 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK-----GVSSTLLHFPEFIRELKNSI-------------SDGSVKEKIDAVK- 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCCEEEEEHHHHHHHHHHHH-------------hcCcHHHHHHHhc-
Confidence 4568999999999999999999999864 67899998754333333221 1223445555443
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
++++||||++...- .+.....+++..+.+.-...+.++|+++..+-
T Consensus 217 -~~dlLiIDDiG~e~--------~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~ 262 (306)
T PRK08939 217 -EAPVLMLDDIGAEQ--------MSSWVRDEVLGVILQYRMQEELPTFFTSNFDF 262 (306)
T ss_pred -CCCEEEEecCCCcc--------ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCH
Confidence 58999999997531 12333335666666555456889999988773
Done!