Query 007957
Match_columns 583
No_of_seqs 582 out of 4475
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m6a_A ATP-dependent protease 100.0 3.6E-39 1.2E-43 358.9 14.6 194 386-582 325-532 (543)
2 1xhk_A Putative protease LA ho 100.0 8.3E-35 2.8E-39 280.6 18.0 165 414-581 3-185 (187)
3 1rre_A ATP-dependent protease 100.0 1.1E-34 3.7E-39 282.1 16.4 167 414-581 8-188 (200)
4 1z0w_A Putative protease LA ho 100.0 7.1E-34 2.4E-38 277.7 18.2 168 415-582 10-188 (207)
5 2x36_A LON protease homolog, m 100.0 2.6E-33 9E-38 273.4 16.6 167 414-581 7-196 (207)
6 3k1j_A LON protease, ATP-depen 100.0 4.1E-33 1.4E-37 314.0 14.2 168 414-581 400-578 (604)
7 2zts_A Putative uncharacterize 100.0 3.6E-28 1.2E-32 241.1 18.3 210 183-405 9-251 (251)
8 3hr8_A Protein RECA; alpha and 100.0 8.8E-28 3E-32 253.1 17.0 240 169-423 27-295 (356)
9 2dr3_A UPF0273 protein PH0284; 99.9 3.7E-26 1.3E-30 226.3 19.8 205 184-405 3-240 (247)
10 3bh0_A DNAB-like replicative h 99.9 3.5E-26 1.2E-30 237.7 18.4 199 183-392 48-301 (315)
11 1n0w_A DNA repair protein RAD5 99.9 7.3E-26 2.5E-30 223.9 16.0 210 184-399 4-242 (243)
12 2cvh_A DNA repair and recombin 99.9 3.6E-25 1.2E-29 215.6 19.3 201 185-398 1-219 (220)
13 3lda_A DNA repair protein RAD5 99.9 1.1E-25 3.8E-30 240.8 16.9 212 183-400 157-397 (400)
14 2i1q_A DNA repair and recombin 99.9 2.7E-25 9.4E-30 231.1 16.2 208 183-396 77-321 (322)
15 2z43_A DNA repair and recombin 99.9 3.8E-25 1.3E-29 230.7 17.0 211 183-399 86-323 (324)
16 1v5w_A DMC1, meiotic recombina 99.9 3.2E-25 1.1E-29 233.1 16.3 211 183-399 101-342 (343)
17 3bgw_A DNAB-like replicative h 99.9 5.7E-25 2E-29 238.8 17.4 198 183-391 177-429 (444)
18 4a74_A DNA repair and recombin 99.9 8.7E-25 3E-29 214.2 16.9 203 184-396 5-230 (231)
19 4a1f_A DNAB helicase, replicat 99.9 1.5E-25 5E-30 234.6 11.4 197 184-391 27-309 (338)
20 1q57_A DNA primase/helicase; d 99.9 2.3E-24 8E-29 237.5 20.2 213 183-404 221-488 (503)
21 2zr9_A Protein RECA, recombina 99.9 4E-24 1.4E-28 225.3 19.2 217 169-398 28-273 (349)
22 2q6t_A DNAB replication FORK h 99.9 6.2E-24 2.1E-28 230.7 19.6 198 184-389 181-430 (444)
23 2r6a_A DNAB helicase, replicat 99.9 6.5E-24 2.2E-28 231.2 18.7 200 184-392 184-434 (454)
24 3cmw_A Protein RECA, recombina 99.9 4.8E-24 1.6E-28 259.1 18.7 217 169-398 699-944 (1706)
25 2w0m_A SSO2452; RECA, SSPF, un 99.9 1.7E-23 5.8E-28 204.8 18.7 199 184-399 3-231 (235)
26 1u94_A RECA protein, recombina 99.9 2E-23 6.9E-28 220.3 19.2 218 169-399 30-276 (356)
27 1xp8_A RECA protein, recombina 99.9 2.3E-23 7.9E-28 220.6 17.6 207 183-399 52-288 (366)
28 3io5_A Recombination and repai 99.9 2.1E-23 7.2E-28 214.5 16.6 206 184-399 5-245 (333)
29 1cr0_A DNA primase/helicase; R 99.9 7.8E-23 2.7E-27 209.7 19.9 212 184-404 15-281 (296)
30 1pzn_A RAD51, DNA repair and r 99.9 6.9E-23 2.3E-27 215.9 17.9 208 183-396 110-348 (349)
31 1tf7_A KAIC; homohexamer, hexa 99.9 1.3E-22 4.5E-27 224.8 20.4 205 183-402 260-483 (525)
32 3cmw_A Protein RECA, recombina 99.9 6E-23 2E-27 249.5 18.4 216 169-397 350-594 (1706)
33 3cmu_A Protein RECA, recombina 99.9 7E-23 2.4E-27 251.1 18.2 217 169-398 350-595 (2050)
34 2ehv_A Hypothetical protein PH 99.9 4E-22 1.4E-26 197.7 18.9 202 184-399 10-246 (251)
35 3cmu_A Protein RECA, recombina 99.8 9.2E-21 3.2E-25 232.5 17.2 204 183-397 710-943 (2050)
36 1nlf_A Regulatory protein REPA 99.8 2E-20 7E-25 190.3 16.8 205 184-398 11-262 (279)
37 3bs4_A Uncharacterized protein 99.7 6.4E-17 2.2E-21 163.1 16.8 192 185-392 2-245 (260)
38 1tf7_A KAIC; homohexamer, hexa 99.6 5.7E-15 1.9E-19 163.5 18.0 200 184-398 19-247 (525)
39 3gfo_A Cobalt import ATP-bindi 99.3 5E-12 1.7E-16 128.6 13.0 140 204-366 31-222 (275)
40 2vhj_A Ntpase P4, P4; non- hyd 99.3 5.4E-13 1.9E-17 137.8 4.8 127 185-340 105-236 (331)
41 3tui_C Methionine import ATP-b 99.3 6.4E-12 2.2E-16 132.4 11.7 140 204-366 51-242 (366)
42 3tif_A Uncharacterized ABC tra 99.3 2E-11 6.8E-16 121.3 12.1 139 204-366 28-223 (235)
43 1vpl_A ABC transporter, ATP-bi 99.3 1E-11 3.5E-16 125.1 9.2 139 204-366 38-224 (256)
44 4g1u_C Hemin import ATP-bindin 99.3 6.1E-12 2.1E-16 127.4 7.6 140 204-366 34-226 (266)
45 2olj_A Amino acid ABC transpor 99.2 1.5E-11 5E-16 124.4 10.2 61 288-366 177-237 (263)
46 1g6h_A High-affinity branched- 99.2 3.9E-11 1.3E-15 120.8 13.1 61 288-366 171-231 (257)
47 2pcj_A ABC transporter, lipopr 99.2 2.8E-11 9.4E-16 119.4 11.4 138 204-366 27-217 (224)
48 1b0u_A Histidine permease; ABC 99.2 4.8E-11 1.7E-15 120.5 11.3 61 288-366 171-231 (262)
49 3fvq_A Fe(3+) IONS import ATP- 99.2 1.2E-11 4.1E-16 130.1 6.7 63 287-366 155-217 (359)
50 3rlf_A Maltose/maltodextrin im 99.2 1.3E-11 4.5E-16 130.8 6.4 140 204-366 26-212 (381)
51 1ji0_A ABC transporter; ATP bi 99.2 3.6E-11 1.2E-15 119.8 8.9 137 204-366 29-217 (240)
52 2qi9_C Vitamin B12 import ATP- 99.2 8.7E-11 3E-15 117.8 10.2 135 204-366 23-211 (249)
53 2yyz_A Sugar ABC transporter, 99.2 4.2E-11 1.4E-15 126.2 8.2 63 287-366 150-212 (359)
54 2yz2_A Putative ABC transporte 99.2 1.7E-10 5.9E-15 116.6 12.5 137 204-366 30-216 (266)
55 3d31_A Sulfate/molybdate ABC t 99.1 4.8E-11 1.6E-15 125.3 8.2 139 204-366 23-206 (348)
56 2onk_A Molybdate/tungstate ABC 99.1 3.3E-11 1.1E-15 120.2 6.6 63 287-366 143-205 (240)
57 1z47_A CYSA, putative ABC-tran 99.1 3.3E-11 1.1E-15 126.7 6.8 146 204-366 38-224 (355)
58 2ihy_A ABC transporter, ATP-bi 99.1 6.7E-11 2.3E-15 120.5 8.9 61 288-366 179-241 (279)
59 2it1_A 362AA long hypothetical 99.1 4.7E-11 1.6E-15 125.9 7.7 146 204-366 26-212 (362)
60 1v43_A Sugar-binding transport 99.1 5.2E-11 1.8E-15 126.0 7.3 146 204-366 34-220 (372)
61 2nq2_C Hypothetical ABC transp 99.1 1.2E-10 4E-15 117.0 8.3 145 204-365 28-206 (253)
62 1g29_1 MALK, maltose transport 99.1 4.8E-11 1.7E-15 126.3 5.8 63 287-366 156-218 (372)
63 1oxx_K GLCV, glucose, ABC tran 99.1 2.6E-11 8.9E-16 127.6 3.5 63 287-366 157-219 (353)
64 2b8t_A Thymidine kinase; deoxy 99.1 2E-10 6.8E-15 113.3 8.4 135 205-362 10-150 (223)
65 2ixe_A Antigen peptide transpo 99.1 1.1E-10 3.7E-15 118.5 6.7 137 203-366 41-234 (271)
66 2ff7_A Alpha-hemolysin translo 99.1 2.3E-10 7.7E-15 114.6 8.3 134 204-366 32-221 (247)
67 2d2e_A SUFC protein; ABC-ATPas 99.0 7.7E-10 2.6E-14 110.8 9.6 61 288-366 161-222 (250)
68 3nh6_A ATP-binding cassette SU 99.0 2.5E-10 8.7E-15 117.7 5.9 135 203-366 76-266 (306)
69 2pjz_A Hypothetical protein ST 99.0 2.3E-09 7.7E-14 108.3 12.0 140 204-366 28-204 (263)
70 3ozx_A RNAse L inhibitor; ATP 99.0 6.5E-10 2.2E-14 123.2 8.6 144 203-363 290-461 (538)
71 1sgw_A Putative ABC transporte 99.0 6.7E-10 2.3E-14 108.8 7.5 141 204-362 32-207 (214)
72 2zu0_C Probable ATP-dependent 99.0 8.3E-10 2.8E-14 111.7 8.3 62 287-366 181-243 (267)
73 2ghi_A Transport protein; mult 98.9 1.2E-09 4E-14 110.2 7.6 59 288-366 173-231 (260)
74 3j16_B RLI1P; ribosome recycli 98.9 3.2E-09 1.1E-13 119.1 11.5 145 202-363 373-543 (608)
75 3bk7_A ABC transporter ATP-bin 98.9 5.3E-09 1.8E-13 117.4 12.8 143 204-363 379-547 (607)
76 1mv5_A LMRA, multidrug resista 98.9 2.1E-09 7.3E-14 107.1 7.8 60 287-366 156-215 (243)
77 1yqt_A RNAse L inhibitor; ATP- 98.9 5.6E-09 1.9E-13 115.7 12.0 143 204-363 309-477 (538)
78 2cbz_A Multidrug resistance-as 98.9 3.6E-09 1.2E-13 105.1 8.2 143 204-366 28-206 (237)
79 3ec2_A DNA replication protein 98.9 8E-09 2.7E-13 97.2 10.1 112 203-342 34-145 (180)
80 1yqt_A RNAse L inhibitor; ATP- 98.9 9E-09 3.1E-13 114.1 12.0 60 286-363 174-233 (538)
81 3b5x_A Lipid A export ATP-bind 98.8 6.3E-09 2.1E-13 116.4 10.3 59 288-366 498-556 (582)
82 3b60_A Lipid A export ATP-bind 98.8 9.3E-09 3.2E-13 115.1 11.5 135 203-366 365-556 (582)
83 2pze_A Cystic fibrosis transme 98.8 3.2E-09 1.1E-13 104.9 6.6 143 204-366 31-207 (229)
84 3j16_B RLI1P; ribosome recycli 98.8 3.9E-09 1.3E-13 118.5 8.0 61 287-365 238-298 (608)
85 3bk7_A ABC transporter ATP-bin 98.8 1.3E-08 4.4E-13 114.3 12.0 60 287-364 245-304 (607)
86 3gd7_A Fusion complex of cysti 98.8 6.7E-09 2.3E-13 110.5 9.1 133 204-366 44-231 (390)
87 3ozx_A RNAse L inhibitor; ATP 98.8 1.3E-08 4.3E-13 112.9 11.1 60 286-364 154-213 (538)
88 3qf4_B Uncharacterized ABC tra 98.7 8.5E-09 2.9E-13 115.8 7.1 134 204-366 378-567 (598)
89 4a82_A Cystic fibrosis transme 98.7 9.9E-09 3.4E-13 114.7 7.0 135 203-366 363-553 (578)
90 4gp7_A Metallophosphoesterase; 98.7 6E-09 2.1E-13 97.9 4.3 129 204-341 6-160 (171)
91 2yl4_A ATP-binding cassette SU 98.7 1.3E-08 4.5E-13 114.1 7.8 135 203-366 366-559 (595)
92 3qf4_A ABC transporter, ATP-bi 98.7 9.8E-09 3.3E-13 115.0 6.4 134 204-366 366-555 (587)
93 2iw3_A Elongation factor 3A; a 98.7 5.9E-08 2E-12 113.5 13.1 143 203-366 457-623 (986)
94 2bbs_A Cystic fibrosis transme 98.6 1.7E-08 6E-13 103.2 5.6 143 204-366 61-236 (290)
95 2kjq_A DNAA-related protein; s 98.6 6.1E-08 2.1E-12 89.2 7.2 90 206-340 35-125 (149)
96 2iw3_A Elongation factor 3A; a 98.5 1.6E-07 5.3E-12 110.0 8.2 59 287-366 918-976 (986)
97 3g5u_A MCG1178, multidrug resi 98.5 1.3E-07 4.4E-12 114.8 7.5 59 288-366 1189-1247(1284)
98 3g5u_A MCG1178, multidrug resi 98.4 2.2E-07 7.5E-12 112.8 8.6 135 203-366 412-602 (1284)
99 2orw_A Thymidine kinase; TMTK, 98.4 1E-07 3.5E-12 90.9 4.0 130 206-362 2-137 (184)
100 3ux8_A Excinuclease ABC, A sub 98.4 3.4E-07 1.2E-11 104.0 9.0 56 288-362 220-277 (670)
101 1znw_A Guanylate kinase, GMP k 98.4 2.8E-08 9.7E-13 95.9 -0.2 44 312-363 160-203 (207)
102 4f4c_A Multidrug resistance pr 98.4 1.4E-07 4.9E-12 114.7 5.7 137 203-368 1101-1295(1321)
103 4f4c_A Multidrug resistance pr 98.4 5.4E-07 1.8E-11 109.7 10.3 136 203-367 440-631 (1321)
104 2vf7_A UVRA2, excinuclease ABC 98.4 1E-06 3.4E-11 102.0 11.9 55 289-362 752-806 (842)
105 3b9q_A Chloroplast SRP recepto 98.3 2.8E-06 9.6E-11 87.3 12.4 41 204-249 97-137 (302)
106 3ux8_A Excinuclease ABC, A sub 98.3 4.5E-07 1.6E-11 103.0 6.7 56 288-362 564-619 (670)
107 1xx6_A Thymidine kinase; NESG, 98.3 2.1E-06 7E-11 82.5 10.3 134 205-362 6-142 (191)
108 2j9r_A Thymidine kinase; TK1, 98.3 2.2E-06 7.6E-11 83.5 10.0 132 205-363 26-163 (214)
109 2og2_A Putative signal recogni 98.3 5E-06 1.7E-10 87.4 12.5 42 204-250 154-195 (359)
110 1w4r_A Thymidine kinase; type 98.2 2.1E-06 7E-11 82.5 8.3 129 205-362 18-151 (195)
111 4aby_A DNA repair protein RECN 98.2 2.8E-06 9.5E-11 90.4 10.2 57 287-363 312-370 (415)
112 3jvv_A Twitching mobility prot 98.2 4.7E-06 1.6E-10 87.5 11.4 124 204-361 120-243 (356)
113 3e70_C DPA, signal recognition 98.2 9.7E-06 3.3E-10 84.2 12.6 55 205-264 127-185 (328)
114 2eyu_A Twitching motility prot 98.2 1.3E-05 4.4E-10 80.6 13.0 130 195-362 16-146 (261)
115 1l8q_A Chromosomal replication 98.2 1.1E-05 3.8E-10 82.8 12.5 116 196-340 26-141 (324)
116 2r6f_A Excinuclease ABC subuni 98.2 7E-06 2.4E-10 95.6 12.0 55 289-362 867-921 (972)
117 3pih_A Uvrabc system protein A 98.1 1.8E-05 6.3E-10 92.3 15.2 56 288-362 826-881 (916)
118 2pt7_A CAG-ALFA; ATPase, prote 98.1 6.5E-07 2.2E-11 93.2 2.7 107 204-341 168-276 (330)
119 2ygr_A Uvrabc system protein A 98.1 9.1E-06 3.1E-10 95.0 12.5 55 289-362 885-939 (993)
120 2orv_A Thymidine kinase; TP4A 98.1 1.2E-05 4.2E-10 79.1 11.6 128 206-362 18-150 (234)
121 3bos_A Putative DNA replicatio 98.1 5.7E-06 1.9E-10 80.0 8.9 107 194-340 41-148 (242)
122 3b85_A Phosphate starvation-in 98.1 6.9E-07 2.3E-11 86.9 2.0 32 204-236 19-50 (208)
123 1c9k_A COBU, adenosylcobinamid 98.1 6E-06 2E-10 78.4 7.7 144 209-364 1-174 (180)
124 2yhs_A FTSY, cell division pro 98.1 1.4E-05 4.8E-10 87.0 11.7 42 204-250 290-331 (503)
125 1e69_A Chromosome segregation 98.0 3.1E-05 1.1E-09 79.8 13.1 58 287-364 240-299 (322)
126 2w58_A DNAI, primosome compone 98.0 3.7E-06 1.3E-10 80.1 5.6 105 208-340 55-159 (202)
127 3thx_A DNA mismatch repair pro 98.0 7.2E-07 2.4E-11 104.4 0.6 136 204-363 659-799 (934)
128 1fnn_A CDC6P, cell division co 98.0 2.3E-05 7.8E-10 81.7 12.1 117 209-340 46-169 (389)
129 3h4m_A Proteasome-activating n 98.0 1E-05 3.4E-10 81.3 8.6 78 203-302 47-124 (285)
130 3e2i_A Thymidine kinase; Zn-bi 98.0 1.7E-05 5.7E-10 77.3 9.7 134 205-362 26-162 (219)
131 3kl4_A SRP54, signal recogniti 98.0 2.8E-05 9.7E-10 83.6 12.3 99 194-299 77-190 (433)
132 1vma_A Cell division protein F 98.0 5.2E-05 1.8E-09 77.9 13.9 98 194-298 85-196 (306)
133 3qf7_A RAD50; ABC-ATPase, ATPa 98.0 1.9E-05 6.5E-10 83.1 10.5 61 287-366 302-362 (365)
134 4b4t_J 26S protease regulatory 98.0 7.3E-06 2.5E-10 87.2 7.3 120 194-338 171-295 (405)
135 2z4s_A Chromosomal replication 98.0 3.1E-05 1.1E-09 83.5 12.3 108 207-340 130-237 (440)
136 3cf0_A Transitional endoplasmi 98.0 1E-05 3.6E-10 82.6 8.1 79 202-302 44-122 (301)
137 3thx_B DNA mismatch repair pro 98.0 7.2E-06 2.5E-10 95.8 7.7 122 204-341 670-797 (918)
138 2qby_A CDC6 homolog 1, cell di 98.0 2E-05 7E-10 81.6 10.4 123 205-340 43-173 (386)
139 2npi_A Protein CLP1; CLP1-PCF1 98.0 1.6E-06 5.5E-11 94.2 2.0 31 204-234 135-165 (460)
140 2ewv_A Twitching motility prot 98.0 2.6E-05 8.8E-10 82.4 10.8 112 204-341 133-245 (372)
141 1rj9_A FTSY, signal recognitio 97.9 5.2E-05 1.8E-09 77.8 12.4 39 206-249 101-139 (304)
142 1j8m_F SRP54, signal recogniti 97.9 5.1E-05 1.8E-09 77.6 12.2 99 194-299 78-191 (297)
143 4b4t_K 26S protease regulatory 97.9 2.2E-05 7.5E-10 84.3 8.9 114 203-339 202-320 (428)
144 1ye8_A Protein THEP1, hypothet 97.9 1.5E-05 5.3E-10 75.3 6.7 24 209-232 2-25 (178)
145 4b4t_L 26S protease subunit RP 97.9 1.9E-05 6.4E-10 85.0 8.2 78 203-303 211-289 (437)
146 2o8b_B DNA mismatch repair pro 97.9 1.6E-05 5.5E-10 94.1 8.2 131 207-361 789-925 (1022)
147 1xwi_A SKD1 protein; VPS4B, AA 97.9 4.3E-05 1.5E-09 78.9 10.6 81 201-302 39-119 (322)
148 2i3b_A HCR-ntpase, human cance 97.9 2.3E-06 7.8E-11 81.9 0.7 26 207-232 1-26 (189)
149 2ce7_A Cell division protein F 97.9 2E-05 6.9E-10 85.8 7.9 136 201-363 45-185 (476)
150 4b4t_I 26S protease regulatory 97.9 3.5E-05 1.2E-09 82.4 9.5 80 202-304 211-291 (437)
151 4b4t_M 26S protease regulatory 97.8 2.9E-05 9.9E-10 83.5 8.5 115 203-340 211-330 (434)
152 1sxj_E Activator 1 40 kDa subu 97.8 4.1E-05 1.4E-09 79.2 9.1 23 210-232 39-61 (354)
153 1lv7_A FTSH; alpha/beta domain 97.8 0.00011 3.8E-09 72.6 11.7 76 203-302 43-118 (257)
154 2v1u_A Cell division control p 97.8 5.7E-05 2E-09 78.4 9.8 125 206-340 43-177 (387)
155 3dm5_A SRP54, signal recogniti 97.8 0.00013 4.6E-09 78.4 12.6 98 194-298 81-192 (443)
156 2px0_A Flagellar biosynthesis 97.8 6.2E-05 2.1E-09 76.9 9.4 84 206-297 104-191 (296)
157 2p65_A Hypothetical protein PF 97.8 1.6E-05 5.5E-10 73.5 4.4 116 207-339 43-161 (187)
158 2r8r_A Sensor protein; KDPD, P 97.8 4.8E-05 1.6E-09 74.7 8.0 117 206-341 4-128 (228)
159 1jbk_A CLPB protein; beta barr 97.7 2.9E-05 1E-09 71.7 6.0 117 206-340 42-161 (195)
160 2qgz_A Helicase loader, putati 97.7 1.4E-05 4.7E-10 82.3 4.0 106 207-340 152-258 (308)
161 2qby_B CDC6 homolog 3, cell di 97.7 0.00015 5.1E-09 75.5 12.1 129 197-340 37-174 (384)
162 3eie_A Vacuolar protein sortin 97.7 4.8E-05 1.6E-09 78.3 8.2 80 201-302 45-124 (322)
163 4b4t_H 26S protease regulatory 97.7 4.3E-05 1.5E-09 82.5 8.0 78 203-303 239-317 (467)
164 2qz4_A Paraplegin; AAA+, SPG7, 97.7 4.7E-05 1.6E-09 75.1 7.6 77 203-301 35-111 (262)
165 3t15_A Ribulose bisphosphate c 97.7 7.2E-05 2.5E-09 76.1 8.6 78 203-302 32-113 (293)
166 1wb9_A DNA mismatch repair pro 97.7 3.7E-05 1.3E-09 88.8 6.6 29 205-233 605-633 (800)
167 1ixz_A ATP-dependent metallopr 97.6 0.00013 4.4E-09 72.0 9.4 75 203-301 47-121 (254)
168 1g5t_A COB(I)alamin adenosyltr 97.6 0.00037 1.3E-08 66.9 11.8 133 209-365 30-181 (196)
169 2qp9_X Vacuolar protein sortin 97.6 6.7E-05 2.3E-09 78.5 7.0 78 202-301 79-156 (355)
170 3vfd_A Spastin; ATPase, microt 97.6 0.00026 8.7E-09 74.8 11.2 76 205-302 146-221 (389)
171 3aez_A Pantothenate kinase; tr 97.6 0.0001 3.5E-09 76.0 7.5 44 204-250 87-130 (312)
172 1zu4_A FTSY; GTPase, signal re 97.6 0.00051 1.7E-08 70.9 12.9 41 205-250 103-143 (320)
173 2zan_A Vacuolar protein sortin 97.6 9.5E-05 3.3E-09 79.8 7.7 79 202-301 162-240 (444)
174 3b9p_A CG5977-PA, isoform A; A 97.6 0.00018 6E-09 72.6 9.0 75 205-302 52-127 (297)
175 1ls1_A Signal recognition part 97.6 0.00053 1.8E-08 69.9 12.6 89 206-299 97-191 (295)
176 3syl_A Protein CBBX; photosynt 97.5 0.00033 1.1E-08 70.8 10.5 79 205-301 65-143 (309)
177 2fna_A Conserved hypothetical 97.5 0.00052 1.8E-08 70.1 11.5 46 194-250 20-65 (357)
178 1s96_A Guanylate kinase, GMP k 97.5 0.00033 1.1E-08 68.3 9.4 29 204-232 13-41 (219)
179 1ewq_A DNA mismatch repair pro 97.5 0.0003 1E-08 80.8 10.2 26 207-232 576-601 (765)
180 3cf2_A TER ATPase, transitiona 97.4 8.4E-05 2.9E-09 85.6 5.3 79 202-302 233-311 (806)
181 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0003 1E-08 77.0 9.4 75 202-301 61-136 (499)
182 1lw7_A Transcriptional regulat 97.4 6.4E-05 2.2E-09 78.9 3.3 148 203-361 164-341 (365)
183 1iy2_A ATP-dependent metallopr 97.4 0.00026 8.9E-09 71.0 7.6 75 203-301 71-145 (278)
184 3n70_A Transport activator; si 97.4 0.00017 5.8E-09 65.3 5.6 27 207-233 24-50 (145)
185 2chg_A Replication factor C sm 97.4 0.0015 5.1E-08 61.5 12.3 38 194-233 27-64 (226)
186 3uk6_A RUVB-like 2; hexameric 97.3 0.00075 2.6E-08 69.9 10.8 38 196-233 59-96 (368)
187 4fcw_A Chaperone protein CLPB; 97.3 0.00061 2.1E-08 68.8 9.7 85 207-300 47-131 (311)
188 2x8a_A Nuclear valosin-contain 97.3 0.00028 9.5E-09 71.1 6.9 75 203-301 42-116 (274)
189 3d8b_A Fidgetin-like protein 1 97.3 0.0003 1E-08 73.4 7.4 76 205-302 115-190 (357)
190 2v3c_C SRP54, signal recogniti 97.3 0.00035 1.2E-08 75.1 7.7 99 194-299 79-191 (432)
191 1njg_A DNA polymerase III subu 97.3 0.001 3.4E-08 63.4 9.8 26 208-233 46-71 (250)
192 1tq4_A IIGP1, interferon-induc 97.3 5.2E-05 1.8E-09 81.1 0.7 27 208-234 70-96 (413)
193 1d2n_A N-ethylmaleimide-sensit 97.2 0.00079 2.7E-08 67.1 9.2 77 204-301 61-137 (272)
194 1sxj_A Activator 1 95 kDa subu 97.2 0.00095 3.3E-08 73.2 10.6 112 206-341 76-190 (516)
195 1w5s_A Origin recognition comp 97.2 0.0012 4.1E-08 69.2 10.6 95 206-301 49-151 (412)
196 3te6_A Regulatory protein SIR3 97.2 0.0019 6.4E-08 66.6 11.8 129 195-340 35-173 (318)
197 2j37_W Signal recognition part 97.2 0.0022 7.7E-08 70.1 12.9 99 194-299 81-194 (504)
198 2qen_A Walker-type ATPase; unk 97.1 0.0021 7.1E-08 65.5 11.4 34 207-250 31-64 (350)
199 3cf2_A TER ATPase, transitiona 97.1 0.00028 9.7E-09 81.2 5.1 80 201-302 505-584 (806)
200 2ffh_A Protein (FFH); SRP54, s 97.1 0.0019 6.6E-08 69.1 11.2 89 206-299 97-191 (425)
201 2xxa_A Signal recognition part 97.1 0.0019 6.4E-08 69.5 11.1 102 194-299 80-194 (433)
202 3hu3_A Transitional endoplasmi 97.1 0.00059 2E-08 74.5 7.0 78 203-302 234-311 (489)
203 1zp6_A Hypothetical protein AT 97.1 0.00031 1.1E-08 65.8 4.0 40 203-250 5-44 (191)
204 2pnl_A Protease VP4; acyl-enzy 97.1 0.0012 4.2E-08 61.6 7.7 69 476-548 105-174 (203)
205 2r2a_A Uncharacterized protein 97.0 0.0017 5.9E-08 62.3 8.7 140 208-363 6-152 (199)
206 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00095 3.2E-08 66.5 7.1 39 206-249 3-41 (260)
207 1sxj_B Activator 1 37 kDa subu 97.0 0.0017 5.7E-08 65.6 8.8 51 194-249 31-81 (323)
208 1htw_A HI0065; nucleotide-bind 97.0 0.00049 1.7E-08 63.6 4.2 29 203-231 29-57 (158)
209 1ofh_A ATP-dependent HSL prote 97.0 0.0033 1.1E-07 63.0 10.7 35 207-249 50-84 (310)
210 3u61_B DNA polymerase accessor 96.9 0.0016 5.6E-08 66.4 8.3 48 194-250 36-83 (324)
211 1ypw_A Transitional endoplasmi 96.9 0.00015 5.2E-09 84.0 0.5 78 201-301 505-583 (806)
212 1ypw_A Transitional endoplasmi 96.9 0.00044 1.5E-08 80.1 4.3 113 203-340 234-350 (806)
213 2r62_A Cell division protease 96.9 0.00018 6.2E-09 71.4 0.9 77 201-301 40-116 (268)
214 2gza_A Type IV secretion syste 96.9 0.00047 1.6E-08 72.3 4.0 114 204-341 172-288 (361)
215 3co5_A Putative two-component 96.8 0.00078 2.7E-08 60.7 4.3 90 207-340 27-116 (143)
216 4eun_A Thermoresistant glucoki 96.8 0.0009 3.1E-08 63.6 5.0 27 205-231 27-53 (200)
217 3c8u_A Fructokinase; YP_612366 96.8 0.0012 4.1E-08 63.2 5.8 41 204-249 19-59 (208)
218 3llm_A ATP-dependent RNA helic 96.8 0.004 1.4E-07 60.7 9.6 55 205-259 74-129 (235)
219 3e1s_A Exodeoxyribonuclease V, 96.8 0.0029 1E-07 70.4 9.6 103 207-340 204-316 (574)
220 2bjv_A PSP operon transcriptio 96.8 0.0043 1.5E-07 61.3 9.8 40 207-251 29-68 (265)
221 3uie_A Adenylyl-sulfate kinase 96.8 0.0011 3.8E-08 63.0 5.2 40 205-249 23-62 (200)
222 2qag_B Septin-6, protein NEDD5 96.8 0.0035 1.2E-07 67.1 9.5 50 279-338 168-217 (427)
223 1qvr_A CLPB protein; coiled co 96.8 0.0021 7E-08 74.9 8.4 112 209-338 193-307 (854)
224 2pez_A Bifunctional 3'-phospho 96.7 0.0013 4.5E-08 61.1 5.1 39 205-248 3-41 (179)
225 3pfi_A Holliday junction ATP-d 96.7 0.0057 1.9E-07 62.6 10.4 62 208-300 56-118 (338)
226 3tr0_A Guanylate kinase, GMP k 96.7 0.00095 3.2E-08 63.1 4.1 27 205-231 5-31 (205)
227 2ius_A DNA translocase FTSK; n 96.7 0.0054 1.8E-07 67.2 10.4 47 288-341 296-343 (512)
228 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0051 1.7E-07 62.3 9.6 63 207-300 38-102 (324)
229 1sxj_D Activator 1 41 kDa subu 96.7 0.014 4.7E-07 59.7 12.8 53 194-250 47-99 (353)
230 2gef_A Protease VP4; birnaviru 96.6 0.004 1.4E-07 58.2 7.3 61 483-550 128-188 (217)
231 1sxj_C Activator 1 40 kDa subu 96.6 0.0048 1.6E-07 63.5 8.7 24 210-233 49-72 (340)
232 1kgd_A CASK, peripheral plasma 96.6 0.0014 4.6E-08 61.4 4.1 30 203-232 1-30 (180)
233 1rz3_A Hypothetical protein rb 96.6 0.0034 1.2E-07 59.7 6.9 41 204-249 19-59 (201)
234 3ice_A Transcription terminati 96.5 0.0063 2.2E-07 64.3 9.2 69 186-262 158-226 (422)
235 1z6g_A Guanylate kinase; struc 96.5 0.0011 3.7E-08 64.3 3.2 28 204-231 20-47 (218)
236 2yvu_A Probable adenylyl-sulfa 96.5 0.0023 7.9E-08 59.8 5.2 40 205-249 11-50 (186)
237 1ojl_A Transcriptional regulat 96.5 0.0085 2.9E-07 61.1 9.6 44 206-254 24-67 (304)
238 3szr_A Interferon-induced GTP- 96.5 0.00039 1.3E-08 78.0 -0.6 24 210-233 48-71 (608)
239 3pvs_A Replication-associated 96.4 0.0067 2.3E-07 65.4 9.1 37 194-232 39-75 (447)
240 4dzz_A Plasmid partitioning pr 96.4 0.0052 1.8E-07 57.8 7.3 81 209-299 3-86 (206)
241 2obl_A ESCN; ATPase, hydrolase 96.4 0.0028 9.7E-08 66.1 5.9 55 185-250 54-108 (347)
242 1sq5_A Pantothenate kinase; P- 96.4 0.0033 1.1E-07 64.2 6.1 40 205-249 78-119 (308)
243 2v9p_A Replication protein E1; 96.4 0.0019 6.6E-08 66.2 4.3 29 203-231 122-150 (305)
244 1lvg_A Guanylate kinase, GMP k 96.4 0.0016 5.6E-08 62.0 3.4 28 205-232 2-29 (198)
245 2c9o_A RUVB-like 1; hexameric 96.3 0.0037 1.3E-07 67.4 6.4 81 200-302 56-140 (456)
246 2j41_A Guanylate kinase; GMP, 96.3 0.0022 7.4E-08 60.6 3.9 28 204-231 3-30 (207)
247 3upu_A ATP-dependent DNA helic 96.3 0.012 4.2E-07 63.3 10.4 37 209-250 47-84 (459)
248 2www_A Methylmalonic aciduria 96.3 0.0082 2.8E-07 62.5 8.7 88 205-298 72-176 (349)
249 2jeo_A Uridine-cytidine kinase 96.3 0.0025 8.7E-08 62.6 4.5 28 204-231 22-49 (245)
250 1jr3_A DNA polymerase III subu 96.3 0.023 7.8E-07 58.5 11.9 26 208-233 39-64 (373)
251 3asz_A Uridine kinase; cytidin 96.3 0.0025 8.5E-08 60.7 4.2 28 205-232 4-31 (211)
252 2chq_A Replication factor C sm 96.2 0.004 1.4E-07 62.6 5.5 23 210-232 41-63 (319)
253 2qm8_A GTPase/ATPase; G protei 96.2 0.0044 1.5E-07 64.3 5.9 41 204-249 52-92 (337)
254 1qvr_A CLPB protein; coiled co 96.2 0.0073 2.5E-07 70.3 8.4 83 208-300 589-672 (854)
255 1z6t_A APAF-1, apoptotic prote 96.2 0.015 5.2E-07 64.2 10.5 99 195-298 135-246 (591)
256 2a5y_B CED-4; apoptosis; HET: 96.2 0.02 6.9E-07 63.0 11.5 110 206-340 151-275 (549)
257 1f2t_B RAD50 ABC-ATPase; DNA d 96.2 0.007 2.4E-07 55.3 6.3 58 287-363 80-137 (148)
258 3pxi_A Negative regulator of g 96.2 0.0048 1.6E-07 70.8 6.4 69 209-300 523-591 (758)
259 1w36_D RECD, exodeoxyribonucle 96.2 0.015 5.2E-07 65.0 10.4 51 207-258 164-215 (608)
260 3p32_A Probable GTPase RV1496/ 96.2 0.0081 2.8E-07 62.6 7.5 40 207-251 79-118 (355)
261 2rhm_A Putative kinase; P-loop 96.2 0.0038 1.3E-07 58.2 4.5 29 203-231 1-29 (193)
262 2dpy_A FLII, flagellum-specifi 96.1 0.0064 2.2E-07 65.4 6.8 54 185-249 140-193 (438)
263 1xjc_A MOBB protein homolog; s 96.1 0.015 5.1E-07 54.3 8.5 37 208-249 5-41 (169)
264 3lnc_A Guanylate kinase, GMP k 96.1 0.0018 6.2E-08 62.9 2.2 28 204-231 24-52 (231)
265 1knq_A Gluconate kinase; ALFA/ 96.1 0.004 1.4E-07 57.4 4.4 27 205-231 6-32 (175)
266 2oap_1 GSPE-2, type II secreti 96.1 0.0014 4.9E-08 71.9 1.5 86 204-298 257-343 (511)
267 1iqp_A RFCS; clamp loader, ext 96.1 0.011 3.7E-07 59.6 8.0 36 195-232 36-71 (327)
268 2oze_A ORF delta'; para, walke 96.1 0.0093 3.2E-07 60.0 7.4 50 194-251 24-76 (298)
269 1m7g_A Adenylylsulfate kinase; 96.1 0.0053 1.8E-07 58.7 5.2 41 204-248 22-62 (211)
270 1g3q_A MIND ATPase, cell divis 96.0 0.013 4.6E-07 56.4 7.9 36 210-250 6-41 (237)
271 2p5t_B PEZT; postsegregational 96.0 0.0049 1.7E-07 60.9 4.8 39 204-250 29-67 (253)
272 1np6_A Molybdopterin-guanine d 96.0 0.019 6.5E-07 53.8 8.4 87 207-298 6-110 (174)
273 3a00_A Guanylate kinase, GMP k 96.0 0.0031 1.1E-07 59.2 2.9 26 207-232 1-26 (186)
274 3tau_A Guanylate kinase, GMP k 96.0 0.0042 1.4E-07 59.4 3.9 28 205-232 6-33 (208)
275 3vaa_A Shikimate kinase, SK; s 96.0 0.0046 1.6E-07 58.6 4.2 28 204-231 22-49 (199)
276 2bdt_A BH3686; alpha-beta prot 96.0 0.0039 1.3E-07 58.3 3.5 23 207-229 2-24 (189)
277 1p9r_A General secretion pathw 95.9 0.0066 2.2E-07 64.9 5.7 89 195-298 158-246 (418)
278 1hyq_A MIND, cell division inh 95.9 0.012 4.3E-07 57.7 7.3 37 209-250 5-41 (263)
279 3fkq_A NTRC-like two-domain pr 95.9 0.035 1.2E-06 58.1 10.8 40 205-249 141-181 (373)
280 3q9l_A Septum site-determining 95.9 0.011 3.9E-07 57.7 6.6 38 208-250 3-41 (260)
281 3hws_A ATP-dependent CLP prote 95.9 0.007 2.4E-07 62.9 5.3 26 206-231 50-75 (363)
282 3vkw_A Replicase large subunit 95.8 0.024 8.1E-07 60.9 9.4 85 203-300 157-246 (446)
283 1kag_A SKI, shikimate kinase I 95.8 0.0043 1.5E-07 56.9 3.1 25 207-231 4-28 (173)
284 3sr0_A Adenylate kinase; phosp 95.8 0.012 4.1E-07 56.6 6.3 32 209-250 2-33 (206)
285 1r6b_X CLPA protein; AAA+, N-t 95.8 0.011 3.8E-07 67.7 6.9 116 206-338 206-323 (758)
286 1um8_A ATP-dependent CLP prote 95.7 0.0089 3E-07 62.4 5.6 36 206-249 71-106 (376)
287 1sky_E F1-ATPase, F1-ATP synth 95.7 0.022 7.6E-07 61.5 8.6 62 185-255 134-195 (473)
288 3r20_A Cytidylate kinase; stru 95.7 0.045 1.5E-06 53.8 10.1 49 207-265 9-57 (233)
289 1a5t_A Delta prime, HOLB; zinc 95.7 0.081 2.8E-06 54.3 12.5 27 207-233 24-50 (334)
290 1gvn_B Zeta; postsegregational 95.7 0.0087 3E-07 60.5 5.0 48 194-249 18-67 (287)
291 2gno_A DNA polymerase III, gam 95.6 0.083 2.8E-06 53.8 12.2 103 195-337 8-119 (305)
292 1tue_A Replication protein E1; 95.6 0.0066 2.3E-07 58.7 3.6 37 194-231 46-82 (212)
293 2axn_A 6-phosphofructo-2-kinas 95.6 0.016 5.6E-07 63.6 7.2 39 207-250 35-73 (520)
294 2iut_A DNA translocase FTSK; n 95.5 0.058 2E-06 59.6 11.3 64 290-362 345-408 (574)
295 2ck3_D ATP synthase subunit be 95.5 0.051 1.7E-06 58.7 10.5 65 184-257 135-199 (482)
296 2qt1_A Nicotinamide riboside k 95.5 0.0082 2.8E-07 57.0 3.9 37 204-249 18-54 (207)
297 2wsm_A Hydrogenase expression/ 95.5 0.024 8.2E-07 53.9 7.2 37 208-250 31-67 (221)
298 2qor_A Guanylate kinase; phosp 95.5 0.0067 2.3E-07 57.6 3.2 28 204-231 9-36 (204)
299 1kht_A Adenylate kinase; phosp 95.4 0.013 4.4E-07 54.3 4.8 27 207-233 3-29 (192)
300 1nks_A Adenylate kinase; therm 95.4 0.015 5.3E-07 53.7 5.3 34 209-247 3-36 (194)
301 3cm0_A Adenylate kinase; ATP-b 95.4 0.0097 3.3E-07 55.1 3.9 27 205-231 2-28 (186)
302 1svm_A Large T antigen; AAA+ f 95.4 0.01 3.6E-07 62.5 4.5 29 203-231 165-193 (377)
303 3kta_A Chromosome segregation 95.3 0.01 3.5E-07 54.9 3.9 27 205-232 25-51 (182)
304 1qhx_A CPT, protein (chloramph 95.3 0.0098 3.3E-07 54.7 3.7 26 207-232 3-28 (178)
305 1fx0_B ATP synthase beta chain 95.3 0.1 3.5E-06 56.6 12.1 61 184-253 147-207 (498)
306 2bbw_A Adenylate kinase 4, AK4 95.3 0.011 3.7E-07 57.9 4.2 26 206-231 26-51 (246)
307 2gxq_A Heat resistant RNA depe 95.3 0.085 2.9E-06 49.3 10.1 63 195-262 31-95 (207)
308 3sfz_A APAF-1, apoptotic pepti 95.3 0.045 1.5E-06 65.2 10.1 55 195-250 135-189 (1249)
309 3l0o_A Transcription terminati 95.2 0.025 8.5E-07 59.7 6.7 65 186-258 159-223 (427)
310 3ney_A 55 kDa erythrocyte memb 95.2 0.012 4.3E-07 56.3 4.0 28 205-232 17-44 (197)
311 3kb2_A SPBC2 prophage-derived 95.2 0.012 4.2E-07 53.4 3.9 23 209-231 3-25 (173)
312 2va8_A SSO2462, SKI2-type heli 95.2 0.11 3.7E-06 58.9 12.5 57 200-260 39-96 (715)
313 3k9g_A PF-32 protein; ssgcid, 95.2 0.043 1.5E-06 54.1 8.0 39 207-251 27-66 (267)
314 3cr8_A Sulfate adenylyltranfer 95.2 0.013 4.3E-07 65.0 4.5 43 204-250 366-408 (552)
315 1r6b_X CLPA protein; AAA+, N-t 95.1 0.021 7.2E-07 65.3 6.5 81 208-300 489-569 (758)
316 2hf9_A Probable hydrogenase ni 95.1 0.043 1.5E-06 52.3 7.7 26 208-233 39-64 (226)
317 3of5_A Dethiobiotin synthetase 95.1 0.11 3.7E-06 50.6 10.6 114 210-340 7-150 (228)
318 2qe7_A ATP synthase subunit al 95.1 0.069 2.4E-06 58.0 9.9 64 184-257 144-207 (502)
319 3tqc_A Pantothenate kinase; bi 95.1 0.022 7.5E-07 58.7 5.7 40 208-250 93-132 (321)
320 2fz4_A DNA repair protein RAD2 95.0 0.032 1.1E-06 54.5 6.6 90 195-300 101-204 (237)
321 3pxg_A Negative regulator of g 95.0 0.023 8E-07 61.4 6.1 71 208-295 202-274 (468)
322 2xau_A PRE-mRNA-splicing facto 95.0 0.042 1.4E-06 63.2 8.4 60 194-259 100-160 (773)
323 2p67_A LAO/AO transport system 95.0 0.024 8.2E-07 58.7 5.7 41 205-250 54-94 (341)
324 3b6e_A Interferon-induced heli 95.0 0.039 1.3E-06 51.9 6.8 61 195-260 41-104 (216)
325 1yrb_A ATP(GTP)binding protein 95.0 0.031 1.1E-06 54.7 6.3 39 206-250 13-51 (262)
326 4e22_A Cytidylate kinase; P-lo 95.0 0.015 5.1E-07 57.4 4.0 27 205-231 25-51 (252)
327 3qxc_A Dethiobiotin synthetase 95.0 0.095 3.3E-06 51.7 9.8 116 208-340 22-171 (242)
328 2wwf_A Thymidilate kinase, put 94.9 0.02 7E-07 54.0 4.7 30 204-233 7-36 (212)
329 2plr_A DTMP kinase, probable t 94.9 0.018 6.3E-07 54.1 4.3 28 206-233 3-30 (213)
330 3end_A Light-independent proto 94.8 0.028 9.5E-07 56.8 5.7 41 205-250 39-79 (307)
331 1ly1_A Polynucleotide kinase; 94.8 0.016 5.5E-07 53.0 3.6 22 208-229 3-24 (181)
332 1t6n_A Probable ATP-dependent 94.8 0.099 3.4E-06 49.6 9.3 61 195-262 44-105 (220)
333 2zj8_A DNA helicase, putative 94.8 0.12 4E-06 58.7 11.4 54 203-261 35-90 (720)
334 3t61_A Gluconokinase; PSI-biol 94.8 0.017 5.7E-07 54.6 3.7 25 207-231 18-42 (202)
335 3bor_A Human initiation factor 94.8 0.088 3E-06 50.9 8.9 61 195-262 60-121 (237)
336 1tev_A UMP-CMP kinase; ploop, 94.7 0.021 7.2E-07 52.8 4.2 25 207-231 3-27 (196)
337 2p6r_A Afuhel308 helicase; pro 94.7 0.085 2.9E-06 59.7 10.0 120 207-339 40-181 (702)
338 1cke_A CK, MSSA, protein (cyti 94.7 0.021 7.2E-07 54.6 4.3 25 207-231 5-29 (227)
339 2jlq_A Serine protease subunit 94.7 0.087 3E-06 56.4 9.6 89 207-300 19-122 (451)
340 1y63_A LMAJ004144AAA protein; 94.7 0.022 7.7E-07 53.1 4.3 26 205-230 8-33 (184)
341 3iij_A Coilin-interacting nucl 94.7 0.02 6.7E-07 52.9 3.8 27 205-231 9-35 (180)
342 2c61_A A-type ATP synthase non 94.7 0.079 2.7E-06 57.1 9.0 174 184-364 134-340 (469)
343 3qkt_A DNA double-strand break 94.7 0.052 1.8E-06 56.0 7.3 59 286-363 270-328 (339)
344 3trf_A Shikimate kinase, SK; a 94.6 0.022 7.7E-07 52.6 4.1 25 207-231 5-29 (185)
345 2c95_A Adenylate kinase 1; tra 94.6 0.021 7.1E-07 53.2 3.8 27 205-231 7-33 (196)
346 3zvl_A Bifunctional polynucleo 94.6 0.043 1.5E-06 58.4 6.7 26 205-230 256-281 (416)
347 2vp4_A Deoxynucleoside kinase; 94.6 0.013 4.6E-07 56.8 2.5 27 204-230 17-43 (230)
348 2ze6_A Isopentenyl transferase 94.6 0.022 7.6E-07 56.3 4.1 24 208-231 2-25 (253)
349 2xj4_A MIPZ; replication, cell 94.6 0.066 2.3E-06 53.6 7.7 37 209-250 6-43 (286)
350 3sop_A Neuronal-specific septi 94.5 0.02 6.8E-07 57.4 3.7 26 209-234 4-29 (270)
351 1nn5_A Similar to deoxythymidy 94.5 0.038 1.3E-06 52.1 5.5 29 205-233 7-35 (215)
352 3lw7_A Adenylate kinase relate 94.5 0.019 6.7E-07 51.8 3.2 19 209-227 3-21 (179)
353 4a8j_A Elongator complex prote 94.5 0.012 4.3E-07 61.2 2.1 72 289-363 218-291 (361)
354 1in4_A RUVB, holliday junction 94.4 0.021 7.2E-07 58.7 3.6 25 208-232 52-76 (334)
355 2v6i_A RNA helicase; membrane, 94.4 0.12 4E-06 55.1 9.5 117 206-338 1-132 (431)
356 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.04 1.4E-06 60.2 5.7 28 205-232 39-66 (500)
357 3igf_A ALL4481 protein; two-do 94.3 0.064 2.2E-06 56.4 7.1 36 208-248 3-38 (374)
358 2bwj_A Adenylate kinase 5; pho 94.3 0.021 7.3E-07 53.2 3.0 27 205-231 10-36 (199)
359 2pbr_A DTMP kinase, thymidylat 94.3 0.048 1.6E-06 50.4 5.5 34 209-247 2-35 (195)
360 1odf_A YGR205W, hypothetical 3 94.3 0.031 1.1E-06 56.6 4.4 31 203-233 27-57 (290)
361 3euj_A Chromosome partition pr 94.3 0.028 9.6E-07 61.0 4.3 31 204-235 27-57 (483)
362 2r9v_A ATP synthase subunit al 94.2 0.2 6.7E-06 54.5 10.8 65 184-258 157-221 (515)
363 3pey_A ATP-dependent RNA helic 94.2 0.12 4.2E-06 52.9 9.0 100 194-301 34-158 (395)
364 4eaq_A DTMP kinase, thymidylat 94.2 0.035 1.2E-06 54.1 4.5 30 204-233 23-52 (229)
365 2z0h_A DTMP kinase, thymidylat 94.2 0.046 1.6E-06 50.8 5.2 33 209-246 2-34 (197)
366 2vli_A Antibiotic resistance p 94.2 0.018 6.3E-07 53.0 2.3 26 206-231 4-29 (183)
367 2jaq_A Deoxyguanosine kinase; 94.2 0.031 1.1E-06 52.2 3.9 24 209-232 2-25 (205)
368 3nwj_A ATSK2; P loop, shikimat 94.1 0.022 7.6E-07 56.5 3.0 26 207-232 48-73 (250)
369 1cp2_A CP2, nitrogenase iron p 94.1 0.047 1.6E-06 53.7 5.3 37 209-250 3-39 (269)
370 1via_A Shikimate kinase; struc 94.1 0.03 1E-06 51.5 3.7 23 209-231 6-28 (175)
371 3umf_A Adenylate kinase; rossm 94.1 0.038 1.3E-06 53.6 4.5 28 204-231 26-53 (217)
372 1aky_A Adenylate kinase; ATP:A 94.1 0.034 1.2E-06 53.2 4.2 26 206-231 3-28 (220)
373 1wp9_A ATP-dependent RNA helic 94.1 0.24 8.2E-06 51.8 11.1 97 195-301 17-138 (494)
374 1zd8_A GTP:AMP phosphotransfer 94.1 0.027 9.3E-07 54.2 3.4 28 204-231 4-31 (227)
375 2cdn_A Adenylate kinase; phosp 94.1 0.037 1.3E-06 52.1 4.3 26 206-231 19-44 (201)
376 2v54_A DTMP kinase, thymidylat 94.1 0.028 9.5E-07 52.7 3.4 26 206-231 3-28 (204)
377 1hv8_A Putative ATP-dependent 94.0 0.21 7.2E-06 50.5 10.2 61 195-262 36-97 (367)
378 4b3f_X DNA-binding protein smu 94.0 0.058 2E-06 60.6 6.5 53 206-263 204-257 (646)
379 3dkp_A Probable ATP-dependent 94.0 0.21 7.1E-06 48.3 9.7 61 195-262 59-121 (245)
380 1zuh_A Shikimate kinase; alpha 94.0 0.036 1.2E-06 50.5 4.0 25 208-232 8-32 (168)
381 2z83_A Helicase/nucleoside tri 93.9 0.12 4E-06 55.6 8.5 52 205-261 19-72 (459)
382 2ck3_A ATP synthase subunit al 93.9 0.19 6.3E-06 54.7 9.9 69 184-257 144-215 (510)
383 1pui_A ENGB, probable GTP-bind 93.9 0.017 5.7E-07 54.4 1.5 28 204-231 23-50 (210)
384 3zq6_A Putative arsenical pump 93.9 0.064 2.2E-06 55.0 6.0 38 208-250 15-52 (324)
385 3kjh_A CO dehydrogenase/acetyl 93.9 0.036 1.2E-06 53.4 4.0 37 210-251 3-39 (254)
386 2if2_A Dephospho-COA kinase; a 93.9 0.032 1.1E-06 52.6 3.4 21 209-229 3-23 (204)
387 2iyv_A Shikimate kinase, SK; t 93.9 0.031 1.1E-06 51.7 3.3 24 208-231 3-26 (184)
388 1jjv_A Dephospho-COA kinase; P 93.8 0.033 1.1E-06 52.6 3.4 21 209-229 4-24 (206)
389 3fgn_A Dethiobiotin synthetase 93.8 0.39 1.3E-05 47.5 11.4 114 209-340 29-167 (251)
390 1yks_A Genome polyprotein [con 93.8 0.041 1.4E-06 58.9 4.5 92 204-300 5-111 (440)
391 3be4_A Adenylate kinase; malar 93.8 0.041 1.4E-06 52.7 4.1 27 205-231 3-29 (217)
392 6rxn_A Rubredoxin; electron tr 93.8 0.02 7E-07 41.6 1.4 26 114-139 3-40 (46)
393 1qde_A EIF4A, translation init 93.8 0.27 9.3E-06 46.6 9.9 60 195-262 44-105 (224)
394 3vr4_A V-type sodium ATPase ca 93.8 0.37 1.3E-05 53.1 12.0 66 184-261 214-279 (600)
395 1gtv_A TMK, thymidylate kinase 93.7 0.023 7.8E-07 53.7 2.1 25 209-233 2-26 (214)
396 2oxc_A Probable ATP-dependent 93.7 0.2 6.8E-06 48.1 8.9 54 207-263 61-116 (230)
397 2rcn_A Probable GTPase ENGC; Y 93.7 0.038 1.3E-06 57.8 3.9 28 205-232 213-240 (358)
398 3fwy_A Light-independent proto 93.7 0.067 2.3E-06 54.8 5.7 40 206-250 47-86 (314)
399 2afh_E Nitrogenase iron protei 93.7 0.06 2.1E-06 53.8 5.3 38 208-250 3-40 (289)
400 1qf9_A UMP/CMP kinase, protein 93.7 0.045 1.5E-06 50.5 4.0 25 207-231 6-30 (194)
401 3oaa_A ATP synthase subunit al 93.7 0.15 5.2E-06 55.3 8.6 65 184-258 144-208 (513)
402 3fht_A ATP-dependent RNA helic 93.7 0.2 7E-06 51.7 9.5 103 194-301 54-181 (412)
403 2pl3_A Probable ATP-dependent 93.7 0.37 1.3E-05 46.1 10.7 64 195-263 55-121 (236)
404 2f1r_A Molybdopterin-guanine d 93.6 0.037 1.3E-06 51.6 3.3 27 208-234 3-29 (171)
405 1xti_A Probable ATP-dependent 93.6 0.27 9.1E-06 50.5 10.2 61 195-262 38-99 (391)
406 1e6c_A Shikimate kinase; phosp 93.6 0.039 1.3E-06 50.2 3.4 23 209-231 4-26 (173)
407 4ag6_A VIRB4 ATPase, type IV s 93.5 0.085 2.9E-06 55.3 6.3 48 206-258 34-81 (392)
408 3fb4_A Adenylate kinase; psych 93.5 0.048 1.6E-06 51.8 4.0 23 209-231 2-24 (216)
409 3ber_A Probable ATP-dependent 93.4 0.28 9.6E-06 47.9 9.5 61 195-262 73-134 (249)
410 3oiy_A Reverse gyrase helicase 93.4 0.093 3.2E-06 54.9 6.3 58 195-262 29-87 (414)
411 2yv5_A YJEQ protein; hydrolase 93.4 0.042 1.4E-06 55.9 3.5 34 194-233 157-190 (302)
412 1bif_A 6-phosphofructo-2-kinas 93.4 0.11 3.9E-06 55.9 7.1 27 207-233 39-65 (469)
413 3ld9_A DTMP kinase, thymidylat 93.4 0.081 2.8E-06 51.5 5.4 40 205-249 19-59 (223)
414 3iuy_A Probable ATP-dependent 93.4 0.53 1.8E-05 44.8 11.2 63 195-262 50-117 (228)
415 3bfv_A CAPA1, CAPB2, membrane 93.3 0.096 3.3E-06 52.3 6.1 41 206-251 81-122 (271)
416 1zak_A Adenylate kinase; ATP:A 93.3 0.046 1.6E-06 52.3 3.6 26 206-231 4-29 (222)
417 1vec_A ATP-dependent RNA helic 93.3 0.56 1.9E-05 43.6 11.1 61 195-262 33-94 (206)
418 3fho_A ATP-dependent RNA helic 93.3 0.21 7.3E-06 54.2 9.1 100 194-301 148-272 (508)
419 2pt5_A Shikimate kinase, SK; a 93.2 0.058 2E-06 48.8 3.9 23 209-231 2-24 (168)
420 2qmh_A HPR kinase/phosphorylas 93.2 0.045 1.5E-06 52.6 3.2 25 206-230 33-57 (205)
421 3tlx_A Adenylate kinase 2; str 93.2 0.053 1.8E-06 53.1 3.9 27 205-231 27-53 (243)
422 1ukz_A Uridylate kinase; trans 93.2 0.057 2E-06 50.7 3.9 24 207-230 15-38 (203)
423 3pxi_A Negative regulator of g 93.2 0.11 3.6E-06 59.6 6.9 72 207-295 201-274 (758)
424 1oix_A RAS-related protein RAB 93.2 0.045 1.5E-06 51.0 3.2 24 209-232 31-54 (191)
425 3lv8_A DTMP kinase, thymidylat 93.2 0.086 3E-06 51.8 5.3 32 203-234 23-54 (236)
426 1q3t_A Cytidylate kinase; nucl 93.2 0.063 2.1E-06 52.1 4.3 27 205-231 14-40 (236)
427 2f9l_A RAB11B, member RAS onco 93.2 0.049 1.7E-06 50.9 3.4 23 209-231 7-29 (199)
428 3cio_A ETK, tyrosine-protein k 93.1 0.098 3.3E-06 53.0 5.8 41 206-251 103-144 (299)
429 3eiq_A Eukaryotic initiation f 93.1 0.19 6.4E-06 52.1 8.2 61 195-262 70-131 (414)
430 2gmg_A Hypothetical protein PF 93.1 0.031 1.1E-06 47.6 1.7 27 114-140 66-95 (105)
431 4edh_A DTMP kinase, thymidylat 93.1 0.11 3.6E-06 50.2 5.8 37 205-246 4-40 (213)
432 1a7j_A Phosphoribulokinase; tr 93.1 0.049 1.7E-06 55.1 3.4 39 207-250 5-43 (290)
433 3dl0_A Adenylate kinase; phosp 93.1 0.053 1.8E-06 51.5 3.5 23 209-231 2-24 (216)
434 1ihu_A Arsenical pump-driving 93.1 0.08 2.7E-06 58.8 5.4 53 194-251 313-366 (589)
435 2whx_A Serine protease/ntpase/ 93.0 0.27 9.3E-06 55.0 9.7 51 205-260 184-236 (618)
436 1ihu_A Arsenical pump-driving 93.0 0.096 3.3E-06 58.1 6.0 39 207-250 8-46 (589)
437 1fx0_A ATP synthase alpha chai 93.0 0.15 5.2E-06 55.4 7.3 67 184-260 145-211 (507)
438 2gj8_A MNME, tRNA modification 93.0 0.059 2E-06 49.3 3.5 25 206-230 3-27 (172)
439 1u0j_A DNA replication protein 93.0 0.088 3E-06 52.7 5.0 37 195-231 92-128 (267)
440 1f2t_A RAD50 ABC-ATPase; DNA d 93.0 0.076 2.6E-06 48.0 4.2 24 208-231 24-47 (149)
441 2wv9_A Flavivirin protease NS2 93.0 0.21 7.3E-06 56.4 8.8 90 206-300 240-344 (673)
442 1s2m_A Putative ATP-dependent 92.9 0.3 1E-05 50.4 9.3 61 195-262 51-112 (400)
443 3ug7_A Arsenical pump-driving 92.9 0.1 3.4E-06 54.2 5.6 41 205-250 24-64 (349)
444 1t9h_A YLOQ, probable GTPase E 92.9 0.017 5.7E-07 59.2 -0.4 30 204-233 170-199 (307)
445 1u0l_A Probable GTPase ENGC; p 92.9 0.043 1.5E-06 55.7 2.7 29 205-233 167-195 (301)
446 1vt4_I APAF-1 related killer D 92.8 0.35 1.2E-05 57.2 10.4 40 207-250 150-191 (1221)
447 3fmo_B ATP-dependent RNA helic 92.8 0.29 9.9E-06 49.4 8.8 101 195-301 122-248 (300)
448 3ake_A Cytidylate kinase; CMP 92.8 0.072 2.5E-06 49.9 4.0 23 209-231 4-26 (208)
449 2woj_A ATPase GET3; tail-ancho 92.8 0.13 4.6E-06 53.4 6.4 51 194-251 7-59 (354)
450 2fwr_A DNA repair protein RAD2 92.7 0.21 7.2E-06 53.3 8.0 92 194-301 100-205 (472)
451 2ph1_A Nucleotide-binding prot 92.7 0.11 3.8E-06 51.2 5.3 39 209-252 21-59 (262)
452 3i5x_A ATP-dependent RNA helic 92.6 0.93 3.2E-05 49.4 13.2 64 195-261 102-168 (563)
453 1uf9_A TT1252 protein; P-loop, 92.6 0.077 2.6E-06 49.5 3.9 24 207-230 8-31 (203)
454 3sqw_A ATP-dependent RNA helic 92.6 0.71 2.4E-05 50.7 12.3 65 194-261 50-117 (579)
455 1ak2_A Adenylate kinase isoenz 92.6 0.084 2.9E-06 51.0 4.3 25 207-231 16-40 (233)
456 1vht_A Dephospho-COA kinase; s 92.6 0.081 2.8E-06 50.4 4.1 23 207-229 4-26 (218)
457 2xb4_A Adenylate kinase; ATP-b 92.5 0.079 2.7E-06 51.0 3.9 23 209-231 2-24 (223)
458 1wcv_1 SOJ, segregation protei 92.5 0.093 3.2E-06 51.5 4.4 40 207-251 6-46 (257)
459 2kdx_A HYPA, hydrogenase/ureas 92.5 0.044 1.5E-06 48.0 1.8 28 113-140 71-101 (119)
460 2woo_A ATPase GET3; tail-ancho 92.5 0.13 4.4E-06 52.9 5.6 40 207-251 19-58 (329)
461 3io3_A DEHA2D07832P; chaperone 92.4 0.17 5.7E-06 52.6 6.5 49 195-250 8-58 (348)
462 3tqf_A HPR(Ser) kinase; transf 92.4 0.083 2.8E-06 49.6 3.7 24 206-229 15-38 (181)
463 3ea0_A ATPase, para family; al 92.4 0.15 5.2E-06 49.0 5.8 41 207-251 4-45 (245)
464 3iqw_A Tail-anchored protein t 92.4 0.14 4.6E-06 53.0 5.7 49 195-250 6-54 (334)
465 1uj2_A Uridine-cytidine kinase 92.3 0.078 2.7E-06 52.0 3.6 43 208-250 23-65 (252)
466 2dy1_A Elongation factor G; tr 92.3 0.13 4.6E-06 58.0 5.9 29 204-232 6-34 (665)
467 3mfy_A V-type ATP synthase alp 92.2 0.23 8E-06 54.5 7.5 66 184-261 209-274 (588)
468 2wji_A Ferrous iron transport 92.2 0.077 2.6E-06 47.9 3.2 22 209-230 5-26 (165)
469 3cwq_A Para family chromosome 92.1 0.15 5.1E-06 48.6 5.3 76 209-299 3-78 (209)
470 1w1w_A Structural maintenance 92.1 0.087 3E-06 56.0 4.0 30 204-233 23-52 (430)
471 1e4v_A Adenylate kinase; trans 92.1 0.085 2.9E-06 50.2 3.5 23 209-231 2-24 (214)
472 4tmk_A Protein (thymidylate ki 92.1 0.15 5.2E-06 49.1 5.3 29 206-234 2-30 (213)
473 2ygr_A Uvrabc system protein A 92.0 0.19 6.5E-06 58.9 6.8 55 289-362 542-596 (993)
474 4ddu_A Reverse gyrase; topoiso 92.0 0.51 1.7E-05 56.4 10.7 60 194-263 85-145 (1104)
475 2k2d_A Ring finger and CHY zin 92.0 0.035 1.2E-06 45.2 0.5 30 113-142 35-68 (79)
476 1ni3_A YCHF GTPase, YCHF GTP-b 92.0 0.096 3.3E-06 55.4 4.0 29 202-230 15-43 (392)
477 2gk6_A Regulator of nonsense t 91.9 0.18 6.1E-06 56.5 6.4 53 207-263 195-248 (624)
478 2o5v_A DNA replication and rep 91.9 0.1 3.5E-06 54.5 4.0 26 205-231 25-50 (359)
479 1vq8_Z 50S ribosomal protein L 91.8 0.041 1.4E-06 45.2 0.8 25 113-137 25-53 (83)
480 1ex7_A Guanylate kinase; subst 91.8 0.098 3.3E-06 49.5 3.5 23 209-231 3-25 (186)
481 2zej_A Dardarin, leucine-rich 91.8 0.075 2.6E-06 48.9 2.7 21 209-229 4-24 (184)
482 3a43_A HYPD, hydrogenase nicke 91.7 0.053 1.8E-06 48.9 1.5 28 113-140 68-118 (139)
483 2r6f_A Excinuclease ABC subuni 91.7 0.17 5.8E-06 59.2 6.0 56 288-362 524-579 (972)
484 3ly5_A ATP-dependent RNA helic 91.7 0.48 1.7E-05 46.5 8.6 63 195-262 84-149 (262)
485 3fe2_A Probable ATP-dependent 91.7 0.82 2.8E-05 44.0 10.1 62 195-261 59-124 (242)
486 2lcq_A Putative toxin VAPC6; P 91.6 0.063 2.2E-06 49.6 1.9 27 112-138 129-157 (165)
487 1q0u_A Bstdead; DEAD protein, 91.6 0.43 1.5E-05 45.2 7.9 61 195-262 34-95 (219)
488 1nij_A Hypothetical protein YJ 91.6 0.077 2.6E-06 54.2 2.8 24 208-231 5-28 (318)
489 2j0s_A ATP-dependent RNA helic 91.6 0.4 1.4E-05 49.7 8.3 62 195-263 67-129 (410)
490 2ga8_A Hypothetical 39.9 kDa p 91.6 0.1 3.6E-06 54.3 3.7 29 205-233 20-50 (359)
491 2kn9_A Rubredoxin; metalloprot 91.6 0.099 3.4E-06 42.6 2.8 29 113-141 25-72 (81)
492 1ltq_A Polynucleotide kinase; 91.5 0.1 3.6E-06 52.1 3.6 23 208-230 3-25 (301)
493 3a8t_A Adenylate isopentenyltr 91.4 0.12 4.1E-06 53.5 3.9 25 206-230 39-63 (339)
494 2dyk_A GTP-binding protein; GT 91.4 0.11 3.9E-06 45.8 3.4 22 209-230 3-24 (161)
495 2wjg_A FEOB, ferrous iron tran 91.4 0.11 3.6E-06 47.6 3.2 22 209-230 9-30 (188)
496 1rif_A DAR protein, DNA helica 91.4 0.14 5E-06 50.8 4.4 60 195-263 121-181 (282)
497 1z2a_A RAS-related protein RAB 91.4 0.12 4E-06 46.1 3.4 22 209-230 7-28 (168)
498 2z0m_A 337AA long hypothetical 91.3 1.1 3.9E-05 44.5 11.2 55 195-262 24-79 (337)
499 1kao_A RAP2A; GTP-binding prot 91.3 0.12 4E-06 45.8 3.4 22 209-230 5-26 (167)
500 2grj_A Dephospho-COA kinase; T 91.3 0.13 4.5E-06 48.7 3.8 24 207-230 12-35 (192)
No 1
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=100.00 E-value=3.6e-39 Score=358.91 Aligned_cols=194 Identities=16% Similarity=0.234 Sum_probs=173.6
Q ss_pred ceeecccCCeEEecCCCcccccccccccccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHH--
Q 007957 386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMI-- 460 (583)
Q Consensus 386 ~~f~It~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~-- 460 (583)
..+.|+...+..+.+++.++.+.... ...+|.+.+++|+|.++.+|+|||++++ |.|++++||++ ++|++++
T Consensus 325 ~~~~It~~~l~~~Lg~~~~~~e~~~~--~~~~g~v~g~a~~~~~g~~~~ve~~~~~-g~~~~~~~G~~~~~~~es~~~a~ 401 (543)
T 3m6a_A 325 KRITVTEKNLQDFIGKRIFRYGQAET--EDQVGVVTGLAYTTVGGDTLSIEVSLSP-GKGKLILTGKLGDVMRESAQAAF 401 (543)
T ss_dssp SCCEECTTTTHHHHCSCCSCCSTTTC--CCBSSEEEEEEEETTEEEEEEEEEEEES-SCSCEEEEESCCHHHHHHHHHHH
T ss_pred cceecCHHHHHHHhCCcccCchhhhc--cccccccccccccCCCccceeeEEEeeC-CCCceEEecCchHHHHHHHHHHH
Confidence 34567778888888888887754332 4578999999999999999999999999 78999999996 7888765
Q ss_pred --HHHHHHhcCCC---cccccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHH
Q 007957 461 --ISVLMKQAGLK---LQENAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534 (583)
Q Consensus 461 --v~~~~k~~g~~---~~~~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~ 534 (583)
++++.+++|++ |+++|||||++|| ++|+||++|||||+||+||+.++|++.+++|+|||+|+|+||||+|+.+|
T Consensus 402 ~~v~~~~~~~g~~~~~~~~~di~v~~~~g~~~k~gpsa~l~ia~ai~s~~~~~~~~~~~~~~GEi~L~G~v~~v~g~~~~ 481 (543)
T 3m6a_A 402 SYVRSKTEELGIEPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEK 481 (543)
T ss_dssp HHHTSSCGGGSSCSSCTTTCEEEEEECTTBCGGGGGGGHHHHHHHHHHHHTSCCBCTTCEECCEECTTCBEECCSCHHHH
T ss_pred HHHHHHHHHcCCCccccCCcceEEEeCCCCCCCCCchhHHHHHHHHHHHccCCCCCCCEEEEEEEcCCceEEeeCCHHHH
Confidence 88888999999 9999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEeCCChhhhh---hcCCCCcEEEEeCCHHHHHHHhhcC
Q 007957 535 VSTVAKLGYRKCIVPKSAEKSLA---TLGFEQMEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 535 i~~A~~~G~k~~ivP~~n~~e~~---~~~~~~i~v~~v~~l~e~~~~l~~~ 582 (583)
+.+|+++||+++|+|++|.+++. +...++++|++|+++.||+++++..
T Consensus 482 ~~~a~~~g~~~~iiP~~n~~~~~~~~~~~~~~~~i~~v~~l~e~~~~~~~~ 532 (543)
T 3m6a_A 482 ALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALVG 532 (543)
T ss_dssp HHHHHHTTCSBEEEEGGGGGGGGGSCHHHHTSCBCCEESBHHHHHHHHBC-
T ss_pred HHHHHHCCCCEEEECHHHHHHHHhhHHHHhCCCEEEEeCCHHHHHHHHHhc
Confidence 99999999999999999988742 3345689999999999999998754
No 2
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=100.00 E-value=8.3e-35 Score=280.60 Aligned_cols=165 Identities=21% Similarity=0.405 Sum_probs=152.1
Q ss_pred ccccceEEEEEEcCCc--eeEEEEEEEeecCC---CceEEEechh-HHHHHHHHHHHHHh-----------cCCCccccc
Q 007957 414 EFLAGLAVAVIMDGSR--SFLIEIQALCVSGS---TVSRHVNGIQ-ASRADMIISVLMKQ-----------AGLKLQENA 476 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~--~~lVEvqalv~~~~---~p~~~~~G~~-~~~~~~~v~~~~k~-----------~g~~~~~~d 476 (583)
++.+|.+++++|.|.+ +.++||||+++++. .|++.++| + ++|+.+++.+++++ +|++|+++|
T Consensus 3 ~~~~g~v~gla~~g~~~~g~~v~IEa~v~~~~~~g~g~~~~tG-~~~res~~~~~a~l~~~~~~~~~~~~~~g~~~~~~d 81 (187)
T 1xhk_A 3 EPKVGVIYGLAVLGAGGIGDVTKIIVQILESKNPGTHLLNISG-DIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKE 81 (187)
T ss_dssp CCBTTEEEEEECCSSSSCCEEEEEEEEEEECSSCEEEEESSCH-HHHHHHHHHHHHHHHHHHHTTSSCCCSSCCCSTTEE
T ss_pred CCceEEEEEEEEECCCCceEEEEEEEEEEcCCCCCCCceEEec-HHHHHHHHHHHHHHhhhhhcccccccccCCCCCCee
Confidence 3468999999999997 89999999999843 25667789 6 88899999888888 999999999
Q ss_pred EEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhh
Q 007957 477 IFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKS 555 (583)
Q Consensus 477 I~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e 555 (583)
||||++|| ++|+||++|||||+||+|++.++|++++++|+|||+|+|+||||+|+++|+.+|+++||+++|||++|.+|
T Consensus 82 i~vn~~~g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~V~pV~Gi~~ki~~A~~~G~~~viiP~~N~~e 161 (187)
T 1xhk_A 82 IYIQFSQSYSKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVIIPEANMID 161 (187)
T ss_dssp EEEEESSCCCTTTGGGGHHHHHHHHHHHHHTCCBCSSEEECCEECTTCBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGG
T ss_pred EEEEECCCCcCCcCchHHHHHHHHHHHHccCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEeccchhhh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcCCCCcEEEEeCCHHHHHHHhhc
Q 007957 556 LATLGFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 556 ~~~~~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
+ ...++++|++|+|+.|++++++.
T Consensus 162 ~--~~~~~i~v~~v~~l~ea~~~l~~ 185 (187)
T 1xhk_A 162 V--IETEGIEIIPVKTLDEIVPLVFD 185 (187)
T ss_dssp C--CCCCSSEEEEESBHHHHHHHHBC
T ss_pred h--cccCCcEEEEcCCHHHHHHHHhc
Confidence 3 35679999999999999999874
No 3
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=100.00 E-value=1.1e-34 Score=282.09 Aligned_cols=167 Identities=17% Similarity=0.310 Sum_probs=154.4
Q ss_pred ccccceEEEEEEcCCceeEEEEEEEeecCCCceEEEechh---HHHHHHHHHHHHH----hcCCC---cccccEEEEecC
Q 007957 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQ---ASRADMIISVLMK----QAGLK---LQENAIFLNVVS 483 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~~~lVEvqalv~~~~~p~~~~~G~~---~~~~~~~v~~~~k----~~g~~---~~~~dI~vnl~~ 483 (583)
...+|.+++++|.+..+.+|+||+.+.+ |.|.++++|++ ++|+++|++++.+ ++|++ |+++|||||++|
T Consensus 8 ~~~~G~v~gla~~~~~g~~v~IE~~~~~-G~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~g~~~~~~~~~di~vnl~~ 86 (200)
T 1rre_A 8 ENRVGQVTGLAWTEVGGDLLTIETACVP-GKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPE 86 (200)
T ss_dssp --CCEEEEEEEEETTEEEEEEEEEEEEE-CSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSS
T ss_pred CCCcEEEEEEEEecCCCEEEEEEEEEeC-CCceEEEecCchHHHHHHHHHHHHHHHHhHHhcCCCcccCCcceEEEEeCC
Confidence 3568999999999999999999999999 68999999996 9999999999999 89999 999999999999
Q ss_pred C-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhh---hc
Q 007957 484 G-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA---TL 559 (583)
Q Consensus 484 g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~---~~ 559 (583)
| .+|+||++|||||+||+|++.++|++++++|+|||+|+|+||||+|+++|+.+|+++||+++|+|++|.+|+. ..
T Consensus 87 g~~~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vivP~~N~~e~~~~~~~ 166 (200)
T 1rre_A 87 GATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDN 166 (200)
T ss_dssp TTSCEESSTTHHHHHHHHHHHHHTCCBCTTEEECCEECTTCBEECCSCHHHHHHHHHHTTCCEEEEEGGGGGGGGGSCHH
T ss_pred ccccCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEEcCCceEEeeCCHHHHHHHHHHcCCCEEEechHHHHHhhhhHHh
Confidence 9 6699999999999999999999999999999999999999999999999999999999999999999988752 12
Q ss_pred CCCCcEEEEeCCHHHHHHHhhc
Q 007957 560 GFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 560 ~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
..+++++++|+||.|++++++.
T Consensus 167 ~~~gi~v~~v~~l~ea~~~l~~ 188 (200)
T 1rre_A 167 VIADLDIHPVKRIEEVLTLALQ 188 (200)
T ss_dssp HHHHSEEEEESBHHHHHHHHBS
T ss_pred hcCCCEEEEcCCHHHHHHHHhh
Confidence 3458999999999999999874
No 4
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Probab=100.00 E-value=7.1e-34 Score=277.74 Aligned_cols=168 Identities=19% Similarity=0.325 Sum_probs=149.1
Q ss_pred cccceEEEEEEcCCc-eeEEEEEEEeecC-CC--ceEEEechh---HHHHHHHHHHHH-HhcCCCcccccEEEEecCC-c
Q 007957 415 FLAGLAVAVIMDGSR-SFLIEIQALCVSG-ST--VSRHVNGIQ---ASRADMIISVLM-KQAGLKLQENAIFLNVVSG-V 485 (583)
Q Consensus 415 ~~~G~~~s~~~~G~~-~~lVEvqalv~~~-~~--p~~~~~G~~---~~~~~~~v~~~~-k~~g~~~~~~dI~vnl~~g-~ 485 (583)
..+|.+.+++|.|.+ +.++.||+++.++ +. |+++++|++ ++|+.+++++++ +++|++|+++|||||++|| +
T Consensus 10 ~~vg~v~gla~~g~~~g~~l~Iev~v~~s~g~~~p~~~~~G~~~~~~~es~~~v~a~l~~~~g~~~~~~di~vnl~~g~~ 89 (207)
T 1z0w_A 10 YEVGRVNGLAVIGESAGIVLPIIAEVTPSMSKSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQFVGTYE 89 (207)
T ss_dssp EETTEEEEEEEETTTEEEEEEEEEEEEECC---CCCEECCSTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEESSCCT
T ss_pred CceEEEEEEEEECCCCcEEEEEEEEEEecCCCCCCeEEEeCCchhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEecccc
Confidence 468999999999996 9977777776663 34 899999975 777777777666 8999999999999999999 9
Q ss_pred ccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhh--hcCCCC
Q 007957 486 ALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA--TLGFEQ 563 (583)
Q Consensus 486 ~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~--~~~~~~ 563 (583)
+|+||++|||||+||+||+.++|++++++|+|||+|+|+||||+|+.+|+.+|+++||+++|+|++|.+|+. ....++
T Consensus 90 ~k~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~viiP~~N~~e~~~~~~~~~~ 169 (207)
T 1z0w_A 90 GVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGK 169 (207)
T ss_dssp TEECCTTBHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHTTCSEEEEEGGGGGGCCCCTTTTTS
T ss_pred cccCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeeCCHHHHHHHHHHcCCCEEEechhhhhhhccchhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987732 125579
Q ss_pred cEEEEeCCHHHHHHHhhcC
Q 007957 564 MEFIGCKNLKEVINVVFTT 582 (583)
Q Consensus 564 i~v~~v~~l~e~~~~l~~~ 582 (583)
+++++|+|+.|++++++.+
T Consensus 170 i~v~~v~~l~ea~~~l~~~ 188 (207)
T 1z0w_A 170 IEVIPVSRINEVLEHVLED 188 (207)
T ss_dssp SEEEEESBHHHHHHHHBCC
T ss_pred cEEEEcCCHHHHHHHHhhc
Confidence 9999999999999998753
No 5
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD, transit peptide; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=273.40 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=151.1
Q ss_pred ccccceEEEEEEcCCceeEEEEEEEee---------cCCCceEEEechh---HHHHHHHHHHHHHhcCC-------Cccc
Q 007957 414 EFLAGLAVAVIMDGSRSFLIEIQALCV---------SGSTVSRHVNGIQ---ASRADMIISVLMKQAGL-------KLQE 474 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~~~lVEvqalv~---------~~~~p~~~~~G~~---~~~~~~~v~~~~k~~g~-------~~~~ 474 (583)
+..+|.+.+++|.+..+.+++||+.+. + |.+.++++|++ ++|+++|++++.+++++ .|++
T Consensus 7 ~~~~G~v~GLa~t~~gg~~l~iE~~~~~~~~~~~~~~-g~g~~~itG~~~~~~kES~~~a~s~~~~~~~~~~~~~~~~~~ 85 (207)
T 2x36_A 7 VTPPGVVMGLAWTAMGGSTLFVETSLRRPQDKDAKGD-KDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAPANDYLVT 85 (207)
T ss_dssp SCCTTEEEEEEEBSSSEEEEEEEEEESSCCC---------CEEEEESCCCHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CCCCeEEEEeEEEccCCeEEEEEEEEEecccccccCC-CCCeEEEEeCchHHHHHHHHHHHHHHHhcccccccccccCcc
Confidence 457899999999999999999999888 4 56899999986 89999999999999887 7999
Q ss_pred ccEEEEecCC-cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCCh
Q 007957 475 NAIFLNVVSG-VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553 (583)
Q Consensus 475 ~dI~vnl~~g-~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~ 553 (583)
+|||||++|| .+|+||++|||||+||+|++.++|++++++|+|||+|+|+||||+|+++|+.+|+++||+++|+|++|.
T Consensus 86 ~di~vnl~~g~~~K~GpsadLaia~AilSa~~~~p~~~~~a~tGEl~L~G~VrpV~Gi~~ki~~A~~~G~~~vivP~~N~ 165 (207)
T 2x36_A 86 SHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENK 165 (207)
T ss_dssp CEEEEECCSCBCTTTGGGGHHHHHHHHHHHHHTCCCCTTEEECCEECTTSBEECCSCHHHHHHHHHHTTCCEEEEEGGGH
T ss_pred ceEEEEeCCcccCCCCCcchHHHHHHHHHHcCCCCCCCCEEEEEEECCCceEEeecCHHHHHHHHHHcCCCeEEecchhH
Confidence 9999999999 778999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhh---hcCCCCcEEEEeCCHHHHHHHhhc
Q 007957 554 KSLA---TLGFEQMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 554 ~e~~---~~~~~~i~v~~v~~l~e~~~~l~~ 581 (583)
+++. ....+++++++|+||.|++++++.
T Consensus 166 ~e~~~~~~~~~~gi~v~~v~~l~e~~~~l~~ 196 (207)
T 2x36_A 166 KDFYDLAAFITEGLEVHFVEHYREIFDIAFP 196 (207)
T ss_dssp HHHHTSCHHHHTTCEEEEESBHHHHHHHHCT
T ss_pred HHHhhhhHhhcCCCEEEECCCHHHHHHHHhc
Confidence 8742 112468999999999999999874
No 6
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=100.00 E-value=4.1e-33 Score=314.05 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=151.3
Q ss_pred ccccceEEEEEEcCCc-eeEEEEEEEeecC-C--CceEEEechh---HHHHHHHHHHHHHh-cCCCcccccEEEEecCC-
Q 007957 414 EFLAGLAVAVIMDGSR-SFLIEIQALCVSG-S--TVSRHVNGIQ---ASRADMIISVLMKQ-AGLKLQENAIFLNVVSG- 484 (583)
Q Consensus 414 ~~~~G~~~s~~~~G~~-~~lVEvqalv~~~-~--~p~~~~~G~~---~~~~~~~v~~~~k~-~g~~~~~~dI~vnl~~g- 484 (583)
...+|.+++++|.|.+ +.+++|||.++++ + .+++++||+. ++|+.+++.+++++ +|++|+++|||||++||
T Consensus 400 ~~~~g~v~gla~~~~~~g~~~~ie~~~~~~~~~~~g~~~~~g~~~~~~~es~~~~~~~l~~~~~~~~~~~~i~i~~~~~~ 479 (604)
T 3k1j_A 400 GSEIGRVNGLAVIGEQSGIVLPIEAVVAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYKGEDISRYDIHVQFLQTY 479 (604)
T ss_dssp SEETTEEEEEEEETTTEEEEEEEEEEEEECSSSSBCCEEEESCBCHHHHHHHHHHHHHHHHHHCGGGGGEEEEEEETTCT
T ss_pred CcccEEEEEEEEECCCccEEEEEEEEEEeCCCCCCCEEEEecChHHHHHHHHHHHHHHHHhhhccCCCCCcEEEEEcCCc
Confidence 4578999999999998 9999999999984 1 2369999996 88998877766665 99999999999999999
Q ss_pred cccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeCCChhhhh--hcCCC
Q 007957 485 VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA--TLGFE 562 (583)
Q Consensus 485 ~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~~n~~e~~--~~~~~ 562 (583)
.+|+|||+|||||+||+||+.++|++.+++|+|||+|+|+|+||+|+.+|+.+|+++||+++|||++|.+++. ....+
T Consensus 480 ~~~~gpsa~l~~~~ai~sa~~~~~~~~~~~~~Gei~l~G~v~~v~g~~~k~~~a~~~G~~~~iiP~~n~~~~~~~~~~~~ 559 (604)
T 3k1j_A 480 EGVEGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEAAIEAGIKMVIIPKSNEKDVFLSKDKAE 559 (604)
T ss_dssp TCBCSSTTHHHHHHHHHHHHHTCCEETTEEECCEECTTSBEECCSCHHHHHHHHHHHTCCEEEEEGGGGGGCCCCHHHHT
T ss_pred ccCCCccchHHHHHHHHHHcCCCCCCCCeEEEEEecCCceEEeeCCHHHHHHHHHHcCCCEEEECHHHhhhhcccccccC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999988742 11246
Q ss_pred CcEEEEeCCHHHHHHHhhc
Q 007957 563 QMEFIGCKNLKEVINVVFT 581 (583)
Q Consensus 563 ~i~v~~v~~l~e~~~~l~~ 581 (583)
+++|++|+|+.||+++++.
T Consensus 560 ~~~i~~v~~~~e~~~~~~~ 578 (604)
T 3k1j_A 560 KIQIFPVETIDEVLEIALE 578 (604)
T ss_dssp TCEEEEESBHHHHHHHHBC
T ss_pred CcEEEEeCCHHHHHHHHHh
Confidence 8999999999999999874
No 7
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.6e-28 Score=241.07 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=164.0
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
-+|++| |+ ++||++|+||+++|++++|+|+||+|||+|++|++.+.+.. .+.+|+|++.|++.+++..|+.++
T Consensus 9 i~ri~T-Gi--~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~----~~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 9 VRRVKS-GI--PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE----YGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp CCEECC-SC--TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH----HCCCEEEEESSSCHHHHHHHHHTT
T ss_pred CCeecC-Cc--HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCCceeecccCCHHHHHHHHHHc
Confidence 368998 88 99999999999999999999999999999999999876543 257899999999999999999877
Q ss_pred cccccc------cccC------------------Cccc----HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 263 MIATEE------LFLY------------------SSTD----IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 263 ~i~~~~------i~i~------------------~~~~----~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
+.+.+. +.+. .... ++.+...+...+++++|||+++.+.... .+..+
T Consensus 82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~-----~~~~~ 156 (251)
T 2zts_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL-----EEERK 156 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS-----SSGGG
T ss_pred CCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc-----cChHH
Confidence 654321 1110 1111 3345555677899999999999876432 34567
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCc--cCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCccc-cceee
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKS--GDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTDE-LGVFE 389 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~--g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~e-i~~f~ 389 (583)
+++++..|+.+|+++|+++++++|.... ++++++..++++||.|+.|+.... ...|.+++.|+|++++.. ...|.
T Consensus 157 ~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~~~~~~~~~R~l~I~K~R~~~~~~~~~~f~ 236 (251)
T 2zts_A 157 IREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFE 236 (251)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEEEecCCeEEEEEEEEEcCCCCCCCEEEEEE
Confidence 8889999999999999999999998743 577899999999999999975433 356889999999998754 67899
Q ss_pred cccCCeEEecCCCccc
Q 007957 390 MSQLGLQAVSNPSKIF 405 (583)
Q Consensus 390 It~~GL~~v~~ps~if 405 (583)
|++.|++.++ ++++|
T Consensus 237 It~~Gi~v~p-~~~if 251 (251)
T 2zts_A 237 IGPNGIVVYP-SGEIY 251 (251)
T ss_dssp EETTEEEECC------
T ss_pred EeCCcEEEeC-ccccC
Confidence 9999998664 44444
No 8
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.95 E-value=8.8e-28 Score=253.08 Aligned_cols=240 Identities=17% Similarity=0.185 Sum_probs=188.7
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.++.++.... ...|++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +++|+|++
T Consensus 27 ~~~l~~~~~~~--~~~~i~T-G~--~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-----gg~VlyId 96 (356)
T 3hr8_A 27 IMILGDETQVQ--PVEVIPT-GS--LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-----GGVAAFID 96 (356)
T ss_dssp SCCTTCCSCCC--CCCEECC-SC--HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred ceechhccccC--CCceecC-CC--HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEe
Confidence 45676665321 1368888 88 99999999 999999999999999999999999999998874 67899999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc----ccCCCEEEEccchhhhh-hcccCCCCCH------HHHH
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ----PLSPRALIIDSIQTVYL-RGVAGSAGGL------MQVK 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~----~~~p~lVVIDsi~~l~~-~~~~~~~g~~------~qvr 316 (583)
+|++..+. |+++++++.+++.+....+.+++++.+. ..+++++|||++++++. ..+.+.+++. ..+.
T Consensus 97 ~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la 174 (356)
T 3hr8_A 97 AEHALDPV--YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS 174 (356)
T ss_dssp SSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH
T ss_pred cccccchH--HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH
Confidence 99988776 7888999988888877777776665544 46899999999999885 5555554442 3345
Q ss_pred HHHHHHHHHHHcCCCcEEEecccC-CccC-------cCCccchheeccEEEEEeCc-------ee-ceeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVT-KSGD-------IAGPRVLEHIVDAVLYMEGE-------KF-SSYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~-k~g~-------~ag~~~Le~~aD~Vl~Le~~-------~~-~~~R~L~i~KnR~g 380 (583)
++++.|..++++++++||+++|+. +.+. .+|+..++|++|++++|++. +. ...|.++++|||++
T Consensus 175 ~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~ 254 (356)
T 3hr8_A 175 QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVA 254 (356)
T ss_dssp HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCCCC
Confidence 567778899999999999999994 4333 46789999999999999862 22 34688999999999
Q ss_pred Cccccceeec-ccCCeEEecCCCcccccccccccccccceEEEE
Q 007957 381 STDELGVFEM-SQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAV 423 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~v~~ps~ifl~~r~~~~~~~~G~~~s~ 423 (583)
++.+...|.| .+.|+..+.+...+......- ...|.-++.
T Consensus 255 ~~~~~~~f~i~~~~Gi~~~~~~~~~~~~~~~i---~~~g~w~~~ 295 (356)
T 3hr8_A 255 PPFKTAQTYIIYGKGIDREYELFNIAVNEGIV---DRKGSWYYY 295 (356)
T ss_dssp CCCCEEEEEEETTTBSCHHHHHHHHHHHTTSS---EEETTEEEE
T ss_pred CCCceEEEEEeeCCCcChhccHHHHHHHcChh---hccCcEEEE
Confidence 9999999999 699999888776665433221 235655544
No 9
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.7e-26 Score=226.26 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=160.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
.|++| |+ ++||++|+||+++|++++|.|+||+|||||+++++..++.. +.+|+|+++|++..++..|+.+++
T Consensus 3 ~~i~t-G~--~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e~~~~~~~~~~~~~g 74 (247)
T 2dr3_A 3 RRVKT-GI--PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALEEHPVQVRQNMAQFG 74 (247)
T ss_dssp CEECC-CC--TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSSCHHHHHHHHHTTT
T ss_pred ccccC-Cc--hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccCCHHHHHHHHHHcC
Confidence 47787 88 99999999999999999999999999999999999988864 678999999999999999988777
Q ss_pred cccc------ccccC-------------------Cccc----HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 264 IATE------ELFLY-------------------SSTD----IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 264 i~~~------~i~i~-------------------~~~~----~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
++.+ ++.+. ...+ .+.+.+.+.+.+++++|||+++.+... +..+
T Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-------~~~~ 147 (247)
T 2dr3_A 75 WDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-------KPAM 147 (247)
T ss_dssp CCCHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-------CGGG
T ss_pred CCHHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-------CHHH
Confidence 6532 12111 1123 334445556678999999999987521 2345
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCccC-cCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeec
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGD-IAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEM 390 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g~-~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~I 390 (583)
.++.+..|.+++++.|++||+++|.+++.. ..++ .++++||.|+.|++... ...|.+++.|+|+++++ ....|.|
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~-~~~~~~D~vi~L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i 226 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGP-GVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDI 226 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----CCC-C-CHHHHSSEEEEEEEEEETTEEEEEEEEEEETTSCCCCBCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCccccccc-ccceeEEEEEEEEEEccCCeeEEEEEEEECCCCCCCCceEEEEE
Confidence 678888999999999999999999998643 3344 48899999999987543 24689999999999886 6889999
Q ss_pred ccCCeEEecCCCccc
Q 007957 391 SQLGLQAVSNPSKIF 405 (583)
Q Consensus 391 t~~GL~~v~~ps~if 405 (583)
++.|+..+. ++.+|
T Consensus 227 ~~~Gi~~~~-~~~~~ 240 (247)
T 2dr3_A 227 TDKGIIVYP-DKVLK 240 (247)
T ss_dssp ETTEEEECT-TCCCC
T ss_pred cCCCEEEec-Ccccc
Confidence 999998766 34444
No 10
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.94 E-value=3.5e-26 Score=237.71 Aligned_cols=199 Identities=18% Similarity=0.247 Sum_probs=156.9
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..+++| |+ ++||+++ ||+++|++++|+|+||+|||||+++++..++.. +.+|+|||+|++.+++..|+...
T Consensus 48 ~~~i~T-G~--~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-----g~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 48 ITGVPS-GF--TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp CCSBCC-SC--HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-----TCEEEEEESSSCHHHHHHHHHHH
T ss_pred CCCccC-Ch--HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEECCCCHHHHHHHHHHH
Confidence 358888 88 9999999 999999999999999999999999999998874 57999999999999999997532
Q ss_pred --cccc---------------------------cccccCCc--ccHHHHHHHh----cccCCC--EEEEccchhhhhhcc
Q 007957 263 --MIAT---------------------------EELFLYSS--TDIEDIVEKV----QPLSPR--ALIIDSIQTVYLRGV 305 (583)
Q Consensus 263 --~i~~---------------------------~~i~i~~~--~~~e~i~~~i----~~~~p~--lVVIDsi~~l~~~~~ 305 (583)
+++. .++++.+. .+++++...+ .+++++ +||||+++.+...
T Consensus 119 ~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~-- 196 (315)
T 3bh0_A 119 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-- 196 (315)
T ss_dssp HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS--
T ss_pred HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC--
Confidence 3321 12333332 3455554443 445788 9999999988632
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCcee-------c
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKF-------S 367 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~-------~ 367 (583)
....+...++.++++.|+.+|+++|++||+++|+++. ++++|++.++++||.|++|+++.. .
T Consensus 197 ~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~ 276 (315)
T 3bh0_A 197 KANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESK 276 (315)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCC
Confidence 1123345788999999999999999999999999865 247889999999999999987643 2
Q ss_pred eeeeEEEEecccCCccccceeeccc
Q 007957 368 SYRLLRSVKNRFGSTDELGVFEMSQ 392 (583)
Q Consensus 368 ~~R~L~i~KnR~g~~~ei~~f~It~ 392 (583)
..+.+.+.|||+|+++++...+..+
T Consensus 277 ~~~~l~v~K~R~G~~g~~~l~f~~~ 301 (315)
T 3bh0_A 277 NIVEVIIAKHRDGPVGTVSLAFIKE 301 (315)
T ss_dssp TEEEEEEEEETTSCCEEEEEEEEGG
T ss_pred CcEEEEEECCcCCCCceEEEEEECC
Confidence 4578999999999998765544433
No 11
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.93 E-value=7.3e-26 Score=223.88 Aligned_cols=210 Identities=20% Similarity=0.296 Sum_probs=150.5
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCcc--CHHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEE--SVEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ee--s~~qi~~R~~ 260 (583)
.+++| |+ ++||++|+||+++|++++|.|+||+|||||+++++..+.... ..+.+.+++|+++|+ +..++..++.
T Consensus 4 ~~i~t-G~--~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 4 IQITT-GS--KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CEECC-SC--HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred eEecC-CC--hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 47787 88 999999999999999999999999999999999999754311 001246899999999 4777888888
Q ss_pred hccccc----cccccCCccc-------HHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHH----HHHHHHHHHHHH
Q 007957 261 RMMIAT----EELFLYSSTD-------IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM----QVKECTSALLRF 325 (583)
Q Consensus 261 rl~i~~----~~i~i~~~~~-------~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~----qvrei~~~L~~l 325 (583)
+++++. +++.+....+ ++.+.+.+...+|++||||+++.++.....+. ++.. .+++++..|+++
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHH
Confidence 888775 4554433322 22344555667899999999998875433221 1212 277889999999
Q ss_pred HHcCCCcEEEecccCCccCc-----------CCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCC
Q 007957 326 AKKTNIPVLLAGHVTKSGDI-----------AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394 (583)
Q Consensus 326 Ak~~g~tVIlisH~~k~g~~-----------ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~G 394 (583)
++++|++||+++|..++... +|+..++++||.|+.|++++ ...|.+.+.|+|+++.++ ..|.|++.|
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~-~~~r~l~v~K~r~~~~~~-~~f~I~~~G 237 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR-GETRICKIYDSPCLPEAE-AMFAINADG 237 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEECS-TTEEEEEECCBTTBSCEE-EEEEEETTE
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC-CCeEEEEEEECCCCCCCe-EEEEEeCCc
Confidence 99999999999998876332 56667999999999998754 357899999999998776 789999999
Q ss_pred eEEec
Q 007957 395 LQAVS 399 (583)
Q Consensus 395 L~~v~ 399 (583)
++.+.
T Consensus 238 i~~~~ 242 (243)
T 1n0w_A 238 VGDAK 242 (243)
T ss_dssp EECCC
T ss_pred cccCC
Confidence 98653
No 12
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.93 E-value=3.6e-25 Score=215.61 Aligned_cols=201 Identities=23% Similarity=0.378 Sum_probs=156.8
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHHHHhc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNRADRM 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R~~rl 262 (583)
|++| |+ +.||++++||+++|++++|.|+||+|||||+++++. .. +.+|+|++.|+ +..++...+..+
T Consensus 1 ri~t-G~--~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~------~~~v~~i~~~~~~~~~~~~~~~~~~ 69 (220)
T 2cvh_A 1 MLST-GT--KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS------GKKVAYVDTEGGFSPERLVQMAETR 69 (220)
T ss_dssp CBCC-SC--HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH------CSEEEEEESSCCCCHHHHHHHHHTT
T ss_pred Cccc-Cc--HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc------CCcEEEEECCCCCCHHHHHHHHHhc
Confidence 5677 88 999999999999999999999999999999999998 22 57899999998 888887776666
Q ss_pred ccccc----ccccCCcc---cHHHHHH----HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCC
Q 007957 263 MIATE----ELFLYSST---DIEDIVE----KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNI 331 (583)
Q Consensus 263 ~i~~~----~i~i~~~~---~~e~i~~----~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~ 331 (583)
+++.+ ++++.... +..++++ .+.. +|++||||+++.++..... ......++.++++.|+++++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 70 GLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEEN-RSGLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp TCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGG-SSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCc-hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 65432 23333222 2222222 2333 7999999999987643211 122456778889999999999999
Q ss_pred cEEEecccCCcc-----CcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeEEe
Q 007957 332 PVLLAGHVTKSG-----DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398 (583)
Q Consensus 332 tVIlisH~~k~g-----~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~~v 398 (583)
+||+++|..++. ...++..++++||.|+.|++......|.+.+.|+|+++.++...|.|++.|++.+
T Consensus 148 ~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~~ 219 (220)
T 2cvh_A 148 PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV 219 (220)
T ss_dssp CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSSCTTCEEEEEEETTEEEEC
T ss_pred EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCCCCCceEEEEEeCCceecC
Confidence 999999998753 2456668999999999998764456789999999999988889999999999864
No 13
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.93 E-value=1.1e-25 Score=240.84 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=158.4
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||+++|++++|+|+||+|||||+++++........ .+.+.+++||++|++ ...+..++
T Consensus 157 ~~~i~T-G~--~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a 233 (400)
T 3lda_A 157 LICLTT-GS--KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 233 (400)
T ss_dssp SCEECC-SC--HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHH
T ss_pred CCcccc-CC--hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHH
Confidence 357887 88 9999999999999999999999999999999999876554211 113568999999986 66677788
Q ss_pred Hhcccccc----ccccCCcccH-------HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCH----HHHHHHHHHHHH
Q 007957 260 DRMMIATE----ELFLYSSTDI-------EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL----MQVKECTSALLR 324 (583)
Q Consensus 260 ~rl~i~~~----~i~i~~~~~~-------e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~~~L~~ 324 (583)
++++++.+ ++++....+. +++.+.+...+|++||||+++.++.....+ ++.. ..+.+++..|++
T Consensus 234 ~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~ 312 (400)
T 3lda_A 234 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQR 312 (400)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHH
Confidence 88888754 4444333222 234445556789999999999988655433 2332 224778899999
Q ss_pred HHHcCCCcEEEecccC--CccC---------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccC
Q 007957 325 FAKKTNIPVLLAGHVT--KSGD---------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393 (583)
Q Consensus 325 lAk~~g~tVIlisH~~--k~g~---------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~ 393 (583)
+++++|++||+++|++ +++. ..|+..++|++|++++|++++. ..|.+++.|+|++++++ ..|.|++.
T Consensus 313 lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g-~~R~l~v~K~R~~p~~e-~~F~It~~ 390 (400)
T 3lda_A 313 LADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKG-CQRLCKVVDSPCLPEAE-CVFAIYED 390 (400)
T ss_dssp HHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECST-TEEEEEEEECSSSCSCE-EEEEEETT
T ss_pred HHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecCC-CcEEEEEEcCCCCCCCc-eEEEEeCC
Confidence 9999999999999994 4332 2367899999999999998654 46999999999999988 89999999
Q ss_pred CeEEecC
Q 007957 394 GLQAVSN 400 (583)
Q Consensus 394 GL~~v~~ 400 (583)
|+..+.+
T Consensus 391 Gi~~~~~ 397 (400)
T 3lda_A 391 GVGDPRE 397 (400)
T ss_dssp EEECCC-
T ss_pred ccccccc
Confidence 9987653
No 14
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.93 E-value=2.7e-25 Score=231.10 Aligned_cols=208 Identities=21% Similarity=0.358 Sum_probs=163.9
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-------CCCCC----ccEEEEeCccC
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-------DLGEP----SPVVYVSGEES 251 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~-------~~~~~----~~VLyis~Ees 251 (583)
..+++| |+ ++||++|+||+++|++++|+|+||+|||+|+++++...+... +...+ .+|+|+++|++
T Consensus 77 ~~~i~T-G~--~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 77 VWKLST-SS--SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp CCEECC-SC--HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCeecC-CC--hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 357887 88 999999999999999999999999999999999998754211 00012 68999999997
Q ss_pred --HHHHHHHHHhccccc----cccccCCcccHH-------HHHHHhcc-cCCCEEEEccchhhhhhcccCCCCC----HH
Q 007957 252 --VEQIGNRADRMMIAT----EELFLYSSTDIE-------DIVEKVQP-LSPRALIIDSIQTVYLRGVAGSAGG----LM 313 (583)
Q Consensus 252 --~~qi~~R~~rl~i~~----~~i~i~~~~~~e-------~i~~~i~~-~~p~lVVIDsi~~l~~~~~~~~~g~----~~ 313 (583)
++++..++.+++++. +++++....+.+ .+...+.+ .++++||||+++.++.....+. ++ ..
T Consensus 154 ~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~ 232 (322)
T 2i1q_A 154 FRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQ 232 (322)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHH
Confidence 899999999988876 345554444433 24445555 6799999999999876544321 22 23
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccC--------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCcccc
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGD--------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDEL 385 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~--------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei 385 (583)
.+.++++.|++++++++++||+++|+++..+ ..|+..++|.+|.+++|++++ ...|.+++.|+|+++.++.
T Consensus 233 ~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~~-~~~r~~~v~k~~~~p~~~~ 311 (322)
T 2i1q_A 233 KLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGK-GDKRVAKLYDSPHLPDAEA 311 (322)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEECS-TTEEEEEEEECSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEecC-CCeEEEEEEECCCCCCeEE
Confidence 5788999999999999999999999987632 457778999999999998765 3468999999999988775
Q ss_pred ceeecccCCeE
Q 007957 386 GVFEMSQLGLQ 396 (583)
Q Consensus 386 ~~f~It~~GL~ 396 (583)
.|.|++.|+.
T Consensus 312 -~f~I~~~Gi~ 321 (322)
T 2i1q_A 312 -IFRITEKGIQ 321 (322)
T ss_dssp -EEEEETTEEE
T ss_pred -EEEEeCCCcC
Confidence 9999999985
No 15
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.92 E-value=3.8e-25 Score=230.69 Aligned_cols=211 Identities=20% Similarity=0.332 Sum_probs=154.8
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..+++| |+ ++||++|+||+++|++++|+|+||+|||||+++++..++.... .+.+.+|+|+++|++ ++++..++
T Consensus 86 ~~~i~T-G~--~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 86 VKKIST-GS--QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp CCEECC-SC--HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCcccC-Cc--hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 357887 88 9999999999999999999999999999999999988654210 112468999999997 88999999
Q ss_pred Hhcccccc----ccccCCcccHH-------HHHHHhcc-cCCCEEEEccchhhhhhcccCCCCC----HHHHHHHHHHHH
Q 007957 260 DRMMIATE----ELFLYSSTDIE-------DIVEKVQP-LSPRALIIDSIQTVYLRGVAGSAGG----LMQVKECTSALL 323 (583)
Q Consensus 260 ~rl~i~~~----~i~i~~~~~~e-------~i~~~i~~-~~p~lVVIDsi~~l~~~~~~~~~g~----~~qvrei~~~L~ 323 (583)
.+++++.+ ++++....+.+ .+...+.+ .++++||||+++.++.....+. ++ ...+.++++.|+
T Consensus 163 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~ 241 (324)
T 2z43_A 163 KALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLT 241 (324)
T ss_dssp HHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHH
Confidence 99988763 45544433332 34445555 6899999999999876544321 22 235788999999
Q ss_pred HHHHcCCCcEEEecccCCccC--------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCe
Q 007957 324 RFAKKTNIPVLLAGHVTKSGD--------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395 (583)
Q Consensus 324 ~lAk~~g~tVIlisH~~k~g~--------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL 395 (583)
+++++++++||+++|+++..+ ..++..++|.+|.+++|++.+ ...|.+++.|+|+++.++ ..|.|++.|+
T Consensus 242 ~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r~~-~~~r~~~v~k~~~~p~~~-~~f~I~~~Gi 319 (324)
T 2z43_A 242 RLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSR-GNRRIARVVDAPHLPEGE-VVFALTEEGI 319 (324)
T ss_dssp HHHHHHTCEEEEEEEC------------------------CEEEEEEECS-TTEEEEEEEECSSSCCEE-EEEEEETTEE
T ss_pred HHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEEcC-CCeEEEEEEECCCCCceE-EEEEEeCCCc
Confidence 999999999999999987532 457788999999999998765 346899999999998776 4899999999
Q ss_pred EEec
Q 007957 396 QAVS 399 (583)
Q Consensus 396 ~~v~ 399 (583)
..+.
T Consensus 320 ~~~~ 323 (324)
T 2z43_A 320 RDAE 323 (324)
T ss_dssp ECCC
T ss_pred ccCC
Confidence 8653
No 16
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.92 E-value=3.2e-25 Score=233.11 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=161.2
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..+++| |+ ++||++|+||+++|++++|+|+||+|||||+++++...+.... ++.+.+|+||++|++ ++++..++
T Consensus 101 ~~~i~T-G~--~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 101 VFHITT-GS--QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp CCCBCC-SC--HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred cceeec-CC--hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 357887 88 9999999999999999999999999999999999998654210 112568999999996 88999999
Q ss_pred Hhccccc----cccccCCcccHH-------HHHHHhcc--cCCCEEEEccchhhhhhcccCCCCC----HHHHHHHHHHH
Q 007957 260 DRMMIAT----EELFLYSSTDIE-------DIVEKVQP--LSPRALIIDSIQTVYLRGVAGSAGG----LMQVKECTSAL 322 (583)
Q Consensus 260 ~rl~i~~----~~i~i~~~~~~e-------~i~~~i~~--~~p~lVVIDsi~~l~~~~~~~~~g~----~~qvrei~~~L 322 (583)
.+++++. +++++....+.+ .+...+.. .++++||||+++.++.....+. ++ ...+.++++.|
T Consensus 178 ~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L 256 (343)
T 1v5w_A 178 DRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRL 256 (343)
T ss_dssp HHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHH
Confidence 9988876 355543332222 23344555 6899999999999886543211 22 22478899999
Q ss_pred HHHHHcCCCcEEEecccCCccC-----------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecc
Q 007957 323 LRFAKKTNIPVLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMS 391 (583)
Q Consensus 323 ~~lAk~~g~tVIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It 391 (583)
++++++++++||+++|+++..+ ..|+..++|++|.+++|++.+ ...|.+++.|+|+++.++. .|.|+
T Consensus 257 ~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~-~~~r~~~v~K~r~~p~~~~-~f~I~ 334 (343)
T 1v5w_A 257 QKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR-GELRIAKIYDSPEMPENEA-TFAIT 334 (343)
T ss_dssp HHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEESS-TTEEEEEEEECTTCCSSCE-EEEEE
T ss_pred HHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcC-CCEEEEEEEECCCCCCeeE-EEEEe
Confidence 9999999999999999987532 136678999999999999754 3568999999999987765 99999
Q ss_pred cCCeEEec
Q 007957 392 QLGLQAVS 399 (583)
Q Consensus 392 ~~GL~~v~ 399 (583)
+.|+..+.
T Consensus 335 ~~Gi~~~~ 342 (343)
T 1v5w_A 335 AGGIGDAK 342 (343)
T ss_dssp TTEEEECC
T ss_pred CCCccCCC
Confidence 99998754
No 17
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.92 E-value=5.7e-25 Score=238.77 Aligned_cols=198 Identities=18% Similarity=0.236 Sum_probs=156.1
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh-
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR- 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r- 261 (583)
..+++| |+ ++||+++ ||+++|++++|+|+||+|||||+++++..++.. +.+|+|||+|++.+++..|+..
T Consensus 177 ~~gi~T-G~--~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 177 ITGVPS-GF--TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp CCSBCC-SC--HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSSSCTTHHHHHHHHH
T ss_pred CCCcCC-Cc--HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHH
Confidence 357887 88 9999999 699999999999999999999999999999874 6799999999999999998742
Q ss_pred -ccccc---------------------------cccccCCc--ccHHHHHHHh----cccCCC--EEEEccchhhhhhcc
Q 007957 262 -MMIAT---------------------------EELFLYSS--TDIEDIVEKV----QPLSPR--ALIIDSIQTVYLRGV 305 (583)
Q Consensus 262 -l~i~~---------------------------~~i~i~~~--~~~e~i~~~i----~~~~p~--lVVIDsi~~l~~~~~ 305 (583)
.+++. .++++.+. .+++++...+ .+++++ +||||++|.+.....
T Consensus 248 ~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~ 327 (444)
T 3bgw_A 248 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA 327 (444)
T ss_dssp HSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS
T ss_pred HcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC
Confidence 23321 12233222 3455555443 345899 999999998763221
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS------- 367 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~------- 367 (583)
..+...++.++++.|+.+|+++|++||+++|+++. +++++++.++++||.|++|++++.+
T Consensus 328 --~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~ 405 (444)
T 3bgw_A 328 --NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESK 405 (444)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSST
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCC
Confidence 23456789999999999999999999999999864 2567889999999999999986542
Q ss_pred eeeeEEEEecccCCccccceeecc
Q 007957 368 SYRLLRSVKNRFGSTDELGVFEMS 391 (583)
Q Consensus 368 ~~R~L~i~KnR~g~~~ei~~f~It 391 (583)
..+.+.+.|||+|+++.+...+..
T Consensus 406 ~~~~l~i~K~R~G~~g~v~l~f~~ 429 (444)
T 3bgw_A 406 NIVEVIIAKHRDGPVGTVSLAFIK 429 (444)
T ss_dssp TEEEEEEEEESSSCCEEEEEEEET
T ss_pred CeEEEEEEcccCCCCeEEEEEEEc
Confidence 357899999999999876544433
No 18
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.92 E-value=8.7e-25 Score=214.21 Aligned_cols=203 Identities=22% Similarity=0.401 Sum_probs=150.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~~ 260 (583)
++++| |+ ++||++|+||+++|++++|.|+||+|||||++++++.+....+ ...+.+++|+++++. .+++...++
T Consensus 5 ~~i~t-G~--~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 5 GRIST-GS--KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CEECC-SC--HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CccCC-CC--hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 57787 88 9999999999999999999999999999999999997664211 112457999999875 667777777
Q ss_pred hcccccc----ccccCCccc-------HHHHHHHhc-----ccCCCEEEEccchhhhhhcccCCCCCHHH----HHHHHH
Q 007957 261 RMMIATE----ELFLYSSTD-------IEDIVEKVQ-----PLSPRALIIDSIQTVYLRGVAGSAGGLMQ----VKECTS 320 (583)
Q Consensus 261 rl~i~~~----~i~i~~~~~-------~e~i~~~i~-----~~~p~lVVIDsi~~l~~~~~~~~~g~~~q----vrei~~ 320 (583)
.+++..+ ++.+..... ++.+.+.+. ..+|++++||++++.+.....+. ++..+ +++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~-~~~~~r~~~~~~~~~ 160 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLA 160 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST-THHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC-cchhHHHHHHHHHHH
Confidence 7776543 333322211 344455555 67899999999999876655432 22333 568899
Q ss_pred HHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecccCCeE
Q 007957 321 ALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396 (583)
Q Consensus 321 ~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It~~GL~ 396 (583)
.|.+++++.|++||+++|..++ +...++++||.+++|++++ ...|.+++.|+|+++.++. .|.|++.|++
T Consensus 161 ~l~~~~~~~g~tvi~vtH~~~~----~g~~~~~~~d~~l~l~~~~-~~~r~l~~~K~r~~~~~~~-~f~i~~~Gl~ 230 (231)
T 4a74_A 161 DLHRLANLYDIAVFVTNQVQAN----GGHILAHSATLRVYLRKGK-GGKRIARLIDAPHLPEGEA-VFSITEKGIE 230 (231)
T ss_dssp HHHHHHHHHTCEEEEEEECC-------------CCSEEEEEEECT-TSCEEEEEESCC--CCSCE-EEEEETTEEE
T ss_pred HHHHHHHHCCCeEEEEeecccC----cchhhHhhceEEEEEEecC-CCeEEEEEEeCCCCCCceE-EEEEeccccc
Confidence 9999999999999999999876 5678999999999998754 4678999999999999886 9999999986
No 19
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.92 E-value=1.5e-25 Score=234.56 Aligned_cols=197 Identities=26% Similarity=0.313 Sum_probs=154.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
.+++| |+ ++||+++ ||+.+|++++|+|+||+|||||+++++..++.. +.+|+|||+|++.+++..|+...
T Consensus 27 ~gi~T-G~--~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----g~~Vl~fSlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 27 TGIPT-GF--VQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-----DRGVAVFSLEMSAEQLALRALSDL 97 (338)
T ss_dssp CSBCC-SC--HHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSSCHHHHHHHHHHHH
T ss_pred CcccC-CC--hHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHHh
Confidence 57887 88 9999999 699999999999999999999999999999874 67999999999999999987321
Q ss_pred -cccc-------------------------cccccCCcc--cHHHHHHHhc----cc-CCCEEEEccchhhhhhcccCCC
Q 007957 263 -MIAT-------------------------EELFLYSST--DIEDIVEKVQ----PL-SPRALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 263 -~i~~-------------------------~~i~i~~~~--~~e~i~~~i~----~~-~p~lVVIDsi~~l~~~~~~~~~ 309 (583)
+++. .++++.+.. +++++...+. .+ ++++||||++|.+..... ..
T Consensus 98 ~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~--~~ 175 (338)
T 4a1f_A 98 TSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA--TK 175 (338)
T ss_dssp HCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH--HH
T ss_pred hCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC--CC
Confidence 1111 124444332 4555554443 44 799999999998864321 12
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-----------
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS----------- 367 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~----------- 367 (583)
+...++.++++.|+.+|++++++||+++|+++. ++++|++.+|+.||.|++|+++.++
T Consensus 176 ~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~ 255 (338)
T 4a1f_A 176 ERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDK 255 (338)
T ss_dssp HCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEECHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEecchhcccccccccccc
Confidence 344568999999999999999999999999875 3678899999999999999986432
Q ss_pred ------------------------------eeeeEEEEecccCCccccceeecc
Q 007957 368 ------------------------------SYRLLRSVKNRFGSTDELGVFEMS 391 (583)
Q Consensus 368 ------------------------------~~R~L~i~KnR~g~~~ei~~f~It 391 (583)
....+.+.|||+|+++.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~l~f~~ 309 (338)
T 4a1f_A 256 LKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRFNA 309 (338)
T ss_dssp HHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEEEEEEG
T ss_pred cccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEEEEEcc
Confidence 124688899999999987655443
No 20
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.92 E-value=2.3e-24 Score=237.51 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=166.5
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHH--H
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRA--D 260 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~--~ 260 (583)
..+++|.|+ ++||+++ ||+++|++++|+|+||+|||||+++++..++.. .+.+|+|+|+|++.+++..|+ .
T Consensus 221 ~~~i~t~G~--~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 221 SVGLLFSGC--TGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLEESVEETAEDLIGL 293 (503)
T ss_dssp TTCSCCSSC--TTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCccccch--hhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEeccCCHHHHHHHHHHH
Confidence 347776477 9999999 699999999999999999999999999999864 256899999999999999886 3
Q ss_pred hccccc--------------------------cccccCCc---ccHHHHHHHh----cccCCCEEEEccchhhhhhcccC
Q 007957 261 RMMIAT--------------------------EELFLYSS---TDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 261 rl~i~~--------------------------~~i~i~~~---~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
..+++. .++++.+. .++++++..+ .++++++||||+++.+... ..
T Consensus 294 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~--~~ 371 (503)
T 1q57_A 294 HNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA--SG 371 (503)
T ss_dssp HTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC--CS
T ss_pred HcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC--CC
Confidence 334332 22344432 4556655443 4568999999999987532 11
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC-c-------------cCcCCccchheeccEEEEEeCcee---ceee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK-S-------------GDIAGPRVLEHIVDAVLYMEGEKF---SSYR 370 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k-~-------------g~~ag~~~Le~~aD~Vl~Le~~~~---~~~R 370 (583)
..+...++.++++.|+.+|+++|++||+++|+++ + ++++|++.++++||.|++|++++. ...+
T Consensus 372 ~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~~~ 451 (503)
T 1q57_A 372 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLV 451 (503)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCCeE
Confidence 2345678899999999999999999999999987 1 357789999999999999987654 2468
Q ss_pred eEEEEecc-cCCcccc--ceeecccCCeEEecCCCcc
Q 007957 371 LLRSVKNR-FGSTDEL--GVFEMSQLGLQAVSNPSKI 404 (583)
Q Consensus 371 ~L~i~KnR-~g~~~ei--~~f~It~~GL~~v~~ps~i 404 (583)
.+++.||| .|+++.+ ..|......+..+.+|+..
T Consensus 452 ~l~v~K~R~~G~~g~~~~l~f~~~~~~f~~~~~~~~~ 488 (503)
T 1q57_A 452 LVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSGEE 488 (503)
T ss_dssp EEEEEEETTTCCCEEEEEEEECTTTCCEEEECCCC--
T ss_pred EEEEEeccCCCCCCceEEEEEEcCCceEecCCCCCcc
Confidence 99999999 5999886 3677777888888888653
No 21
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.92 E-value=4e-24 Score=225.26 Aligned_cols=217 Identities=18% Similarity=0.264 Sum_probs=165.9
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.++.++... ...+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+|++
T Consensus 28 ~~~l~~~~~~---~~~~i~T-G~--~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyi~ 96 (349)
T 2zr9_A 28 VMRLGEEVRQ---PISVIPT-GS--ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-----GGIAAFID 96 (349)
T ss_dssp SCCTTCCCCC---CCCEECC-SC--HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred ceeccccccc---cCCcccc-CC--HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEE
Confidence 3445555321 2468888 88 99999999 999999999999999999999999999998874 67899999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHh----cccCCCEEEEccchhhhh-hcccCCCCCH---H---HHH
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV----QPLSPRALIIDSIQTVYL-RGVAGSAGGL---M---QVK 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~---qvr 316 (583)
.|++.++. ++.+++++.+++++....+.+++++.+ ...+|++|||||+++++. .+..+..++. . .+.
T Consensus 97 ~E~~~~~~--~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~ 174 (349)
T 2zr9_A 97 AEHALDPE--YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMS 174 (349)
T ss_dssp SSCCCCHH--HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHH
T ss_pred CCCCcCHH--HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHH
Confidence 99987765 467889888888877776666655443 356799999999999873 3333333332 2 346
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCc-----c---CcCCccchheeccEEEEEeCcee--------ceeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKS-----G---DIAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~-----g---~~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g 380 (583)
+.+..|..+++++|++||+++|++.. + ...|+..++|+||.++.+++.+. ...+.+++.|||.+
T Consensus 175 ~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~ 254 (349)
T 2zr9_A 175 QALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVS 254 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCccccCCEEEEEeCCCccC
Confidence 67777888889999999999999863 1 12466789999999999986532 24678999999999
Q ss_pred Cccccceeec-ccCCeEEe
Q 007957 381 STDELGVFEM-SQLGLQAV 398 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~v 398 (583)
|+.....|.+ .+.|+...
T Consensus 255 p~~~~~~fdi~~~~Gi~~~ 273 (349)
T 2zr9_A 255 PPFKQAEFDILYGQGISRE 273 (349)
T ss_dssp CCCCEEEEEEETTSCBCHH
T ss_pred CCCceEEEEEEeCCCcCcc
Confidence 9777778887 57887643
No 22
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.91 E-value=6.2e-24 Score=230.73 Aligned_cols=198 Identities=20% Similarity=0.289 Sum_probs=151.0
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--h
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--R 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--r 261 (583)
.+++| |+ ++||+++ ||+++|++++|+|+||+|||||+++++..++.. .+.+|+|||+|++.+++..|+. .
T Consensus 181 ~~i~t-G~--~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 181 AGVRT-GF--KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp --CCC-SC--HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CcccC-CC--Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHH
Confidence 57777 88 9999999 899999999999999999999999999998863 2578999999999999999863 3
Q ss_pred cccccc-------------------------ccccCCc--ccHHHHHHH----hcccCCCEEEEccchhhhhhc-ccCCC
Q 007957 262 MMIATE-------------------------ELFLYSS--TDIEDIVEK----VQPLSPRALIIDSIQTVYLRG-VAGSA 309 (583)
Q Consensus 262 l~i~~~-------------------------~i~i~~~--~~~e~i~~~----i~~~~p~lVVIDsi~~l~~~~-~~~~~ 309 (583)
.+++.. ++++.+. .++.++... ..++++++||||+++.+.... .....
T Consensus 253 ~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~ 332 (444)
T 2q6t_A 253 ARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGE 332 (444)
T ss_dssp TTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------
T ss_pred cCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCC
Confidence 333322 2233222 245554443 335689999999999875320 11113
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-----------cCcCCccchheeccEEEEEeCceec-------eeee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-----------GDIAGPRVLEHIVDAVLYMEGEKFS-------SYRL 371 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-----------g~~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~ 371 (583)
+...++.++++.|+.+|++++++||+++|+++. +++++++.+++.||.|++|+++..+ ..+.
T Consensus 333 ~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~ 412 (444)
T 2q6t_A 333 NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAE 412 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCCeEE
Confidence 456778999999999999999999999998864 2456778999999999999876542 4678
Q ss_pred EEEEecccCCccccceee
Q 007957 372 LRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 372 L~i~KnR~g~~~ei~~f~ 389 (583)
+.+.|+|+|+++.+...+
T Consensus 413 l~i~K~R~g~~g~~~l~f 430 (444)
T 2q6t_A 413 IIVGKQRNGPTGTVELQF 430 (444)
T ss_dssp EEEEECSSSCCEEEEEEE
T ss_pred EEEEecCCCCceEEEEEE
Confidence 999999999988754444
No 23
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.91 E-value=6.5e-24 Score=231.22 Aligned_cols=200 Identities=21% Similarity=0.308 Sum_probs=153.3
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH--h
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD--R 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~--r 261 (583)
.+++| |+ +.||+++ ||+++|++++|+|+||+|||||+++++..++.. .+.+|+|++.|++..++..|+. .
T Consensus 184 ~~i~t-G~--~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 184 TGIPT-GF--TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLEMSAQQLVMRMLCAE 255 (454)
T ss_dssp CSBCC-SC--HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCCC-Cc--HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHHHHH
Confidence 57887 88 9999999 899999999999999999999999999999874 2568999999999999998863 3
Q ss_pred cccccc-------------------------ccccCCc--ccHHHHHH----HhcccCCCEEEEccchhhhhhcccCCCC
Q 007957 262 MMIATE-------------------------ELFLYSS--TDIEDIVE----KVQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 262 l~i~~~-------------------------~i~i~~~--~~~e~i~~----~i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
.+++.. ++++.+. .++.++.. .+..+++++||||+++.+..... ...+
T Consensus 256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~-~~~~ 334 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGR-SKEN 334 (454)
T ss_dssp HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC-----
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCC-CCCC
Confidence 343322 1222221 23444433 33456899999999998763321 1235
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccC-----------cCCccchheeccEEEEEeCceec-------eeeeE
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD-----------IAGPRVLEHIVDAVLYMEGEKFS-------SYRLL 372 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~-----------~ag~~~Le~~aD~Vl~Le~~~~~-------~~R~L 372 (583)
+..++.++++.|+.+|+++|++||+++|+++..+ +++++.++++||.|++|++++.+ ..+.+
T Consensus 335 ~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~~~~~~~~~~l 414 (454)
T 2r6a_A 335 RQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEI 414 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-------CCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCcccCCCCeEEE
Confidence 7888999999999999999999999999887532 34567899999999999876542 46789
Q ss_pred EEEecccCCccccceeeccc
Q 007957 373 RSVKNRFGSTDELGVFEMSQ 392 (583)
Q Consensus 373 ~i~KnR~g~~~ei~~f~It~ 392 (583)
.+.|||+|+++.+...+..+
T Consensus 415 ~i~K~R~G~~g~v~l~f~~~ 434 (454)
T 2r6a_A 415 IIAKQRNGPVGTVQLAFIKE 434 (454)
T ss_dssp EEEEESSSCCEEEEEEEETT
T ss_pred EEecccCCCCeEEEEEEEcC
Confidence 99999999988765544333
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.91 E-value=4.8e-24 Score=259.08 Aligned_cols=217 Identities=20% Similarity=0.250 Sum_probs=175.6
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.++.++... ...|++| |+ .+||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+||+
T Consensus 699 ~~~l~~~~~~---~~~~i~T-G~--~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-----g~~VlyiS 767 (1706)
T 3cmw_A 699 IMRLGEDRSM---DVETIST-GS--LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFID 767 (1706)
T ss_dssp SEEGGGCGGG---SCCEECC-SC--HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEC
T ss_pred cccccccccc---ccccccc-Cc--HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHc-----CCCeEEEe
Confidence 3455555432 2468888 88 99999999 999999999999999999999999999999874 67899999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc----ccCCCEEEEccchhhhh-hcccCCCCC------HHHHH
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ----PLSPRALIIDSIQTVYL-RGVAGSAGG------LMQVK 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~----~~~p~lVVIDsi~~l~~-~~~~~~~g~------~~qvr 316 (583)
+|++.+++. +++++++.+++++.++.+++++++.++ ..+|++|||||++.++. ....+.+++ ..++.
T Consensus 768 ~Ees~~ql~--A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis 845 (1706)
T 3cmw_A 768 AEHALDPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 845 (1706)
T ss_dssp TTSCCCHHH--HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred ccchHHHHH--HHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHH
Confidence 999999985 788999999998888888888777765 57899999999999872 333333333 22345
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCc-cCc-------CCccchheeccEEEEEeCcee--------ceeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKS-GDI-------AGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~-g~~-------ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g 380 (583)
+++..|+.+|+++|++||+++|+++. +.. .+++.++|++|.|++|++++. ...|.+++.|||+|
T Consensus 846 ~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~g 925 (1706)
T 3cmw_A 846 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 925 (1706)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEecccccccccccCcEEEEEEEecCCC
Confidence 56777888899999999999999876 332 347899999999999976542 23788999999999
Q ss_pred Cccccceeec-ccCCeEEe
Q 007957 381 STDELGVFEM-SQLGLQAV 398 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~v 398 (583)
++++...|.| .+.|+...
T Consensus 926 p~~~~~~F~I~~~~Gi~~~ 944 (1706)
T 3cmw_A 926 APFKQAEFQILYGEGINFY 944 (1706)
T ss_dssp CSCCEEEEEEETTTEECHH
T ss_pred CCCceEEEEEEcCCCcccc
Confidence 9999999999 77787643
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.91 E-value=1.7e-23 Score=204.76 Aligned_cols=199 Identities=22% Similarity=0.328 Sum_probs=152.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM 263 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~ 263 (583)
++++| |+ +.||++++||+++|++++|.|+||+|||||+++++..+... +++|+|++.+++.+++..++..++
T Consensus 3 ~~i~t-g~--~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 3 SRLST-GI--LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-----GDPCIYVTTEESRDSIIRQAKQFN 74 (235)
T ss_dssp CEECC-SC--HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-----TCCEEEEESSSCHHHHHHHHHHTT
T ss_pred ccccC-Cc--hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEcccCHHHHHHHHHHhc
Confidence 47777 88 99999999999999999999999999999999999888765 568999999999998888877776
Q ss_pred ccccccc-----c-------------CCcccHHH----HHHHhcccCCC--EEEEccchhhhhhcccCCCCCHHHHHHHH
Q 007957 264 IATEELF-----L-------------YSSTDIED----IVEKVQPLSPR--ALIIDSIQTVYLRGVAGSAGGLMQVKECT 319 (583)
Q Consensus 264 i~~~~i~-----i-------------~~~~~~e~----i~~~i~~~~p~--lVVIDsi~~l~~~~~~~~~g~~~qvrei~ 319 (583)
+....+. + ....+..+ +.+.+...+|+ +|||||+++++.. +....++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-------d~~~~~~~~ 147 (235)
T 2w0m_A 75 WDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-------KPAMARKIS 147 (235)
T ss_dssp CCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-------CGGGHHHHH
T ss_pred chHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-------CHHHHHHHH
Confidence 5543221 1 11113333 34445556899 9999999987521 334567889
Q ss_pred HHHHHHHHcCCCcEEEecccCCc--cCcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccC-
Q 007957 320 SALLRFAKKTNIPVLLAGHVTKS--GDIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQL- 393 (583)
Q Consensus 320 ~~L~~lAk~~g~tVIlisH~~k~--g~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~- 393 (583)
..|++++++.|++||+++|..+. +.. + ..++++||.|+.|++... ...|.+++.|+|++++. ....|.+++.
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~-~-~~~~~~~d~vi~l~~~~~~~~~~r~l~v~K~r~~~~~~~~~~f~i~~~~ 225 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAF-G-FGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGK 225 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-------------CHHHHCSEEEEEEEEEETTEEEEEEEEEEETTCCCCCSCEEEEEETTT
T ss_pred HHHHHHHHhCCCeEEEEeccCccccccc-c-cchheeeeEEEEEEEEecCCcEEEEEEEEeccCCcccceeEEEEEcCCC
Confidence 99999999999999999999842 111 1 458999999999987543 24689999999998876 6889999999
Q ss_pred CeEEec
Q 007957 394 GLQAVS 399 (583)
Q Consensus 394 GL~~v~ 399 (583)
|+..+.
T Consensus 226 Gi~~~~ 231 (235)
T 2w0m_A 226 GIVLKG 231 (235)
T ss_dssp EEEEEE
T ss_pred CeEEec
Confidence 998765
No 26
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.90 E-value=2e-23 Score=220.31 Aligned_cols=218 Identities=20% Similarity=0.252 Sum_probs=163.8
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.++.++... ...+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+|++
T Consensus 30 ~~~l~~~~~~---~~~~i~T-G~--~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-----g~~vlyid 98 (356)
T 1u94_A 30 IMRLGEDRSM---DVETIST-GS--LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFID 98 (356)
T ss_dssp SCCTTCCCBC---CCCEECC-SC--HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred ceEccccccc---cCCcccC-CC--HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEe
Confidence 3456555422 2468888 88 99999999 999999999999999999999999999998874 67899999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHh----cccCCCEEEEccchhhhh-hcccCCCCCH------HHHH
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV----QPLSPRALIIDSIQTVYL-RGVAGSAGGL------MQVK 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~-~~~~~~~g~~------~qvr 316 (583)
+|++.++. ++.+++++.+++++....+.+++.+.+ ...++++||||+++.++. ....+..++. ..+.
T Consensus 99 ~E~s~~~~--~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~ 176 (356)
T 1u94_A 99 AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 176 (356)
T ss_dssp SSCCCCHH--HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHH
T ss_pred CCCCccHH--HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHH
Confidence 99988765 367788888888877666666555443 346899999999999873 3333322221 2356
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCc-c-------CcCCccchheeccEEEEEeCcee--------ceeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKS-G-------DIAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~-g-------~~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g 380 (583)
++++.|..++++++++||+++|+++. + ...|...++|++|.++.+++.+. ...+.+++.|||.+
T Consensus 177 ~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~ 256 (356)
T 1u94_A 177 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 256 (356)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSB
T ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCccC
Confidence 77888899999999999999999865 1 12345689999999999987542 24678999999999
Q ss_pred Cccccceeec-ccCCeEEec
Q 007957 381 STDELGVFEM-SQLGLQAVS 399 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~v~ 399 (583)
|+.....|.+ .+.|+....
T Consensus 257 p~~~~~~f~i~~~~Gi~~~~ 276 (356)
T 1u94_A 257 APFKQAEFQILYGEGINFYG 276 (356)
T ss_dssp CSCCEEEEEEETTTEECHHH
T ss_pred CCCCcEEEEEEcCCCcCcCc
Confidence 9777778887 577876443
No 27
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.90 E-value=2.3e-23 Score=220.57 Aligned_cols=207 Identities=18% Similarity=0.267 Sum_probs=160.1
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+||+.|++.+++ ++.+
T Consensus 52 ~~~i~T-G~--~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-----g~~vlyi~~E~s~~~~--~a~~ 121 (366)
T 1xp8_A 52 VQVVST-GS--LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-----GGTCAFIDAEHALDPV--YARA 121 (366)
T ss_dssp CCEECC-SC--HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSCCCCHH--HHHH
T ss_pred CceecC-CC--HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-----CCeEEEEECCCChhHH--HHHH
Confidence 458887 88 99999999 999999999999999999999999999998864 6789999999998877 4678
Q ss_pred ccccccccccCCcccHHHHHHHh----cccCCCEEEEccchhhhh-hcccCCCCC------HHHHHHHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVEKV----QPLSPRALIIDSIQTVYL-RGVAGSAGG------LMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~-~~~~~~~g~------~~qvrei~~~L~~lAk~~g 330 (583)
++++.+++++....+.+++++.+ ...++++||||+++.++. ....+..++ ...+.++++.|..++++++
T Consensus 122 ~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~ 201 (366)
T 1xp8_A 122 LGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTG 201 (366)
T ss_dssp TTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888877766666655544 346799999999998863 232222222 1235677888888899999
Q ss_pred CcEEEecccCCcc-----C---cCCccchheeccEEEEEeCcee---------ceeeeEEEEecccCCccccceeecc-c
Q 007957 331 IPVLLAGHVTKSG-----D---IAGPRVLEHIVDAVLYMEGEKF---------SSYRLLRSVKNRFGSTDELGVFEMS-Q 392 (583)
Q Consensus 331 ~tVIlisH~~k~g-----~---~ag~~~Le~~aD~Vl~Le~~~~---------~~~R~L~i~KnR~g~~~ei~~f~It-~ 392 (583)
++||+++|+++.. + ..|+..++|++|.+++|++... ...+.+.+.|||++++.....|.+. +
T Consensus 202 ~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~ 281 (366)
T 1xp8_A 202 TAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYG 281 (366)
T ss_dssp CEEEEEEEC---------------CHHHHHHHCSEEEEEEEESCCC------CEEEEEEEEEEESSSCCCCEEEEEEETT
T ss_pred CEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecchhcccCccccCCEEEEEEEcCCCCCCCceEEEEEEeC
Confidence 9999999997631 1 2466789999999999986542 2468899999999998777788887 6
Q ss_pred CCeEEec
Q 007957 393 LGLQAVS 399 (583)
Q Consensus 393 ~GL~~v~ 399 (583)
.|+....
T Consensus 282 ~Gi~~~~ 288 (366)
T 1xp8_A 282 KGFDQLS 288 (366)
T ss_dssp TEECHHH
T ss_pred CCcccch
Confidence 7776544
No 28
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.90 E-value=2.1e-23 Score=214.52 Aligned_cols=206 Identities=15% Similarity=0.207 Sum_probs=147.1
Q ss_pred cccccCCCChhhhhHHhc----CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLG----GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRA 259 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLg----GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~ 259 (583)
.|++| |+ ++||++|+ ||+++| +++|+|+||+|||||++|++..+++.. .+++|+|+++|++..+. |+
T Consensus 5 ~risT-Gi--~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g---~g~~vlyId~E~s~~~~--ra 75 (333)
T 3io5_A 5 DVVRT-KI--PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY---PDAVCLFYDSEFGITPA--YL 75 (333)
T ss_dssp -CBCC-SC--HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC---TTCEEEEEESSCCCCHH--HH
T ss_pred CEecC-CC--HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC---CCceEEEEeccchhhHH--HH
Confidence 58888 88 99999999 999999 999999999999999999999988641 25689999999998764 78
Q ss_pred HhccccccccccCCcccHHHH-HHH------hcccCCCEEEEccchhhhh-hcccCCCCC-----HHHHHHHHH---HHH
Q 007957 260 DRMMIATEELFLYSSTDIEDI-VEK------VQPLSPRALIIDSIQTVYL-RGVAGSAGG-----LMQVKECTS---ALL 323 (583)
Q Consensus 260 ~rl~i~~~~i~i~~~~~~e~i-~~~------i~~~~p~lVVIDsi~~l~~-~~~~~~~g~-----~~qvrei~~---~L~ 323 (583)
++++++.+++++..+++.+++ ++. ++..+|++|||||+++++. .++++.+++ ..|.|.+.. .|.
T Consensus 76 ~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~ 155 (333)
T 3io5_A 76 RSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVT 155 (333)
T ss_dssp HHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHH
T ss_pred HHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHH
Confidence 999999999988888887777 543 4566899999999999984 555555443 246666544 456
Q ss_pred HHHHcCCCcEEEecccCCccC------cCCccchheeccEEEEEeCcee--------ceeeeEEEEecccCCccccceee
Q 007957 324 RFAKKTNIPVLLAGHVTKSGD------IAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFGSTDELGVFE 389 (583)
Q Consensus 324 ~lAk~~g~tVIlisH~~k~g~------~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g~~~ei~~f~ 389 (583)
.+|+++|+++|+++|+++.|. ..|...+ |.+...|.|.+... .....+.+.|+|.-+.....+|.
T Consensus 156 ~~ak~~~i~vi~tNQV~k~G~~fg~p~~~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~ 234 (333)
T 3io5_A 156 PYFSTKNIPCIAINHTYETQEMFSKTVMGGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFID 234 (333)
T ss_dssp HHHHHTTCEEEEEEEC---------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECSSBCTTCEEEEE
T ss_pred HHHHHhCCEEEEECCeeecCcccCCCCCCCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEEEccCCcCCcEE
Confidence 689999999999999988543 2467788 88888888864221 12234566788876555445566
Q ss_pred cc-cCCeEEec
Q 007957 390 MS-QLGLQAVS 399 (583)
Q Consensus 390 It-~~GL~~v~ 399 (583)
+. +.|+....
T Consensus 235 i~~~~Gi~~~~ 245 (333)
T 3io5_A 235 VKFDGGIDPYS 245 (333)
T ss_dssp BCTTSCBCTTT
T ss_pred EEecCCCChHH
Confidence 65 57765444
No 29
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.90 E-value=7.8e-23 Score=209.72 Aligned_cols=212 Identities=22% Similarity=0.304 Sum_probs=148.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc-
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM- 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl- 262 (583)
..++|.|+ ..||.++ +|+++|++++|+|+||+|||||++++++.++.. .+.+|+|++.|++..++..|+...
T Consensus 15 ~~i~t~g~--~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~----~G~~v~~~~~e~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 15 VGLLFSGC--TGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA----MGKKVGLAMLEESVEETAEDLIGLH 87 (296)
T ss_dssp CCBCCCSC--TTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT----SCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCcccCCH--HHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH----cCCeEEEEeCcCCHHHHHHHHHHHH
Confidence 35554366 8899999 899999999999999999999999999999874 245899999999988877664221
Q ss_pred -cccc--------------------------cccccCC---cccHHHHHHHh----cccCCCEEEEccchhhhhhcccCC
Q 007957 263 -MIAT--------------------------EELFLYS---STDIEDIVEKV----QPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 263 -~i~~--------------------------~~i~i~~---~~~~e~i~~~i----~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
+.+. ..+++.+ ..+..++.+.+ ...+|++||||+++.+.... ..
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~--~~ 165 (296)
T 1cr0_A 88 NRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS--GE 165 (296)
T ss_dssp TTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC----------
T ss_pred cCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC--CC
Confidence 1110 1122221 13344433333 56689999999999875321 00
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC-c-------------cCcCCccchheeccEEEEEeCceec---eeee
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK-S-------------GDIAGPRVLEHIVDAVLYMEGEKFS---SYRL 371 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k-~-------------g~~ag~~~Le~~aD~Vl~Le~~~~~---~~R~ 371 (583)
.....++.++++.|+++++++|++||+++|.++ + ++++|++.++++||.|++|++++.. ..+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~~~~~~~ 245 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVL 245 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-------CEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccCCCCeEE
Confidence 112267788999999999999999999999973 2 4788899999999999999876643 4689
Q ss_pred EEEEeccc-CCcccc--ceeecccCCeEEecCCCcc
Q 007957 372 LRSVKNRF-GSTDEL--GVFEMSQLGLQAVSNPSKI 404 (583)
Q Consensus 372 L~i~KnR~-g~~~ei--~~f~It~~GL~~v~~ps~i 404 (583)
+.+.|+|+ |+++.+ ..|.+...++..+.+|+..
T Consensus 246 l~i~K~R~~g~~g~~~~~~f~~~~~~f~~~~~~~~~ 281 (296)
T 1cr0_A 246 VRILKCRFTGDTGIAGYMEYNKETGWLEPSSYSGEE 281 (296)
T ss_dssp EEEEEETTTCCCEEEEEEEECTTTCCEEECCC----
T ss_pred EEEEccccCCCCCceEEEEEEcCccEEecCCCCccc
Confidence 99999995 998874 5677888999999988764
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.89 E-value=6.9e-23 Score=215.89 Aligned_cols=208 Identities=22% Similarity=0.375 Sum_probs=155.5
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCccC--HHHHHHHH
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEES--VEQIGNRA 259 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ees--~~qi~~R~ 259 (583)
..|++| |+ ++||++|+||+++|++++|.|+||+|||||+++++..++.... ++.+++|+|+++|+. ++++...+
T Consensus 110 ~~~isT-G~--~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~ 186 (349)
T 1pzn_A 110 IGRIST-GS--KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 186 (349)
T ss_dssp CCEECC-SC--HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCeecC-CC--HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHH
Confidence 468887 88 9999999999999999999999999999999999998742100 011357899999986 57777777
Q ss_pred Hhccccc----cccccCCc---cc----HHHHHHHhcc-----cCCCEEEEccchhhhhhcccCCCCCH----HHHHHHH
Q 007957 260 DRMMIAT----EELFLYSS---TD----IEDIVEKVQP-----LSPRALIIDSIQTVYLRGVAGSAGGL----MQVKECT 319 (583)
Q Consensus 260 ~rl~i~~----~~i~i~~~---~~----~e~i~~~i~~-----~~p~lVVIDsi~~l~~~~~~~~~g~~----~qvrei~ 319 (583)
++++++. +++.+... .. ++.+...+.. .+|++|||||+++++.....+. ++. ..+++++
T Consensus 187 q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l 265 (349)
T 1pzn_A 187 QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHL 265 (349)
T ss_dssp HTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHH
T ss_pred HHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHH
Confidence 7777654 33333322 11 2223333444 5899999999999886544332 232 2378889
Q ss_pred HHHHHHHHcCCCcEEEecccCCccC--------cCCccchheeccEEEEEeCceeceeeeEEEEecccCCccccceeecc
Q 007957 320 SALLRFAKKTNIPVLLAGHVTKSGD--------IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMS 391 (583)
Q Consensus 320 ~~L~~lAk~~g~tVIlisH~~k~g~--------~ag~~~Le~~aD~Vl~Le~~~~~~~R~L~i~KnR~g~~~ei~~f~It 391 (583)
..|.+++++++++||+++|+....+ +.+...++|.+|.+++|++++. ..|.+++.|+|+++.++ ..|.|+
T Consensus 266 ~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~l~~~~~-~~Ri~k~~ks~~~~~~~-~~f~It 343 (349)
T 1pzn_A 266 ADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKG-GKRIARLIDAPHLPEGE-AVFSIT 343 (349)
T ss_dssp HHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEEEEECTT-SEEEEEESCSSSSCCSE-EEEEEE
T ss_pred HHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEEEEEcCC-CeEEEEEEeCCCCCCeE-EEEEEc
Confidence 9999999999999999999986533 3678899999999999987543 57889999999988776 799999
Q ss_pred cCCeE
Q 007957 392 QLGLQ 396 (583)
Q Consensus 392 ~~GL~ 396 (583)
+.|+.
T Consensus 344 ~~Gi~ 348 (349)
T 1pzn_A 344 EKGIE 348 (349)
T ss_dssp TTEEE
T ss_pred CCCCC
Confidence 99985
No 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=1.3e-22 Score=224.76 Aligned_cols=205 Identities=19% Similarity=0.267 Sum_probs=163.5
Q ss_pred ccccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
..|+++ |+ ++||++|+||+++|++++|.|+||+|||||++++++..... +.+++|+++|++..++..++.++
T Consensus 260 ~~~l~~-g~--~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-----G~~vi~~~~ee~~~~l~~~~~~~ 331 (525)
T 1tf7_A 260 NVRVSS-GV--VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-----KERAILFAYEESRAQLLRNAYSW 331 (525)
T ss_dssp CCEECC-SC--HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-----TCCEEEEESSSCHHHHHHHHHTT
T ss_pred cceeec-Ch--HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-----CCCEEEEEEeCCHHHHHHHHHHc
Confidence 357776 77 89999999999999999999999999999999999988763 56899999999999999988877
Q ss_pred cccccc------cccC-------Ccc-cHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 263 MIATEE------LFLY-------SST-DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 263 ~i~~~~------i~i~-------~~~-~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
+++.+. +.+. +.. ....++..+...+|++||||+++.+.. . . ...+.++.+..|.+.+++
T Consensus 332 g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~-~---~--~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 332 GMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALAR-G---V--SNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp SCCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTS-S---S--CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHh-h---C--ChHHHHHHHHHHHHHHHh
Confidence 765221 1111 111 234456666778999999996655432 1 1 225577888888888888
Q ss_pred CCCcEEEecccC-CccCcCCc-cchheeccEEEEEeCcee--ceeeeEEEEecccCCc-cccceeecccCCeEEecCCC
Q 007957 329 TNIPVLLAGHVT-KSGDIAGP-RVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGST-DELGVFEMSQLGLQAVSNPS 402 (583)
Q Consensus 329 ~g~tVIlisH~~-k~g~~ag~-~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~-~ei~~f~It~~GL~~v~~ps 402 (583)
.|++||+++|.. +.+.++++ ..++++||+|+.|+.++. ...|.++++|+|++++ .++..|.|++.|+. +.+|.
T Consensus 406 ~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~-v~~~~ 483 (525)
T 1tf7_A 406 EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPD-IKDSF 483 (525)
T ss_dssp TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEEETTEEEEEEEEEEESSSCCCCBCEEEEECSSCEE-EEEEC
T ss_pred CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEEeCCEEEEEEEEEECCCCCCCCCEEEEEEcCCCEE-Eeccc
Confidence 899999999997 66777777 789999999999976543 4578999999999999 68999999999999 66664
No 32
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.89 E-value=6e-23 Score=249.54 Aligned_cols=216 Identities=20% Similarity=0.256 Sum_probs=171.3
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.+|.++.. ....+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+||+
T Consensus 350 ~~~l~~~~~---~~~~~isT-Gi--~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-----G~~vlyis 418 (1706)
T 3cmw_A 350 IMRLGEDRS---MDVETIST-GS--LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFID 418 (1706)
T ss_dssp SEEGGGCGG---GSCCEECC-SC--HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEC
T ss_pred ceecccccc---ccCceecc-Cc--HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEE
Confidence 345555432 12468888 88 99999999 999999999999999999999999999998874 67999999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc----ccCCCEEEEccchhhhh-hcccCCCCC------HHHHH
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ----PLSPRALIIDSIQTVYL-RGVAGSAGG------LMQVK 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~----~~~p~lVVIDsi~~l~~-~~~~~~~g~------~~qvr 316 (583)
+|++.+++ ++.+++++.+++++..+.+.+++++.+. ..++++|||||++.++. .+.++..++ ...+.
T Consensus 419 ~E~s~~~~--~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s 496 (1706)
T 3cmw_A 419 AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 496 (1706)
T ss_dssp TTSCCCHH--HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred ccCchHHH--HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHH
Confidence 99999987 4788999999998887777777665543 56899999999999874 333333332 22345
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCc-cC-------cCCccchheeccEEEEEeCcee--------ceeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKS-GD-------IAGPRVLEHIVDAVLYMEGEKF--------SSYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~-g~-------~ag~~~Le~~aD~Vl~Le~~~~--------~~~R~L~i~KnR~g 380 (583)
+.++.|..+++++|++||+++|+++. +. ..|+..++|+||.|+++++.+. ...+.++++|||++
T Consensus 497 ~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~g 576 (1706)
T 3cmw_A 497 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 576 (1706)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecCCC
Confidence 67778888899999999999999875 21 2577899999999999987542 23467999999999
Q ss_pred Cccccceeec-ccCCeEE
Q 007957 381 STDELGVFEM-SQLGLQA 397 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~ 397 (583)
+++....|.| .+.|+..
T Consensus 577 p~~~~~~F~I~~~~Gi~~ 594 (1706)
T 3cmw_A 577 APFKQAEFQILYGEGINF 594 (1706)
T ss_dssp CSCCEEEEEEETTTEECH
T ss_pred CCCCeEEEEEecCCCccc
Confidence 9998888884 5666654
No 33
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.89 E-value=7e-23 Score=251.06 Aligned_cols=217 Identities=20% Similarity=0.248 Sum_probs=171.7
Q ss_pred ceecccccccccccccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 169 ~~~l~~v~~~~~~~~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+.+|.++... ...+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+||+
T Consensus 350 ~~~l~~~~~~---~~~~I~T-G~--~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~-----G~~vlyis 418 (2050)
T 3cmu_A 350 IMRLGEDRSM---DVETIST-GS--LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFID 418 (2050)
T ss_dssp EEEGGGCTTT---SCCEECC-SC--HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEC
T ss_pred ceeccccccc---CCceeeC-CC--HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCeEEEEE
Confidence 3455554321 2468888 88 99999999 999999999999999999999999999999874 67899999
Q ss_pred CccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc----ccCCCEEEEccchhhhh-hcccCCCCCH---HHH---H
Q 007957 248 GEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ----PLSPRALIIDSIQTVYL-RGVAGSAGGL---MQV---K 316 (583)
Q Consensus 248 ~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~----~~~p~lVVIDsi~~l~~-~~~~~~~g~~---~qv---r 316 (583)
+|++.+++. +++++++.+++++.++.+++++++.++ ..++++|||||++.++. .+..+..++. .+. .
T Consensus 419 ~E~s~~~~~--a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is 496 (2050)
T 3cmu_A 419 AEHALDPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 496 (2050)
T ss_dssp TTSCCCHHH--HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred cCCCHHHHH--HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHH
Confidence 999999874 778999999999888888887776665 56899999999999873 3333333331 343 4
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCc-cC-------cCCccchheeccEEEEEeCceec--------eeeeEEEEecccC
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKS-GD-------IAGPRVLEHIVDAVLYMEGEKFS--------SYRLLRSVKNRFG 380 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~-g~-------~ag~~~Le~~aD~Vl~Le~~~~~--------~~R~L~i~KnR~g 380 (583)
..++.|..+|++++++||+++|+++. +. .+|+..++|+||.+++|++.... ..+.+++.|||+|
T Consensus 497 ~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~g 576 (2050)
T 3cmu_A 497 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 576 (2050)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecCCC
Confidence 55666666799999999999999865 21 35778999999999999876431 2457999999999
Q ss_pred Cccccceeec-ccCCeEEe
Q 007957 381 STDELGVFEM-SQLGLQAV 398 (583)
Q Consensus 381 ~~~ei~~f~I-t~~GL~~v 398 (583)
++++...|.+ .+.|+...
T Consensus 577 p~g~~~~f~I~~~~Gi~~~ 595 (2050)
T 3cmu_A 577 APFKQAEFQILYGEGINFY 595 (2050)
T ss_dssp CSCCEEEEEEETTTEECHH
T ss_pred CCCceEEEEEEeCCCcccc
Confidence 9998888995 56776643
No 34
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.89 E-value=4e-22 Score=197.65 Aligned_cols=202 Identities=20% Similarity=0.283 Sum_probs=149.0
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHh-hhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA-DVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la-~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
.|++| |+ +.||++++||+++|++++|.|+||+|||||+++++.... .. +.+++|+++++...++..++..+
T Consensus 10 ~~i~t-g~--~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T 2ehv_A 10 RRVKS-GI--PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-----GEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp CEECC-SC--TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCHHHHHHHHHTT
T ss_pred ceeec-CC--HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEEccCCHHHHHHHHHHc
Confidence 57787 88 999999999999999999999999999999999996544 32 56799999999999888888777
Q ss_pred ccccccc------cc------------------CCcccHH----HHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHH
Q 007957 263 MIATEEL------FL------------------YSSTDIE----DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314 (583)
Q Consensus 263 ~i~~~~i------~i------------------~~~~~~e----~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q 314 (583)
++..++. .+ ....+++ .+...+...+|+++++|+++++.... .+...
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~-----~d~~~ 156 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL-----EEERK 156 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS-----SSGGG
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc-----CCHHH
Confidence 7654331 11 1112233 33444556789999999999886421 13344
Q ss_pred HHHHHHHHHHHHHcCCCcEEEecccCCcc--CcCCccchheec-cEEEEEeCce--eceeeeEEEEecccCCcc-cccee
Q 007957 315 VKECTSALLRFAKKTNIPVLLAGHVTKSG--DIAGPRVLEHIV-DAVLYMEGEK--FSSYRLLRSVKNRFGSTD-ELGVF 388 (583)
Q Consensus 315 vrei~~~L~~lAk~~g~tVIlisH~~k~g--~~ag~~~Le~~a-D~Vl~Le~~~--~~~~R~L~i~KnR~g~~~-ei~~f 388 (583)
.++.+..|.+.+++.|+|||+++|..++. ...+ ..++++| |.|++|+... ....|.+++.|+|++++. ....|
T Consensus 157 ~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~-~~i~~~~aD~vi~l~~~~~~~~~~r~l~i~K~r~~~~~~~~~~~ 235 (251)
T 2ehv_A 157 IREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSR-YGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPF 235 (251)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCC----CCSSS-SSCGGGGCSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccc-cChhhEeeeEEEEEeeeccCCeeEEEEEEEEccCCCcCCceEEE
Confidence 55655556555566799999999998764 2333 3357888 9999997533 245688999999988775 67899
Q ss_pred ecccCCeEEec
Q 007957 389 EMSQLGLQAVS 399 (583)
Q Consensus 389 ~It~~GL~~v~ 399 (583)
.+++.|+..++
T Consensus 236 ~i~~~Gi~v~~ 246 (251)
T 2ehv_A 236 EIGPNGIVVYP 246 (251)
T ss_dssp EEETTEEEECC
T ss_pred EECCCCeEEcC
Confidence 99999998775
No 35
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.84 E-value=9.2e-21 Score=232.49 Aligned_cols=204 Identities=20% Similarity=0.267 Sum_probs=164.5
Q ss_pred ccccccCCCChhhhhHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 183 DWRIPLSGLFGNEVARVLG-GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 183 ~~Ri~t~Gi~~~eLD~vLg-GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
..+++| |+ ++||++|+ ||+++|++++|+|+||+|||||+++++..++.. +.+|+|||+|++.+++. +.+
T Consensus 710 ~~~i~T-G~--~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~-----g~~VlyiS~Ees~~ql~--A~r 779 (2050)
T 3cmu_A 710 VETIST-GS--LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPIY--ARK 779 (2050)
T ss_dssp CCEECC-SC--HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTTSCCCHHH--HHH
T ss_pred cceeec-CC--hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEECCCcHHHHH--HHH
Confidence 468888 88 99999998 799999999999999999999999999999874 56899999999999986 678
Q ss_pred ccccccccccCCcccHHHHHHHhcc----cCCCEEEEccchhhhh-hcccCCCCC------HHHHHHHHHHHHHHHHcCC
Q 007957 262 MMIATEELFLYSSTDIEDIVEKVQP----LSPRALIIDSIQTVYL-RGVAGSAGG------LMQVKECTSALLRFAKKTN 330 (583)
Q Consensus 262 l~i~~~~i~i~~~~~~e~i~~~i~~----~~p~lVVIDsi~~l~~-~~~~~~~g~------~~qvrei~~~L~~lAk~~g 330 (583)
++++.+++++.++.+++++.+.++. .+|++|||||+|+++. ....+.+++ ..++.++++.|+.+|++++
T Consensus 780 lG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~ 859 (2050)
T 3cmu_A 780 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 859 (2050)
T ss_dssp TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 8998889998888888887777655 6899999999999986 433333332 2246667779999999999
Q ss_pred CcEEEecccCCccC--------cCCccchheeccEEEEEeCcee---------ceeeeEEEEecccCCccccceeec-cc
Q 007957 331 IPVLLAGHVTKSGD--------IAGPRVLEHIVDAVLYMEGEKF---------SSYRLLRSVKNRFGSTDELGVFEM-SQ 392 (583)
Q Consensus 331 ~tVIlisH~~k~g~--------~ag~~~Le~~aD~Vl~Le~~~~---------~~~R~L~i~KnR~g~~~ei~~f~I-t~ 392 (583)
++||+++|+++.-+ ..|+..+.|.+++.++|.+... ...| +..+|+...++.....|.| ++
T Consensus 860 v~VI~l~Qv~r~~e~~fgdp~~p~GG~~l~h~a~~Rl~Lrr~~~~~~g~~~~G~~~R-v~~v~~sp~lp~~e~~f~I~~~ 938 (2050)
T 3cmu_A 860 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR-VKVVKNKIAAPFKQAEFQILYG 938 (2050)
T ss_dssp CEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEE-EEEEEESSSCSCCEEEEEEETT
T ss_pred CEEEEeccccccchhhcCCCccccCCceeeeeeeEEEEEEeeccccccccccCCcce-EEEEecCCCCCCceEEEEEEcC
Confidence 99999999997632 2577899999999999986511 1344 4456666565656677888 88
Q ss_pred CCeEE
Q 007957 393 LGLQA 397 (583)
Q Consensus 393 ~GL~~ 397 (583)
.|+..
T Consensus 939 ~Gi~~ 943 (2050)
T 3cmu_A 939 EGINF 943 (2050)
T ss_dssp TEECH
T ss_pred CCccc
Confidence 88774
No 36
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.84 E-value=2e-20 Score=190.33 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=143.2
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-----CCCCccEEEEeCccCHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-----LGEPSPVVYVSGEESVEQIGNR 258 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-----~~~~~~VLyis~Ees~~qi~~R 258 (583)
.+++| |+ ++||.++ ||+++|++++|.|+||+|||||+++++..++.+.. ...+.+++|++.|++..++..|
T Consensus 11 ~~i~t-g~--~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r 86 (279)
T 1nlf_A 11 EAFAA-AP--PPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 86 (279)
T ss_dssp HHHHS-CC--CCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHH
T ss_pred HHhcC-CC--CChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHH
Confidence 57777 88 8999999 59999999999999999999999999997764210 0013579999999999888777
Q ss_pred HHhccccc---------ccccc----------CCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHH
Q 007957 259 ADRMMIAT---------EELFL----------YSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECT 319 (583)
Q Consensus 259 ~~rl~i~~---------~~i~i----------~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~ 319 (583)
+..++.+. +.+.+ ++...++.+...+. +|++|||||++.++.. +++....+++++
T Consensus 87 ~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~--~~~livlDe~~~~~~~----d~~~~~~~~~~~ 160 (279)
T 1nlf_A 87 LHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE--GRRLMVLDTLRRFHIE----EENASGPMAQVI 160 (279)
T ss_dssp HHHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHT--TCSEEEEECGGGGCCS----CTTCHHHHHHHH
T ss_pred HHHHHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcC--CCCEEEECCHHHhcCC----CcCchHHHHHHH
Confidence 76655432 12222 22233455544443 6999999999986521 334566788999
Q ss_pred HHHHHHHHcCCCcEEEecccCCccC----------cCCccchheeccEEEEEeCcee---------c----eeeeEEEEe
Q 007957 320 SALLRFAKKTNIPVLLAGHVTKSGD----------IAGPRVLEHIVDAVLYMEGEKF---------S----SYRLLRSVK 376 (583)
Q Consensus 320 ~~L~~lAk~~g~tVIlisH~~k~g~----------~ag~~~Le~~aD~Vl~Le~~~~---------~----~~R~L~i~K 376 (583)
+.|.+++++.|++||+++|..+... ..|+..+.+.++.+.+++.... . .+-.+.+.|
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~~~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~v~K 240 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSK 240 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEecCCCcccccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEEeeecc
Confidence 9999999999999999999987642 2455666655555555553321 1 123477899
Q ss_pred cccCCccccceeecccCCeEEe
Q 007957 377 NRFGSTDELGVFEMSQLGLQAV 398 (583)
Q Consensus 377 nR~g~~~ei~~f~It~~GL~~v 398 (583)
||+|+++....|++.+.|+...
T Consensus 241 ~~~~~~~~~~~~~~~~~G~l~~ 262 (279)
T 1nlf_A 241 ANYGAPFADRWFRRHDGGVLKP 262 (279)
T ss_dssp CSSSSCCCCEEEEECGGGCEEE
T ss_pred ccCCCCCCceEEEEcCCeeEec
Confidence 9999999877888888887654
No 37
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.72 E-value=6.4e-17 Score=163.10 Aligned_cols=192 Identities=12% Similarity=-0.021 Sum_probs=128.6
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI 264 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i 264 (583)
+++| || ++||++|+||+++|++++|.|.||+|||||++|++...+.. |.+++|++.|+++.++..++..+|+
T Consensus 2 ~i~t-Gi--~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-----Ge~~~~~~~~e~~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 2 SLSW-EI--EELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-----DNLVGMFSISYPLQLIIRILSRFGV 73 (260)
T ss_dssp CBCC-SS--HHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-----TCEEEEEECSSCHHHHHHHHHHTTC
T ss_pred cCcc-Cc--HHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-----CCcEEEEEEeCCHHHHHHHHHHcCC
Confidence 4566 88 99999999999999999999999999999999999988874 7899999999999999999999998
Q ss_pred cccc------cccCC--------------------ccc-------HHHHHHH-------hcccCC-C-EEEEccchhhhh
Q 007957 265 ATEE------LFLYS--------------------STD-------IEDIVEK-------VQPLSP-R-ALIIDSIQTVYL 302 (583)
Q Consensus 265 ~~~~------i~i~~--------------------~~~-------~e~i~~~-------i~~~~p-~-lVVIDsi~~l~~ 302 (583)
+.+. +.+++ +.+ +.++.+. .+..++ + ++|||++..+..
T Consensus 74 dl~~~~~~g~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~ 153 (260)
T 3bs4_A 74 DVIKYLENHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLE 153 (260)
T ss_dssp CHHHHHHTTSEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGG
T ss_pred CHHHHhhCCcEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHH
Confidence 7532 22221 111 3344444 222454 4 347777766542
Q ss_pred hcccCCCCCHHHHHHHHHHHHHH------HHc-CCCcEEEecccCCccCcCCccchheeccEEEEEeCce--eceeeeEE
Q 007957 303 RGVAGSAGGLMQVKECTSALLRF------AKK-TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK--FSSYRLLR 373 (583)
Q Consensus 303 ~~~~~~~g~~~qvrei~~~L~~l------Ak~-~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~--~~~~R~L~ 373 (583)
. . .......+...+... .++ .+++.+++.+ .. .....+..+.++||.||.|+... ....|.|.
T Consensus 154 ~-~-----~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~-~~~~~~~~l~~laD~VI~lr~~e~~g~~rR~L~ 225 (260)
T 3bs4_A 154 V-F-----TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GV-KDKRVLLSVYRRADYVLKTRSSLGENGIKRELL 225 (260)
T ss_dssp T-S-----CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SC-SCHHHHHHHHHHCSEEEEEEEEEETTEEEEEEE
T ss_pred H-h-----ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CC-cccccccceEEEeeEEEEEEEEecCCceEEEEE
Confidence 1 1 334444444444443 333 6777777655 21 11122356788999999996532 23568999
Q ss_pred EEecccCCccc-cceeeccc
Q 007957 374 SVKNRFGSTDE-LGVFEMSQ 392 (583)
Q Consensus 374 i~KnR~g~~~e-i~~f~It~ 392 (583)
++|.|.+.+.. ...|.++.
T Consensus 226 V~K~Rg~~~~~~~re~~i~~ 245 (260)
T 3bs4_A 226 VIKTPKPIEELVRFEYEFKG 245 (260)
T ss_dssp EEECCC-----CEEEEEEET
T ss_pred EEECCCCCcCCceEEEEEec
Confidence 99999765542 33355554
No 38
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.62 E-value=5.7e-15 Score=163.49 Aligned_cols=200 Identities=24% Similarity=0.276 Sum_probs=135.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHH--HHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM--AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqi--a~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
.|+++ |+ ..||.+..||+++|++++|.|+||+|||||++++ ++.... +...+|++++++..++..++..
T Consensus 19 ~~~~~-g~--~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~------~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 19 AKMRT-MI--EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF------DEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp CEECC-CC--TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSSCHHHHHHHHGG
T ss_pred ccccC-Cc--hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC------CCCEEEEEEeCCHHHHHHHHHH
Confidence 46776 77 8999999999999999999999999999999995 455443 3469999999988877777777
Q ss_pred ccccccc------cccC------------CcccH----HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHH-HH
Q 007957 262 MMIATEE------LFLY------------SSTDI----EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK-EC 318 (583)
Q Consensus 262 l~i~~~~------i~i~------------~~~~~----e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr-ei 318 (583)
+++..++ +..+ ...++ +++...+...++++|+||++++++.. .+.+...+ ++
T Consensus 90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l 164 (525)
T 1tf7_A 90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRREL 164 (525)
T ss_dssp GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHH
T ss_pred cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHH
Confidence 7765432 2111 11122 33444455568999999999886532 12333344 44
Q ss_pred HHHHHHHHHcCCCcEEEecccCCcc-CcCCccchheeccEEEEEeCcee--ceeeeEEEEecccCCcc-ccceeecccCC
Q 007957 319 TSALLRFAKKTNIPVLLAGHVTKSG-DIAGPRVLEHIVDAVLYMEGEKF--SSYRLLRSVKNRFGSTD-ELGVFEMSQLG 394 (583)
Q Consensus 319 ~~~L~~lAk~~g~tVIlisH~~k~g-~~ag~~~Le~~aD~Vl~Le~~~~--~~~R~L~i~KnR~g~~~-ei~~f~It~~G 394 (583)
...+..+ ++.|+|||+++|...+- +......++++||.|++|+.+.. ...|.+.+.|.|..+.. ....|.+...|
T Consensus 165 ~~ll~~l-~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~~G~~~r~l~~~k~r~~~~~~~~~~~~i~~~g 243 (525)
T 1tf7_A 165 FRLVARL-KQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHG 243 (525)
T ss_dssp HHHHHHH-HHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECSTTCCEEEEEEEEETTSCCCCSEEEEEEETTE
T ss_pred HHHHHHH-HHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEccCCceeEEEEEEECCCCCCCCceEEEEEcCCC
Confidence 4444444 44699999999998541 11111124677999999986322 24578899999854432 34567777777
Q ss_pred eEEe
Q 007957 395 LQAV 398 (583)
Q Consensus 395 L~~v 398 (583)
+..+
T Consensus 244 i~v~ 247 (525)
T 1tf7_A 244 INIF 247 (525)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 39
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.34 E-value=5e-12 Score=128.60 Aligned_cols=140 Identities=22% Similarity=0.347 Sum_probs=93.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC---HHHHHHHHHhcccccccc--ccC------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES---VEQIGNRADRMMIATEEL--FLY------ 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees---~~qi~~R~~rl~i~~~~i--~i~------ 272 (583)
+.+|++++|.|+||+|||||+..+++.+... ...+++.++.. ..........+++-.++. .++
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~------~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e 104 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPS------SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ 104 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCS------EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC------CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH
Confidence 5889999999999999999999999887653 23556665542 222222223333322211 000
Q ss_pred -----------Cccc----HHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 273 -----------SSTD----IEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 273 -----------~~~~----~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
+... ++++++. +-..+|+++|+||+++.+ |
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~L---------D 175 (275)
T 3gfo_A 105 DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL---------D 175 (275)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTC---------C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccC---------C
Confidence 0000 1111211 112359999999999866 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.....+++..|.+++++.|.|||+++|.... ++.+||+|++|+.++.
T Consensus 176 ~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~--------~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDI--------VPLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEESCCSS--------GGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 6677788888888874449999999999866 8889999999998764
No 40
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.33 E-value=5.4e-13 Score=137.77 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=88.5
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC--ccCHHHHHHHHHhc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG--EESVEQIGNRADRM 262 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~--Ees~~qi~~R~~rl 262 (583)
.++| |+ ++||++| ||+++|.+++|.|+||+|||||+++++.. . +.+|+|++. +++ +
T Consensus 105 ~i~T-Gi--~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~--~------G~~VlyIs~~~eE~----------v 162 (331)
T 2vhj_A 105 ELVG-CS--PVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA--L------GGKDKYATVRFGEP----------L 162 (331)
T ss_dssp TCCS-BC--CEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH--H------HTTSCCEEEEBSCS----------S
T ss_pred cccc-Cc--HHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh--C------CCCEEEEEecchhh----------h
Confidence 4555 88 9999999 99999999999999999999999999876 3 457999998 444 1
Q ss_pred cccccccccCC-cccHHHHHHHhcccCCCEEEEccchhhhhhccc-CCCCC-HHHHHHHHHHHHHHHHcCCCcEEEeccc
Q 007957 263 MIATEELFLYS-STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVA-GSAGG-LMQVKECTSALLRFAKKTNIPVLLAGHV 339 (583)
Q Consensus 263 ~i~~~~i~i~~-~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~-~~~g~-~~qvrei~~~L~~lAk~~g~tVIlisH~ 339 (583)
... ..+ +..++.+.+.+.+.+ +||||+++.+...... +.++. ...+++++..|..++++.++++|++++.
T Consensus 163 ~~~-----~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 163 SGY-----NTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp TTC-----BCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred hhh-----hcCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 100 001 111233445555544 9999999987532211 11111 3458899999999999999999998764
Q ss_pred C
Q 007957 340 T 340 (583)
Q Consensus 340 ~ 340 (583)
.
T Consensus 236 ~ 236 (331)
T 2vhj_A 236 T 236 (331)
T ss_dssp S
T ss_pred c
Confidence 3
No 41
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.31 E-value=6.4e-12 Score=132.39 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=96.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCCc-----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYSS----- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~~----- 274 (583)
+.+|++++|.|+||+|||||++.+++...+. ..-+++.+++ +..++......+++-.++..++..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~------~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~e 124 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT------EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCS------EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCCCC------ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHH
Confidence 6899999999999999999999999887653 2345555543 233332222334433222111110
Q ss_pred -------------cc----HHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCC
Q 007957 275 -------------TD----IEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 275 -------------~~----~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
.. ++++++. .-..+|+++++||+++.+ |
T Consensus 125 nv~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~L---------D 195 (366)
T 3tui_C 125 NVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL---------D 195 (366)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTS---------C
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC---------C
Confidence 00 1122221 112359999999999876 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.....+++..|+++.++.|+|||+++|.... +..+||+|++|+.++.
T Consensus 196 ~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~--------~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 196 PATTRSILELLKDINRRLGLTILLITHEMDV--------VKRICDCVAVISNGEL 242 (366)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 6677888889999998899999999999754 8889999999998775
No 42
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.27 E-value=2e-11 Score=121.31 Aligned_cols=139 Identities=16% Similarity=0.263 Sum_probs=90.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHH-HHHhccccccccccC------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGN-RADRMMIATEELFLY------ 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~-R~~rl~i~~~~i~i~------ 272 (583)
+.+|++++|.|+||+|||||+..+++.+.+. ...+++.++. +..+... +...+++-.++..++
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~------~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 101 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT------EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL 101 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC------ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHH
Confidence 5789999999999999999999999887664 2345555432 2222221 112233221111000
Q ss_pred ---------------Ccc-c---HHHHHHH---------------------------hcccCCCEEEEccchhhhhhccc
Q 007957 273 ---------------SST-D---IEDIVEK---------------------------VQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 273 ---------------~~~-~---~e~i~~~---------------------------i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
... . +.++++. .-..+|+++++||+++.+
T Consensus 102 enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L----- 176 (235)
T 3tif_A 102 ENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL----- 176 (235)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS-----
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC-----
Confidence 000 0 1111111 112359999999999866
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....+++..|.+++++.|.|||+++|... +..+||.|++|+.++.
T Consensus 177 ----D~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~---------~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 177 ----DSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN---------VARFGERIIYLKDGEV 223 (235)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCCEEEEECSCHH---------HHTTSSEEEEEETTEE
T ss_pred ----CHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH---------HHHhCCEEEEEECCEE
Confidence 6667778888888888878999999999863 3468999999998775
No 43
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.25 E-value=1e-11 Score=125.08 Aligned_cols=139 Identities=22% Similarity=0.315 Sum_probs=87.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY----------- 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~----------- 272 (583)
+.+|++++|.|+||+|||||+..+++.+.+.. ..+++.+.............+++-.++..++
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~------G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 111 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS------GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF 111 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE------EEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc------eEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHH
Confidence 57899999999999999999999998876532 2334443321110011111122111110000
Q ss_pred -------Ccc----cHHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCCCHHHH
Q 007957 273 -------SST----DIEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQV 315 (583)
Q Consensus 273 -------~~~----~~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qv 315 (583)
... .++++++. .-..+|+++++||+++.+ |....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L---------D~~~~ 182 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL---------DVLNA 182 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC---------CHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccc---------CHHHH
Confidence 000 01111111 122359999999999866 56667
Q ss_pred HHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 316 KECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 316 rei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
..+...|.+++++ |.+||+++|.... ++.+||.+++|+.++.
T Consensus 183 ~~l~~~l~~l~~~-g~tiiivtHd~~~--------~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 183 REVRKILKQASQE-GLTILVSSHNMLE--------VEFLCDRIALIHNGTI 224 (256)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEECCHHH--------HTTTCSEEEEEETTEE
T ss_pred HHHHHHHHHHHhC-CCEEEEEcCCHHH--------HHHHCCEEEEEECCEE
Confidence 7788888887654 9999999998754 7889999999998764
No 44
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.25 E-value=6.1e-12 Score=127.38 Aligned_cols=140 Identities=17% Similarity=0.262 Sum_probs=91.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHH--------------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRA-------------------- 259 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~-------------------- 259 (583)
+.+|++++|.|+||+|||||+..+++.+.... ..+++.++. +..+...+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~------G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH------GECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ 107 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSS------CEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC------cEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHH
Confidence 58899999999999999999999998876642 244444432 122221111
Q ss_pred -------------------Hhccccc---cccccCCcccHHH--HHHHhcc-----cCCCEEEEccchhhhhhcccCCCC
Q 007957 260 -------------------DRMMIAT---EELFLYSSTDIED--IVEKVQP-----LSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 260 -------------------~rl~i~~---~~i~i~~~~~~e~--i~~~i~~-----~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
+.+++.. ....-++....++ |..++.. .+|+++++||+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~L--------- 178 (266)
T 4g1u_C 108 MGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSAL--------- 178 (266)
T ss_dssp GGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSC---------
T ss_pred hhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccC---------
Confidence 1111100 0000011111111 1111211 289999999999865
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....+++..|.+++++.+++||+++|.... ++.+||+|++|++++.
T Consensus 179 D~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~--------~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 179 DLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL--------AALYADRIMLLAQGKL 226 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH--------HHHhCCEEEEEECCEE
Confidence 66677888888889988878999999998754 7889999999998764
No 45
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.25 E-value=1.5e-11 Score=124.37 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=51.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... ++.+||.|++|++++.
T Consensus 177 ~p~lllLDEPts~L---------D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~--------~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 177 EPKIMLFDEPTSAL---------DPEMVGEVLSVMKQLANE-GMTMVVVTHEMGF--------AREVGDRVLFMDGGYI 237 (263)
T ss_dssp CCSEEEEESTTTTS---------CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999876 666677888888888776 9999999998754 7889999999998764
No 46
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.24 E-value=3.9e-11 Score=120.79 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=51.8
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ |.+||+++|.... ++.+||+|++|++++.
T Consensus 171 ~p~lllLDEPts~L---------D~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~--------~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 171 NPKMIVMDEPIAGV---------APGLAHDIFNHVLELKAK-GITFLIIEHRLDI--------VLNYIDHLYVMFNGQI 231 (257)
T ss_dssp CCSEEEEESTTTTC---------CHHHHHHHHHHHHHHHHT-TCEEEEECSCCST--------TGGGCSEEEEEETTEE
T ss_pred CCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 49999999999866 666777888888888766 9999999999865 8889999999998764
No 47
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.24 E-value=2.8e-11 Score=119.40 Aligned_cols=138 Identities=20% Similarity=0.273 Sum_probs=88.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHH-HHHHhccccccccccCCc----
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIG-NRADRMMIATEELFLYSS---- 274 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~-~R~~rl~i~~~~i~i~~~---- 274 (583)
+.+|++++|.|+||+|||||+..+++.+.+. ...+++.+.. +..+.. .|...+++-.++..++..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~------~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 100 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPT------EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTAL 100 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCS------EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC------ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHH
Confidence 5789999999999999999999999887653 2344555432 222211 111223322211111000
Q ss_pred --------------c----cHHHHHHH--------------------------hcccCCCEEEEccchhhhhhcccCCCC
Q 007957 275 --------------T----DIEDIVEK--------------------------VQPLSPRALIIDSIQTVYLRGVAGSAG 310 (583)
Q Consensus 275 --------------~----~~e~i~~~--------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g 310 (583)
. .++++++. +-..+|+++++||+++.+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L--------- 171 (224)
T 2pcj_A 101 ENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL--------- 171 (224)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC---------
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC---------
Confidence 0 01112221 112359999999999865
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 311 ~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.+++++ |.+||+++|.... + .+||.+++|+.++.
T Consensus 172 D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~--------~-~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 172 DSANTKRVMDIFLKINEG-GTSIVMVTHEREL--------A-ELTHRTLEMKDGKV 217 (224)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH--------H-TTSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------H-HhCCEEEEEECCEE
Confidence 566677788888888777 9999999998632 4 68999999988764
No 48
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.20 E-value=4.8e-11 Score=120.47 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.+++++ |.|||+++|.... ++.+||.|++|+.++.
T Consensus 171 ~p~lllLDEPts~L---------D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~--------~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 171 EPDVLLFDEPTSAL---------DPELVGEVLRIMQQLAEE-GKTMVVVTHEMGF--------ARHVSSHVIFLHQGKI 231 (262)
T ss_dssp CCSEEEEESTTTTS---------CHHHHHHHHHHHHHHHHT-TCCEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred CCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 59999999999866 666677888888888776 9999999998754 7889999999998764
No 49
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.20 E-value=1.2e-11 Score=130.13 Aligned_cols=63 Identities=8% Similarity=0.166 Sum_probs=52.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|.++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 155 ~~P~lLLLDEPts~L---------D~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e--------a~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 155 PDPELILLDEPFSAL---------DEQLRRQIREDMIAALRANGKSAVFVSHDREE--------ALQYADRIAVMKQGRI 217 (359)
T ss_dssp TCCSEEEEESTTTTS---------CHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--------HHHHCSEEEEEETTEE
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------HHHHCCEEEEEECCEE
Confidence 469999999999865 55556666677888888899999999999755 7889999999998765
No 50
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.19 E-value=1.3e-11 Score=130.76 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=90.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC------------------------H-HHH---
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES------------------------V-EQI--- 255 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees------------------------~-~qi--- 255 (583)
+.+|+++.|.|+||+|||||++.+++......+ -+++.++.- . +.+
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G------~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~ 99 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG------DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE------EEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHH
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe------EEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHH
Confidence 578999999999999999999999998776422 333333211 0 001
Q ss_pred -----------HHH----HHhcccccc---ccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHH
Q 007957 256 -----------GNR----ADRMMIATE---ELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316 (583)
Q Consensus 256 -----------~~R----~~rl~i~~~---~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvr 316 (583)
..+ ++.+++... ...-++....++ .+...-..+|+++++||+++.+ |.....
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~L---------D~~~~~ 170 (381)
T 3rlf_A 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL---------DAALRV 170 (381)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTS---------CHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC---------CHHHHH
Confidence 000 111121100 000011111111 1111222369999999999865 556667
Q ss_pred HHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 317 ei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
++...|+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 171 ~l~~~l~~l~~~~g~tii~vTHd~~e--------a~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 171 QMRIEISRLHKRLGRTMIYVTHDQVE--------AMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 78888888888889999999999765 8889999999998765
No 51
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.18 E-value=3.6e-11 Score=119.83 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=88.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhcccccc------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATE------------ 267 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~------------ 267 (583)
+.+|++++|.|+||+|||||+..+++.+.+. ...+++.+... ..+... ..+++-.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~------~G~i~~~g~~~~~~~~~~~~~--~~i~~v~q~~~l~~~ltv~e 100 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ------KGKIIFNGQDITNKPAHVINR--MGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEECTTCCHHHHHH--TTEEEECSSCCCCTTSBHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CceEEECCEECCCCCHHHHHh--CCEEEEecCCccCCCCcHHH
Confidence 5789999999999999999999999887653 23444544321 111111 11222111
Q ss_pred ccccC-----Cccc----HHHHHHHh---------------------------cccCCCEEEEccchhhhhhcccCCCCC
Q 007957 268 ELFLY-----SSTD----IEDIVEKV---------------------------QPLSPRALIIDSIQTVYLRGVAGSAGG 311 (583)
Q Consensus 268 ~i~i~-----~~~~----~e~i~~~i---------------------------~~~~p~lVVIDsi~~l~~~~~~~~~g~ 311 (583)
++.+. .... ++++++.+ -..+|+++++||+++.+ |
T Consensus 101 nl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L---------D 171 (240)
T 1ji0_A 101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---------A 171 (240)
T ss_dssp HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTC---------C
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC---------C
Confidence 11110 0111 12222211 11249999999999866 6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
......+...|.++++ .|.+||+++|.... +..+||+|++|++++.
T Consensus 172 ~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~--------~~~~~d~v~~l~~G~i 217 (240)
T 1ji0_A 172 PILVSEVFEVIQKINQ-EGTTILLVEQNALG--------ALKVAHYGYVLETGQI 217 (240)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEecCHHH--------HHHhCCEEEEEECCEE
Confidence 6667778888888876 59999999998744 7889999999998764
No 52
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.15 E-value=8.7e-11 Score=117.77 Aligned_cols=135 Identities=17% Similarity=0.275 Sum_probs=88.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccc-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEE----------- 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~----------- 268 (583)
+.+|++++|.|+||+|||||+..+++.+... ..+++.+.. +..+++ ..+++..++
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-------G~i~~~g~~~~~~~~~~~~---~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-------GSIQFAGQPLEAWSATKLA---LHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-------EEEEETTEEGGGSCHHHHH---HHEEEECSCCCCCTTCBHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-------eEEEECCEECCcCCHHHHh---ceEEEECCCCccCCCCcHHH
Confidence 5789999999999999999999999887652 244555432 122222 122221111
Q ss_pred -cccC-----CcccHHHHHHHhc--------------------------ccCCC-------EEEEccchhhhhhcccCCC
Q 007957 269 -LFLY-----SSTDIEDIVEKVQ--------------------------PLSPR-------ALIIDSIQTVYLRGVAGSA 309 (583)
Q Consensus 269 -i~i~-----~~~~~e~i~~~i~--------------------------~~~p~-------lVVIDsi~~l~~~~~~~~~ 309 (583)
+.+. ....++++++.+. ..+|+ ++++||+++.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L-------- 164 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL-------- 164 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC--------
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC--------
Confidence 1110 0011222222211 11388 99999999866
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 310 GGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 310 g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.+++++ |.+||+++|.... ++.+||.+++|++++.
T Consensus 165 -D~~~~~~l~~~l~~l~~~-g~tviivtHd~~~--------~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 165 -DVAQQSALDKILSALSQQ-GLAIVMSSHDLNH--------TLRHAHRAWLLKGGKM 211 (249)
T ss_dssp -CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred -CHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 666677888888888776 9999999998754 7789999999998764
No 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.15 E-value=4.2e-11 Score=126.17 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=52.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 150 ~~P~lLLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~--------~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNL---------DANLRMIMRAEIKHLQQELGITSVYVTHDQAE--------AMTMASRIAVFNQGKL 212 (359)
T ss_dssp TCCSEEEEESTTTTS---------CHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred cCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------HHHhCCEEEEEECCEE
Confidence 469999999999865 55666777888888888889999999998755 7789999999998764
No 54
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.15 E-value=1.7e-10 Score=116.63 Aligned_cols=137 Identities=23% Similarity=0.271 Sum_probs=88.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccc-------------cc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE-------------LF 270 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~-------------i~ 270 (583)
+.+|++++|.|+||+|||||+..+++.+.... ..+++.+...... .....+++..++ +.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~------G~I~~~g~~~~~~--~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTS------GDVLYDGERKKGY--EIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE------EEEEETTEECCHH--HHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC------cEEEECCEECchH--HhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 57899999999999999999999998876532 2334443321111 111112211110 00
Q ss_pred c-----CCcc----cHHHHHHH----------------------------hcccCCCEEEEccchhhhhhcccCCCCCHH
Q 007957 271 L-----YSST----DIEDIVEK----------------------------VQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313 (583)
Q Consensus 271 i-----~~~~----~~e~i~~~----------------------------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~ 313 (583)
+ .... .++++++. .-..+|+++++||+++.+ |..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L---------D~~ 172 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL---------DRE 172 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTC---------CHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccC---------CHH
Confidence 0 0000 01222221 112359999999999866 666
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 314 qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
....+...|.+++++ |.|||+++|.... +..+||.+++|+.++.
T Consensus 173 ~~~~l~~~l~~l~~~-g~tii~vtHd~~~--------~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 173 GKTDLLRIVEKWKTL-GKTVILISHDIET--------VINHVDRVVVLEKGKK 216 (266)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEECSCCTT--------TGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 777888888888777 9999999998765 7889999999998764
No 55
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.14 E-value=4.8e-11 Score=125.27 Aligned_cols=139 Identities=16% Similarity=0.263 Sum_probs=90.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCC----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS---------- 273 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~---------- 273 (583)
+.+|+++.|.|+||+|||||++.+++...... .-+++.++.-.. +....+.+++-.++..++.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~------G~I~~~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDS------GRILLDGKDVTD-LSPEKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE------EEEEETTEECTT-SCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCC------cEEEECCEECCC-CchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 57899999999999999999999999876542 234444432110 0000011222111111000
Q ss_pred --------c-ccHHHHH--------------------------HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHH
Q 007957 274 --------S-TDIEDIV--------------------------EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKEC 318 (583)
Q Consensus 274 --------~-~~~e~i~--------------------------~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei 318 (583)
. ..+++++ ...-..+|+++++||+++.+ |.....++
T Consensus 96 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L---------D~~~~~~l 166 (348)
T 3d31_A 96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL---------DPRTQENA 166 (348)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS---------CHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC---------CHHHHHHH
Confidence 0 0111112 12223359999999999865 56666778
Q ss_pred HHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 319 TSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 319 ~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
...|+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 167 ~~~l~~l~~~~g~tii~vTHd~~~--------~~~~adri~vl~~G~i 206 (348)
T 3d31_A 167 REMLSVLHKKNKLTVLHITHDQTE--------ARIMADRIAVVMDGKL 206 (348)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHH--------HHHHCSEEEEESSSCE
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 888888888889999999998755 7889999999987764
No 56
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.14 E-value=3.3e-11 Score=120.21 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=52.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......+...|.+++++.|.+||+++|.... +..+||.+++|++++.
T Consensus 143 ~~p~lllLDEPts~L---------D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~--------~~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 143 IQPRLLLLDEPLSAV---------DLKTKGVLMEELRFVQREFDVPILHVTHDLIE--------AAMLADEVAVMLNGRI 205 (240)
T ss_dssp TCCSSBEEESTTSSC---------CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred cCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 359999999999865 66667788888888877779999999998754 7889999999998764
No 57
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.14 E-value=3.3e-11 Score=126.74 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=90.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C--------CCccEEEEeCcc------CHH-HHHH-------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G--------EPSPVVYVSGEE------SVE-QIGN------- 257 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~--------~~~~VLyis~Ee------s~~-qi~~------- 257 (583)
+.+|+++.|.|+||+|||||++.+++......+. + ....+.|+.-+. +.. .+..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999887654220 0 001233332210 111 1100
Q ss_pred -----------HHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH
Q 007957 258 -----------RADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL 322 (583)
Q Consensus 258 -----------R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L 322 (583)
-++.+++.. ....-++....++ .+...-..+|+++++||+++.+ |.....++...|
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~L---------D~~~r~~l~~~l 188 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI---------DTQIRRELRTFV 188 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCS---------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC---------CHHHHHHHHHHH
Confidence 011112110 0000111111111 1222233469999999998765 556667777888
Q ss_pred HHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 323 LRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 323 ~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 189 ~~l~~~~g~tvi~vTHd~~~--------a~~~adri~vl~~G~i 224 (355)
T 1z47_A 189 RQVHDEMGVTSVFVTHDQEE--------ALEVADRVLVLHEGNV 224 (355)
T ss_dssp HHHHHHHTCEEEEECSCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHhcCCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 88888889999999998755 7889999999998764
No 58
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.14 E-value=6.7e-11 Score=120.54 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=51.4
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE--EEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV--LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV--IlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
+|+++++||+++.+ |......+...|.+++++ |.+| |+++|.... ++.+||.|++|++++
T Consensus 179 ~p~lLlLDEPts~L---------D~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~--------~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 179 QPQVLILDEPAAGL---------DFIARESLLSILDSLSDS-YPTLAMIYVTHFIEE--------ITANFSKILLLKDGQ 240 (279)
T ss_dssp CCSEEEEESTTTTC---------CHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGG--------CCTTCCEEEEEETTE
T ss_pred CCCEEEEeCCcccc---------CHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHH--------HHHhCCEEEEEECCE
Confidence 59999999999866 666677888888888777 8999 999998755 778999999998876
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 241 i 241 (279)
T 2ihy_A 241 S 241 (279)
T ss_dssp E
T ss_pred E
Confidence 4
No 59
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.13 E-value=4.7e-11 Score=125.88 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=90.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C--------CCccEEEEeCcc------CHH-HHHH-------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G--------EPSPVVYVSGEE------SVE-QIGN------- 257 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~--------~~~~VLyis~Ee------s~~-qi~~------- 257 (583)
+.+|+++.|.|+||+|||||++.+++......+. + ....+.|+.-+. +.. .+..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999999999987654220 0 001233332210 111 1100
Q ss_pred -----------HHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH
Q 007957 258 -----------RADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL 322 (583)
Q Consensus 258 -----------R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L 322 (583)
-++.+++.. ....-++....++ .+...-..+|+++++||+++.+ |.....++...|
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~L---------D~~~r~~l~~~l 176 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL---------DALLRLEVRAEL 176 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGS---------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC---------CHHHHHHHHHHH
Confidence 011112110 0000111111111 1222233469999999999876 556667778888
Q ss_pred HHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 323 LRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 323 ~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+++.++.|+|+|+++|...+ +..+||+|++|+.++.
T Consensus 177 ~~l~~~~g~tvi~vTHd~~~--------a~~~adri~vl~~G~i 212 (362)
T 2it1_A 177 KRLQKELGITTVYVTHDQAE--------ALAMADRIAVIREGEI 212 (362)
T ss_dssp HHHHHHHTCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHhCCCEEEEECCCHHH--------HHHhCCEEEEEECCEE
Confidence 88888889999999998755 7789999999998764
No 60
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.12 E-value=5.2e-11 Score=126.00 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=89.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----C--------CCccEEEEeCcc------CH-------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----G--------EPSPVVYVSGEE------SV------------- 252 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~--------~~~~VLyis~Ee------s~------------- 252 (583)
+.+|+++.|.|+||+|||||++.+++......+. + ....+-|+.-+. +.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 113 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999999999987654220 0 001222322110 00
Q ss_pred --HH----HHHHHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH
Q 007957 253 --EQ----IGNRADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL 322 (583)
Q Consensus 253 --~q----i~~R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L 322 (583)
.+ +..-++.+++.. ....-++....++ .+...-..+|+++++||+++.+ |.....++...|
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~L---------D~~~r~~l~~~l 184 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL---------DAKLRVAMRAEI 184 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTS---------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC---------CHHHHHHHHHHH
Confidence 00 000011122110 0000111111121 1222223469999999999865 556667778888
Q ss_pred HHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 323 LRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 323 ~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+++.++.|+|+|+++|...+ +..+||+|++|+.++.
T Consensus 185 ~~l~~~~g~tvi~vTHd~~~--------a~~~adri~vl~~G~i 220 (372)
T 1v43_A 185 KKLQQKLKVTTIYVTHDQVE--------AMTMGDRIAVMNRGQL 220 (372)
T ss_dssp HHHHHHHTCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred HHHHHhCCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 88888889999999998755 7789999999998764
No 61
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.10 E-value=1.2e-10 Score=117.04 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=91.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc------CHHH-HH-------------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE------SVEQ-IG------------------- 256 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee------s~~q-i~------------------- 256 (583)
+.+|++++|.|+||+|||||+..+++.+.+..+.. ....+.|+.-+. +..+ +.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 57899999999999999999999998876542200 012355654321 1111 11
Q ss_pred ---HHHHhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC
Q 007957 257 ---NRADRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329 (583)
Q Consensus 257 ---~R~~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~ 329 (583)
.-++.+++.. ....-++....++ .+..+-..+|+++++||+++.+ |......+...|.+++++.
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L---------D~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL---------DLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS---------CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhc
Confidence 0111122210 0000111111111 1122223479999999999866 6666778888888887777
Q ss_pred CCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 330 g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
|.+||+++|.... ++.+||.+++|++++
T Consensus 179 g~tvi~vtHd~~~--------~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 179 NMTVVFTTHQPNQ--------VVAIANKTLLLNKQN 206 (253)
T ss_dssp CCEEEEEESCHHH--------HHHHCSEEEEEETTE
T ss_pred CCEEEEEecCHHH--------HHHhCCEEEEEeCCe
Confidence 9999999998754 778999999998765
No 62
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.10 E-value=4.8e-11 Score=126.34 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=52.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 156 ~~P~lLLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~--------a~~~adri~vl~~G~i 218 (372)
T 1g29_1 156 RKPQVFLMDEPLSNL---------DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE--------AMTMGDRIAVMNRGVL 218 (372)
T ss_dssp TCCSEEEEECTTTTS---------CHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred cCCCEEEECCCCccC---------CHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--------HHHhCCEEEEEeCCEE
Confidence 469999999999865 55666777788888888889999999998755 7889999999998764
No 63
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.09 E-value=2.6e-11 Score=127.58 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=51.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |.....++...|+++.++.|+|+|+++|...+ +..+||+|++|++++.
T Consensus 157 ~~P~lLLLDEP~s~L---------D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~--------~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNL---------DARMRDSARALVKEVQSRLGVTLLVVSHDPAD--------IFAIADRVGVLVKGKL 219 (353)
T ss_dssp TCCSEEEEESTTTTS---------CGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH--------HHHHCSEEEEEETTEE
T ss_pred hCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------HHHhCCEEEEEECCEE
Confidence 469999999999876 33345566777777877789999999998755 7889999999998764
No 64
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.07 E-value=2e-10 Score=113.26 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
.+|.+++++|++|+||||++++++..+... +.+|+|+..+........-+.++++....+.+.. .+++.+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-----g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~---~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-----DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVES---APEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESS---THHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEEeccCchHHHHHHHhcCCCccccccCC---HHHHHHHH
Confidence 678999999999999999999999998764 6789999766543210011344555443333322 23444444
Q ss_pred cc----cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEE
Q 007957 285 QP----LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAV 358 (583)
Q Consensus 285 ~~----~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~V 358 (583)
.. .++++|+|||+|.+. . +.+..+..++.. +++||+++|.+.- +. ..++..|-.+||.|
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~----------~----~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V 146 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFD----------D----RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKI 146 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSC----------T----HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEE
T ss_pred HHHhhCCCCCEEEEecCccCc----------H----HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheE
Confidence 33 469999999999742 1 233444555554 9999999997643 22 23456677799999
Q ss_pred EEEe
Q 007957 359 LYME 362 (583)
Q Consensus 359 l~Le 362 (583)
..|.
T Consensus 147 ~el~ 150 (223)
T 2b8t_A 147 TKLT 150 (223)
T ss_dssp EECC
T ss_pred eecc
Confidence 9875
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.07 E-value=1.1e-10 Score=118.47 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=87.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~----------- 267 (583)
-+.+|++++|.|+||+|||||+..+++.+... ...+++.+... ...++ ..+++-.+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~------~G~I~~~g~~i~~~~~~~~~---~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPT------GGKVLLDGEPLVQYDHHYLH---TQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEEGGGBCHHHHH---HHEEEECSSCCCCSSBHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CCEEEECCEEcccCCHHHHh---ccEEEEecCCccccccHHH
Confidence 36899999999999999999999999887653 23445554321 22221 12222111
Q ss_pred ccccC----Cc-ccH---------HHHHHH----------------------------hcccCCCEEEEccchhhhhhcc
Q 007957 268 ELFLY----SS-TDI---------EDIVEK----------------------------VQPLSPRALIIDSIQTVYLRGV 305 (583)
Q Consensus 268 ~i~i~----~~-~~~---------e~i~~~----------------------------i~~~~p~lVVIDsi~~l~~~~~ 305 (583)
++.+. .. ..+ +++++. +-..+|+++++||+++.+
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L---- 187 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL---- 187 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTC----
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC----
Confidence 11110 00 000 111111 112259999999999866
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.+++++.+.+||+++|.... ++. ||.|++|++++.
T Consensus 188 -----D~~~~~~i~~~l~~~~~~~g~tviivtHd~~~--------~~~-~d~v~~l~~G~i 234 (271)
T 2ixe_A 188 -----DAGNQLRVQRLLYESPEWASRTVLLITQQLSL--------AER-AHHILFLKEGSV 234 (271)
T ss_dssp -----CHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH--------HTT-CSEEEEEETTEE
T ss_pred -----CHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH--------HHh-CCEEEEEECCEE
Confidence 56666777888888776679999999998643 555 999999998764
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.05 E-value=2.3e-10 Score=114.56 Aligned_cols=134 Identities=17% Similarity=0.252 Sum_probs=85.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------c
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE-----------E 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~-----------~ 268 (583)
+.+|++++|.|+||+|||||+..+++.+.+. ...+++.+.. +..+++ ..+++-.+ +
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~------~G~I~i~g~~~~~~~~~~~~---~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE------NGQVLIDGHDLALADPNWLR---RQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCS------EEEEEETTEETTTSCHHHHH---HHEEEECSSCCCTTSBHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC------CcEEEECCEEhhhCCHHHHH---hcEEEEeCCCccccccHHHH
Confidence 5789999999999999999999999887653 2345555533 122222 22222111 1
Q ss_pred cccCC-ccc---HHHHHHH-------------------------------------hcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFLYS-STD---IEDIVEK-------------------------------------VQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i~~-~~~---~e~i~~~-------------------------------------i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+.+.. ... +.++++. +-..+|+++++||+++.+
T Consensus 103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~L------ 176 (247)
T 2ff7_A 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL------ 176 (247)
T ss_dssp HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC------
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC------
Confidence 11110 001 1111111 111259999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......++..|.++ ++ +.|||+++|.... ++. ||.|++|+.++.
T Consensus 177 ---D~~~~~~i~~~l~~~-~~-g~tviivtH~~~~--------~~~-~d~v~~l~~G~i 221 (247)
T 2ff7_A 177 ---DYESEHVIMRNMHKI-CK-GRTVIIIAHRLST--------VKN-ADRIIVMEKGKI 221 (247)
T ss_dssp ---CHHHHHHHHHHHHHH-HT-TSEEEEECSSGGG--------GTT-SSEEEEEETTEE
T ss_pred ---CHHHHHHHHHHHHHH-cC-CCEEEEEeCCHHH--------HHh-CCEEEEEECCEE
Confidence 566667777788777 33 8999999998643 555 999999998764
No 67
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.00 E-value=7.7e-10 Score=110.79 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++++ .|.+||+++|.... ++.+ ||+|++|+.++.
T Consensus 161 ~p~lllLDEPts~L---------D~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~--------~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 161 EPTYAVLDETDSGL---------DIDALKVVARGVNAMRG-PNFGALVITHYQRI--------LNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp CCSEEEEECGGGTT---------CHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG--------GGTSCCSEEEEEETTEE
T ss_pred CCCEEEEeCCCcCC---------CHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH--------HHHhcCCEEEEEECCEE
Confidence 59999999999876 56666777777877754 58999999998754 7777 599999988763
No 68
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.99 E-value=2.5e-10 Score=117.72 Aligned_cols=135 Identities=15% Similarity=0.333 Sum_probs=85.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCC-----
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYS----- 273 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~----- 273 (583)
-+++|++++|.|++|+|||||+..+++.+... ...+++++.. +...++ ..+++..++..++.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~------~G~I~i~G~~i~~~~~~~~r---~~i~~v~Q~~~lf~~Tv~e 146 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDIS------SGCIRIDGQDISQVTQASLR---SHIGVVPQDTVLFNDTIAD 146 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCS------EEEEEETTEETTSBCHHHHH---HTEEEECSSCCCCSEEHHH
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCC------CcEEEECCEEcccCCHHHHh---cceEEEecCCccCcccHHH
Confidence 36899999999999999999999998887654 2345555542 222222 22222221111110
Q ss_pred ----------cccHHHHHH-------------------------------------HhcccCCCEEEEccchhhhhhccc
Q 007957 274 ----------STDIEDIVE-------------------------------------KVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 274 ----------~~~~e~i~~-------------------------------------~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
...+.+.++ ..--.+|+++|+||+++.+
T Consensus 147 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L----- 221 (306)
T 3nh6_A 147 NIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL----- 221 (306)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC-----
T ss_pred HHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC-----
Confidence 001111111 1111259999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+...|.++.+ +.|+|+++|.... +.. ||.|++|+.++.
T Consensus 222 ----D~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~--------~~~-aD~i~vl~~G~i 266 (306)
T 3nh6_A 222 ----DTSNERAIQASLAKVCA--NRTTIVVAHRLST--------VVN-ADQILVIKDGCI 266 (306)
T ss_dssp ----CHHHHHHHHHHHHHHHT--TSEEEEECCSHHH--------HHT-CSEEEEEETTEE
T ss_pred ----CHHHHHHHHHHHHHHcC--CCEEEEEEcChHH--------HHc-CCEEEEEECCEE
Confidence 55556667777777654 6899999998743 666 999999998875
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.98 E-value=2.3e-09 Score=108.31 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=84.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC----CC-------CccEE-EEeCcc----CHH-H------------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL----GE-------PSPVV-YVSGEE----SVE-Q------------ 254 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~----~~-------~~~VL-yis~Ee----s~~-q------------ 254 (583)
+. |++++|.|+||+|||||++.+++.+ +..+. +. ...+. |+.-+. +.. .
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 57 9999999999999999999999987 64320 10 11344 443221 111 1
Q ss_pred --HHHHHHhcccc-c---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH
Q 007957 255 --IGNRADRMMIA-T---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK 327 (583)
Q Consensus 255 --i~~R~~rl~i~-~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk 327 (583)
+...++.+++. . ....-++....++ .+..+-..+|+++++||+++.+ |......+...|.++++
T Consensus 106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L---------D~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV---------DAARRHVISRYIKEYGK 176 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC---------CHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc---------CHHHHHHHHHHHHHhcC
Confidence 11112333332 1 0111122222222 1222333579999999999865 55556666666666532
Q ss_pred cCCCcEEEecccCCccCcCCccchheecc-EEEEEeCcee
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVD-AVLYMEGEKF 366 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~~aD-~Vl~Le~~~~ 366 (583)
+||+++|.... +..+|| .++.|+.++.
T Consensus 177 ----tviivtHd~~~--------~~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 177 ----EGILVTHELDM--------LNLYKEYKAYFLVGNRL 204 (263)
T ss_dssp ----EEEEEESCGGG--------GGGCTTSEEEEEETTEE
T ss_pred ----cEEEEEcCHHH--------HHHhcCceEEEEECCEE
Confidence 99999998754 788999 9999988764
No 70
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.97 E-value=6.5e-10 Score=123.20 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=96.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCc------cCHHHHHHHH---------------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGE------ESVEQIGNRA--------------- 259 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~E------es~~qi~~R~--------------- 259 (583)
-+.+|++++|.|+||+|||||+..+++.+....+. ..+..+.|+..+ .+..+.....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~ 369 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV 369 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH
Confidence 36899999999999999999999999987765431 123345565432 2222222111
Q ss_pred -Hhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEE
Q 007957 260 -DRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334 (583)
Q Consensus 260 -~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVI 334 (583)
+.+++.. ..+.-++....++ .+...-..+|+++++||+++.+ |.....++...|.+++++.+.+||
T Consensus 370 l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL---------D~~~~~~i~~~l~~l~~~~g~tvi 440 (538)
T 3ozx_A 370 TKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL---------DVEERYIVAKAIKRVTRERKAVTF 440 (538)
T ss_dssp TTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC---------CHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHhCCCEEE
Confidence 1111110 0011112222222 2333344689999999999865 677778888999999988999999
Q ss_pred EecccCCccCcCCccchheeccEEEEEeC
Q 007957 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 335 lisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
+++|.... +..+||+|++|++
T Consensus 441 ~vsHdl~~--------~~~~aDri~vl~~ 461 (538)
T 3ozx_A 441 IIDHDLSI--------HDYIADRIIVFKG 461 (538)
T ss_dssp EECSCHHH--------HHHHCSEEEEEEE
T ss_pred EEeCCHHH--------HHHhCCEEEEEeC
Confidence 99999855 8889999999985
No 71
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.97 E-value=6.7e-10 Score=108.81 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=83.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC----CCC-----CccEEEEeCcc------CHH-HHH-----------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD----LGE-----PSPVVYVSGEE------SVE-QIG----------- 256 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~----~~~-----~~~VLyis~Ee------s~~-qi~----------- 256 (583)
+.+|++++|.|+||+|||||+..+++.+.+..+ .+. ...+.|+..+. +.. .+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 478999999999999999999999988765422 010 01244554321 111 111
Q ss_pred -----HHHHhccccc--cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHc
Q 007957 257 -----NRADRMMIAT--EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328 (583)
Q Consensus 257 -----~R~~rl~i~~--~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~ 328 (583)
.-++.+++.. ....-++....++ .+..+-..+|+++++||+++.++ ......+...|.+++++
T Consensus 112 ~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD---------~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID---------EDSKHKVLKSILEILKE 182 (214)
T ss_dssp HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC---------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC---------HHHHHHHHHHHHHHHhC
Confidence 1112222211 0011111111222 22223345799999999998762 22344556666666555
Q ss_pred CCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 329 TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 329 ~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
|.+||+++|.... ++.++|.|+.+.
T Consensus 183 -g~tiiivtHd~~~--------~~~~~d~v~~~~ 207 (214)
T 1sgw_A 183 -KGIVIISSREELS--------YCDVNENLHKYS 207 (214)
T ss_dssp -HSEEEEEESSCCT--------TSSEEEEGGGGB
T ss_pred -CCEEEEEeCCHHH--------HHHhCCEEEEeC
Confidence 8899999999865 888899888664
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.96 E-value=8.3e-10 Score=111.69 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=48.9
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhee-ccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI-VDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~-aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.++++ .|.+||+++|.... ++.+ ||++++|+.++
T Consensus 181 ~~p~lLlLDEPts~L---------D~~~~~~l~~~l~~l~~-~g~tviivtHd~~~--------~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 181 LEPELCILDESDSGL---------DIDALKVVADGVNSLRD-GKRSFIIVTHYQRI--------LDYIKPDYVHVLYQGR 242 (267)
T ss_dssp HCCSEEEEESTTTTC---------CHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG--------GGTSCCSEEEEEETTE
T ss_pred hCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH--------HHhhcCCEEEEEECCE
Confidence 369999999999866 55666677777777654 48999999998754 6665 89999998876
Q ss_pred e
Q 007957 366 F 366 (583)
Q Consensus 366 ~ 366 (583)
.
T Consensus 243 i 243 (267)
T 2zu0_C 243 I 243 (267)
T ss_dssp E
T ss_pred E
Confidence 3
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.92 E-value=1.2e-09 Score=110.18 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+...|.++. + +.|||+++|.... ++. ||.|++|++++.
T Consensus 173 ~p~lllLDEPts~L---------D~~~~~~i~~~l~~l~-~-~~tviivtH~~~~--------~~~-~d~i~~l~~G~i 231 (260)
T 2ghi_A 173 DPKIVIFDEATSSL---------DSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST--------ISS-AESIILLNKGKI 231 (260)
T ss_dssp CCSEEEEECCCCTT---------CHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG--------STT-CSEEEEEETTEE
T ss_pred CCCEEEEECccccC---------CHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH--------HHh-CCEEEEEECCEE
Confidence 59999999999866 5555667777777774 3 7899999998643 554 999999998764
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.2e-09 Score=119.10 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=96.9
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC-CCCccEEEEeCcc------CHHHHHH-H--------------H
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL-GEPSPVVYVSGEE------SVEQIGN-R--------------A 259 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~-~~~~~VLyis~Ee------s~~qi~~-R--------------~ 259 (583)
|-+.+|++++|.|+||+|||||+..+++.+....+. .....+.|+..+. +..+... + +
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 452 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHH
Confidence 457788999999999999999999999988765331 1122466664331 2222211 1 1
Q ss_pred Hhccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 007957 260 DRMMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335 (583)
Q Consensus 260 ~rl~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIl 335 (583)
+.+++.. ..+.-++....++ .+..+-..+|+++++||+++.+ |.....+++..|.+++++.|.|||+
T Consensus 453 ~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL---------D~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL---------DSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp HHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC---------CHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1122110 0111122222333 3344455689999999999865 6667778888888888878999999
Q ss_pred ecccCCccCcCCccchheeccEEEEEeC
Q 007957 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 336 isH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
++|.... +..+||+|++|++
T Consensus 524 vtHdl~~--------~~~~aDrvivl~~ 543 (608)
T 3j16_B 524 VEHDFIM--------ATYLADKVIVFEG 543 (608)
T ss_dssp ECSCHHH--------HHHHCSEEEECEE
T ss_pred EeCCHHH--------HHHhCCEEEEEeC
Confidence 9999855 8889999999985
No 75
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.90 E-value=5.3e-09 Score=117.45 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=96.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCC-CccEEEEeCcc------CHHHHHHH---------------HHh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGE-PSPVVYVSGEE------SVEQIGNR---------------ADR 261 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~-~~~VLyis~Ee------s~~qi~~R---------------~~r 261 (583)
+.+|++++|.|+||+|||||+..+++.+....+... ...+.|+.-+. +..+.... ++.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 578999999999999999999999998766543211 23466765432 22222111 122
Q ss_pred ccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEec
Q 007957 262 MMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337 (583)
Q Consensus 262 l~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlis 337 (583)
+++.. ..+.-++....++ .+..+-..+|+++++||+++.+ |.....++...|.+++++.|.+||+++
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~L---------D~~~~~~l~~~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYL---------DVEQRLAVSRAIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC---------CHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCC---------CHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 22211 0111122222233 3333445689999999999865 677778888889888888899999999
Q ss_pred ccCCccCcCCccchheeccEEEEEeC
Q 007957 338 HVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 338 H~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
|.... +..+||+|++|++
T Consensus 530 Hd~~~--------~~~~adrv~vl~~ 547 (607)
T 3bk7_A 530 HDVLM--------IDYVSDRLIVFEG 547 (607)
T ss_dssp SCHHH--------HHHHCSEEEEEEE
T ss_pred CCHHH--------HHHhCCEEEEEcC
Confidence 98754 8889999999974
No 76
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.89 E-value=2.1e-09 Score=107.08 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=43.8
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+++. . ...+...|.+++ + +.|||+++|.... ++ .||.|++|++++.
T Consensus 156 ~~p~lllLDEPts~LD~~------~---~~~i~~~l~~~~-~-~~tvi~vtH~~~~--------~~-~~d~v~~l~~G~i 215 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSE------S---ESMVQKALDSLM-K-GRTTLVIAHRLST--------IV-DADKIYFIEKGQI 215 (243)
T ss_dssp HCCSEEEEECCSCSSCSS------S---CCHHHHHHHHHH-T-TSEEEEECCSHHH--------HH-HCSEEEEEETTEE
T ss_pred cCCCEEEEECCcccCCHH------H---HHHHHHHHHHhc-C-CCEEEEEeCChHH--------HH-hCCEEEEEECCEE
Confidence 369999999999876332 1 234555666664 3 8999999998643 55 4999999998764
No 77
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.89 E-value=5.6e-09 Score=115.75 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=95.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCC-CccEEEEeCcc------CHHHHHHHH---------------Hh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGE-PSPVVYVSGEE------SVEQIGNRA---------------DR 261 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~-~~~VLyis~Ee------s~~qi~~R~---------------~r 261 (583)
+.+|++++|.|+||+|||||+..+++.+....+... ...+.|+.-+. +..++.... ++
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 478999999999999999999999998765433111 23466775432 232222111 11
Q ss_pred ccccc---cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEec
Q 007957 262 MMIAT---EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337 (583)
Q Consensus 262 l~i~~---~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlis 337 (583)
+++.. ..+.-++..+..+ .+..+-..+|+++|+||+++.+ |.....++...|.+++++.|.+||+++
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~L---------D~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL---------DVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC---------CHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC---------CHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 12210 0111122222222 3333445689999999999865 667778888888888877899999999
Q ss_pred ccCCccCcCCccchheeccEEEEEeC
Q 007957 338 HVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 338 H~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
|.... +..+||+|++|++
T Consensus 460 Hd~~~--------~~~~~drv~vl~~ 477 (538)
T 1yqt_A 460 HDVLM--------IDYVSDRLMVFEG 477 (538)
T ss_dssp SCHHH--------HHHHCSEEEEEEE
T ss_pred CCHHH--------HHHhCCEEEEEeC
Confidence 98755 8889999999974
No 78
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.86 E-value=3.6e-09 Score=105.11 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=82.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc-----CHH-HH-----------HHHHHhcccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE-----SVE-QI-----------GNRADRMMIA 265 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee-----s~~-qi-----------~~R~~rl~i~ 265 (583)
+.+|++++|.|+||+|||||+..+++.+.+..+.. -++.+.|+.-+. +.. .+ ....+.+++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 107 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence 58899999999999999999999998876542200 001244554321 111 11 1111111110
Q ss_pred ------c--------cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHH---HHHH
Q 007957 266 ------T--------EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALL---RFAK 327 (583)
Q Consensus 266 ------~--------~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~---~lAk 327 (583)
. ....-++....++ .+...-..+|+++++||+++.+ |......++..|. .+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L---------D~~~~~~i~~~l~~~~~~~- 177 (237)
T 2cbz_A 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV---------DAHVGKHIFENVIGPKGML- 177 (237)
T ss_dssp HHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS---------CHHHHHHHHHHTTSTTSTT-
T ss_pred HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc---------CHHHHHHHHHHHHHHHhhc-
Confidence 0 0001112111222 1122223479999999999866 4445555666553 232
Q ss_pred cCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 328 ~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+.|||+++|.... ++ .||.|++|+.++.
T Consensus 178 -~~~tviivtH~~~~--------~~-~~d~v~~l~~G~i 206 (237)
T 2cbz_A 178 -KNKTRILVTHSMSY--------LP-QVDVIIVMSGGKI 206 (237)
T ss_dssp -TTSEEEEECSCSTT--------GG-GSSEEEEEETTEE
T ss_pred -CCCEEEEEecChHH--------HH-hCCEEEEEeCCEE
Confidence 38999999998753 55 5999999998764
No 79
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=8e-09 Score=97.24 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=73.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
.+.+|..++|.|+||+|||||+..++..+... .+..++|++..+..+.+........ . ..+++
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~ 96 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK----KGIRGYFFDTKDLIFRLKHLMDEGK----------D---TKFLK 96 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH----SCCCCCEEEHHHHHHHHHHHHHHTC----------C---SHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHH----cCCeEEEEEHHHHHHHHHHHhcCch----------H---HHHHH
Confidence 45678999999999999999999999998744 2567889887665554443322110 0 12222
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~ 342 (583)
.+ .+++++|||+++... .+.. .++.+..+.+...+.+.++|+++|...+
T Consensus 97 ~~--~~~~llilDE~~~~~--------~~~~-~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TV--LNSPVLVLDDLGSER--------LSDW-QRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HH--HTCSEEEEETCSSSC--------CCHH-HHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred Hh--cCCCEEEEeCCCCCc--------CCHH-HHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 22 268999999997431 1222 2344444444445568999999998744
No 80
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.85 E-value=9e-09 Score=114.12 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=50.1
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
..+|+++++||+++.+ |......+...|.++.+ .|.+||+++|.... +..+||+|++|++
T Consensus 174 ~~~P~lLlLDEPTs~L---------D~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~--------~~~~~dri~vl~~ 233 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYL---------DIRQRLNAARAIRRLSE-EGKSVLVVEHDLAV--------LDYLSDIIHVVYG 233 (538)
T ss_dssp HSCCSEEEEESTTTTC---------CHHHHHHHHHHHHHHHH-TTCEEEEECSCHHH--------HHHHCSEEEEEEE
T ss_pred hcCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHHhCCEEEEEcC
Confidence 3479999999999876 66677788888888876 59999999998754 8889999999974
No 81
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.84 E-value=6.3e-09 Score=116.44 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=45.6
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++++||+++.+ |......+.+.|.++. + |.|+|+++|.... ++ .||.|+.|++++.
T Consensus 498 ~p~illlDEpts~L---------D~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~--------~~-~~d~i~~l~~G~i 556 (582)
T 3b5x_A 498 DAPVLILDEATSAL---------DTESERAIQAALDELQ-K-NKTVLVIAHRLST--------IE-QADEILVVDEGEI 556 (582)
T ss_pred CCCEEEEECccccC---------CHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH--------HH-hCCEEEEEECCEE
Confidence 59999999999865 4445556667777764 3 8999999998643 55 5999999998764
No 82
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.83 E-value=9.3e-09 Score=115.06 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=85.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|++++|.|++|+|||||+..+++.+.+. ...+++++.+ +..+++. .+++-.+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~------~G~i~~~g~~~~~~~~~~~~~---~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDID------EGHILMDGHDLREYTLASLRN---QVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTCCS------EEEEEETTEETTTBCHHHHHH---TEEEECSSCCCCSSBHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccCCC------CCeEEECCEEccccCHHHHHh---hCeEEccCCcCCCCCHHH
Confidence 36899999999999999999999999887654 2345555432 2222221 2222111
Q ss_pred ccccCC--cccHHHHHHH----------------------------------------hcccCCCEEEEccchhhhhhcc
Q 007957 268 ELFLYS--STDIEDIVEK----------------------------------------VQPLSPRALIIDSIQTVYLRGV 305 (583)
Q Consensus 268 ~i~i~~--~~~~e~i~~~----------------------------------------i~~~~p~lVVIDsi~~l~~~~~ 305 (583)
++.+.. ..+.+++.+. .--.+|+++++||+++.+
T Consensus 436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~L---- 511 (582)
T 3b60_A 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL---- 511 (582)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSC----
T ss_pred HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccC----
Confidence 111111 1111111111 111249999999999865
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 306 ~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++.+ |.|+|+++|.... ++ .||.|+.|++++.
T Consensus 512 -----D~~~~~~i~~~l~~~~~--~~tvi~itH~~~~--------~~-~~d~i~~l~~G~i 556 (582)
T 3b60_A 512 -----DTESERAIQAALDELQK--NRTSLVIAHRLST--------IE-QADEIVVVEDGII 556 (582)
T ss_dssp -----CHHHHHHHHHHHHHHHT--TSEEEEECSCGGG--------TT-TCSEEEEEETTEE
T ss_pred -----CHHHHHHHHHHHHHHhC--CCEEEEEeccHHH--------HH-hCCEEEEEECCEE
Confidence 45555667777777653 8999999998743 55 5999999998764
No 83
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.82 E-value=3.2e-09 Score=104.86 Aligned_cols=143 Identities=14% Similarity=0.203 Sum_probs=82.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc-----CHHH-H-----------HHHHHhcccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE-----SVEQ-I-----------GNRADRMMIA 265 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee-----s~~q-i-----------~~R~~rl~i~ 265 (583)
+++|++++|.|+||+|||||+..+++.+.+..+.. -++.+.|+.-+. +..+ + ...++..++.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 57899999999999999999999998876542200 011345554321 1111 1 1111111211
Q ss_pred c--cc------------cccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH-HHHHHcC
Q 007957 266 T--EE------------LFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL-LRFAKKT 329 (583)
Q Consensus 266 ~--~~------------i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L-~~lAk~~ 329 (583)
. +. ..-++....++ .+...-..+|+++++||+++.+ |......+...+ ..+. .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~L---------D~~~~~~i~~~l~~~~~--~ 179 (229)
T 2pze_A 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL---------DVLTEKEIFESCVCKLM--A 179 (229)
T ss_dssp HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTS---------CHHHHHHHHHHCCCCCT--T
T ss_pred HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCC---------CHHHHHHHHHHHHHHhh--C
Confidence 0 00 00111111222 2222333579999999999865 444445555543 2332 3
Q ss_pred CCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 330 g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+.|||+++|.... ++. ||.+++|++++.
T Consensus 180 ~~tvi~vtH~~~~--------~~~-~d~v~~l~~G~i 207 (229)
T 2pze_A 180 NKTRILVTSKMEH--------LKK-ADKILILHEGSS 207 (229)
T ss_dssp TSEEEEECCCHHH--------HHH-CSEEEEEETTEE
T ss_pred CCEEEEEcCChHH--------HHh-CCEEEEEECCEE
Confidence 7899999998643 554 999999998764
No 84
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.9e-09 Score=118.46 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=50.0
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCce
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~ 365 (583)
.+|+++++||+++.+ |......+...|.++.+ .|.+||+++|.... +.++||+|++|++..
T Consensus 238 ~~p~llllDEPts~L---------D~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~--------~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 238 QEADVYMFDEPSSYL---------DVKQRLNAAQIIRSLLA-PTKYVICVEHDLSV--------LDYLSDFVCIIYGVP 298 (608)
T ss_dssp SCCSEEEEECTTTTC---------CHHHHHHHHHHHHGGGT-TTCEEEEECSCHHH--------HHHHCSEEEEEESCT
T ss_pred hCCCEEEEECcccCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------HHHhCCEEEEEeCCc
Confidence 469999999999866 66667777777777765 48999999999855 889999999998643
No 85
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.82 E-value=1.3e-08 Score=114.34 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=50.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
.+|+++++||+++.+ |.....+++..|.+++++ |.+||+++|.... +..+||+|++|++.
T Consensus 245 ~~P~lLlLDEPTs~L---------D~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~--------~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYL---------DIRQRLKVARVIRRLANE-GKAVLVVEHDLAV--------LDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTC---------CHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH--------HHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccC---------CHHHHHHHHHHHHHHHhc-CCEEEEEecChHH--------HHhhCCEEEEECCC
Confidence 469999999999866 666777888888888764 9999999998644 78899999999853
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.81 E-value=6.7e-09 Score=110.52 Aligned_cols=133 Identities=19% Similarity=0.298 Sum_probs=80.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccC-------
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLY------- 272 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~------- 272 (583)
+.+|+++.|.|++|+|||||++.+++... .. .-+++.+.. +..+++ +.+++-.++..++
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~------G~I~i~G~~i~~~~~~~~r---r~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE------GEIQIDGVSWDSITLEQWR---KAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EE------EEEEESSCBTTSSCHHHHH---HTEEEESCCCCCCSEEHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC-CC------eEEEECCEECCcCChHHHh---CCEEEEcCCcccCccCHHHH
Confidence 58999999999999999999999998765 31 244555543 222221 1222221111110
Q ss_pred ----Cc---ccHHHHH-------------------------------------HHhcccCCCEEEEccchhhhhhcccCC
Q 007957 273 ----SS---TDIEDIV-------------------------------------EKVQPLSPRALIIDSIQTVYLRGVAGS 308 (583)
Q Consensus 273 ----~~---~~~e~i~-------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~~~ 308 (583)
.. ..+.+++ ...--.+|+++++||+++.+
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~L------- 186 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL------- 186 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHS-------
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC-------
Confidence 00 0011111 11112369999999999876
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 309 ~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|.....++...|+++ ..++|+|+++|.... +. +||+|++|+.++.
T Consensus 187 --D~~~~~~l~~~l~~~--~~~~tvi~vtHd~e~--------~~-~aDri~vl~~G~i 231 (390)
T 3gd7_A 187 --DPVTYQIIRRTLKQA--FADCTVILCEARIEA--------ML-ECDQFLVIEENKV 231 (390)
T ss_dssp --CHHHHHHHHHHHHTT--TTTSCEEEECSSSGG--------GT-TCSEEEEEETTEE
T ss_pred --CHHHHHHHHHHHHHH--hCCCEEEEEEcCHHH--------HH-hCCEEEEEECCEE
Confidence 444444555555543 247999999998632 44 4999999998775
No 87
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.80 E-value=1.3e-08 Score=112.88 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=49.0
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCc
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGE 364 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~ 364 (583)
..+|+++|+||+++.+ |......+...|.++. + |.+||+++|.... +..+||.|++|+++
T Consensus 154 ~~~p~illlDEPts~L---------D~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~--------~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 154 LREADVYIFDQPSSYL---------DVRERMNMAKAIRELL-K-NKYVIVVDHDLIV--------LDYLTDLIHIIYGE 213 (538)
T ss_dssp HSCCSEEEEESTTTTC---------CHHHHHHHHHHHHHHC-T-TSEEEEECSCHHH--------HHHHCSEEEEEEEE
T ss_pred HcCCCEEEEECCcccC---------CHHHHHHHHHHHHHHh-C-CCEEEEEEeChHH--------HHhhCCEEEEecCC
Confidence 3479999999999876 6666777777777774 3 8999999999855 88999999999753
No 88
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.74 E-value=8.5e-09 Score=115.75 Aligned_cols=134 Identities=16% Similarity=0.297 Sum_probs=85.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------c
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE-----------E 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~-----------~ 268 (583)
+++|++++|.|++|+|||||+..+++.+.+. ...+++++.+ +.++++.+ +++-.+ |
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~------~G~i~~~g~~i~~~~~~~~r~~---i~~v~Q~~~lf~~tv~en 448 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVD------RGQILVDGIDIRKIKRSSLRSS---IGIVLQDTILFSTTVKEN 448 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCS------EEEEEETTEEGGGSCHHHHHHH---EEEECTTCCCCSSBHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCC------CeEEEECCEEhhhCCHHHHHhc---eEEEeCCCccccccHHHH
Confidence 6899999999999999999999998887654 2345555533 22233222 221111 1
Q ss_pred cccC----CcccHHH---------H----------------------------HHHhcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFLY----SSTDIED---------I----------------------------VEKVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i~----~~~~~e~---------i----------------------------~~~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+.+. ++.++.+ . +...--.+|+++++||+++.+
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~L------ 522 (598)
T 3qf4_B 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV------ 522 (598)
T ss_dssp HHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC------
T ss_pred HhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC------
Confidence 1110 0001111 0 111112369999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++. .|.|+|+++|.... +++ ||.|+.|++++.
T Consensus 523 ---D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~--------~~~-~d~i~~l~~G~i 567 (598)
T 3qf4_B 523 ---DTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT--------IKN-ADLIIVLRDGEI 567 (598)
T ss_dssp ---CHHHHHHHHHHHHHHH--TTSEEEEESCCTTH--------HHH-CSEEEEECSSSE
T ss_pred ---CHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 4555566667777664 38999999998754 665 999999998764
No 89
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.72 E-value=9.9e-09 Score=114.74 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=83.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|++++|.|++|+|||||+..+++.+.+. ...+++++.+ +..+++. .+++-.+
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~------~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~tv~e 433 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVT------SGQILIDGHNIKDFLTGSLRN---QIGLVQQDNILFSDTVKE 433 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSCCS------EEEEEETTEEGGGSCHHHHHH---TEEEECSSCCCCSSBHHH
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCCCC------CcEEEECCEEhhhCCHHHHhh---heEEEeCCCccCcccHHH
Confidence 36899999999999999999999998887664 2345555432 2222221 2222111
Q ss_pred ccccCC-ccc---HHHHH-------------------------------------HHhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYS-STD---IEDIV-------------------------------------EKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~-~~~---~e~i~-------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+.. ..+ +.+.+ ...--.+|+++++||+++.+
T Consensus 434 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~L----- 508 (578)
T 4a82_A 434 NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL----- 508 (578)
T ss_dssp HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC-----
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC-----
Confidence 111100 001 11111 11111259999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++. .+.|+|+++|.... +++ ||.|+.|++++.
T Consensus 509 ----D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~--------~~~-~d~i~~l~~G~i 553 (578)
T 4a82_A 509 ----DLESESIIQEALDVLS--KDRTTLIVAHRLST--------ITH-ADKIVVIENGHI 553 (578)
T ss_dssp ----CHHHHHHHHHHHHHHT--TTSEEEEECSSGGG--------TTT-CSEEEEEETTEE
T ss_pred ----CHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 4444455566666553 37899999998754 655 999999998875
No 90
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.71 E-value=6e-09 Score=97.87 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=67.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHH------------HHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHH---Hhccccc--
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLL------------QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRA---DRMMIAT-- 266 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLll------------qia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~---~rl~i~~-- 266 (583)
+++|++++|.|+||+|||||+. .+.+.+.... ... .+.. ...+.+.... ...+...
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDE-----NDQ-TVTG-AAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSST-----TCG-GGHH-HHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcc-----cch-hhHH-HHHHHHHHHHHHHHhCCCeEEE
Confidence 4789999999999999999999 4544443321 000 0000 0011111111 1222211
Q ss_pred cccccCCcccHHHHHHH--hcccCCCEEEEccchhhhhhcccCC---CCCH----HHHHHHHHHHHHHHHcCCCcEEEec
Q 007957 267 EELFLYSSTDIEDIVEK--VQPLSPRALIIDSIQTVYLRGVAGS---AGGL----MQVKECTSALLRFAKKTNIPVLLAG 337 (583)
Q Consensus 267 ~~i~i~~~~~~e~i~~~--i~~~~p~lVVIDsi~~l~~~~~~~~---~g~~----~qvrei~~~L~~lAk~~g~tVIlis 337 (583)
+.... ......+.+.. ....+|+++++|++++.+....... .-.. .+..++...|.++.++ |.++|+++
T Consensus 79 ~~~~~-~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vt 156 (171)
T 4gp7_A 79 DATNV-QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYIL 156 (171)
T ss_dssp ESCCC-SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEE
T ss_pred ECCCC-CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEe
Confidence 11111 11112222222 3345799999999998775431110 0011 1334555555666666 99999999
Q ss_pred ccCC
Q 007957 338 HVTK 341 (583)
Q Consensus 338 H~~k 341 (583)
|...
T Consensus 157 H~~~ 160 (171)
T 4gp7_A 157 NSPE 160 (171)
T ss_dssp CSHH
T ss_pred CCHH
Confidence 9864
No 91
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.71 E-value=1.3e-08 Score=114.10 Aligned_cols=135 Identities=18% Similarity=0.290 Sum_probs=85.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|++++|.|++|+|||||+..+++.+.+. ...+++++.+ +..+++. .+++-.+
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~------~G~i~~~g~~i~~~~~~~~~~---~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA------SGTISLDGHDIRQLNPVWLRS---KIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSCCS------EEEEEETTEETTTBCHHHHHH---SEEEECSSCCCCSSBHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC------CcEEEECCEEhhhCCHHHHHh---ceEEEccCCcccCCCHHH
Confidence 36899999999999999999999999887653 2345555532 2222221 2221111
Q ss_pred ccccC-------CcccHHHHHHHh-------------------------------------cccCCCEEEEccchhhhhh
Q 007957 268 ELFLY-------SSTDIEDIVEKV-------------------------------------QPLSPRALIIDSIQTVYLR 303 (583)
Q Consensus 268 ~i~i~-------~~~~~e~i~~~i-------------------------------------~~~~p~lVVIDsi~~l~~~ 303 (583)
++.+. +...++++++.+ --.+|+++++||+++.+
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~L-- 514 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL-- 514 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSC--
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCC--
Confidence 11110 011111211111 11249999999999865
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 304 GVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 304 ~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++.+ +.|+|+++|.... +++ ||.|+.|++++.
T Consensus 515 -------D~~~~~~i~~~l~~~~~--~~tvi~itH~~~~--------~~~-~d~i~~l~~G~i 559 (595)
T 2yl4_A 515 -------DAENEYLVQEALDRLMD--GRTVLVIAHRLST--------IKN-ANMVAVLDQGKI 559 (595)
T ss_dssp -------CHHHHHHHHHHHHHHHT--TSEEEEECCCHHH--------HHH-SSEEEEEETTEE
T ss_pred -------CHHHHHHHHHHHHHHhc--CCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 45555667777777654 7899999998643 554 999999998764
No 92
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.71 E-value=9.8e-09 Score=115.02 Aligned_cols=134 Identities=22% Similarity=0.324 Sum_probs=85.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------c
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE-----------E 268 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~-----------~ 268 (583)
+++|++++|.|++|+|||||+..+++.+... ...+++++.+ +..+++. ++++-.+ |
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~------~G~i~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~tv~en 436 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPE------RGRVEVDELDVRTVKLKDLRG---HISAVPQETVLFSGTIKEN 436 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCS------EEEEEESSSBGGGBCHHHHHH---HEEEECSSCCCCSEEHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCC------CcEEEECCEEcccCCHHHHHh---heEEECCCCcCcCccHHHH
Confidence 6899999999999999999999998887653 3355666543 2223322 2222211 1
Q ss_pred cccCC-cccHHHHHH----------------------------------------HhcccCCCEEEEccchhhhhhcccC
Q 007957 269 LFLYS-STDIEDIVE----------------------------------------KVQPLSPRALIIDSIQTVYLRGVAG 307 (583)
Q Consensus 269 i~i~~-~~~~e~i~~----------------------------------------~i~~~~p~lVVIDsi~~l~~~~~~~ 307 (583)
+.+.. ..+.+++.+ ..--.+|+++++||+++.+
T Consensus 437 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~L------ 510 (587)
T 3qf4_A 437 LKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV------ 510 (587)
T ss_dssp HTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTS------
T ss_pred HhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccC------
Confidence 11110 011111111 1111259999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 308 SAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 308 ~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|......+.+.|.++. .+.|+|+++|.... +. .||+|++|++++.
T Consensus 511 ---D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~--------~~-~~d~i~vl~~G~i 555 (587)
T 3qf4_A 511 ---DPITEKRILDGLKRYT--KGCTTFIITQKIPT--------AL-LADKILVLHEGKV 555 (587)
T ss_dssp ---CHHHHHHHHHHHHHHS--TTCEEEEEESCHHH--------HT-TSSEEEEEETTEE
T ss_pred ---CHHHHHHHHHHHHHhC--CCCEEEEEecChHH--------HH-hCCEEEEEECCEE
Confidence 4555566667776653 48999999998743 54 7999999998875
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.70 E-value=5.9e-08 Score=113.52 Aligned_cols=143 Identities=21% Similarity=0.182 Sum_probs=88.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-------CH------------HHHHHHHHhcc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-------SV------------EQIGNRADRMM 263 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-------s~------------~qi~~R~~rl~ 263 (583)
-+.+|++++|.|+||+|||||++.+++....+.......++.|+..+. +. +.+..-++.++
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lg 536 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFG 536 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 368999999999999999999999985211110000112355554221 11 12223344555
Q ss_pred ccc----cccccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 264 IAT----EELFLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 264 i~~----~~i~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
+.. ..+.-++.....+ .+..+-..+|+++++||+++.+ |......+...|.+ .|.+||+++|
T Consensus 537 L~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~L---------D~~~~~~l~~~L~~----~g~tvIivSH 603 (986)
T 2iw3_A 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL---------DTVNVAWLVNYLNT----CGITSITISH 603 (986)
T ss_dssp CCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC---------CHHHHHHHHHHHHH----SCSEEEEECS
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCC---------CHHHHHHHHHHHHh----CCCEEEEEEC
Confidence 531 1112233222222 2223334589999999999866 55555666666654 5999999999
Q ss_pred cCCccCcCCccchheeccEEEEEeCcee
Q 007957 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 339 ~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.... +.++||.|++|++++.
T Consensus 604 dl~~--------l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 604 DSVF--------LDNVCEYIINYEGLKL 623 (986)
T ss_dssp CHHH--------HHHHCSEEEEEETTEE
T ss_pred CHHH--------HHHhCCEEEEEECCee
Confidence 8754 8899999999997764
No 94
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.65 E-value=1.7e-08 Score=103.21 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=82.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCC-CCccEEEEeCcc-----CHH-HHH----------HHHHhccccc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEE-----SVE-QIG----------NRADRMMIAT 266 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~-~~~~VLyis~Ee-----s~~-qi~----------~R~~rl~i~~ 266 (583)
+.+|++++|.|+||+|||||+..+++.+....|.. -++.+.|+.-+. +.. .+. ..++..++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 58999999999999999999999998876543200 011355654331 111 111 0111111110
Q ss_pred --ccc------------ccCCcccHHH-HHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHH-HHHHHcCC
Q 007957 267 --EEL------------FLYSSTDIED-IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL-LRFAKKTN 330 (583)
Q Consensus 267 --~~i------------~i~~~~~~e~-i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L-~~lAk~~g 330 (583)
+.+ .-++....++ .+...-..+|+++++||+++.+ |......+...+ .++. .+
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L---------D~~~~~~i~~~ll~~~~--~~ 209 (290)
T 2bbs_A 141 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL---------DVLTEKEIFESCVCKLM--AN 209 (290)
T ss_dssp HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC---------CHHHHHHHHHHCCCCCT--TT
T ss_pred HHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC---------CHHHHHHHHHHHHHHhh--CC
Confidence 000 0111111222 2222334579999999999865 444444555443 2332 38
Q ss_pred CcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 331 ~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+||+++|.... ++ .||.+++|+.++.
T Consensus 210 ~tviivtHd~~~--------~~-~~d~i~~l~~G~i 236 (290)
T 2bbs_A 210 KTRILVTSKMEH--------LK-KADKILILHEGSS 236 (290)
T ss_dssp SEEEEECCCHHH--------HH-HSSEEEEEETTEE
T ss_pred CEEEEEecCHHH--------HH-cCCEEEEEECCeE
Confidence 899999998643 55 4999999998764
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.60 E-value=6.1e-08 Score=89.23 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=62.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~ 285 (583)
+|+.++|.|++|+|||||+..++..+... +.+++|++..+.... +.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-----g~~~~~~~~~~~~~~---------------------------~~-- 80 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-----GKNAAYIDAASMPLT---------------------------DA-- 80 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-----TCCEEEEETTTSCCC---------------------------GG--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-----CCcEEEEcHHHhhHH---------------------------HH--
Confidence 78999999999999999999999988753 557999987642211 00
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCc-EEEecccC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP-VLLAGHVT 340 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~t-VIlisH~~ 340 (583)
..+++++|||+++.+. .. + .+.+..+.+...+.+.+ +|+++|..
T Consensus 81 ~~~~~lLilDE~~~~~---------~~-~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLG---------NE-E-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTCCC---------SH-H-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccccC---------hH-H-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 1358999999997631 11 1 23333444434455777 88888865
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.48 E-value=1.6e-07 Score=109.97 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=44.4
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++|+||+++.+ |......++. +.++.+.+||+++|.... +..+||.++.|++++.
T Consensus 918 ~~P~LLLLDEPT~gL---------D~~s~~~L~~----~L~~~g~tVIiISHD~e~--------v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 918 QRPHLIVLDEPTNYL---------DRDSLGALSK----ALKEFEGGVIIITHSAEF--------TKNLTEEVWAVKDGRM 976 (986)
T ss_dssp TCCSEEEEECGGGTC---------CHHHHHHHHH----HHHSCSSEEEEECSCHHH--------HTTTCCEEECCBTTBC
T ss_pred hCCCEEEEECCccCC---------CHHHHHHHHH----HHHHhCCEEEEEECCHHH--------HHHhCCEEEEEECCEE
Confidence 469999999999866 4434444444 445567899999998754 7889999999987653
No 97
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.47 E-value=1.3e-07 Score=114.80 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=44.7
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
+|+++|+||+++.+ |......+.+.|.+. ..|+|+|+++|.... +.+ ||+|++|++++.
T Consensus 1189 ~p~iLiLDEpTs~l---------D~~~~~~i~~~l~~~--~~~~tvi~isH~l~~--------i~~-~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1189 QPHILLLDEATSAL---------DTESEKVVQEALDKA--REGRTCIVIAHRLST--------IQN-ADLIVVIQNGKV 1247 (1284)
T ss_dssp CCSSEEEESCSSSC---------CHHHHHHHHHHHHHH--SSSSCEEEECSCTTG--------GGS-CSEEEEEETBEE
T ss_pred CCCEEEEeCCcccC---------CHHHHHHHHHHHHHh--CCCCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 59999999999765 444445555566553 348999999998854 655 999999998875
No 98
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.44 E-value=2.2e-07 Score=112.77 Aligned_cols=135 Identities=17% Similarity=0.320 Sum_probs=81.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccccccccccCC-----
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATEELFLYS----- 273 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~~i~i~~----- 273 (583)
-+++|++++|.|++|+|||||+..+++.+... ...+++++.+ +...++.+ +++-.++..+++
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~------~G~i~i~g~~i~~~~~~~~r~~---i~~v~Q~~~l~~~ti~e 482 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL------DGMVSIDGQDIRTINVRYLREI---IGVVSQEPVLFATTIAE 482 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSSCCS------EEEEEETTEEGGGSCHHHHHHH---EEEECSSCCCCSSCHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC------CeEEEECCEEHHhCCHHHHHhh---eEEEcCCCccCCccHHH
Confidence 46899999999999999999999998877653 2345555432 22222221 222111111100
Q ss_pred -------cccHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhccc
Q 007957 274 -------STDIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 274 -------~~~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
..+.+++. ...--.+|+++|+||+++.+
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~L----- 557 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL----- 557 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSS-----
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCC-----
Confidence 00011111 11111259999999999865
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
|....+.+...|..+. .|.|+|+++|.... +.+ ||.|++|++++.
T Consensus 558 ----D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~--------i~~-~d~i~vl~~G~i 602 (1284)
T 3g5u_A 558 ----DTESEAVVQAALDKAR--EGRTTIVIAHRLST--------VRN-ADVIAGFDGGVI 602 (1284)
T ss_dssp ----CHHHHHHHHHHHHHHH--TTSEEEEECSCHHH--------HTT-CSEEEECSSSCC
T ss_pred ----CHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--------HHc-CCEEEEEECCEE
Confidence 3333344444554433 38999999998743 655 999999988764
No 99
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.43 E-value=1e-07 Score=90.88 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH----HHHHHHHhccccccccccCCcccHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE----QIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~----qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
+|.+++++|++|+||||++++++..+... +.+++++....... ++. .++++....+.+ .+.+++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~-----g~~v~~~~~~~d~r~~~~~i~---s~~g~~~~~~~~---~~~~~~~ 70 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG-----KKKVAVFKPKIDSRYHSTMIV---SHSGNGVEAHVI---ERPEEMR 70 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-----TCEEEEEEEC-----CCCEEC---C----CEECEEE---SSGGGGG
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeeccccccCcccEE---ecCCCceeeEEE---CCHHHHH
Confidence 47899999999999999999999888753 56899887553211 010 111221111111 2233343
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEEE
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAVL 359 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~Vl 359 (583)
+.+. .++++|+|||+|.+. . +++..|..++.+ ++.|++.++.+.. +. +..+..+-..+|.|.
T Consensus 71 ~~~~-~~~dvviIDE~Q~~~----------~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~ 134 (184)
T 2orw_A 71 KYIE-EDTRGVFIDEVQFFN----------P----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVI 134 (184)
T ss_dssp GGCC-TTEEEEEECCGGGSC----------T----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEE
T ss_pred HHhc-CCCCEEEEECcccCC----------H----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheE
Confidence 3332 257899999999742 0 234455556665 9999999886531 11 122234555688886
Q ss_pred EEe
Q 007957 360 YME 362 (583)
Q Consensus 360 ~Le 362 (583)
.|.
T Consensus 135 ~l~ 137 (184)
T 2orw_A 135 KKK 137 (184)
T ss_dssp ECC
T ss_pred Eee
Confidence 664
No 100
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.42 E-value=3.4e-07 Score=104.04 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=42.2
Q ss_pred CCC--EEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPR--ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~--lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+ ++++||+++.+ |......++..|.++.+ .|.|||+++|.... +. .||.|+.|.
T Consensus 220 ~p~~~lLlLDEPtsgL---------D~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~--------~~-~~d~ii~l~ 277 (670)
T 3ux8_A 220 RLTGVLYVLDEPSIGL---------HQRDNDRLIATLKSMRD-LGNTLIVVEHDEDT--------ML-AADYLIDIG 277 (670)
T ss_dssp CCCSCEEEEECTTTTC---------CGGGHHHHHHHHHHHHH-TTCEEEEECCCHHH--------HH-HCSEEEEEC
T ss_pred CCCCCEEEEECCccCC---------CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------Hh-hCCEEEEec
Confidence 455 99999999876 33445666777777754 49999999998642 55 499999993
No 101
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.41 E-value=2.8e-08 Score=95.94 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 312 ~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
....+++...+.++.++.+.++|+++|...+ +..+||+|+++.+
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~--------~~~~~d~i~~l~~ 203 (207)
T 1znw_A 160 DVIQRRLDTARIELAAQGDFDKVVVNRRLES--------ACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHHHHHHHHGGGGSSEEEECSSHHH--------HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhhccCcEEEECCCHHH--------HHHHHHHHHHhcc
Confidence 3345566777777877779999999998755 7888999988753
No 102
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.41 E-value=1.4e-07 Score=114.68 Aligned_cols=137 Identities=17% Similarity=0.293 Sum_probs=82.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|+|++|+|||||+..+...+... ...+++++.+ +.+.++.++ ++-++
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~------~G~I~iDG~di~~i~~~~lR~~i---~~V~Qdp~LF~gTIre 1171 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTL------GGEIFIDGSEIKTLNPEHTRSQI---AIVSQEPTLFDCSIAE 1171 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCS------SSEEEETTEETTTBCHHHHHTTE---EEECSSCCCCSEEHHH
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCC------CCEEEECCEEhhhCCHHHHHhhe---EEECCCCEeeCccHHH
Confidence 36899999999999999999999998877654 2355666543 333443332 21111
Q ss_pred cccc-CC--cccHHHHHHHh----------------------------------------cccCCCEEEEccchhhhhhc
Q 007957 268 ELFL-YS--STDIEDIVEKV----------------------------------------QPLSPRALIIDSIQTVYLRG 304 (583)
Q Consensus 268 ~i~i-~~--~~~~e~i~~~i----------------------------------------~~~~p~lVVIDsi~~l~~~~ 304 (583)
|+.+ .+ +.+.+++.+++ --.+|+++|+||.++-.+.
T Consensus 1172 NI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~- 1250 (1321)
T 4f4c_A 1172 NIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT- 1250 (1321)
T ss_dssp HHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS-
T ss_pred HHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH-
Confidence 1111 00 01111221111 1125999999999876522
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceece
Q 007957 305 VAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368 (583)
Q Consensus 305 ~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~~ 368 (583)
..-+.+.+.|.+.. .++|+|+|+|.... +. .||.|++|++++..+
T Consensus 1251 --------~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--------i~-~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1251 --------ESEKVVQEALDRAR--EGRTCIVIAHRLNT--------VM-NADCIAVVSNGTIIE 1295 (1321)
T ss_dssp --------HHHHHHHHHHTTTS--SSSEEEEECSSSST--------TT-TCSEEEEESSSSEEE
T ss_pred --------HHHHHHHHHHHHHc--CCCEEEEeccCHHH--------HH-hCCEEEEEECCEEEE
Confidence 11223444444432 48999999998643 43 499999999887543
No 103
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.39 E-value=5.4e-07 Score=109.69 Aligned_cols=136 Identities=16% Similarity=0.252 Sum_probs=81.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhcccccc-----------
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMIATE----------- 267 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i~~~----------- 267 (583)
-+++|+.++|.|++|+|||||+..+++.+... ...+++++.+ +.+.++.+ +++-.+
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~------~G~I~idG~~i~~~~~~~lr~~---i~~v~Q~~~Lf~~TI~e 510 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVL------KGKITIDGVDVRDINLEFLRKN---VAVVSQEPALFNCTIEE 510 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCS------EEEEEETTEETTTSCHHHHHHH---EEEECSSCCCCSEEHHH
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccc------cCcccCCCccchhccHHHHhhc---ccccCCcceeeCCchhH
Confidence 36899999999999999999999998887664 2344444422 22233222 111111
Q ss_pred ccccCC-cccHHHHH----------------------------------------HHhcccCCCEEEEccchhhhhhccc
Q 007957 268 ELFLYS-STDIEDIV----------------------------------------EKVQPLSPRALIIDSIQTVYLRGVA 306 (583)
Q Consensus 268 ~i~i~~-~~~~e~i~----------------------------------------~~i~~~~p~lVVIDsi~~l~~~~~~ 306 (583)
|+.+-. ..+.+++. +..--.+|+++|+|++++..+.
T Consensus 511 NI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~--- 587 (1321)
T 4f4c_A 511 NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA--- 587 (1321)
T ss_dssp HHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT---
T ss_pred HHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH---
Confidence 111110 01111111 1111235999999999986522
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCceec
Q 007957 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFS 367 (583)
Q Consensus 307 ~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~~ 367 (583)
.... .+.+.|.++.+ |.|+|+++|.... +. .||.|++|++++..
T Consensus 588 ---~te~---~i~~~l~~~~~--~~T~iiiaHrls~--------i~-~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 588 ---ESEG---IVQQALDKAAK--GRTTIIIAHRLST--------IR-NADLIISCKNGQVV 631 (1321)
T ss_dssp ---TTHH---HHHHHHHHHHT--TSEEEEECSCTTT--------TT-TCSEEEEEETTEEE
T ss_pred ---HHHH---HHHHHHHHHhC--CCEEEEEcccHHH--------HH-hCCEEEEeeCCeee
Confidence 2333 34444555443 8899999998743 44 59999999988754
No 104
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.39 E-value=1e-06 Score=102.04 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
|+++|+||+++.+ +.....++...|.+++++ |.+||+++|.... + ..||.|+.|.
T Consensus 752 p~lLILDEPTsGL---------D~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~--------i-~~aDrii~L~ 806 (842)
T 2vf7_A 752 GTVYVLDEPTTGL---------HPADVERLQRQLVKLVDA-GNTVIAVEHKMQV--------V-AASDWVLDIG 806 (842)
T ss_dssp CEEEEEECTTTTC---------CHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH--------H-TTCSEEEEEC
T ss_pred CCEEEEECCCCCC---------CHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH--------H-HhCCEEEEEC
Confidence 6999999999865 666777788888887754 9999999998754 6 5799999995
No 105
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.33 E-value=2.8e-06 Score=87.25 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=34.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
+.+|++++|.|+||+||||++..+++.+... +++|++...+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-----~g~V~l~g~d 137 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGD 137 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeec
Confidence 4689999999999999999999999998874 4567776654
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.32 E-value=4.5e-07 Score=103.00 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=45.0
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+++++||+++.+ |.....+++..|.++.++ |.|||+++|.... ++ .||+|++|.
T Consensus 564 ~p~llllDEPt~~L---------D~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~--------~~-~~d~i~~l~ 619 (670)
T 3ux8_A 564 GRTLYILDEPTTGL---------HVDDIARLLDVLHRLVDN-GDTVLVIEHNLDV--------IK-TADYIIDLG 619 (670)
T ss_dssp SCEEEEEESTTTTC---------CHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH--------HT-TCSEEEEEE
T ss_pred CCcEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------HH-hCCEEEEec
Confidence 46799999999866 566677788888888655 9999999998743 54 599999993
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.32 E-value=2.1e-06 Score=82.46 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=83.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
.+|.+++++|+.|+||||.+++++..+... +.+|+++...-... ....-..++++......+.. .+++.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-----g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~---~~~i~~~ 77 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA-----KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN---SREILKY 77 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEEC-------CEEECTTSCEEECEEESS---STHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCC---HHHHHHH
Confidence 457899999999999999999999998753 67899886332111 00000122333222122212 2355555
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc--cCcCCccchheeccEEEEE
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS--GDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~--g~~ag~~~Le~~aD~Vl~L 361 (583)
+.. ++++|+|||.|.+- . +.+..|..++.. +++||+.+..+.- .-+.++..|-.+||.|..+
T Consensus 78 ~~~-~~dvViIDEaqfl~----------~----~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 78 FEE-DTEVIAIDEVQFFD----------D----EIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp CCT-TCSEEEECSGGGSC----------T----HHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred Hhc-cCCEEEEECCCCCC----------H----HHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 442 47999999998641 1 224455555655 9999999876532 1234566788899999877
Q ss_pred e
Q 007957 362 E 362 (583)
Q Consensus 362 e 362 (583)
.
T Consensus 142 ~ 142 (191)
T 1xx6_A 142 Q 142 (191)
T ss_dssp C
T ss_pred e
Confidence 5
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.29 E-value=2.2e-06 Score=83.50 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=81.1
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH----HHHHHHHHhccccccccccCCcccHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV----EQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~----~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
.+|.+.+++|+.|+||||.+++++..+... +.+|+++...-.. ..+. .++++....+.+... +++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-----g~kVli~k~~~d~R~ge~~i~---s~~g~~~~a~~~~~~---~~~ 94 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA-----KQHAIVFKPCIDNRYSEEDVV---SHNGLKVKAVPVSAS---KDI 94 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEECC--------------------CCEEECSSG---GGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEeccCCcchHHHHH---hhcCCeeEEeecCCH---HHH
Confidence 468999999999999999999999998764 6789988643221 1222 333433222222111 233
Q ss_pred HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEE
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAV 358 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~V 358 (583)
.+.+. .++++|+|||.|.+- ..+ +..|..++.+ +++||+.+..+.- +. +.++..|-.+||.|
T Consensus 95 ~~~~~-~~~dvViIDEaQF~~----------~~~----V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~V 158 (214)
T 2j9r_A 95 FKHIT-EEMDVIAIDEVQFFD----------GDI----VEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHV 158 (214)
T ss_dssp GGGCC-SSCCEEEECCGGGSC----------TTH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred HHHHh-cCCCEEEEECcccCC----------HHH----HHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccE
Confidence 33333 248999999999741 112 2344455544 9999999886543 22 34556777889999
Q ss_pred EEEeC
Q 007957 359 LYMEG 363 (583)
Q Consensus 359 l~Le~ 363 (583)
..|..
T Consensus 159 tel~a 163 (214)
T 2j9r_A 159 TKLQA 163 (214)
T ss_dssp EECCC
T ss_pred Eeeee
Confidence 88864
No 109
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.26 E-value=5e-06 Score=87.39 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=35.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.+|++++|.|+||+||||++..+++.+... +++|++...+-
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-----~G~V~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcccc-----CCEEEEecccc
Confidence 4589999999999999999999999998864 45777776543
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.24 E-value=2.1e-06 Score=82.52 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=82.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH---HHHHHHHHhccccccccccCCcccHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV---EQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~---~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
..|.+..|+|+.|+||||.+++.+.+.... +.+|+|+..+-+. +.+..+. +...+.+.+-...+ +.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-----~~kvl~~kp~~D~R~~~~i~S~~---g~~~~A~~~~~~~d---~~ 86 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYAKDTRYSSSFCTHD---RNTMEALPACLLRD---VA 86 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEETTCCCGGGSCCHHH---HHHSEEEEESSGGG---GH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEccccCccchhhhhhcc---CCcccceecCCHHH---HH
Confidence 358999999999999999999999888764 6789999865221 2222222 21111112222222 22
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEEE
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAVL 359 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~Vl 359 (583)
+.. .+.++|+||++|-+ . + +.+++ ..++ +.|++||+.+..+.- +. ..+...|-.+||.|.
T Consensus 87 ~~~--~~~DvIlIDEaQFf--k-------~---~ve~~---~~L~-~~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~ 148 (195)
T 1w4r_A 87 QEA--LGVAVIGIDEGQFF--P-------D---IVEFC---EAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 148 (195)
T ss_dssp HHH--HTCSEEEESSGGGC--T-------T---HHHHH---HHHH-HTTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEE
T ss_pred Hhc--cCCCEEEEEchhhh--H-------H---HHHHH---HHHH-HCCCeEEEEecccccccccchhHHHHHHhcCeEE
Confidence 222 24799999999965 1 1 22333 4444 579999999877643 22 345667778999999
Q ss_pred EEe
Q 007957 360 YME 362 (583)
Q Consensus 360 ~Le 362 (583)
-|.
T Consensus 149 kl~ 151 (195)
T 1w4r_A 149 KLT 151 (195)
T ss_dssp ECC
T ss_pred Eee
Confidence 876
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.24 E-value=2.8e-06 Score=90.37 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=45.1
Q ss_pred cCC--CEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 287 LSP--RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 287 ~~p--~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.+| +++|+||+++.+ +......+...|.+++ + +.+||+++|... +...||.++.|++
T Consensus 312 ~~~~~~~LlLDEpt~~L---------D~~~~~~l~~~L~~l~-~-~~~vi~itH~~~---------~~~~~d~i~~l~k 370 (415)
T 4aby_A 312 LGADTPSVVFDEVDAGI---------GGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQ---------IAARAHHHYKVEK 370 (415)
T ss_dssp HCCSSSEEEESSTTTTC---------CHHHHHHHHHHHHHHT-T-TSEEEEECSCHH---------HHTTCSEEEEEEE
T ss_pred hCCCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHh-C-CCEEEEEeCcHH---------HHhhcCeEEEEEE
Confidence 357 999999998865 5666777888888886 3 899999999862 3346999999943
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.22 E-value=4.7e-06 Score=87.54 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=77.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
..+|.+++|.|++|+|||||+..+++.+.... ++.++. .|++.+... +.....+....+ .....++.+.+..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~----~~~i~t--~ed~~e~~~-~~~~~~v~q~~~-~~~~~~~~~~La~ 191 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK----YHHILT--IEDPIEFVH-ESKKCLVNQREV-HRDTLGFSEALRS 191 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC----CCEEEE--EESSCCSCC-CCSSSEEEEEEB-TTTBSCHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCC----CcEEEE--ccCcHHhhh-hccccceeeeee-ccccCCHHHHHHH
Confidence 36778999999999999999999999887641 234433 333322100 000000110011 1122456667777
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEE
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
+-..+|+++++||+.. .+.+..+.+.+. .|.+||+++|.... + ..+|+++.|
T Consensus 192 aL~~~PdvillDEp~d----------------~e~~~~~~~~~~-~G~~vl~t~H~~~~--------~-~~~dRli~l 243 (356)
T 3jvv_A 192 ALREDPDIILVGEMRD----------------LETIRLALTAAE-TGHLVFGTLHTTSA--------A-KTIDRVVDV 243 (356)
T ss_dssp HTTSCCSEEEESCCCS----------------HHHHHHHHHHHH-TTCEEEEEESCSSH--------H-HHHHHHHHT
T ss_pred HhhhCcCEEecCCCCC----------------HHHHHHHHHHHh-cCCEEEEEEccChH--------H-HHHHHHhhh
Confidence 7778999999999962 133444455554 59999999999853 3 456666655
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.18 E-value=9.7e-06 Score=84.20 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=43.1
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhccc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRMMI 264 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl~i 264 (583)
.+|++++|.|+||+||||++..+++.+.+. ++.|++...+. ..+|+..+..++++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-----~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-----GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-----CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 579999999999999999999999998875 56788877553 23456666666664
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.18 E-value=1.3e-05 Score=80.58 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=73.8
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccc-cccccccCC
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYS 273 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i-~~~~i~i~~ 273 (583)
-|+.+. +.+|++++|.|++|+|||||+..+++.+.... .+.+++.. +. .+.+.. ....+ ....+- +.
T Consensus 16 vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~----~G~I~~~g-~~-i~~~~~--~~~~~v~q~~~g-l~ 83 (261)
T 2eyu_A 16 KVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYINQTK----SYHIITIE-DP-IEYVFK--HKKSIVNQREVG-ED 83 (261)
T ss_dssp HHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHC----CCEEEEEE-SS-CCSCCC--CSSSEEEEEEBT-TT
T ss_pred HHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhCCCCC----CCEEEEcC-Cc-ceeecC--CcceeeeHHHhC-CC
Confidence 345544 78999999999999999999999999887631 23454433 21 100000 00000 000000 11
Q ss_pred cccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchhe
Q 007957 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353 (583)
Q Consensus 274 ~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~ 353 (583)
...+...+...-..+|+++++||++ +...+.. +.+.+ +.|.+|++++|... ...
T Consensus 84 ~~~l~~~la~aL~~~p~illlDEp~------------D~~~~~~----~l~~~-~~g~~vl~t~H~~~---------~~~ 137 (261)
T 2eyu_A 84 TKSFADALRAALREDPDVIFVGEMR------------DLETVET----ALRAA-ETGHLVFGTLHTNT---------AID 137 (261)
T ss_dssp BSCHHHHHHHHHHHCCSEEEESCCC------------SHHHHHH----HHHHH-HTTCEEEEEECCSS---------HHH
T ss_pred HHHHHHHHHHHHhhCCCEEEeCCCC------------CHHHHHH----HHHHH-ccCCEEEEEeCcch---------HHH
Confidence 2334444444444589999999996 1222222 22334 45899999999863 344
Q ss_pred eccEEEEEe
Q 007957 354 IVDAVLYME 362 (583)
Q Consensus 354 ~aD~Vl~Le 362 (583)
.+|+++.|.
T Consensus 138 ~~dri~~l~ 146 (261)
T 2eyu_A 138 TIHRIVDIF 146 (261)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHhhhc
Confidence 566665553
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.16 E-value=1.1e-05 Score=82.81 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=69.6
Q ss_pred hhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcc
Q 007957 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSST 275 (583)
Q Consensus 196 LD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~ 275 (583)
+-+++...-..+..++|.|+||+|||||+..++..+... +.+++|++.++...++...... .
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~-------------~ 87 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-----GYRVIYSSADDFAQAMVEHLKK-------------G 87 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-----TCCEEEEEHHHHHHHHHHHHHH-------------T
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEHHHHHHHHHHHHHc-------------C
Confidence 333443322345679999999999999999999988763 5689999876544333322211 1
Q ss_pred cHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 276 ~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
..+.+.... .++++|+||+++.+.. +.....++...+..+ .+.+..+|++++..
T Consensus 88 ~~~~~~~~~--~~~~vL~iDEi~~l~~--------~~~~~~~l~~~l~~~-~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 88 TINEFRNMY--KSVDLLLLDDVQFLSG--------KERTQIEFFHIFNTL-YLLEKQIILASDRH 141 (324)
T ss_dssp CHHHHHHHH--HTCSEEEEECGGGGTT--------CHHHHHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred cHHHHHHHh--cCCCEEEEcCcccccC--------ChHHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 122333332 2489999999987631 212223344333333 34567777777543
No 116
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.16 E-value=7e-06 Score=95.60 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
|+++|+||+++.+ +......++..|.++++ .|.+||+++|.... ++ .||.|+.|.
T Consensus 867 p~lLILDEPTsGL---------D~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~--------i~-~aDrIivL~ 921 (972)
T 2r6f_A 867 RTLYILDEPTTGL---------HVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV--------IK-TADYIIDLG 921 (972)
T ss_dssp CEEEEEECTTTTC---------CHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH--------HT-TCSEEEEEC
T ss_pred CCEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH--------HH-hCCEEEEEc
Confidence 5999999999865 66677788888888765 49999999998743 54 699999994
No 117
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.14 E-value=1.8e-05 Score=92.31 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=45.5
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
+|+++|+||+++.+ +......++..|.++++ .|.|||+++|.... +.. ||.|+.|.
T Consensus 826 ~p~LLILDEPTsGL---------D~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~--------i~~-ADrIivLg 881 (916)
T 3pih_A 826 GRTLYILDEPTVGL---------HFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDV--------IKN-ADHIIDLG 881 (916)
T ss_dssp SSEEEEEESTTTTC---------CHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH--------HTT-CSEEEEEE
T ss_pred CCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--------HHh-CCEEEEec
Confidence 36899999999876 66677788888888865 49999999998743 655 99999994
No 118
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.14 E-value=6.5e-07 Score=93.17 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=67.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC--CcccHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY--SSTDIEDIV 281 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~--~~~~~e~i~ 281 (583)
+.+|++++|.|++|+|||||+..+++.+... ...+.+.+... +. +......+.++ ........+
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~------~g~i~i~~~~e---~~-----~~~~~~~i~~~~ggg~~~r~~l 233 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE------ERIISIEDTEE---IV-----FKHHKNYTQLFFGGNITSADCL 233 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTT------SCEEEEESSCC---CC-----CSSCSSEEEEECBTTBCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCC------CcEEEECCeec---cc-----cccchhEEEEEeCCChhHHHHH
Confidence 3688999999999999999999999887653 34556654321 00 00001112222 334455555
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
...-..+|+++++||++.. ++...|..+. ..+.++|+++|...
T Consensus 234 a~aL~~~p~ilildE~~~~----------------e~~~~l~~~~-~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELRSS----------------EAYDFYNVLC-SGHKGTLTTLHAGS 276 (330)
T ss_dssp HHHTTSCCSEEEECCCCST----------------HHHHHHHHHH-TTCCCEEEEEECSS
T ss_pred HHHhhhCCCEEEEcCCChH----------------HHHHHHHHHh-cCCCEEEEEEcccH
Confidence 5556678999999999741 2334444443 33557999999874
No 119
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.14 E-value=9.1e-06 Score=94.97 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=45.0
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
|+++|+||+++.+ +......+...|.++++ .|.+||+++|.... ++ .||.|+.|.
T Consensus 885 p~lLILDEPTsGL---------D~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~--------i~-~aDrIivL~ 939 (993)
T 2ygr_A 885 RTVYILDEPTTGL---------HFDDIRKLLNVINGLVD-KGNTVIVIEHNLDV--------IK-TSDWIIDLG 939 (993)
T ss_dssp SEEEEEESTTTTC---------CHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH--------HT-TCSEEEEEE
T ss_pred CCEEEEECCCCCC---------CHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH--------HH-hCCEEEEEC
Confidence 5999999999865 66677788888888765 49999999998743 54 699999995
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.14 E-value=1.2e-05 Score=79.07 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH---HHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV---EQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~---~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
.|.+.+++|+.|+||||.+++.+..+... +.+|+++...-+. ..+.. ++|+....+.+.... ++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-----g~kvli~kp~~D~Ryg~~i~s---r~G~~~~a~~i~~~~---di~~ 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYAKDTRYSSSFCT---HDRNTMEALPACLLR---DVAQ 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT-----TCCEEEEEETTCCCC--------------CEEEEESSGG---GGHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC-----CCeEEEEeecCCccchHHHHh---hcCCeeEEEecCCHH---HHHH
Confidence 48999999999999999999999988764 6788888633211 33333 334433322232222 2444
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEEEE
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAVLY 360 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~Vl~ 360 (583)
.+ .++++|+|||+|.+. + +.+++ +++.+.|+.||+.++.+.- +. ..++..|-.+||.|-.
T Consensus 87 ~~--~~~dvViIDEaQF~~---------~---v~el~----~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vte 148 (234)
T 2orv_A 87 EA--LGVAVIGIDEGQFFP---------D---IVEFC----EAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVK 148 (234)
T ss_dssp HH--TTCSEEEESSGGGCT---------T---HHHHH----HHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEE
T ss_pred Hh--ccCCEEEEEchhhhh---------h---HHHHH----HHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEe
Confidence 44 357999999999642 1 33333 3334479999999887543 22 3456677789999988
Q ss_pred Ee
Q 007957 361 ME 362 (583)
Q Consensus 361 Le 362 (583)
|.
T Consensus 149 lk 150 (234)
T 2orv_A 149 LT 150 (234)
T ss_dssp CC
T ss_pred ee
Confidence 75
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.12 E-value=5.7e-06 Score=80.03 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=65.7
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCC
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS 273 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~ 273 (583)
..+.+.+.++ .+..++|.|+||+|||||+..++..+... +.+++|++..+....+.
T Consensus 41 ~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~-----~~~~~~~~~~~~~~~~~----------------- 96 (242)
T 3bos_A 41 GALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANEL-----ERRSFYIPLGIHASIST----------------- 96 (242)
T ss_dssp HHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEGGGGGGSCG-----------------
T ss_pred HHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEHHHHHHHHH-----------------
Confidence 4455555443 57789999999999999999999988764 56899998754322110
Q ss_pred cccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCc-EEEecccC
Q 007957 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP-VLLAGHVT 340 (583)
Q Consensus 274 ~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~t-VIlisH~~ 340 (583)
+++.. ..++.+||||+++.+.. .......+...+...... +.. +|++++..
T Consensus 97 -----~~~~~--~~~~~vliiDe~~~~~~--------~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~ 148 (242)
T 3bos_A 97 -----ALLEG--LEQFDLICIDDVDAVAG--------HPLWEEAIFDLYNRVAEQ-KRGSLIVSASAS 148 (242)
T ss_dssp -----GGGTT--GGGSSEEEEETGGGGTT--------CHHHHHHHHHHHHHHHHH-CSCEEEEEESSC
T ss_pred -----HHHHh--ccCCCEEEEeccccccC--------CHHHHHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence 00000 13478999999987531 221123333444443333 444 77766543
No 122
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.11 E-value=6.9e-07 Score=86.88 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=28.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~ 236 (583)
+.+|++++|.|+||+|||||+..+++. ....+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 488999999999999999999999998 76543
No 123
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.08 E-value=6e-06 Score=78.42 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH-HHHHHHHHhcccc-ccccccC-CcccHHHHHHHhc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV-EQIGNRADRMMIA-TEELFLY-SSTDIEDIVEKVQ 285 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~-~qi~~R~~rl~i~-~~~i~i~-~~~~~e~i~~~i~ 285 (583)
+++|.|.+|+|||+|+.+++.. +.+++|+.++... .+...|..+.... ......+ .+.++.+. +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~---------~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~---l~ 68 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD---------APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL---IT 68 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS---------CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT---SC
T ss_pred CEEEECCCCCcHHHHHHHHHhc---------CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH---HH
Confidence 3789999999999999998743 2469999987642 2333333221111 1112112 12333333 32
Q ss_pred cc-C-CCEEEEccchhhhhhcccC-----CC--CC----HHHHHHHHHHHHHHHHcCCCcEEEecccCCccCc-CCc---
Q 007957 286 PL-S-PRALIIDSIQTVYLRGVAG-----SA--GG----LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI-AGP--- 348 (583)
Q Consensus 286 ~~-~-p~lVVIDsi~~l~~~~~~~-----~~--g~----~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~-ag~--- 348 (583)
.. . .++|+||+++..+...+.. .. .+ ...+.+-+..|....++...++|+|+...-.|-. .++
T Consensus 69 ~~~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsNEVG~GiVP~~~~~R 148 (180)
T 1c9k_A 69 ADLAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLAR 148 (180)
T ss_dssp TTSCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCCSSCCCSSHHHH
T ss_pred hhcccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEccccCCCCCCCHHHH
Confidence 22 2 3799999998876554321 11 12 1223444555555455567777777655433321 111
Q ss_pred ----------cchheeccEEEEEeCc
Q 007957 349 ----------RVLEHIVDAVLYMEGE 364 (583)
Q Consensus 349 ----------~~Le~~aD~Vl~Le~~ 364 (583)
..+...||.|.++-.+
T Consensus 149 ~frD~~G~lnq~lA~~ad~V~lvvaG 174 (180)
T 1c9k_A 149 HFRDIAGRVNQRLAAAADEVWLVVSG 174 (180)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECC
Confidence 3677789999887644
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.08 E-value=1.4e-05 Score=87.00 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=35.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.+|++++|.|+||+|||||+..+++.+... ++.|++...+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-----~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-----GKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc-----CCeEEEecCcc
Confidence 5689999999999999999999999998764 56788776654
No 125
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.05 E-value=3.1e-05 Score=79.84 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=42.1
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEE--EEEeCc
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAV--LYMEGE 364 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~V--l~Le~~ 364 (583)
.+|+++++||+++.+ +......+...|.+++ .+.+||+++|.. + +..+||.+ +.+.++
T Consensus 240 ~~~~~lllDEp~~~L---------D~~~~~~l~~~l~~~~--~~~~vi~~tH~~-~--------~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 240 KPSPFYVLDEVDSPL---------DDYNAERFKRLLKENS--KHTQFIVITHNK-I--------VMEAADLLHGVTMVNG 299 (322)
T ss_dssp SCCSEEEEESCCSSC---------CHHHHHHHHHHHHHHT--TTSEEEEECCCT-T--------GGGGCSEEEEEEESSS
T ss_pred CCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHhc--CCCeEEEEECCH-H--------HHhhCceEEEEEEeCC
Confidence 357999999998765 5556667777777763 378999999984 3 45578876 566543
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=3.7e-06 Score=80.13 Aligned_cols=105 Identities=15% Similarity=0.288 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..++|.|+||+|||+|+..++..+... +.+++|++..+-..++... + ....+..+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~-- 114 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-----NVSSLIVYVPELFRELKHS-----L--------QDQTMNEKLDYIK-- 114 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-----TCCEEEEEHHHHHHHHHHC----------------CCCHHHHHHHH--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEhHHHHHHHHHH-----h--------ccchHHHHHHHhc--
Confidence 678999999999999999999888764 5689998865433332211 0 1112233333333
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
++++||||++...... .. ...+++..+.+.....+..+|++++..
T Consensus 115 ~~~~lilDei~~~~~~-------~~-~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMS-------SW-VRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HSSEEEEEEECCC----------CC-GGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCEEEEcCCCCCcCC-------HH-HHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 3579999999653211 00 011233333333334467788887755
No 127
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.04 E-value=7.2e-07 Score=104.44 Aligned_cols=136 Identities=16% Similarity=0.129 Sum_probs=70.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCCc--ccHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYSS--TDIEDI 280 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~~--~~~e~i 280 (583)
+.+|++++|.|+||+|||||+++++........ | .|+..+...- .+..-+.+++....-..-.+. ....++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~---G---~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQI---G---CFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLET 732 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHH---T---CCBSEEEEEEECCSEEEEECC---------CHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc---C---CccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHH
Confidence 467899999999999999999999554322100 1 0110000000 000000111111000000010 011222
Q ss_pred HHHhc-ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHH-HHHcCCCcEEEecccCCccCcCCccchheeccEE
Q 007957 281 VEKVQ-PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR-FAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAV 358 (583)
Q Consensus 281 ~~~i~-~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~-lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~V 358 (583)
...+. ..+|++|++||++... +......++..+.+ ++++.|+++|+++|... +..++|.+
T Consensus 733 a~il~~a~~~sLlLLDEp~~Gl---------D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e---------l~~lad~~ 794 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGT---------STYDGFGLAWAISEYIATKIGAFCMFATHFHE---------LTALANQI 794 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSS---------CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG---------GGGGGGTC
T ss_pred HHHHHhccCCcEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH---------HHHHhccc
Confidence 22221 3578999999998754 44445555444444 45557999999999852 55677776
Q ss_pred EEEeC
Q 007957 359 LYMEG 363 (583)
Q Consensus 359 l~Le~ 363 (583)
..+..
T Consensus 795 ~~v~n 799 (934)
T 3thx_A 795 PTVNN 799 (934)
T ss_dssp TTEEE
T ss_pred ceeEe
Confidence 55543
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.04 E-value=2.3e-05 Score=81.69 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHH-HHhccccccccccCCc-ccHHHHHHHh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNR-ADRMMIATEELFLYSS-TDIEDIVEKV 284 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R-~~rl~i~~~~i~i~~~-~~~e~i~~~i 284 (583)
.++|.|+||+|||||+..++..+.... +..++|++... +..++... +..++....... .+. .-++.+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT----TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG-LSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC----CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC-CCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc----CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCC-CCHHHHHHHHHHHH
Confidence 899999999999999999998876520 35788988543 33343333 334433211000 011 1123333333
Q ss_pred cc-cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH--cCCCcEEEecccC
Q 007957 285 QP-LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK--KTNIPVLLAGHVT 340 (583)
Q Consensus 285 ~~-~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk--~~g~tVIlisH~~ 340 (583)
.. .++.+||||+++.+ +...+..+...+..+.. ..++++|+++|..
T Consensus 121 ~~~~~~~vlilDE~~~l----------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNL----------APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHTTCCEEEEEETGGGS----------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred hhcCCeEEEEEECcccc----------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 33 35889999999875 22223333333322222 1578888887754
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.02 E-value=1e-05 Score=81.27 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=52.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
|+.++.-++|.|+||+|||+|+..++..+. .++++++..+-... ..-.....+..+..
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~--------~~~~~v~~~~~~~~--------------~~~~~~~~~~~~~~ 104 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETN--------ATFIRVVGSELVKK--------------FIGEGASLVKDIFK 104 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTT--------CEEEEEEGGGGCCC--------------STTHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC--------CCEEEEehHHHHHh--------------ccchHHHHHHHHHH
Confidence 566777899999999999999999987653 35777765321100 00001122445556
Q ss_pred HhcccCCCEEEEccchhhhh
Q 007957 283 KVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~ 302 (583)
.+....|.+|+||++..+..
T Consensus 105 ~~~~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 105 LAKEKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp HHHHTCSEEEEEETTHHHHB
T ss_pred HHHHcCCeEEEEECHHHhcc
Confidence 66667889999999998754
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=98.02 E-value=1.7e-05 Score=77.33 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=83.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH-HHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE-QIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~-qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
..|.+.+|+|+.|+||||.+++.+..+... +.+|+.+...-+.. ....-..+.|+..+.+.+....+ +.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~-----g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~d---i~~~ 97 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA-----KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASE---IMTH 97 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEEC-----------CBTTBCCEEEEESSGGG---GGGS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc-----CCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHH---HHHH
Confidence 458899999999999999888888777653 56788876543222 11222345555443333333322 2222
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCc-cC-cCCccchheeccEEEEE
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS-GD-IAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~-g~-~ag~~~Le~~aD~Vl~L 361 (583)
+ ..++++|+|||.|.+- . +++..|.+++ +.|++|++.+=.+.- +. +.+...|-.+||.|.-|
T Consensus 98 i-~~~~dvV~IDEaQFf~----------~----~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl 161 (219)
T 3e2i_A 98 D-LTNVDVIGIDEVQFFD----------D----EIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKL 161 (219)
T ss_dssp C-CTTCSEEEECCGGGSC----------T----HHHHHHHHHH-HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEE
T ss_pred H-hcCCCEEEEechhcCC----------H----HHHHHHHHHH-HCCCEEEEeecccccccCCCccHHHHHHhcceEEEe
Confidence 2 2468999999999642 1 4556666777 579999998754432 22 34556777889999998
Q ss_pred e
Q 007957 362 E 362 (583)
Q Consensus 362 e 362 (583)
.
T Consensus 162 ~ 162 (219)
T 3e2i_A 162 Q 162 (219)
T ss_dssp C
T ss_pred e
Confidence 6
No 131
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.01 E-value=2.8e-05 Score=83.58 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=68.3
Q ss_pred hhhhHHhcCCc-------cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc
Q 007957 194 NEVARVLGGGL-------VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM 262 (583)
Q Consensus 194 ~eLD~vLgGGi-------~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl 262 (583)
++|.++|+++- .++.+++++|++|+||||++..++..+... +.+|++++.+. ..+++.......
T Consensus 77 ~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-----G~kVllv~~D~~r~~a~eqL~~~~~~~ 151 (433)
T 3kl4_A 77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKR-----GYKVGLVAADVYRPAAYDQLLQLGNQI 151 (433)
T ss_dssp HHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEecCccchhHHHHHHHHHHhc
Confidence 57777776642 247899999999999999999999999874 78999999774 234555555655
Q ss_pred cccccccccCCccc----HHHHHHHhcccCCCEEEEccchh
Q 007957 263 MIATEELFLYSSTD----IEDIVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 263 ~i~~~~i~i~~~~~----~e~i~~~i~~~~p~lVVIDsi~~ 299 (583)
+++.... ....+ ..+.++.+...++++||||....
T Consensus 152 gv~~~~~--~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 152 GVQVYGE--PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp TCCEECC--TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred CCceeec--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 5542211 11122 23344555556899999998853
No 132
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.01 E-value=5.2e-05 Score=77.92 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=63.5
Q ss_pred hhhhHHhcCC------ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhcc
Q 007957 194 NEVARVLGGG------LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMM 263 (583)
Q Consensus 194 ~eLD~vLgGG------i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~ 263 (583)
++|-+.|+.. ..+|.+++|.|++|+||||++..+|..+... +++|++++.+.. .+|+...+++++
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-----g~kV~lv~~D~~r~~a~eqL~~~~~~~g 159 (306)
T 1vma_A 85 EIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-----GKSVVLAAADTFRAAAIEQLKIWGERVG 159 (306)
T ss_dssp HHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-----CCEEEEEccccccHHHHHHHHHHHHHcC
Confidence 4555555432 3578999999999999999999999999874 678999987643 234444455555
Q ss_pred ccccccccCCcccHHH----HHHHhcccCCCEEEEccch
Q 007957 264 IATEELFLYSSTDIED----IVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 264 i~~~~i~i~~~~~~e~----i~~~i~~~~p~lVVIDsi~ 298 (583)
++. +...+..+..+ .+......++++||||++.
T Consensus 160 l~~--~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 160 ATV--ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp CEE--ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CcE--EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 432 11111222222 2222334579999999885
No 133
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.00 E-value=1.9e-05 Score=83.11 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=48.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeCcee
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~~~~ 366 (583)
.+|+++++||+++.+ |......++..|.++.+ .|.+||+++|... +...+|.++.|++++.
T Consensus 302 ~~p~~lllDEpt~~L---------D~~~~~~~~~~l~~l~~-~g~tvi~itH~~~---------~~~~~d~~~~l~~G~i 362 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSL---------DTENKEKIASVLKELER-LNKVIVFITHDRE---------FSEAFDRKLRITGGVV 362 (365)
T ss_dssp TTCCEEEEESCCTTS---------CHHHHHHHHHHHHGGGG-SSSEEEEEESCHH---------HHTTCSCEEEEETTEE
T ss_pred CCCCEEEEeCCCccC---------CHHHHHHHHHHHHHHHh-CCCEEEEEecchH---------HHHhCCEEEEEECCEE
Confidence 589999999999865 56667777777777754 5999999999863 3456899999988764
No 134
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=7.3e-06 Score=87.16 Aligned_cols=120 Identities=26% Similarity=0.391 Sum_probs=71.9
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-C
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-Y 272 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~ 272 (583)
+++-+-+ |+.+..-++|+||||+|||+|+..+|.... .+.+++++.+-.. -++ -
T Consensus 171 pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~s---------------k~vGe 225 (405)
T 4b4t_J 171 PELFESL--GIAQPKGVILYGPPGTGKTLLARAVAHHTD--------CKFIRVSGAELVQ---------------KYIGE 225 (405)
T ss_dssp HHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHHHHT--------CEEEEEEGGGGSC---------------SSTTH
T ss_pred HHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHHhhC--------CCceEEEhHHhhc---------------cccch
Confidence 3444444 556555699999999999999999998764 3577777542110 000 0
Q ss_pred CcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH----HcCCCcEEEecc
Q 007957 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA----KKTNIPVLLAGH 338 (583)
Q Consensus 273 ~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA----k~~g~tVIlisH 338 (583)
++..+.++.+......|.+|+||++.++......+..+........+..|.... ...++.||..+.
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 123456777778888999999999998865433222222233334444444333 233444444443
No 135
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.99 E-value=3.1e-05 Score=83.47 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+..++|+|+||+|||||+..++..+..... +.+++|++.+....++...+.. .....+.....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~---~~~v~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~- 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP---DLRVMYITSEKFLNDLVDSMKE-------------GKLNEFREKYR- 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCC---SSCEEEEEHHHHHHHHHHHHHT-------------TCHHHHHHHHT-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC---CCeEEEeeHHHHHHHHHHHHHc-------------ccHHHHHHHhc-
Confidence 567899999999999999999998865421 5679999876543333322211 11223332221
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.++++|+||+++.+.. ......++...+..+ .+.+..+|+++|..
T Consensus 193 ~~~~vL~IDEi~~l~~--------~~~~q~~l~~~l~~l-~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIG--------KTGVQTELFHTFNEL-HDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSS--------CHHHHHHHHHHHHHH-HTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccC--------ChHHHHHHHHHHHHH-HHCCCeEEEEECCC
Confidence 3689999999987641 222333444444443 45678888887764
No 136
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=1e-05 Score=82.55 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=55.5
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
-|+.++..++|.|+||+|||+|+..++..+. .+.+++++.+ +.... ++ .....+..+.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--------~~~i~v~~~~----l~~~~--~g--------~~~~~~~~~f 101 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKGPE----LLTMW--FG--------ESEANVREIF 101 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--------CEEEEECHHH----HHHHH--HT--------TCTTHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--------CCEEEEEhHH----HHhhh--cC--------chHHHHHHHH
Confidence 3678899999999999999999999987653 3567776432 21111 11 1233456666
Q ss_pred HHhcccCCCEEEEccchhhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~ 302 (583)
+......|.+++||++..+..
T Consensus 102 ~~a~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 102 DKARQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp HHHHHTCSEEEEECSTTHHHH
T ss_pred HHHHhcCCeEEEEEChHHHhh
Confidence 666667899999999998764
No 137
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.98 E-value=7.2e-06 Score=95.78 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=65.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc-CCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCc--ccHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH-DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSS--TDIED 279 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~-~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~--~~~e~ 279 (583)
+.+|++++|.||||+|||||+++++....... +.--...-..+..- +++ +.+++... ++.. .+. ....+
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~---d~i---~~~ig~~d-~l~~~~stfs~em~~ 742 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV---DGI---FTRMGAAD-NIYKGRSTFMEELTD 742 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---SEE---EEEC-----------CCHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---HHH---HHhCChHH-HHHHhHHHhhHHHHH
Confidence 56799999999999999999999986543211 00000000111100 000 01111110 0000 000 11222
Q ss_pred HHHHhc-ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHH-HHHHHHcCCCcEEEecccCC
Q 007957 280 IVEKVQ-PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA-LLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 280 i~~~i~-~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~-L~~lAk~~g~tVIlisH~~k 341 (583)
+...+. ..+|++|++||++... +......++.. +..++++.|+++|+++|...
T Consensus 743 ~~~il~~a~~p~LlLLDEP~~Gl---------D~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 743 TAEIIRKATSQSLVILDELGRGT---------STHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp HHHHHHHCCTTCEEEEESTTTTS---------CHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHhccCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 222222 4579999999998754 44455566634 44456667999999999863
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.98 E-value=2e-05 Score=81.64 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=69.1
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHH-HHhccccccccccCCccc-HHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNR-ADRMMIATEELFLYSSTD-IEDI 280 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R-~~rl~i~~~~i~i~~~~~-~e~i 280 (583)
..+..++|.|++|+|||||+..++..+....+ .+..++|++... +...+... +..++...... -.+..+ ++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL--GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFT-GLSIAELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC--SSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSS-SCCHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc--CCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHH
Confidence 34678999999999999999999988765311 034688888532 22232222 22333221100 001111 3445
Q ss_pred HHHhcccC-CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH---HcCCCcEEEecccC
Q 007957 281 VEKVQPLS-PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA---KKTNIPVLLAGHVT 340 (583)
Q Consensus 281 ~~~i~~~~-p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA---k~~g~tVIlisH~~ 340 (583)
.+.+...+ +.+||||+++.+.... +. +.+..|.++. ...++.+|+++|..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~------~~----~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKY------ND----DILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSS------CS----THHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHhccCCeEEEEEcChhhhhccC------cC----HHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 55555444 8899999999875321 01 2333444444 34577888888754
No 139
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.6e-06 Score=94.15 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=28.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+.+|++++|.|++|+|||||++.+++.+...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence 4689999999999999999999999988765
No 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.96 E-value=2.6e-05 Score=82.38 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=65.9
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccc-ccccCCcccHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIVE 282 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~-~i~i~~~~~~e~i~~ 282 (583)
+.+|++++|.|++|+|||||+..++..+.... .+.++++.. +.+ +..+ ...++... .+- .....+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~----~g~I~~~e~--~~e-~~~~-~~~~~v~Q~~~g-~~~~~~~~~l~ 203 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTK----SYHIITIED--PIE-YVFK-HKKSIVNQREVG-EDTKSFADALR 203 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS----CCEEEEEES--SCC-SCCC-CSSSEEEEEEBT-TTBSCSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC----CcEEEEecc--cHh-hhhc-cCceEEEeeecC-CCHHHHHHHHH
Confidence 68899999999999999999999999887641 245655542 211 1000 01111111 000 01223344444
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
..-..+|+++++||+.. ...+. .+.+.+ ..|.+|+.+.|...
T Consensus 204 ~~L~~~pd~illdE~~d------------~e~~~----~~l~~~-~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRD------------LETVE----TALRAA-ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCS------------HHHHH----HHHHHH-TTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCC------------HHHHH----HHHHHH-hcCCEEEEEECcch
Confidence 44456899999999962 12222 222334 46889999999853
No 141
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.94 E-value=5.2e-05 Score=77.83 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
+|++++|.|++|+|||||+..+++.+... +++|++...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-----~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-----GKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-----TCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEeec
Confidence 68999999999999999999999998874 5677777654
No 142
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.94 E-value=5.1e-05 Score=77.61 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=67.6
Q ss_pred hhhhHHhcCCccC-------CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc
Q 007957 194 NEVARVLGGGLVP-------GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM 262 (583)
Q Consensus 194 ~eLD~vLgGGi~~-------GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl 262 (583)
.+|++.++++... |.++++.|++|+||||++..++..++.. +++|++++.+. ..+++.....+.
T Consensus 78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D~~r~~a~~ql~~~~~~~ 152 (297)
T 1j8m_F 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGADVYRPAALEQLQQLGQQI 152 (297)
T ss_dssp HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecCCCCHHHHHHHHHHhccC
Confidence 6788888765433 8899999999999999999999999874 67899999874 234555555555
Q ss_pred cccccccccCCcccH----HHHHHHhcccCCCEEEEccchh
Q 007957 263 MIATEELFLYSSTDI----EDIVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 263 ~i~~~~i~i~~~~~~----e~i~~~i~~~~p~lVVIDsi~~ 299 (583)
+++.-.. ....+. .+.++.+...++++||||.+..
T Consensus 153 ~v~v~~~--~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 153 GVPVYGE--PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp TCCEECC--TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred CeEEEec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 5432110 011122 2344445446789999998754
No 143
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.2e-05 Score=84.33 Aligned_cols=114 Identities=24% Similarity=0.396 Sum_probs=69.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDIV 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~i~ 281 (583)
|+.+..-++|+||||+|||+|+..+|..+. .+.+.+++.+-.. -++ -++..+.++.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~--------~~~~~v~~~~l~~---------------~~~Ge~e~~ir~lF 258 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK--------AAFIRVNGSEFVH---------------KYLGEGPRMVRDVF 258 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT--------CEEEEEEGGGTCC---------------SSCSHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCeEEEecchhhc---------------cccchhHHHHHHHH
Confidence 566666799999999999999999998764 3577777543110 000 0123456677
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHH----HHHHHHHHHHHHHcCCCcEEEeccc
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ----VKECTSALLRFAKKTNIPVLLAGHV 339 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q----vrei~~~L~~lAk~~g~tVIlisH~ 339 (583)
.......|.+++||++..+.........+.... +.+++..+..+....++.||.++..
T Consensus 259 ~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 777788899999999998865432222222222 2233333333333445555555543
No 144
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.89 E-value=1.5e-05 Score=75.26 Aligned_cols=24 Identities=38% Similarity=0.779 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la 232 (583)
.++|.|+||+|||||+..+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999874
No 145
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.9e-05 Score=85.02 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=56.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDIV 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~i~ 281 (583)
|+.+..-++|+||||+|||+|+..+|..+.. +.+++++.+-.. -++ -++..+..+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--------~~~~v~~s~l~s---------------k~~Gese~~ir~~F 267 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--------NFIFSPASGIVD---------------KYIGESARIIREMF 267 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGTCC---------------SSSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEehhhhcc---------------ccchHHHHHHHHHH
Confidence 6777777999999999999999999987643 577777532110 001 0123356677
Q ss_pred HHhcccCCCEEEEccchhhhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVYLR 303 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~ 303 (583)
.......|.+|+||++.++...
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~ 289 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGR 289 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCC
T ss_pred HHHHhcCCceeeeecccccccc
Confidence 7777889999999999987643
No 146
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.88 E-value=1.6e-05 Score=94.11 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=68.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH-HHhcccccccccc-CCc--ccHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR-ADRMMIATEELFL-YSS--TDIEDIVE 282 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R-~~rl~i~~~~i~i-~~~--~~~e~i~~ 282 (583)
|++++|.|+||+|||||++++ +.+..... -..|+..+...-.+..+ +.+++... .+.. .+. ..+.++..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aq-----iG~~Vpq~~~~l~v~d~I~~rig~~d-~~~~~~stf~~em~~~a~ 861 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQ-----MGCYVPAEVCRLTPIDRVFTRLGASD-RIMSGESTFFVELSETAS 861 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHT-----TTCCEESSEEEECCCSBEEEECC----------CHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhh-----eeEEeccCcCCCCHHHHHHHHcCCHH-HHhhchhhhHHHHHHHHH
Confidence 899999999999999999999 55432110 01133222100000000 01111110 0000 000 01122211
Q ss_pred H-hcccCCCEEEEccchhhhhhcccCCCCCHHH-HHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEE
Q 007957 283 K-VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ-VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLY 360 (583)
Q Consensus 283 ~-i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~q-vrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~ 360 (583)
. ....+|++|++||++... +... ...+...|..++++.++++|+++|.... ++.++|.+.+
T Consensus 862 al~la~~~sLlLLDEp~~Gt---------d~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el--------~~~~~d~~~v 924 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGT---------ATFDGTAIANAVVKELAETIKCRTLFSTHYHSL--------VEDYSQNVAV 924 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTS---------CHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH--------HHHTSSCSSE
T ss_pred HHHhCCCCcEEEEECCCCCC---------ChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH--------HHHhCCccee
Confidence 1 123479999999998654 3232 2334455556666669999999998743 5566776655
Q ss_pred E
Q 007957 361 M 361 (583)
Q Consensus 361 L 361 (583)
+
T Consensus 925 ~ 925 (1022)
T 2o8b_B 925 R 925 (1022)
T ss_dssp E
T ss_pred e
Confidence 4
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.88 E-value=4.3e-05 Score=78.89 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=56.3
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
.|+..+..-++|+|+||+|||+|+..++..+. +.++++++..+-.. ...-..+..+..+
T Consensus 39 ~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-------~~~~~~i~~~~l~~--------------~~~g~~~~~~~~l 97 (322)
T 1xwi_A 39 TGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------NSTFFSISSSDLVS--------------KWLGESEKLVKNL 97 (322)
T ss_dssp CTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-------SCEEEEEECCSSCC--------------SSCCSCHHHHHHH
T ss_pred hCCCCCCceEEEECCCCccHHHHHHHHHHHcC-------CCcEEEEEhHHHHh--------------hhhhHHHHHHHHH
Confidence 45667778899999999999999999998762 34577777643210 0000123335566
Q ss_pred HHHhcccCCCEEEEccchhhhh
Q 007957 281 VEKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~ 302 (583)
.......+|.+|+||++..+..
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGC
T ss_pred HHHHHhcCCcEEEeecHHHhcc
Confidence 6666677899999999998753
No 148
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.87 E-value=2.3e-06 Score=81.92 Aligned_cols=26 Identities=35% Similarity=0.707 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|++++|.|+||+|||||+..+++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999999987
No 149
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.86 E-value=2e-05 Score=85.82 Aligned_cols=136 Identities=25% Similarity=0.349 Sum_probs=73.4
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
+.-+++| ++|.|+||+|||+|+..++.... .+.++++..+-.+.+ .+ .....+..+
T Consensus 45 g~~~p~g--vLL~GppGtGKT~Laraia~~~~--------~~f~~is~~~~~~~~------~g--------~~~~~~r~l 100 (476)
T 2ce7_A 45 GARMPKG--ILLVGPPGTGKTLLARAVAGEAN--------VPFFHISGSDFVELF------VG--------VGAARVRDL 100 (476)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHHHHT--------CCEEEEEGGGTTTCC------TT--------HHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHHHcC--------CCeeeCCHHHHHHHH------hc--------ccHHHHHHH
Confidence 3445555 88999999999999999988653 457788754322100 00 012234455
Q ss_pred HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH----HcCCCcEEEecccCCccCcCCccchh-eec
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA----KKTNIPVLLAGHVTKSGDIAGPRVLE-HIV 355 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA----k~~g~tVIlisH~~k~g~~ag~~~Le-~~a 355 (583)
++......|.+|+||++..+......+..+......+.+..|.... ...++.||.++|....- .+..+. .-.
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L---d~allR~gRF 177 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL---DPALLRPGRF 177 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS---CGGGGSTTSS
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh---chhhcccCcc
Confidence 6666667899999999988743211111111222223333433332 33466777777665321 111121 135
Q ss_pred cEEEEEeC
Q 007957 356 DAVLYMEG 363 (583)
Q Consensus 356 D~Vl~Le~ 363 (583)
|..+.+..
T Consensus 178 d~~i~i~~ 185 (476)
T 2ce7_A 178 DKKIVVDP 185 (476)
T ss_dssp CEEEECCC
T ss_pred eeEeecCC
Confidence 66676653
No 150
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=3.5e-05 Score=82.40 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDI 280 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~i 280 (583)
.|+++..-++|+||||+|||+|+..+|..+.. +.+.+++.+-.. -++ -++..+..+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--------~fi~v~~s~l~s---------------k~vGesek~ir~l 267 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--------TFLRIVGSELIQ---------------KYLGDGPRLCRQI 267 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--------EEEEEESGGGCC---------------SSSSHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCC--------CEEEEEHHHhhh---------------ccCchHHHHHHHH
Confidence 36666677999999999999999999988653 577777542110 011 012335667
Q ss_pred HHHhcccCCCEEEEccchhhhhhc
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRG 304 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~ 304 (583)
.+......|.+|+||++.++....
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~~R 291 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGTKR 291 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSCCC
T ss_pred HHHHHhcCCcEEEEehhhhhcccC
Confidence 777778889999999999876543
No 151
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.9e-05 Score=83.50 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=69.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDIV 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~i~ 281 (583)
|+++..-++|+||||+|||+|+..+|..+. .+.+.+++.+-.. -++ -++..+..+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~--------~~f~~v~~s~l~~---------------~~vGese~~ir~lF 267 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN--------ATFLKLAAPQLVQ---------------MYIGEGAKLVRDAF 267 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CEEEEEEGGGGCS---------------SCSSHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC--------CCEEEEehhhhhh---------------cccchHHHHHHHHH
Confidence 666667799999999999999999998764 3577777532110 011 0123356667
Q ss_pred HHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHH----HcCCCcEEEecccC
Q 007957 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA----KKTNIPVLLAGHVT 340 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lA----k~~g~tVIlisH~~ 340 (583)
.......|.+|+||++.++......+..+....+...+..|.... ...++.||.++...
T Consensus 268 ~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 268 ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 777778899999999998864432222222223333333443333 23345555555443
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=4.1e-05 Score=79.18 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la 232 (583)
++|.|+||+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999654
No 153
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.81 E-value=0.00011 Score=72.63 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=50.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
..+.| ++|.|+||+|||||+..++..+. .++++++..+-... ..-.....+..+.+
T Consensus 43 ~~~~~--vll~G~~GtGKT~la~~la~~~~--------~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~~ 98 (257)
T 1lv7_A 43 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK--------VPFFTISGSDFVEM--------------FVGVGASRVRDMFE 98 (257)
T ss_dssp CCCCE--EEEECCTTSCHHHHHHHHHHHHT--------CCEEEECSCSSTTS--------------CCCCCHHHHHHHHH
T ss_pred CCCCe--EEEECcCCCCHHHHHHHHHHHcC--------CCEEEEeHHHHHHH--------------hhhhhHHHHHHHHH
Confidence 34444 89999999999999999987653 35777775432110 00011223455566
Q ss_pred HhcccCCCEEEEccchhhhh
Q 007957 283 KVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~ 302 (583)
......|.+++||++..+..
T Consensus 99 ~a~~~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 99 QAKKAAPCIIFIDEIDAVGR 118 (257)
T ss_dssp HHHTTCSEEEEETTHHHHTC
T ss_pred HHHHcCCeeehhhhhhhhcc
Confidence 56566788999999987653
No 154
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=5.7e-05 Score=78.35 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCcc--CHHHHHHH-HHhccccccccccCCccc-HHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEE--SVEQIGNR-ADRMMIATEELFLYSSTD-IEDI 280 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~Ee--s~~qi~~R-~~rl~i~~~~i~i~~~~~-~e~i 280 (583)
.+..++|.|+||+|||||+..++..+..... .+.+..++|++... +...+... +..++...... -.+..+ ++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l 121 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFT-GLSVGEVYERL 121 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSS-CCCHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHH
Confidence 4567999999999999999999988754210 00145688888654 33333222 23333321100 001111 3445
Q ss_pred HHHhccc-CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH----cCCCcEEEecccC
Q 007957 281 VEKVQPL-SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK----KTNIPVLLAGHVT 340 (583)
Q Consensus 281 ~~~i~~~-~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk----~~g~tVIlisH~~ 340 (583)
.+.+... ++.+||||+++.+.... ...+.+..|.+... ..++.+|++++..
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 5555444 37799999999874210 01244445554443 3466777777654
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.78 E-value=0.00013 Score=78.43 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=66.6
Q ss_pred hhhhHHhcCC---c---cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhcc
Q 007957 194 NEVARVLGGG---L---VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMM 263 (583)
Q Consensus 194 ~eLD~vLgGG---i---~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~ 263 (583)
++|.++|++. + .++.+++++|++|+||||++..+|..+... +.+|++++.+.- .+|+.....+.+
T Consensus 81 ~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~-----G~kVllv~~D~~R~aa~eqL~~~~~~~g 155 (443)
T 3dm5_A 81 EELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKR-----GYKVGVVCSDTWRPGAYHQLRQLLDRYH 155 (443)
T ss_dssp HHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEECCCSSTHHHHHHHHHHGGGT
T ss_pred HHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCcchhHHHHHHHHHHhcC
Confidence 4666666531 1 136899999999999999999999998874 789999997642 456666666666
Q ss_pred ccccccccCCccc----HHHHHHHhcccCCCEEEEccch
Q 007957 264 IATEELFLYSSTD----IEDIVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 264 i~~~~i~i~~~~~----~e~i~~~i~~~~p~lVVIDsi~ 298 (583)
++..... ...+ ..+.++.+...++++||||...
T Consensus 156 vpv~~~~--~~~dp~~i~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 156 IEVFGNP--QEKDAIKLAKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp CEEECCT--TCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CcEEecC--CCCCHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5432111 1122 2344455555679999999775
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.77 E-value=6.2e-05 Score=76.94 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC----HHHHHHHHHhccccccccccCCcccHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES----VEQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees----~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
+|.+++|.|++|+||||++..++..+... .|.+|++++.+.. .+++....+.++++... ..+..++...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~----~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~~~~l~~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE----KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYTKEEFQQAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCCHHHHHHHH
Confidence 68899999999999999999999999853 2568999997652 34555544555543211 11222333334
Q ss_pred HHhcccCCCEEEEccc
Q 007957 282 EKVQPLSPRALIIDSI 297 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi 297 (583)
..+ .++++||||..
T Consensus 178 ~~~--~~~dlvIiDT~ 191 (296)
T 2px0_A 178 ELF--SEYDHVFVDTA 191 (296)
T ss_dssp HHG--GGSSEEEEECC
T ss_pred HHh--cCCCEEEEeCC
Confidence 333 57899999943
No 157
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.76 E-value=1.6e-05 Score=73.48 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
+..++|.|+||+|||+|+..++..+...... ..+.++++++... +... .... . .....+.+++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~-~----~~~~~~~~~~~~~ 110 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS----LIAG---AKYR-G----DFEERLKSILKEV 110 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH----HHHH---CCSH-H----HHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH----hhcC---CCch-h----HHHHHHHHHHHHH
Confidence 4567999999999999999999887652100 0134677765321 1100 0000 0 0011233444444
Q ss_pred ccc-CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEeccc
Q 007957 285 QPL-SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339 (583)
Q Consensus 285 ~~~-~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~ 339 (583)
... ++.+||||+++.+...... ..+ ..++.+.|..+..+.++.+|+++..
T Consensus 111 ~~~~~~~vl~iDe~~~l~~~~~~-~~~----~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 111 QDAEGQVVMFIDEIHTVVGAGAV-AEG----ALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp HHTTTSEEEEETTGGGGSSSSSS-CTT----SCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred HhcCCceEEEEeCHHHhcccccc-ccc----chHHHHHHHHHHhcCCeeEEEecCH
Confidence 333 6789999999986421110 000 0123444555555667777777654
No 158
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.76 E-value=4.8e-05 Score=74.70 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCeE-EEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc--CHHHHHHHHHhccccccccc-----cCCcccH
Q 007957 206 PGSL-VLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE--SVEQIGNRADRMMIATEELF-----LYSSTDI 277 (583)
Q Consensus 206 ~Gsv-ilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee--s~~qi~~R~~rl~i~~~~i~-----i~~~~~~ 277 (583)
+|.+ +++.|++|+||||++..++..++.. |.+|++++.+. ..+.... ...+........ ...+.++
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-----G~~V~v~d~D~q~~~~~~al-~~gl~~~~~~~~~~~~~~~~e~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-----GVRVMAGVVETHGRAETEAL-LNGLPQQPLLRTEYRGMTLEEMDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCCTTCHHHHHH-HTTSCBCCCEEEEETTEEEEECCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-----CCCEEEEEeCCCCChhHHHH-hcCccccCcceeecCCcccccccH
Confidence 4555 8889999999999999999999874 67898888765 3332221 122211100011 1123456
Q ss_pred HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 278 e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
+.++. .+|+++|||++...-.+.. ........+. ...+.++.++.+.|+..
T Consensus 78 ~~~L~----~~pdlvIVDElG~~~~~~~----r~~~~~qDV~-----~~l~sgidVitT~Nlqh 128 (228)
T 2r8r_A 78 DALLK----AAPSLVLVDELAHTNAPGS----RHTKRWQDIQ-----ELLAAGIDVYTTVNVQH 128 (228)
T ss_dssp HHHHH----HCCSEEEESCTTCBCCTTC----SSSBHHHHHH-----HHHHTTCEEEEEEEGGG
T ss_pred HHHHh----cCCCEEEEeCCCCCCcccc----hhHHHHHHHH-----HHHcCCCCEEEEccccc
Confidence 66544 3699999999975311111 1111111221 13456889999988653
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.75 E-value=2.9e-05 Score=71.66 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
.+..++|.|++|+|||+|+..++..+...... ..+.++++++...... +.. ..-.....+.+++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~ 109 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA---------GAK---YRGEFEERLKGVLND 109 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT---------TTC---SHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc---------cCC---ccccHHHHHHHHHHH
Confidence 34568999999999999999999887542100 0134677776421100 000 000001123334443
Q ss_pred hc-ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 284 VQ-PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 284 i~-~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
+. ..++.+|+||+++.+....... ....+...|..+....++.+|+++...
T Consensus 110 ~~~~~~~~vl~iDe~~~l~~~~~~~------~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 110 LAKQEGNVILFIDELHTMVGAGKAD------GAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp HHHSTTTEEEEEETGGGGTT------------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred HhhcCCCeEEEEeCHHHHhccCccc------chHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 32 3457799999999874221000 001223344444456677777776543
No 160
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.74 E-value=1.4e-05 Score=82.25 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh-hhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA-DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la-~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~ 285 (583)
+.-++|.|+||+|||+|+..++..+. .. +.+|+|++..+-..++ .. .+.. ..+..++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-----g~~v~~~~~~~l~~~l----~~-~~~~--------~~~~~~~~~~- 212 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-----GVSTTLLHFPSFAIDV----KN-AISN--------GSVKEEIDAV- 212 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-----CCCEEEEEHHHHHHHH----HC-CCC------------CCTTHHH-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEHHHHHHHH----HH-Hhcc--------chHHHHHHHh-
Confidence 57899999999999999999999887 53 6789999864322222 11 0111 1111112222
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.++++||||++...... .....+++..+.+.....+.++|++++..
T Consensus 213 -~~~~lLiiDdig~~~~~--------~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 213 -KNVPVLILDDIGAEQAT--------SWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp -HTSSEEEEETCCC--------------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred -cCCCEEEEcCCCCCCCC--------HHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 24689999999653211 11111233333333223366788888765
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.74 E-value=0.00015 Score=75.53 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=70.5
Q ss_pred hHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc--CCCC-CccEEEEeCcc---CHHHHHHHH-Hhc-cccccc
Q 007957 197 ARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH--DLGE-PSPVVYVSGEE---SVEQIGNRA-DRM-MIATEE 268 (583)
Q Consensus 197 D~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~--~~~~-~~~VLyis~Ee---s~~qi~~R~-~rl-~i~~~~ 268 (583)
...+.|+ .+..++|.|+||+|||+|+..++..+.... .... +..++|++... +..++...+ ..+ +.....
T Consensus 37 ~~~~~~~--~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 114 (384)
T 2qby_B 37 RYFVKNE--VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK 114 (384)
T ss_dssp HHHHTTC--CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS
T ss_pred HHHHcCC--CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC
Confidence 3444443 345899999999999999999998875420 0001 35788888543 444443332 222 221110
Q ss_pred cccCCcccHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHH-HHHHHHHHHcCCCcEEEecccC
Q 007957 269 LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKEC-TSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 269 i~i~~~~~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei-~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.......-++.+.+.+...++ +||||+++.+.... . .+. +..|.+.. .++.+|++++..
T Consensus 115 ~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~------~----~~~~l~~l~~~~--~~~~iI~~t~~~ 174 (384)
T 2qby_B 115 HGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR------G----GDIVLYQLLRSD--ANISVIMISNDI 174 (384)
T ss_dssp SSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST------T----SHHHHHHHHTSS--SCEEEEEECSST
T ss_pred CCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC------C----CceeHHHHhcCC--cceEEEEEECCC
Confidence 000011124555555665555 99999999874211 0 122 33343332 577777776554
No 162
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.74 E-value=4.8e-05 Score=78.29 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=53.8
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
.++..+..-++|.|+||+|||+|+..++..+. .++++++..+ +... ..+ ..+..+..+
T Consensus 45 ~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--------~~~~~v~~~~----l~~~--~~g--------~~~~~~~~~ 102 (322)
T 3eie_A 45 KGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSD----LVSK--WMG--------ESEKLVKQL 102 (322)
T ss_dssp CTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--------CEEEEEEHHH----HHTT--TGG--------GHHHHHHHH
T ss_pred hcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--------CCEEEEchHH----Hhhc--ccc--------hHHHHHHHH
Confidence 34556667899999999999999999987743 3577776532 1110 000 012234556
Q ss_pred HHHhcccCCCEEEEccchhhhh
Q 007957 281 VEKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~ 302 (583)
.......+|.+|+||++..+..
T Consensus 103 f~~a~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 103 FAMARENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHHHHHTSSEEEEEECGGGGSC
T ss_pred HHHHHhcCCeEEEechhhhhhc
Confidence 6666677899999999998753
No 163
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=4.3e-05 Score=82.45 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=56.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDIV 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~i~ 281 (583)
|+.+..-+||+||||+|||+|+..+|..+.. +.+.+++.+-.. -++ -++..+..+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--------~fi~vs~s~L~s---------------k~vGesek~ir~lF 295 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDA--------TFIRVIGSELVQ---------------KYVGEGARMVRELF 295 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--------EEEEEEGGGGCC---------------CSSSHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCC--------CeEEEEhHHhhc---------------ccCCHHHHHHHHHH
Confidence 6777777999999999999999999987643 577776542110 011 1123456677
Q ss_pred HHhcccCCCEEEEccchhhhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVYLR 303 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~~ 303 (583)
.......|.+|+||++..+...
T Consensus 296 ~~Ar~~aP~IIfiDEiDai~~~ 317 (467)
T 4b4t_H 296 EMARTKKACIIFFDEIDAVGGA 317 (467)
T ss_dssp HHHHHTCSEEEEEECCTTTSBC
T ss_pred HHHHhcCCceEeeccccccccc
Confidence 7777889999999999987644
No 164
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.73 E-value=4.7e-05 Score=75.07 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=47.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
|+....-++|.|+||+|||+|+..++..+. .++++++..+-... +.-.....+..+.+
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~--------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 92 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ--------VPFLAMAGAEFVEV--------------IGGLGAARVRSLFK 92 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHT--------CCEEEEETTTTSSS--------------STTHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEechHHHHhh--------------ccChhHHHHHHHHH
Confidence 445556689999999999999999988653 35778776542110 00001123444555
Q ss_pred HhcccCCCEEEEccchhhh
Q 007957 283 KVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~ 301 (583)
......|.+|+||++..+.
T Consensus 93 ~a~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 93 EARARAPCIVYIDEIDAVG 111 (262)
T ss_dssp HHHHTCSEEEEEECC----
T ss_pred HHHhcCCeEEEEeCcchhh
Confidence 5555678999999999874
No 165
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.70 E-value=7.2e-05 Score=76.11 Aligned_cols=78 Identities=15% Similarity=0.018 Sum_probs=46.8
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHH-
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV- 281 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~- 281 (583)
|......++|.|+||+|||+|+..+|..+. .++++++..+-.... .|- .+..+.++.
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~--------~~~i~v~~~~l~~~~------~g~--------~~~~i~~~f~ 89 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG--------INPIMMSAGELESGN------AGE--------PAKLIRQRYR 89 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHT--------CCCEEEEHHHHHCC---------H--------HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeHHHhhhcc------Cch--------hHHHHHHHHH
Confidence 445556789999999999999999998773 357888743211000 000 011122222
Q ss_pred ---HHhcccCCCEEEEccchhhhh
Q 007957 282 ---EKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 282 ---~~i~~~~p~lVVIDsi~~l~~ 302 (583)
+.++...|.+|+||++..+..
T Consensus 90 ~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 90 EAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp HHHHHHTTSSCCCEEEECCC----
T ss_pred HHHHHHhcCCCeEEEEechhhhcC
Confidence 233567899999999987653
No 166
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.67 E-value=3.7e-05 Score=88.80 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=26.1
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
.+|++++|.|+||+|||||++++++....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~ 633 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALM 633 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHH
Confidence 57999999999999999999999987543
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.65 E-value=0.00013 Score=72.01 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=48.1
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
-+++| ++|.|+||+|||||+..++..+. .+.+++++.+ +.. .... .....+..+.+
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--------~~~i~~~~~~----~~~----~~~~------~~~~~i~~~~~ 102 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSD----FVE----MFVG------VGAARVRDLFE 102 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHH----HHH----SCTT------HHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhC--------CCEEEeeHHH----HHH----HHhh------HHHHHHHHHHH
Confidence 44566 89999999999999999987753 2467776532 111 0000 00122344555
Q ss_pred HhcccCCCEEEEccchhhh
Q 007957 283 KVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~ 301 (583)
......|.++++|++..+.
T Consensus 103 ~~~~~~~~i~~~Deid~l~ 121 (254)
T 1ixz_A 103 TAKRHAPCIVFIDEIDAVG 121 (254)
T ss_dssp HHTTSSSEEEEEETHHHHH
T ss_pred HHHhcCCeEEEehhhhhhh
Confidence 5555678999999997764
No 168
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.63 E-value=0.00037 Score=66.87 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=82.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC-----HHHHHHHHHhcccccc---ccccCCcc-----
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES-----VEQIGNRADRMMIATE---ELFLYSST----- 275 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees-----~~qi~~R~~rl~i~~~---~i~i~~~~----- 275 (583)
.++|.+.+|.||||.+.-++..++.. |.+|+++.+--. ...+..+ +++... .-+.....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~-----G~rV~~vQF~Kg~~~~gE~~~l~~---L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGH-----GKNVGVVQFIKGTWPNGERNLLEP---HGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHT-----TCCEEEEESSCCSSCCHHHHHHGG---GTCEEEECCTTCCCCGGGHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEeeCCCCCccHHHHHHh---CCcEEEEcccccccCCCCcHHH
Confidence 56777778999999999999998864 789999965432 2223332 321110 01112221
Q ss_pred ------cHHHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCcc
Q 007957 276 ------DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349 (583)
Q Consensus 276 ------~~e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~ 349 (583)
.++.+.+.+..-++|+||+|++.....-+.- + ..+++..|.+ +-.+..||+++... |.
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l----~---~~ev~~~l~~--Rp~~~~vIlTGr~a-------p~ 165 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL----P---LEEVISALNA--RPGHQTVIITGRGC-------HR 165 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS----C---HHHHHHHHHT--SCTTCEEEEECSSC-------CH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC----C---HHHHHHHHHh--CcCCCEEEEECCCC-------cH
Confidence 1344555566667999999999875422211 1 2344444432 33467888887665 34
Q ss_pred chheeccEEEEEeCce
Q 007957 350 VLEHIVDAVLYMEGEK 365 (583)
Q Consensus 350 ~Le~~aD~Vl~Le~~~ 365 (583)
.|-.+||.|-.|...+
T Consensus 166 ~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 166 DILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHCSEEEECCCSC
T ss_pred HHHHhCcceeeeccee
Confidence 5888899999887655
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.61 E-value=6.7e-05 Score=78.50 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=51.7
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
++..+..-++|+|+||+|||+|+..++..+. .++++++..+ +.. .+.-..+..+..+.
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~v~~~~----l~~----------~~~g~~~~~~~~~f 136 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSSD----LVS----------KWMGESEKLVKQLF 136 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--------CEEEEEEHHH----HHS----------CC---CHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhC--------CCEEEeeHHH----Hhh----------hhcchHHHHHHHHH
Confidence 4455666689999999999999999988763 3577775431 110 00001122345566
Q ss_pred HHhcccCCCEEEEccchhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~ 301 (583)
......+|.+|+||++..+.
T Consensus 137 ~~a~~~~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 137 AMARENKPSIIFIDQVDALT 156 (355)
T ss_dssp HHHHHTSSEEEEEECGGGGT
T ss_pred HHHHHcCCeEEEEechHhhc
Confidence 66666789999999999875
No 170
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.59 E-value=0.00026 Score=74.78 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=51.2
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
.++.-++|.|+||+|||+|+..++... +.++++++..+-...... .....+..+...+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~--------~~~~~~v~~~~l~~~~~g--------------~~~~~~~~~~~~a 203 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES--------NATFFNISAASLTSKYVG--------------EGEKLVRALFAVA 203 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT--------TCEEEEECSCCC---------------------CHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh--------cCcEEEeeHHHhhccccc--------------hHHHHHHHHHHHH
Confidence 345679999999999999999997653 346888887553322110 0122345566666
Q ss_pred cccCCCEEEEccchhhhh
Q 007957 285 QPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~ 302 (583)
...++.+|+||++..+..
T Consensus 204 ~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp HHSSSEEEEEETGGGGC-
T ss_pred HhcCCeEEEEECchhhcc
Confidence 677889999999988753
No 171
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.57 E-value=0.0001 Score=75.96 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=35.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.+|.+++|.|+||+|||||+..+++.+....+ ...+.|++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G---~~~v~~v~qd~ 130 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH---HPRVDLVTTDG 130 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT---CCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC---CCeEEEEecCc
Confidence 689999999999999999999999998876311 14578887653
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.57 E-value=0.00051 Score=70.93 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=36.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.+|.+++|.|++|+||||++..+|..++.. +++|++++.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-----g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL-----GYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCC
Confidence 578999999999999999999999999874 67899998775
No 173
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.57 E-value=9.5e-05 Score=79.76 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
|+..+..-++|.|+||+|||+|+..++..+. +.++++++..+-.... .+ ..+..+..+.
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-------~~~~~~v~~~~l~~~~------~g--------~~~~~~~~~f 220 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------NSTFFSISSSDLVSKW------LG--------ESEKLVKNLF 220 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-------SSEEEEECCC-----------------------CCCTHHHHH
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC-------CCCEEEEeHHHHHhhh------cc--------hHHHHHHHHH
Confidence 4556667899999999999999999988752 3467777765322110 01 1233466677
Q ss_pred HHhcccCCCEEEEccchhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~ 301 (583)
.......|.+|+||++..+.
T Consensus 221 ~~a~~~~~~vl~iDEid~l~ 240 (444)
T 2zan_A 221 QLARENKPSIIFIDEIDSLC 240 (444)
T ss_dssp HHHHHSCSEEEEESCTTTTC
T ss_pred HHHHHcCCeEEEEechHhhc
Confidence 77777789999999999875
No 174
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=0.00018 Score=72.61 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=49.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC-CcccHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY-SSTDIEDIVEK 283 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~-~~~~~e~i~~~ 283 (583)
.++..++|.|+||+|||||+..++..+. .+.++++..+-.. . +.. .......+...
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~--------~~~~~i~~~~l~~--------------~-~~~~~~~~~~~~~~~ 108 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS--------ATFLNISAASLTS--------------K-YVGDGEKLVRALFAV 108 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--------CEEEEEESTTTSS--------------S-SCSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEeeHHHHhh--------------c-ccchHHHHHHHHHHH
Confidence 3467899999999999999999987653 3566776532110 0 000 11223445555
Q ss_pred hcccCCCEEEEccchhhhh
Q 007957 284 VQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~ 302 (583)
....+|.+|+||++..+..
T Consensus 109 ~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 109 ARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp HHHTCSEEEEEETGGGTSB
T ss_pred HHHcCCcEEEeccHHHhcc
Confidence 5667899999999998753
No 175
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.56 E-value=0.00053 Score=69.93 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH----HHHHHHHHhcccccccccc-CCcccH-HH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV----EQIGNRADRMMIATEELFL-YSSTDI-ED 279 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~----~qi~~R~~rl~i~~~~i~i-~~~~~~-e~ 279 (583)
+|.+++|.|++|+||||++..++..++.. +++|++++.+... .|+.......+++.-.... ..+.++ ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-----~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~ 171 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRR 171 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHH
Confidence 68999999999999999999999999874 6789999876532 2233223333332100000 011122 23
Q ss_pred HHHHhcccCCCEEEEccchh
Q 007957 280 IVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 280 i~~~i~~~~p~lVVIDsi~~ 299 (583)
.++.+...++++||||++..
T Consensus 172 ~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 172 VEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp HHHHHHHHTCCEEEEECCCC
T ss_pred HHHHHHhCCCCEEEEeCCCC
Confidence 44444445799999999854
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.52 E-value=0.00033 Score=70.80 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=48.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
.++.-++|.|+||+|||+++..++..+..... ....++++++..+-.. . ++. .....+...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~l~~--------------~--~~g-~~~~~~~~~~ 126 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY-VRKGHLVSVTRDDLVG--------------Q--YIG-HTAPKTKEVL 126 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS-SSSCCEEEECGGGTCC--------------S--STT-CHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-cCCCcEEEEcHHHhhh--------------h--ccc-ccHHHHHHHH
Confidence 34556999999999999999999988765311 1123678887432100 0 011 1112223333
Q ss_pred cccCCCEEEEccchhhh
Q 007957 285 QPLSPRALIIDSIQTVY 301 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~ 301 (583)
....+.+|+||++..+.
T Consensus 127 ~~~~~~vl~iDEid~l~ 143 (309)
T 3syl_A 127 KRAMGGVLFIDEAYYLY 143 (309)
T ss_dssp HHHTTSEEEEETGGGSC
T ss_pred HhcCCCEEEEEChhhhc
Confidence 33467899999999765
No 177
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.49 E-value=0.00052 Score=70.12 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=34.2
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.+++.+.. +.. .+++|.|++|+|||+|+.+++..+.. .++|++...
T Consensus 20 ~el~~L~~--l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~--------~~~~~~~~~ 65 (357)
T 2fna_A 20 KEIEKLKG--LRA-PITLVLGLRRTGKSSIIKIGINELNL--------PYIYLDLRK 65 (357)
T ss_dssp HHHHHHHH--TCS-SEEEEEESTTSSHHHHHHHHHHHHTC--------CEEEEEGGG
T ss_pred HHHHHHHH--hcC-CcEEEECCCCCCHHHHHHHHHHhcCC--------CEEEEEchh
Confidence 45555443 444 59999999999999999999877532 478998653
No 178
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.48 E-value=0.00033 Score=68.31 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=25.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
+++|++++|.|+||+|||||+..+++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 58899999999999999999999998875
No 179
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.46 E-value=0.0003 Score=80.82 Aligned_cols=26 Identities=50% Similarity=0.492 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|++++|.|+||+|||||++++++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 89999999999999999999998764
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.44 E-value=8.4e-05 Score=85.60 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=55.6
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~ 281 (583)
-|+.+..-++|+|+||+|||+|++.+|..+ +.+.+++++.+ +.. ...--.+..+.++.
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el--------g~~~~~v~~~~----l~s----------k~~gese~~lr~lF 290 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPE----IMS----------KLAGESESNLRKAF 290 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT--------TCEEEEEEHHH----HHS----------SCTTHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh--------CCeEEEEEhHH----hhc----------ccchHHHHHHHHHH
Confidence 366666779999999999999999988654 34577776532 110 00001133466777
Q ss_pred HHhcccCCCEEEEccchhhhh
Q 007957 282 EKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 282 ~~i~~~~p~lVVIDsi~~l~~ 302 (583)
+......|.+|+||++..+..
T Consensus 291 ~~A~~~~PsIIfIDEiDal~~ 311 (806)
T 3cf2_A 291 EEAEKNAPAIIFIDELDAIAP 311 (806)
T ss_dssp HHHTTSCSEEEEEESGGGTCC
T ss_pred HHHHHcCCeEEEEehhccccc
Confidence 778888999999999998764
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=0.0003 Score=76.99 Aligned_cols=75 Identities=32% Similarity=0.508 Sum_probs=47.5
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC-CcccHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY-SSTDIEDI 280 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~-~~~~~e~i 280 (583)
.-+++| ++|.|+||+|||||+..++..+. .+.+++++.+-.+. ++- ....+..+
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~--------~~~i~i~g~~~~~~---------------~~g~~~~~v~~l 115 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSDFVEM---------------FVGVGAARVRDL 115 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHTT--------CCEEEEEGGGGTSS---------------CTTHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHhC--------CCEEEEehhHHHHh---------------hhhhHHHHHHHH
Confidence 345666 89999999999999999987753 35888886531110 000 01112223
Q ss_pred HHHhcccCCCEEEEccchhhh
Q 007957 281 VEKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~ 301 (583)
.+......|.+++||++..+.
T Consensus 116 fq~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTC
T ss_pred HHHHHhcCCCEEEEehHHHHH
Confidence 333333468999999998764
No 182
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.39 E-value=6.4e-05 Score=78.86 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=74.6
Q ss_pred CccC--CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe----Ccc---CH---HHHHHHHHhc---cc-cc
Q 007957 203 GLVP--GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS----GEE---SV---EQIGNRADRM---MI-AT 266 (583)
Q Consensus 203 Gi~~--GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis----~Ee---s~---~qi~~R~~rl---~i-~~ 266 (583)
-+.+ |+.++|.|++|+|||||+..+++.+....+. +.+.+ |+. +.+ .. ..+..-.+.. .. ..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~-e~G~i-~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~ 241 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAW-EYGRE-FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHS 241 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEEC-CTTHH-HHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcch-hhHHH-HHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhcc
Confidence 4566 8999999999999999999999987654200 00122 221 111 11 1111111100 00 01
Q ss_pred cccccCCcccH--------------HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCc
Q 007957 267 EELFLYSSTDI--------------EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP 332 (583)
Q Consensus 267 ~~i~i~~~~~~--------------e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~t 332 (583)
+++.+...... ..+...+...+|+++++|+...-+..+.....++..+...+.+.|.++.++.+.+
T Consensus 242 ~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ 321 (365)
T 1lw7_A 242 HKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP 321 (365)
T ss_dssp SSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC
T ss_pred CCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 23322221110 1122223345799999997221110000001123344567778888888888999
Q ss_pred EEEecccCCccCcCCccchheeccEEEEE
Q 007957 333 VLLAGHVTKSGDIAGPRVLEHIVDAVLYM 361 (583)
Q Consensus 333 VIlisH~~k~g~~ag~~~Le~~aD~Vl~L 361 (583)
|++++|.+. .+.++|.+..+
T Consensus 322 ililde~~~---------~~r~~~~i~~i 341 (365)
T 1lw7_A 322 YIEIESPSY---------LDRYNQVKAVI 341 (365)
T ss_dssp CEEEECSSH---------HHHHHHHHHHH
T ss_pred EEEeCCCCH---------HHHHHHHHHHH
Confidence 999987752 45555555444
No 183
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.38 E-value=0.00026 Score=71.01 Aligned_cols=75 Identities=28% Similarity=0.475 Sum_probs=47.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
-+++| ++|.|+||+|||||+..++..+. .+.+++++.+ +... ... .....+..+.+
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--------~~~i~~~~~~----~~~~----~~~------~~~~~i~~~~~ 126 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR--------VPFITASGSD----FVEM----FVG------VGAARVRDLFE 126 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEHHH----HHHS----TTT------HHHHHHHHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC--------CCEEEecHHH----HHHH----Hhh------HHHHHHHHHHH
Confidence 34566 89999999999999999988754 2467776532 1110 000 00112334555
Q ss_pred HhcccCCCEEEEccchhhh
Q 007957 283 KVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~ 301 (583)
......|.++++|++..+.
T Consensus 127 ~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp HHHTSCSEEEEEETHHHHH
T ss_pred HHHhcCCcEEehhhhHhhh
Confidence 5555678999999997654
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.38 E-value=0.00017 Score=65.26 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+.-++|.|+||+|||+++..++.....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 445899999999999999998776544
No 185
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.36 E-value=0.0015 Score=61.45 Aligned_cols=38 Identities=21% Similarity=0.403 Sum_probs=27.6
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
..|.+.+..+-.+ .++|.|++|+|||+|+..++..+..
T Consensus 27 ~~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 27 QRLKGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455555443222 3899999999999999999988754
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.34 E-value=0.00075 Score=69.94 Aligned_cols=38 Identities=34% Similarity=0.663 Sum_probs=31.9
Q ss_pred hhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 196 LD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+-+.+..|..+|..++|+|+||+|||+|+..++..+..
T Consensus 59 l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 59 VLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44555667777889999999999999999999988764
No 187
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.33 E-value=0.00061 Score=68.80 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
...++|.|+||+|||+++..++..+... +.++++++......... ....++........ .. ...+...+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~-----~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~-~~--~~~~~~~~~~ 117 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT-----EEAMIRIDMTEYMEKHA-VSRLIGAPPGYVGY-EE--GGQLTEAVRR 117 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC-----GGGEEEEEGGGCCSTTH-HHHHHCCCTTSTTT-TT--CCHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC-----CcceEEeeccccccccc-HHHhcCCCCccccc-cc--cchHHHHHHh
Confidence 4589999999999999999999988653 45788887654222111 01112222211111 11 1223344444
Q ss_pred cCCCEEEEccchhh
Q 007957 287 LSPRALIIDSIQTV 300 (583)
Q Consensus 287 ~~p~lVVIDsi~~l 300 (583)
....+++||++..+
T Consensus 118 ~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 118 RPYSVILFDAIEKA 131 (311)
T ss_dssp CSSEEEEEETGGGS
T ss_pred CCCeEEEEeChhhc
Confidence 45689999999764
No 188
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.32 E-value=0.00028 Score=71.13 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=47.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
-+++| ++|.|+||+|||||+..+++.+.. ..+++++.+-...... .....+..+.+
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~--------~~i~i~g~~l~~~~~~--------------~~~~~i~~vf~ 97 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGL--------NFISVKGPELLNMYVG--------------ESERAVRQVFQ 97 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTC--------EEEEEETTTTCSSTTH--------------HHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCC--------CEEEEEcHHHHhhhhh--------------HHHHHHHHHHH
Confidence 44556 999999999999999999887532 4677776432110000 00112333444
Q ss_pred HhcccCCCEEEEccchhhh
Q 007957 283 KVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~ 301 (583)
......|.++++|++..+.
T Consensus 98 ~a~~~~p~i~~~Deid~~~ 116 (274)
T 2x8a_A 98 RAKNSAPCVIFFDEVDALC 116 (274)
T ss_dssp HHHHTCSEEEEEETCTTTC
T ss_pred HHHhcCCCeEeeehhhhhh
Confidence 4445568899999998654
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.31 E-value=0.0003 Score=73.45 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=49.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
.+..-++|.|+||+|||+|+..++..+ +.++++++..+-... +.-.....+..+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~--------~~~~~~i~~~~l~~~--------------~~g~~~~~~~~~~~~a 172 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS--------GATFFSISASSLTSK--------------WVGEGEKMVRALFAVA 172 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT--------TCEEEEEEGGGGCCS--------------STTHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc--------CCeEEEEehHHhhcc--------------ccchHHHHHHHHHHHH
Confidence 345579999999999999999998764 246777776421100 0000011234455555
Q ss_pred cccCCCEEEEccchhhhh
Q 007957 285 QPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 285 ~~~~p~lVVIDsi~~l~~ 302 (583)
...++.+|+||++..+..
T Consensus 173 ~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 173 RCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp HHTCSEEEEEETHHHHTB
T ss_pred HhcCCeEEEEeCchhhhc
Confidence 566789999999998753
No 190
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.29 E-value=0.00035 Score=75.11 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=63.3
Q ss_pred hhhhHHhcCC---c--cCC--eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc
Q 007957 194 NEVARVLGGG---L--VPG--SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM 262 (583)
Q Consensus 194 ~eLD~vLgGG---i--~~G--svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl 262 (583)
.+|.+++++. + ..+ .+++|+|++|+||||++..++..++.. +.+|++++.+. ..+++.......
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~-----G~kVllv~~D~~r~~a~~qL~~~~~~~ 153 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR-----GLKPALIAADTYRPAAYEQLKQLAEKI 153 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH-----HCCEEEECCSCCCTTGGGSSHHHHHHS
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeccccCchHHHHHHHhhhcc
Confidence 5677888776 4 223 589999999999999999999999875 67899999763 233444333444
Q ss_pred cccccccc-c-CCccc-HHHHHHHhcccCCCEEEEccchh
Q 007957 263 MIATEELF-L-YSSTD-IEDIVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 263 ~i~~~~i~-i-~~~~~-~e~i~~~i~~~~p~lVVIDsi~~ 299 (583)
+++..... . -+... +.+.+..+ .+++++|||.+..
T Consensus 154 gv~v~~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~ 191 (432)
T 2v3c_C 154 HVPIYGDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGR 191 (432)
T ss_dssp SCCEECCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCS
T ss_pred CcceEecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCC
Confidence 44321111 0 01111 23333333 5689999998864
No 191
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.26 E-value=0.001 Score=63.37 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~ 233 (583)
..++|.|++|+|||||+..++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 38999999999999999999987764
No 192
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.25 E-value=5.2e-05 Score=81.08 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~ 234 (583)
.+++|.|+||+|||||+..+++.....
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~ 96 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEE 96 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 399999999999999999999866544
No 193
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.24 E-value=0.00079 Score=67.09 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=47.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
..+..-++|.|+||+|||+|+..++... +.+.++++.-+. .++.... .....+..+.+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~--------~~~~~~i~~~~~---------~~g~~~~----~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES--------NFPFIKICSPDK---------MIGFSET----AKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH--------TCSEEEEECGGG---------CTTCCHH----HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh--------CCCEEEEeCHHH---------hcCCchH----HHHHHHHHHHHH
Confidence 3556679999999999999999998873 235666654220 0010000 000123344444
Q ss_pred hcccCCCEEEEccchhhh
Q 007957 284 VQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~ 301 (583)
....++.+|+||++..+.
T Consensus 120 ~~~~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLL 137 (272)
T ss_dssp HHTSSEEEEEECCHHHHT
T ss_pred HHhcCCcEEEEEChhhhh
Confidence 445668999999999874
No 194
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00095 Score=73.25 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH--HHHHHHHHhccccccccc-cCCcccHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV--EQIGNRADRMMIATEELF-LYSSTDIEDIVE 282 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~--~qi~~R~~rl~i~~~~i~-i~~~~~~e~i~~ 282 (583)
....++|.|+||+||||++..++..+ +..+++++..+.. ..+........ ....+. ++.. ..+ .
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l--------~~~~i~in~s~~~~~~~~~~~i~~~~-~~~~~~~~~~~--~~~--~ 142 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL--------GYDILEQNASDVRSKTLLNAGVKNAL-DNMSVVGYFKH--NEE--A 142 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT--------TCEEEEECTTSCCCHHHHHHTGGGGT-TBCCSTTTTTC--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeCCCcchHHHHHHHHHHHh-ccccHHHHHhh--hhh--h
Confidence 45689999999999999999998775 2468888765432 22221111100 000000 0100 000 0
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
.....++.+||||++..+... + ...+..|.++.++.+.++|+++....
T Consensus 143 ~~~~~~~~vliIDEid~l~~~-------~----~~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 143 QNLNGKHFVIIMDEVDGMSGG-------D----RGGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp CCSSTTSEEEEECSGGGCCTT-------S----TTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred hhccCCCeEEEEECCCccchh-------h----HHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 112346789999999876421 1 12345566666777888999886543
No 195
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.21 E-value=0.0012 Score=69.20 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=54.4
Q ss_pred CCeEEEE--EcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCc--cCHHHHHHH-HHhccccccccccCCccc-HH
Q 007957 206 PGSLVLI--GGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGE--ESVEQIGNR-ADRMMIATEELFLYSSTD-IE 278 (583)
Q Consensus 206 ~GsvilI--~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~E--es~~qi~~R-~~rl~i~~~~i~i~~~~~-~e 278 (583)
.+..++| .|++|+|||||+..++..+..... .+.+..++|++.. .+..++... +..++...... -.+..+ ++
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~ 127 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR-GAPALDILK 127 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCT-TCCHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCHHHHHH
Confidence 4568888 999999999999999987754200 0013468899853 344444333 23344321100 001111 23
Q ss_pred HHHHHhcc-cCCCEEEEccchhhh
Q 007957 279 DIVEKVQP-LSPRALIIDSIQTVY 301 (583)
Q Consensus 279 ~i~~~i~~-~~p~lVVIDsi~~l~ 301 (583)
.+.+.+.. .++-+||||+++.+.
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHh
Confidence 33333432 347799999999864
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0019 Score=66.65 Aligned_cols=129 Identities=9% Similarity=0.079 Sum_probs=70.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCcc--CHHHHHHH-HHhcccccccc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEE--SVEQIGNR-ADRMMIATEEL 269 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ee--s~~qi~~R-~~rl~i~~~~i 269 (583)
.|...+.+| .+..++|+|+||+|||+++..++..+...... ...-.++|+++.. +..++... ++.+. ....
T Consensus 35 ~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~--g~~~ 110 (318)
T 3te6_A 35 PIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS--KENL 110 (318)
T ss_dssp HHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS--CCC-
T ss_pred HHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc--CCCC
Confidence 455556554 55678999999999999999999988643210 0123578888654 33333222 22221 1111
Q ss_pred cc-CCcccHHHHHHHh--cccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEecccC
Q 007957 270 FL-YSSTDIEDIVEKV--QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT--NIPVLLAGHVT 340 (583)
Q Consensus 270 ~i-~~~~~~e~i~~~i--~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~--g~tVIlisH~~ 340 (583)
.. .....+++++..+ ....+-+|+||++..+. . .+++..|.++.... .+.+|+++...
T Consensus 111 ~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------~----q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 111 CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------S----EKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp -CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------C----THHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------c----chHHHHHHhcccccCCcEEEEEEecCc
Confidence 00 0112234444443 23356799999998763 1 14555666655333 34566666544
No 197
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.19 E-value=0.0022 Score=70.12 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=62.4
Q ss_pred hhhhHHhcC---Cc----cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc
Q 007957 194 NEVARVLGG---GL----VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM 262 (583)
Q Consensus 194 ~eLD~vLgG---Gi----~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl 262 (583)
++|.+++++ .+ .+..+++|+|.+|+||||++..++..++.. +.+|+.++.+. ..+++.....+.
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-----G~kVllVd~D~~r~aa~~qL~~~~~~~ 155 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-----GWKTCLICADTFRAGAFDQLKQNATKA 155 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEeccccchhHHHHHHHHhhcc
Confidence 577888876 34 235689999999999999999999998864 67899998754 123444444444
Q ss_pred cccccccccCCcccHH----HHHHHhcccCCCEEEEccchh
Q 007957 263 MIATEELFLYSSTDIE----DIVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 263 ~i~~~~i~i~~~~~~e----~i~~~i~~~~p~lVVIDsi~~ 299 (583)
+++.... ....+.. +.++.+...+.+++|||.+..
T Consensus 156 ~i~v~~~--~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~ 194 (504)
T 2j37_W 156 RIPFYGS--YTEMDPVIIASEGVEKFKNENFEIIIVDTSGR 194 (504)
T ss_dssp TCCEEEC--CCCSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CceEEcc--CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4431110 1112222 223333335789999998764
No 198
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.15 E-value=0.0021 Score=65.46 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
|.+++|.|++|+|||||+.+++... +++|++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----------~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----------PGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----------SEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----------CcEEEEeec
Confidence 4799999999999999999987542 288988653
No 199
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.13 E-value=0.00028 Score=81.24 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=55.4
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
..|+.+..-++|+|+||+|||.|+..+|.... .+.+.+++ .++... ..--++..+.++
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--------~~f~~v~~----~~l~s~----------~vGese~~vr~l 562 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKG----PELLTM----------WFGESEANVREI 562 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--------CEEEECCH----HHHHTT----------TCSSCHHHHHHH
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhC--------CceEEecc----chhhcc----------ccchHHHHHHHH
Confidence 35677777799999999999999999987643 23444432 222110 001234557788
Q ss_pred HHHhcccCCCEEEEccchhhhh
Q 007957 281 VEKVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~ 302 (583)
.+..++..|.+|+||++.++..
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC-
T ss_pred HHHHHHcCCceeechhhhHHhh
Confidence 8888889999999999998764
No 200
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.12 E-value=0.0019 Score=69.14 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH----HHHHHHHHhcccccccccc-CCcccH-HH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV----EQIGNRADRMMIATEELFL-YSSTDI-ED 279 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~----~qi~~R~~rl~i~~~~i~i-~~~~~~-e~ 279 (583)
++.+++|.|++|+||||++..++..+... +++|++++.+... +++.......+++.-.... .++.++ .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-----g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~ 171 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRR 171 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHH
Confidence 68899999999999999999999999874 6789999876422 2343333444433100000 011122 33
Q ss_pred HHHHhcccCCCEEEEccchh
Q 007957 280 IVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 280 i~~~i~~~~p~lVVIDsi~~ 299 (583)
.++.+...+++++|||....
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGR 191 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCC
T ss_pred HHHHHHHCCCCEEEEcCCCc
Confidence 44444345789999997753
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.12 E-value=0.0019 Score=69.46 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=62.3
Q ss_pred hhhhHHhcCCc-------cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc----CHHHHHHHHHhc
Q 007957 194 NEVARVLGGGL-------VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE----SVEQIGNRADRM 262 (583)
Q Consensus 194 ~eLD~vLgGGi-------~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee----s~~qi~~R~~rl 262 (583)
++|-++|++.. .+..+++++|.+|+||||++..+|..++.. .+.+|+.++.+. ..+++.......
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~ 155 (433)
T 2xxa_A 80 NELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQV 155 (433)
T ss_dssp HHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccC
Confidence 45666665431 234689999999999999999999999873 167999999874 233443333333
Q ss_pred cccccccc-cCCcccH-HHHHHHhcccCCCEEEEccchh
Q 007957 263 MIATEELF-LYSSTDI-EDIVEKVQPLSPRALIIDSIQT 299 (583)
Q Consensus 263 ~i~~~~i~-i~~~~~~-e~i~~~i~~~~p~lVVIDsi~~ 299 (583)
+++.-... -.++.++ .+.++.+...+++++|||.+..
T Consensus 156 ~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 156 GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp TCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 33210000 0011111 3334444445789999998753
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.09 E-value=0.00059 Score=74.52 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=51.5
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
|+.+..-++|.|+||+|||+++..++... +.++++++..+-.. .+.-.....+..+++
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~--------~~~fv~vn~~~l~~--------------~~~g~~~~~~~~~f~ 291 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMS--------------KLAGESESNLRKAFE 291 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC--------SSEEEEEEHHHHHT--------------SCTTHHHHHHHHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh--------CCCEEEEEchHhhh--------------hhcchhHHHHHHHHH
Confidence 35566679999999999999999997654 34688887432110 000001122445555
Q ss_pred HhcccCCCEEEEccchhhhh
Q 007957 283 KVQPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~ 302 (583)
......|.+|+||++..+..
T Consensus 292 ~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 292 EAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp HHHHTCSEEEEEESHHHHCB
T ss_pred HHHhcCCcEEEecchhhhcc
Confidence 66667789999999988753
No 203
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.07 E-value=0.00031 Score=65.76 Aligned_cols=40 Identities=30% Similarity=0.552 Sum_probs=31.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
++.+|.+++|.|+||+|||||+..++.. . +.+.+++++++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~------~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P------GVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S------SSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c------CCCeEEEcccc
Confidence 3678999999999999999999999875 2 23467777653
No 204
>2pnl_A Protease VP4; acyl-enzyme, Ser/Lys DYAD, viral protease, substrate complex, product complex, hydrolase; 2.21A {Infectious pancreatic necrosis virus} PDB: 2pnm_A 3rbp_A 3r0b_A
Probab=97.06 E-value=0.0012 Score=61.56 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred cEEEEecCCcccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcc-eeecccHHHHHHHHHHcCCCEEEE
Q 007957 476 AIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE-LRMVSRMEKRVSTVAKLGYRKCIV 548 (583)
Q Consensus 476 dI~vnl~~g~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~-vr~V~gi~~~i~~A~~~G~k~~iv 548 (583)
+|.|-=-.+-...|+|+-||||+++ +.....+| +++|+|||.=+|+ |.||.++..|...|++.|.+ +|=
T Consensus 105 ~i~v~~~~~p~~~G~S~~LAial~~--~~i~k~IP-~~aFTGeI~edG~~I~pV~~i~~K~~iA~~~gL~-LIg 174 (203)
T 2pnl_A 105 NIVVEKIFAGPIMGPSAQLGLSLLV--NDIEDGVP-RMVFTGEIADDEETIIPICGVDIAAIAAHEQGLP-LIG 174 (203)
T ss_dssp CEEEEECSSCCBCSSTTHHHHHHHH--HTCCSBCC-SSEECCEECTTSCBEECCSCHHHHHHHHHHTTCC-EEE
T ss_pred ceEEeeccCCcccCchHHHHHHHHH--hhhcccCC-CeEEEeEecCCCcEEEecCchhHHHHHHHHcCCe-eec
Confidence 3444444444579999999999987 33323455 9999999999999 99999999999999999974 444
No 205
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.01 E-value=0.0017 Score=62.34 Aligned_cols=140 Identities=17% Similarity=0.128 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEE-EeCccCH-HHHHHHHHhcccccccc-ccCC----cccHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVY-VSGEESV-EQIGNRADRMMIATEEL-FLYS----STDIEDI 280 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLy-is~Ees~-~qi~~R~~rl~i~~~~i-~i~~----~~~~e~i 280 (583)
-++++.|.||+|||+++..++...+.-.....+.+.+| ...++-. +.+ .... ....+ .... ..++.+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~----~~~~-~k~~~~~~~~~~~~~~~~~~~ 80 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHT----YIET-DAKKLPKSTDEQLSAHDMYEW 80 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCE----EEEC-CTTTCSSCCSSCEEGGGHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccc----ccch-hhhhccccCcccccHHHHHHH
Confidence 48999999999999999887655431000001314444 4333211 000 0000 00000 0111 1223322
Q ss_pred HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEE
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLY 360 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~ 360 (583)
.. ....+..+|||||.|.++.......+ . .+++..|. .-+..+..+|+++|.... +. ..+.+.++..+.
T Consensus 81 ~~-~~~~~~~vliIDEAq~l~~~~~~~~e-~----~rll~~l~-~~r~~~~~iil~tq~~~~--l~--~~lr~ri~~~~~ 149 (199)
T 2r2a_A 81 IK-KPENIGSIVIVDEAQDVWPARSAGSK-I----PENVQWLN-THRHQGIDIFVLTQGPKL--LD--QNLRTLVRKHYH 149 (199)
T ss_dssp TT-SGGGTTCEEEETTGGGTSBCCCTTCC-C----CHHHHGGG-GTTTTTCEEEEEESCGGG--BC--HHHHTTEEEEEE
T ss_pred hh-ccccCceEEEEEChhhhccCccccch-h----HHHHHHHH-hcCcCCeEEEEECCCHHH--Hh--HHHHHHhheEEE
Confidence 11 12334779999999997632211111 1 12333332 233457889999988422 21 225566666666
Q ss_pred EeC
Q 007957 361 MEG 363 (583)
Q Consensus 361 Le~ 363 (583)
+..
T Consensus 150 l~~ 152 (199)
T 2r2a_A 150 IAS 152 (199)
T ss_dssp EEE
T ss_pred EcC
Confidence 654
No 206
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.01 E-value=0.00095 Score=66.45 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
++.+++|.|.||+||||++..++..+... +..+++++.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~-----g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKN-----NIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCEEEEECch
Confidence 45789999999999999999999887642 4567767653
No 207
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.0017 Score=65.56 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=34.0
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
..|.+.+..|-.+. ++|.|++|+|||+++..++..+.... ....+++++..
T Consensus 31 ~~l~~~l~~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~ 81 (323)
T 1sxj_B 31 DRLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHELLGRS---YADGVLELNAS 81 (323)
T ss_dssp HHHHHHHHSCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGG---HHHHEEEECTT
T ss_pred HHHHHHHHcCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCc---ccCCEEEecCc
Confidence 45555555543333 89999999999999999998874320 02346666643
No 208
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00049 Score=63.65 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=27.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
-+.+|++++|.|++|+|||||++.+++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45899999999999999999999999988
No 209
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.96 E-value=0.0033 Score=63.04 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
+.-++|.|+||+|||+++..++..+. .++++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~--------~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN--------APFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT--------CCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEcch
Confidence 34688999999999999999988763 357777754
No 210
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.94 E-value=0.0016 Score=66.36 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=34.4
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..|-+.+..|-. ..+++++|+||+|||+++..++..+. ..+++++...
T Consensus 36 ~~l~~~l~~~~~-~~~~L~~G~~G~GKT~la~~la~~l~--------~~~~~i~~~~ 83 (324)
T 3u61_B 36 ETFKSITSKGKI-PHIILHSPSPGTGKTTVAKALCHDVN--------ADMMFVNGSD 83 (324)
T ss_dssp HHHHHHHHTTCC-CSEEEECSSTTSSHHHHHHHHHHHTT--------EEEEEEETTT
T ss_pred HHHHHHHHcCCC-CeEEEeeCcCCCCHHHHHHHHHHHhC--------CCEEEEcccc
Confidence 344455544432 35799999999999999999987653 3588888644
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.93 E-value=0.00015 Score=83.97 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=54.8
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccccccccc-CCcccHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIED 279 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i-~~~~~~e~ 279 (583)
.-|+.++..++|.|+||+|||||+..++..+.. +.+++++.+-.. .++ ..+..+..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~--------~~i~v~~~~l~~---------------~~~g~~~~~i~~ 561 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISIKGPELLT---------------MWFGESEANVRE 561 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC--------CCCCCCCSSSTT---------------CCTTTSSHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC--------CEEEEechHhhh---------------hhcCccHHHHHH
Confidence 347788999999999999999999999988643 344554432110 011 12234566
Q ss_pred HHHHhcccCCCEEEEccchhhh
Q 007957 280 IVEKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 280 i~~~i~~~~p~lVVIDsi~~l~ 301 (583)
+.+......|.+++||++..+.
T Consensus 562 ~f~~a~~~~p~vl~iDEid~l~ 583 (806)
T 1ypw_A 562 IFDKARQAAPCVLFFDELDSIA 583 (806)
T ss_dssp HHHHHHHHCSBCCCCSSHHHHC
T ss_pred HHHHHHhcCCeEEEEEChhhhh
Confidence 7777777789999999998875
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.00044 Score=80.09 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=66.2
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~ 282 (583)
|+.+|..++|.|+||+|||||++.++..+. ...+++++.+ +. +. ..-.....+..+++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~--------~~~i~v~~~~----l~------~~----~~g~~~~~l~~vf~ 291 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--------AFFFLINGPE----IM------SK----LAGESESNLRKAFE 291 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT--------CEEEEEEHHH----HS------SS----STTHHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC--------CcEEEEEchH----hh------hh----hhhhHHHHHHHHHH
Confidence 688999999999999999999999987643 3466666421 10 00 00000122344555
Q ss_pred HhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHH----cCCCcEEEecccC
Q 007957 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK----KTNIPVLLAGHVT 340 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk----~~g~tVIlisH~~ 340 (583)
......|.+++||++..+..... . . .....+.+...|..+.. ..++.++.+++..
T Consensus 292 ~a~~~~p~il~iDEid~l~~~~~-~-~-~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 292 EAEKNAPAIIFIDELDAIAPKRE-K-T-HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHCSEEEEEESGGGTSCTTS-C-C-CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred HHHhcCCcEEEeccHHHhhhccc-c-c-cchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 55556789999999987653211 1 1 11222344444544443 3355666666554
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.92 E-value=0.00018 Score=71.39 Aligned_cols=77 Identities=26% Similarity=0.444 Sum_probs=46.5
Q ss_pred cCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHH
Q 007957 201 GGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280 (583)
Q Consensus 201 gGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i 280 (583)
+...+.| ++|.|+||+|||+|+..++..+.. ++++++...-... ..+ .....+..+
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~~--------~~~~v~~~~~~~~------~~~--------~~~~~~~~~ 95 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEAHV--------PFFSMGGSSFIEM------FVG--------LGASRVRDL 95 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHHTC--------CCCCCCSCTTTTS------CSS--------SCSSSSSTT
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHhCC--------CEEEechHHHHHh------hcc--------hHHHHHHHH
Confidence 3334444 889999999999999999887532 3444443321100 000 111222334
Q ss_pred HHHhcccCCCEEEEccchhhh
Q 007957 281 VEKVQPLSPRALIIDSIQTVY 301 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~ 301 (583)
++.+....|.+|+||++..+.
T Consensus 96 ~~~a~~~~~~vl~iDEid~l~ 116 (268)
T 2r62_A 96 FETAKKQAPSIIFIDEIDAIG 116 (268)
T ss_dssp HHHHHHSCSCEEEESCGGGTT
T ss_pred HHHHHhcCCeEEEEeChhhhc
Confidence 444445678999999998874
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.90 E-value=0.00047 Score=72.32 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=63.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccc-ccccc--CCcccHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFL--YSSTDIEDI 280 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~-~~i~i--~~~~~~e~i 280 (583)
+.+|++++|.|++|+|||||+..++..+... ...+.+....... +.......++.. .+... +...++.+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~------~g~I~ie~~~e~~-~~~~~~~v~~v~~q~~~~~~~~~~t~~~~ 244 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFD------QRLITIEDVPELF-LPDHPNHVHLFYPSEAKEEENAPVTAATL 244 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTT------SCEEEEESSSCCC-CTTCSSEEEEECC----------CCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCC------ceEEEECCccccC-ccccCCEEEEeecCccccccccccCHHHH
Confidence 5789999999999999999999999877653 3466665321000 000000111111 00000 122345555
Q ss_pred HHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 281 ~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
+.......|+.+++|++... ++...|..+... ..+++.+.|...
T Consensus 245 i~~~l~~~pd~~l~~e~r~~----------------~~~~~l~~l~~g-~~~~l~t~H~~~ 288 (361)
T 2gza_A 245 LRSCLRMKPTRILLAELRGG----------------EAYDFINVAASG-HGGSITSCHAGS 288 (361)
T ss_dssp HHHHTTSCCSEEEESCCCST----------------HHHHHHHHHHTT-CCSCEEEEECSS
T ss_pred HHHHHhcCCCEEEEcCchHH----------------HHHHHHHHHhcC-CCeEEEEECCCC
Confidence 55555668999999998631 333344444332 345677778764
No 215
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.84 E-value=0.00078 Score=60.72 Aligned_cols=90 Identities=14% Similarity=0.099 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
+.-++|.|+||+|||+++..++... . +.++++........ ...+++ .
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~--------~-~~~~~~~~~~~~~~---------------------~~~~~~---~ 73 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG--------T-PWVSPARVEYLIDM---------------------PMELLQ---K 73 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT--------S-CEECCSSTTHHHHC---------------------HHHHHH---H
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC--------C-CeEEechhhCChHh---------------------hhhHHH---h
Confidence 3458999999999999998775321 1 46666654322211 122222 2
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.+..+++||++..+- ......+.+.|.+ ....++.+|+++...
T Consensus 74 a~~~~l~lDei~~l~----------~~~q~~Ll~~l~~-~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 74 AEGGVLYVGDIAQYS----------RNIQTGITFIIGK-AERCRVRVIASCSYA 116 (143)
T ss_dssp TTTSEEEEEECTTCC----------HHHHHHHHHHHHH-HTTTTCEEEEEEEEC
T ss_pred CCCCeEEEeChHHCC----------HHHHHHHHHHHHh-CCCCCEEEEEecCCC
Confidence 235799999998652 2223333333332 223456677776554
No 216
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.83 E-value=0.0009 Score=63.61 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.3
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|.+++|.|+||+|||||+..++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999999998776
No 217
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.82 E-value=0.0012 Score=63.21 Aligned_cols=41 Identities=34% Similarity=0.401 Sum_probs=32.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
..+|++++|.|+||+|||||+..+++.+... |..+.+++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-----g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-----GLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-----TCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-----CCceEEEecC
Confidence 4789999999999999999999999988752 2235566543
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.81 E-value=0.004 Score=60.69 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=34.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRA 259 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~ 259 (583)
..|+.+++.|++|+||||++..++.......+...+..+++.... +...++..++
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 357899999999999999887776654332111112256776543 3444555554
No 219
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.0029 Score=70.40 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=61.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH-HHHHHHHHhccccccccccCCcccHHHHHHH--
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV-EQIGNRADRMMIATEELFLYSSTDIEDIVEK-- 283 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~-~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~-- 283 (583)
+.+++|.|+||+||||++..++..+... +.+|++...-... ..+.. .++... .++.+++..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~-----g~~Vl~~ApT~~Aa~~L~e---~~~~~a--------~Tih~ll~~~~ 267 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL-----GLEVGLCAPTGKAARRLGE---VTGRTA--------STVHRLLGYGP 267 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHH---HHTSCE--------EEHHHHTTEET
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCeEEEecCcHHHHHHhHh---hhcccH--------HHHHHHHcCCc
Confidence 4689999999999999999999887764 6788888653322 22222 222211 111111110
Q ss_pred -------hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 284 -------VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 284 -------i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
-...++++|||||.+.+ +.. .+..|..... .+..+|+++...
T Consensus 268 ~~~~~~~~~~~~~dvlIIDEasml----------~~~----~~~~Ll~~~~-~~~~lilvGD~~ 316 (574)
T 3e1s_A 268 QGFRHNHLEPAPYDLLIVDEVSMM----------GDA----LMLSLLAAVP-PGARVLLVGDTD 316 (574)
T ss_dssp TEESCSSSSCCSCSEEEECCGGGC----------CHH----HHHHHHTTSC-TTCEEEEEECTT
T ss_pred chhhhhhcccccCCEEEEcCccCC----------CHH----HHHHHHHhCc-CCCEEEEEeccc
Confidence 11236799999999754 222 3333333322 477788887554
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.79 E-value=0.0043 Score=61.32 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.-++|.|+||+|||+|+..++...... +.++++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~-----~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRW-----QGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTT-----TSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCcc-----CCCeEEEecCCC
Confidence 3568999999999999999998765542 457888886554
No 221
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.79 E-value=0.0011 Score=62.97 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=32.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
.+|.++.|.|++|+||||++..++..+... +..+.|++++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~-----G~~~~~~d~d 62 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQK-----GKLCYILDGD 62 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-----CceEEEecCc
Confidence 679999999999999999999999988732 4445677753
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.78 E-value=0.0035 Score=67.09 Aligned_cols=50 Identities=4% Similarity=-0.037 Sum_probs=36.1
Q ss_pred HHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 279 ~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
+++..+. .+..+|+||+....+ +..++..+...+.+-.+..|++|+.++.
T Consensus 168 eilk~L~-~~~~vI~Vi~KtD~L---------t~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 168 VTMKKLD-SKVNIIPIIAKADAI---------SKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHTC-SCSEEEEEESCGGGS---------CHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHh-hCCCEEEEEcchhcc---------chHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 4555565 578899999998754 4556677777777755678999998874
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.78 E-value=0.0021 Score=74.94 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=55.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcC--CCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHD--LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~--~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
-++|.|+||+|||+++..++..+..... .-.+.++++++...-......+ + -....+..++..+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~----g--------~~~~~l~~~~~~~~~ 260 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR----G--------EFEERLKAVIQEVVQ 260 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------------CHHHHHHHHHHHHHT
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc----h--------HHHHHHHHHHHHHHh
Confidence 4789999999999999999998865311 0014568888753221100000 0 001224455555554
Q ss_pred c-CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 287 L-SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 287 ~-~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
. ++.+|+||++..+.... ......++.+.|+.+..+.++.+|..+.
T Consensus 261 ~~~~~iL~IDEi~~l~~~~------~~~g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 261 SQGEVILFIDELHTVVGAG------KAEGAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp TCSSEEEEECCC-------------------------HHHHHTTCCCEEEEEC
T ss_pred cCCCeEEEEecHHHHhccC------CccchHHHHHHHHHHHhCCCeEEEEecC
Confidence 3 57799999999875221 1111123445556655666677776654
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.0013 Score=61.09 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=32.0
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~ 248 (583)
.+|.+++|.|.+|+||||++..++..+... +.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~-----g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH-----GIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC-----CCcEEEECC
Confidence 679999999999999999999999887542 456777763
No 225
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.72 E-value=0.0057 Score=62.59 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc-c
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ-P 286 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~-~ 286 (583)
..++|.|+||+|||+|+..++..+. .+.++++..... ....+...+. .
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~--------~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 104 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS--------ANIKTTAAPMIE-----------------------KSGDLAAILTNL 104 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT--------CCEEEEEGGGCC-----------------------SHHHHHHHHHTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC--------CCeEEecchhcc-----------------------chhHHHHHHHhc
Confidence 3589999999999999999976642 346666543210 1111222222 2
Q ss_pred cCCCEEEEccchhh
Q 007957 287 LSPRALIIDSIQTV 300 (583)
Q Consensus 287 ~~p~lVVIDsi~~l 300 (583)
.++.+|+||+++.+
T Consensus 105 ~~~~vl~lDEi~~l 118 (338)
T 3pfi_A 105 SEGDILFIDEIHRL 118 (338)
T ss_dssp CTTCEEEEETGGGC
T ss_pred cCCCEEEEechhhc
Confidence 36789999999875
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.71 E-value=0.00095 Score=63.07 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|++++|.|+||+|||||+..+++.+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 578999999999999999999998874
No 227
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.69 E-value=0.0054 Score=67.17 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=36.0
Q ss_pred CCC-EEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCC
Q 007957 288 SPR-ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341 (583)
Q Consensus 288 ~p~-lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k 341 (583)
.|. +||||+++.++.. ....+.+.+..|.+.++..|+++|+++|...
T Consensus 296 lP~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT-------VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp CCEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CCcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 355 8999999887632 1235667777888888888999999999875
No 228
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.68 E-value=0.0051 Score=62.32 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
...++|.|+||+|||+|+..++..+. .++++++..... ...++...+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~--------~~~~~~~~~~~~-----------------------~~~~l~~~l~~ 86 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG--------VNLRVTSGPAIE-----------------------KPGDLAAILAN 86 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT--------CCEEEECTTTCC-----------------------SHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC--------CCEEEEeccccC-----------------------ChHHHHHHHHH
Confidence 35689999999999999999987653 356777653211 11222233332
Q ss_pred --cCCCEEEEccchhh
Q 007957 287 --LSPRALIIDSIQTV 300 (583)
Q Consensus 287 --~~p~lVVIDsi~~l 300 (583)
.++.+|+||+++.+
T Consensus 87 ~~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 87 SLEEGDILFIDEIHRL 102 (324)
T ss_dssp TCCTTCEEEETTTTSC
T ss_pred hccCCCEEEEECCccc
Confidence 35789999999865
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.014 Score=59.68 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=34.9
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..|...+..|-.+. ++|.|+||+||||++..++..+..... ....+++++..+
T Consensus 47 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~--~~~~~~~~~~~~ 99 (353)
T 1sxj_D 47 TVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDL--MKSRILELNASD 99 (353)
T ss_dssp HHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHH--HTTSEEEECSSS
T ss_pred HHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcc--cccceEEEcccc
Confidence 45555555553333 899999999999999999988752100 023566776543
No 230
>2gef_A Protease VP4; birnavirus, serine/lysine DYAD mechamism, lysine general base, hydrolase; 2.20A {Blotched snakehead virus}
Probab=96.60 E-value=0.004 Score=58.18 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=50.7
Q ss_pred CCcccccccccHHHHHHHHHcccCCCCCCceEEEEEecCCcceeecccHHHHHHHHHHcCCCEEEEeC
Q 007957 483 SGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550 (583)
Q Consensus 483 ~g~~~~gp~~DLaia~ailsa~~~~~~~~~~~~~GEl~L~G~vr~V~gi~~~i~~A~~~G~k~~ivP~ 550 (583)
+.-...|+|+-||||++.+. . .+| +++|+|||.= |+|.||.++..|...|++.|. .+|=|.
T Consensus 128 ~~p~f~G~S~~LAIAl~~~i--k--~VP-~~AFTGeI~e-G~I~pV~gi~lK~eiA~knGL-~LIgp~ 188 (217)
T 2gef_A 128 DMPAVAGQSSSIALALASSL--P--FVP-KAAYTGCLSG-TNVQPVQFGNLKARAAHKIGL-PLVGMT 188 (217)
T ss_dssp CCCCEESSTTHHHHHHHHHC--S--SCC-SSEEECEEET-TEEECBSCHHHHHHHHHTTTC-CEEECB
T ss_pred cCCccccchhHHHHHHHHhc--c--CCC-CeeEeeeccc-ceEEecCchhHHHHHHHHcCC-eeeccc
Confidence 33447999999999999333 3 345 9999999999 999999999999999999996 566665
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0048 Score=63.51 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la~ 233 (583)
++|.|+||+||||+++.++..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998754
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0014 Score=61.39 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=25.3
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|-.+|.+++|.|++|+|||||+..++....
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999999988753
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.56 E-value=0.0034 Score=59.71 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=34.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
..+|.+++|.|++|+|||||+..++..+... +..+.+++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-----~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-----GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-----CCeEEEeccC
Confidence 5678999999999999999999999988653 4567777654
No 234
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.54 E-value=0.0063 Score=64.25 Aligned_cols=69 Identities=22% Similarity=0.174 Sum_probs=52.7
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhc
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl 262 (583)
+.| |+ .-+|-.+ -+.+|+.++|.|++|+|||||+.+++..+..+.. +-.++|+-..+..+++..-.+.+
T Consensus 158 ~~t-Gi--raID~~~--pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~---~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 158 EDL-TA--RVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP---DCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp THH-HH--HHHHHHS--CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT---TSEEEEEEESSCHHHHHHHHTTC
T ss_pred ccc-cc--eeeeeee--eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC---CeeEEEEEecCChHHHHHHHHHh
Confidence 444 66 7788777 4788999999999999999999999988876532 34577887777777776654444
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.53 E-value=0.0011 Score=64.26 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+++|++++|.|++|+|||||+..+++.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999999876
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0023 Score=59.78 Aligned_cols=40 Identities=28% Similarity=0.471 Sum_probs=33.8
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
.+|.+++|.|.||+||||++..++..+... +.++.+++++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-----~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE-----GYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCeEEEeeHH
Confidence 578999999999999999999999988763 5678888643
No 237
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.47 E-value=0.0085 Score=61.06 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~q 254 (583)
.+.-++|.|+||+|||+++..++...... +.+.++++....+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-----~~~~v~v~~~~~~~~ 67 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARS-----DRPLVTLNCAALNES 67 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCS-----SSCCCEEECSSCCHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCccc-----CCCeEEEeCCCCChH
Confidence 34568999999999999999998765542 457788876654443
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.45 E-value=0.00039 Score=77.98 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la~ 233 (583)
++|.|++|+|||||+..+++...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 899999999999999999987644
No 239
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.45 E-value=0.0067 Score=65.41 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=27.3
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
..|.+.+..|-. ..++|.|+||+|||||+..++..+.
T Consensus 39 ~~L~~~i~~~~~--~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHL--HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCC--CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555544322 4689999999999999999987753
No 240
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.44 E-value=0.0052 Score=57.82 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=51.8
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccC--CcccHHHHHHHhc
Q 007957 209 LVLIG-GDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLY--SSTDIEDIVEKVQ 285 (583)
Q Consensus 209 vilI~-G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~--~~~~~e~i~~~i~ 285 (583)
++.|+ +..|+||||++..+|..++.. +.+|++++.+.... +...+. ....++.++ ....+.++++.+.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~-----g~~vlliD~D~~~~-~~~~~~---~~~~~~~~~~~~~~~l~~~l~~l~ 73 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRS-----GYNIAVVDTDPQMS-LTNWSK---AGKAAFDVFTAASEKDVYGIRKDL 73 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCTTCH-HHHHHT---TSCCSSEEEECCSHHHHHTHHHHT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC-----CCeEEEEECCCCCC-HHHHHh---cCCCCCcEEecCcHHHHHHHHHhc
Confidence 34444 788999999999999999984 78999999874322 222211 122223332 2334555555554
Q ss_pred ccCCCEEEEccchh
Q 007957 286 PLSPRALIIDSIQT 299 (583)
Q Consensus 286 ~~~p~lVVIDsi~~ 299 (583)
. ++++||||.+..
T Consensus 74 ~-~yD~viiD~~~~ 86 (206)
T 4dzz_A 74 A-DYDFAIVDGAGS 86 (206)
T ss_dssp T-TSSEEEEECCSS
T ss_pred C-CCCEEEEECCCC
Confidence 3 489999998753
No 241
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.44 E-value=0.0028 Score=66.06 Aligned_cols=55 Identities=29% Similarity=0.268 Sum_probs=42.3
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.+.| |+ .-+|.++ -+.+|+.++|.|+||+|||||+..+++....+ ..++.+.++.
T Consensus 54 ~~~t-g~--~ald~ll--~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~------~g~i~~~G~~ 108 (347)
T 2obl_A 54 PFIL-GV--RAIDGLL--TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD------IIVLALIGER 108 (347)
T ss_dssp EECC-SC--HHHHHHS--CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS------EEEEEEESCC
T ss_pred ecCC-CC--EEEEeee--eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC------EEEEEEeccc
Confidence 4444 55 7788885 58999999999999999999999999987643 3355555554
No 242
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.41 E-value=0.0033 Score=64.23 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=32.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh--hhcCCCCCccEEEEeCc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA--DVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la--~~~~~~~~~~VLyis~E 249 (583)
.+|.+++|.|++|+|||||+..+++.+. .. .+.+.+++.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-----~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-----CCeEEEEecC
Confidence 6789999999999999999999998876 33 3457776654
No 243
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.41 E-value=0.0019 Score=66.16 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=27.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+++|++++|.|+||+|||||+..+++.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999999999987
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0016 Score=61.98 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.+|.+++|.|+||+|||||+..++..+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999998764
No 245
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.35 E-value=0.0037 Score=67.39 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=52.3
Q ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCc-ccHH
Q 007957 200 LGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS-TDIE 278 (583)
Q Consensus 200 LgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~-~~~e 278 (583)
+..|..++.-++|.|+||+|||+|+..++..+.. ..+.+++++.+-.. -+ ..+ ..+.
T Consensus 56 ~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~------~~~~~~~~~~~~~~---------------~~-~~~~~~~~ 113 (456)
T 2c9o_A 56 IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS------KVPFCPMVGSEVYS---------------TE-IKKTEVLM 113 (456)
T ss_dssp HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT------TSCEEEEEGGGGCC---------------SS-SCHHHHHH
T ss_pred HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC------CceEEEEeHHHHHH---------------Hh-hhhhHHHH
Confidence 3345566667899999999999999999988653 24577776532110 00 111 1133
Q ss_pred HHHHHh---cccCCCEEEEccchhhhh
Q 007957 279 DIVEKV---QPLSPRALIIDSIQTVYL 302 (583)
Q Consensus 279 ~i~~~i---~~~~p~lVVIDsi~~l~~ 302 (583)
++.... ....|.+|+||++..+..
T Consensus 114 ~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 114 ENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp HHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhhhhcCCcEEEEechhhccc
Confidence 344443 455789999999988763
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.34 E-value=0.0022 Score=60.56 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+|.+++|.|+||+||||++..++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999998876
No 247
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.34 E-value=0.012 Score=63.29 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCc-cEEEEeCcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPS-PVVYVSGEE 250 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~-~VLyis~Ee 250 (583)
.++|.|+||+||||++..++..+... +. .++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~-----~~~~il~~a~T~ 84 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST-----GETGIILAAPTH 84 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-----CCceEEEecCcH
Confidence 99999999999999999999988764 33 677776543
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.34 E-value=0.0082 Score=62.49 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=50.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHH-------HHHHHHhccccccccccCC----
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ-------IGNRADRMMIATEELFLYS---- 273 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~q-------i~~R~~rl~i~~~~i~i~~---- 273 (583)
..+.+++|.|+||+|||||+..++..+... ++++..+..+..... -+.|+..++... ..++.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~-----~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~-~~~v~~~~~~ 145 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER-----GHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDM-NAYIRPSPTR 145 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCC----------------CCSTTCT-TEEEECC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc-----CCeEEEEeecCCCCCcCcchhchHHHHHHhcCCC-CEEEEecCCc
Confidence 457899999999999999999999987664 567777776543321 123444443322 122110
Q ss_pred ------cccHHHHHHHhcccCCCEEEEccch
Q 007957 274 ------STDIEDIVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 274 ------~~~~e~i~~~i~~~~p~lVVIDsi~ 298 (583)
..+..+.+..+...+.+++++|.+.
T Consensus 146 ~~lgg~tr~~~~~~~~~~~~~~~~iliDT~G 176 (349)
T 2www_A 146 GTLGGVTRTTNEAILLCEGAGYDIILIETVG 176 (349)
T ss_dssp ------CTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred cccccchHHHHHHHHhhccCCCCEEEEECCC
Confidence 1112222223334578999999876
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.32 E-value=0.0025 Score=62.56 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=25.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+|.+++|.|++|+|||||+..+++.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4788999999999999999999999876
No 250
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.31 E-value=0.023 Score=58.52 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~ 233 (583)
..++|.|++|+||||++..++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999988754
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.30 E-value=0.0025 Score=60.65 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.0
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.+|.+++|.|++|+|||||+..+++.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999999998765
No 252
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.24 E-value=0.004 Score=62.61 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la 232 (583)
++|.|+||+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999998874
No 253
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.24 E-value=0.0044 Score=64.30 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=34.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
+.+|.+++|.|+||+|||||+..+++.+... ++++.+++.+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-----~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAA-----GHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-----CCEEEEEEEc
Confidence 4679999999999999999999999988764 4577777644
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.23 E-value=0.0073 Score=70.31 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh-ccccccccccCCcccHHHHHHHhcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR-MMIATEELFLYSSTDIEDIVEKVQP 286 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r-l~i~~~~i~i~~~~~~e~i~~~i~~ 286 (583)
..++|.|+||+|||+++..++..+... +.+.++++..+-.+... ... ++.... + ........+...+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-----~~~~i~i~~~~~~~~~~--~s~l~g~~~~--~-~G~~~~g~l~~~~~~ 658 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-----EEAMIRIDMTEYMEKHA--VSRLIGAPPG--Y-VGYEEGGQLTEAVRR 658 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-----GGGEEEECTTTCCSSGG--GGGC-----------------CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-----CCcEEEEechhccchhH--HHHHcCCCCC--C-cCccccchHHHHHHh
Confidence 578999999999999999999988653 46788888654322100 001 111100 0 011111234444555
Q ss_pred cCCCEEEEccchhh
Q 007957 287 LSPRALIIDSIQTV 300 (583)
Q Consensus 287 ~~p~lVVIDsi~~l 300 (583)
..+.+|+||++..+
T Consensus 659 ~~~~vl~lDEi~~l 672 (854)
T 1qvr_A 659 RPYSVILFDEIEKA 672 (854)
T ss_dssp CSSEEEEESSGGGS
T ss_pred CCCeEEEEeccccc
Confidence 56789999999754
No 255
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.22 E-value=0.015 Score=64.19 Aligned_cols=99 Identities=19% Similarity=0.132 Sum_probs=54.0
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH---hhhcCCCCCccEEEEeCccC-HHHHHHHH----Hhccccc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII---ADVHDLGEPSPVVYVSGEES-VEQIGNRA----DRMMIAT 266 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~l---a~~~~~~~~~~VLyis~Ees-~~qi~~R~----~rl~i~~ 266 (583)
.|.+.|..+-....+++|.|++|+|||||+.+++... ... -...++|++.... ...+...+ ..++...
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~ 210 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGC----FPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDE 210 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHH----CTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhh----CCCceEEEECCCCchHHHHHHHHHHHHHhcccc
Confidence 4555664322346799999999999999999997543 221 1235888876443 33333322 2222110
Q ss_pred cccccCCcccHHH----HHHHhccc-CCCEEEEccch
Q 007957 267 EELFLYSSTDIED----IVEKVQPL-SPRALIIDSIQ 298 (583)
Q Consensus 267 ~~i~i~~~~~~e~----i~~~i~~~-~p~lVVIDsi~ 298 (583)
. ..-....+.+. +...+... ++-+||||++.
T Consensus 211 ~-~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 211 S-FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp C-SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred c-cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 0 00011223333 33333332 57899999985
No 256
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.21 E-value=0.02 Score=63.01 Aligned_cols=110 Identities=12% Similarity=0.172 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH----HHhhhcCCCCCccEEEEeCccC----HHHHHHH-HHhcccccc--ccccCCc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAA----IIADVHDLGEPSPVVYVSGEES----VEQIGNR-ADRMMIATE--ELFLYSS 274 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~----~la~~~~~~~~~~VLyis~Ees----~~qi~~R-~~rl~i~~~--~i~i~~~ 274 (583)
...++.|.|..|+|||||+.+++. .+.. .-..++|++.... ...+... +..++.... .+.-...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-----~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 225 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-----NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH 225 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-----TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-----cCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccccccccccc
Confidence 457999999999999999999986 2222 1246888886553 3333332 344443321 1111122
Q ss_pred ccH----HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 275 TDI----EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 275 ~~~----e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
.+. ..+.+.+...+.-+||+|.+... .++ .+....|..||+++...
T Consensus 226 ~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~~--------~~~~~~gs~ilvTTR~~ 275 (549)
T 2a5y_B 226 VTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ETI--------RWAQELRLRCLVTTRDV 275 (549)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HHH--------HHHHHTTCEEEEEESBG
T ss_pred ccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hhh--------cccccCCCEEEEEcCCH
Confidence 222 33444444433569999988642 122 22233688888887653
No 257
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.19 E-value=0.007 Score=55.26 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 287 ~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.+|+++++||+++.+ |......+...|.++.++ +.+||+++|.. + +..+||.++.|+.
T Consensus 80 ~~p~lllLDEPt~~L---------D~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~--------~~~~~d~ii~l~~ 137 (148)
T 1f2t_B 80 GEISLLILDEPTPYL---------DEERRRKLITIMERYLKK-IPQVILVSHDE-E--------LKDAADHVIRISL 137 (148)
T ss_dssp SSCSEEEEESCSCTT---------CHHHHHHHHHHHHHTGGG-SSEEEEEESCG-G--------GGGGCSEEEEEEE
T ss_pred CCCCEEEEECCCccC---------CHHHHHHHHHHHHHHHcc-CCEEEEEEChH-H--------HHHhCCEEEEEEc
Confidence 479999999998765 555566677777766554 88999999986 4 6778999999963
No 258
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.18 E-value=0.0048 Score=70.78 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=45.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcccC
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~~ 288 (583)
.++|.|+||+|||+++..++..+... +.++++++..+-.+. .. .. ...+...+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-----~~~~i~i~~s~~~~~--------------~~-~~---~~~l~~~~~~~~ 579 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-----EESMIRIDMSEYMEK--------------HS-TS---GGQLTEKVRRKP 579 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-----TTCEEEEEGGGGCSS--------------CC-CC------CHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-----CcceEEEechhcccc--------------cc-cc---cchhhHHHHhCC
Confidence 68999999999999999999987543 567888875432110 00 00 112233444456
Q ss_pred CCEEEEccchhh
Q 007957 289 PRALIIDSIQTV 300 (583)
Q Consensus 289 p~lVVIDsi~~l 300 (583)
+.+|+||++..+
T Consensus 580 ~~vl~lDEi~~~ 591 (758)
T 3pxi_A 580 YSVVLLDAIEKA 591 (758)
T ss_dssp SSEEEEECGGGS
T ss_pred CeEEEEeCcccc
Confidence 789999999754
No 259
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.18 E-value=0.015 Score=65.01 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNR 258 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R 258 (583)
+.+++|.|+||+||||++..++..+..... ..+.+++.... .....++.+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHH
Confidence 579999999999999999988877763210 12346776653 2333444443
No 260
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.16 E-value=0.0081 Score=62.55 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
.-+++|+|.||+|||||+..++..++.. +.+|+.++.+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~-----g~kV~vi~~Dp~ 118 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER-----GHRVAVLAVDPS 118 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC-----CCceEEEecCCC
Confidence 4589999999999999999999988764 678998887643
No 261
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.16 E-value=0.0038 Score=58.17 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=25.7
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
|+..+.+++|.|.||+||||++..++..+
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999999998765
No 262
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.15 E-value=0.0064 Score=65.39 Aligned_cols=54 Identities=30% Similarity=0.294 Sum_probs=42.7
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
.+.| |+ .-||.++ -+.+|+.++|.|++|+|||||+..+++..... ..++.+.++
T Consensus 140 ~~~t-g~--~vld~vl--~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~------~G~i~~~G~ 193 (438)
T 2dpy_A 140 VLDT-GV--RAINALL--TVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD------VIVVGLIGE 193 (438)
T ss_dssp BCCC-SC--HHHHHHS--CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS------EEEEEEESC
T ss_pred ecCC-Cc--eEEeeeE--EecCCCEEEEECCCCCCHHHHHHHHhcccCCC------eEEEEEece
Confidence 4444 55 6788885 58999999999999999999999999887553 346677776
No 263
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.14 E-value=0.015 Score=54.34 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
.++.|.|.+|+|||||+..++..+... +.+|..+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-----g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-----GWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-----CCeeeEEEeC
Confidence 378999999999999999999988763 5677777744
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.13 E-value=0.0018 Score=62.86 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHH-HHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMA-AII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia-~~l 231 (583)
+.+|++++|.|++|+|||||+..++ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999999998 765
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.12 E-value=0.004 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|.+++|.|+||+||||++..++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999998764
No 266
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.11 E-value=0.0014 Score=71.86 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=52.5
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccc-cccccCCcccHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIEDIVE 282 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~-~~i~i~~~~~~e~i~~ 282 (583)
+..|..++|.|++|+|||||+..+++.+.. ..+++.+...... ++.. .....+.. ..+ .....++.+++.
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~------~~giitied~~E~-~~~~-~~~v~~~~r~~~-~~~~~~~~~~l~ 327 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPP------DAKVVSIEDTREI-KLYH-ENWIAEVTRTGM-GEGEIDMYDLLR 327 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCT------TCCEEEEESSCCC-CCCC-SSEEEEECBCCS-SSCCBCHHHHHH
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCC------CCCEEEEcCcccc-cCCC-CCeEEEEeeccc-ccCCcCHHHHHH
Confidence 367889999999999999999999887754 3456665432100 0000 00000000 011 112345666776
Q ss_pred HhcccCCCEEEEccch
Q 007957 283 KVQPLSPRALIIDSIQ 298 (583)
Q Consensus 283 ~i~~~~p~lVVIDsi~ 298 (583)
..-..+|++++++++.
T Consensus 328 ~~LR~~PD~iivgEir 343 (511)
T 2oap_1 328 AALRQRPDYIIVGEVR 343 (511)
T ss_dssp TTGGGCCSEEEESCCC
T ss_pred HhhccCCCeEEeCCcC
Confidence 6667899999999985
No 267
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.011 Score=59.65 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=26.7
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.|...+..|-.+ -++|.|+||+||||++..++..+.
T Consensus 36 ~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 36 RLKHYVKTGSMP--HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHTCCC--EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHhc
Confidence 444555444222 389999999999999999998864
No 268
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.10 E-value=0.0093 Score=59.96 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=38.3
Q ss_pred hhhhHHhcCCccCCeEEEEEc---CCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 194 NEVARVLGGGLVPGSLVLIGG---DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G---~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
.++-+.+. ..+.++.|++ ..|+||||++..+|..++.. +.+|+.++.+..
T Consensus 24 ~~~~r~~~---~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~-----G~rVlliD~D~q 76 (298)
T 2oze_A 24 EELRRILS---NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL-----NLKVLMIDKDLQ 76 (298)
T ss_dssp HHHHHHHH---HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT-----TCCEEEEEECTT
T ss_pred HHHHHHhc---CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC-----CCeEEEEeCCCC
Confidence 44555553 2456677775 99999999999999999874 789999998754
No 269
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.07 E-value=0.0053 Score=58.69 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=33.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~ 248 (583)
+.+|.+++|.|.+|+||||++..++..+... .+.+++++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~----~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD----RRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH----HCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc----cCCcEEEECC
Confidence 4678999999999999999999999988632 1456888873
No 270
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.03 E-value=0.013 Score=56.42 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=30.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.+..+..|+||||++..+|..++.. +.+|++++.+.
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~-----g~~VlliD~D~ 41 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGDR-----GRKVLAVDGDL 41 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhc-----CCeEEEEeCCC
Confidence 3445688999999999999999874 67999999875
No 271
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.02 E-value=0.0049 Score=60.93 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=30.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
...+.+++|.|+||+||||++..++..+. ..+.+++++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--------~~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--------GNIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--------TCCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--------CCcEEEecHH
Confidence 34578999999999999999999987653 2356777654
No 272
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.98 E-value=0.019 Score=53.77 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=49.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHH------HHHHHhccccc------ccc-----
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQI------GNRADRMMIAT------EEL----- 269 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi------~~R~~rl~i~~------~~i----- 269 (583)
-.+++|.|++|+|||||+..++..+... +.++..+..+...-.+ ..|+...|... ...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~-----g~~v~~i~~~~~~~~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR-----GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECCC------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc-----CCceeEEeeCCCccccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 4589999999999999999999887653 4455555432211001 01111223211 000
Q ss_pred -ccCCcccHHHHHHHhcccCCCEEEEccch
Q 007957 270 -FLYSSTDIEDIVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 270 -~i~~~~~~e~i~~~i~~~~p~lVVIDsi~ 298 (583)
+......+++++......+.|+++|..+.
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k 110 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFK 110 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCS
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHh
Confidence 11123567777765544456999998764
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.97 E-value=0.0031 Score=59.17 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|.+++|.|+||+|||||+..++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999998875
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.97 E-value=0.0042 Score=59.44 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
++|.+++|.|++|+|||||+..++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999987754
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.97 E-value=0.0046 Score=58.56 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+|.+++|.|+||+||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3678899999999999999999998776
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.95 E-value=0.0039 Score=58.29 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~ 229 (583)
|.+++|.|+||+|||||+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67999999999999999999975
No 277
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.94 E-value=0.0066 Score=64.91 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=54.8
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~ 274 (583)
-|+.++ ..+|.+++|.|++|+|||||+..+++.+... .+.++++.- +.+.. .. ++....+.--..
T Consensus 158 ~L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l~~~-----~g~I~~~ed--~ie~~---~~--~~~q~~v~~~~g 222 (418)
T 1p9r_A 158 NFRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQELNSS-----ERNILTVED--PIEFD---ID--GIGQTQVNPRVD 222 (418)
T ss_dssp HHHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-----TSCEEEEES--SCCSC---CS--SSEEEECBGGGT
T ss_pred HHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-----CCEEEEecc--cchhc---cC--CcceEEEccccC
Confidence 466665 3789999999999999999999999988653 345666542 21100 00 000000000001
Q ss_pred ccHHHHHHHhcccCCCEEEEccch
Q 007957 275 TDIEDIVEKVQPLSPRALIIDSIQ 298 (583)
Q Consensus 275 ~~~e~i~~~i~~~~p~lVVIDsi~ 298 (583)
..+...+..+-..+|++++++++.
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCHHHHHHHHhccCCCeEEEcCcC
Confidence 245555655556689999999874
No 278
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.93 E-value=0.012 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.+..+..|+||||++..+|..++.. +.+|++++.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~-----g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQL-----GHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHT-----TCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhC-----CCcEEEEECCC
Confidence 44557899999999999999999874 67999999875
No 279
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.86 E-value=0.035 Score=58.09 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=34.1
Q ss_pred cCCeEEEEE-cCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 205 VPGSLVLIG-GDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 205 ~~GsvilI~-G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
.++.++.|+ |..|+||||++..+|..++.. +.+|++++.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~-----g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM-----GKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH-----TCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC-----CCCEEEEECC
Confidence 346777776 599999999999999999985 6799999977
No 280
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.86 E-value=0.011 Score=57.68 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=31.8
Q ss_pred eEEEE-EcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLI-GGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI-~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.++.| .+..|+||||++..+|..++.. +.+|++++.+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~-----g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQK-----GKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC-----CCcEEEEECCC
Confidence 34444 6788999999999999999974 78999999875
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.85 E-value=0.007 Score=62.94 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
++.-++|.|+||+|||+++..++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568999999999999999998775
No 282
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.83 E-value=0.024 Score=60.90 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=53.6
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe-CccCHHHHHHHHHhccc-cccccccCCcccHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS-GEESVEQIGNRADRMMI-ATEELFLYSSTDIEDI 280 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis-~Ees~~qi~~R~~rl~i-~~~~i~i~~~~~~e~i 280 (583)
....-.+++|.|.||+||||++.+++.. .++++++ ..+..++++.++...+. ...+ ..-.+++..
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~~----------~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~---~~V~T~dsf 223 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVNF----------EEDLILVPGRQAAEMIRRRANASGIIVATK---DNVRTVDSF 223 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCCT----------TTCEEEESCHHHHHHHHHHHTTTSCCCCCT---TTEEEHHHH
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcc----------CCeEEEeCCHHHHHHHHHHhhhcCcccccc---ceEEEeHHh
Confidence 3467789999999999999999887531 2356665 44556677777654332 1111 122345555
Q ss_pred HHHhccc---CCCEEEEccchhh
Q 007957 281 VEKVQPL---SPRALIIDSIQTV 300 (583)
Q Consensus 281 ~~~i~~~---~p~lVVIDsi~~l 300 (583)
+-.-... ..++|||||.+.+
T Consensus 224 L~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 224 LMNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp HHTTTSSCCCCCSEEEEETGGGS
T ss_pred hcCCCCCCCCcCCEEEEeCcccC
Confidence 4332222 3799999999743
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.82 E-value=0.0043 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
|.+++|.|+||+||||++..++..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.78 E-value=0.012 Score=56.64 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+++|.|+||+||+|.+..++..+ .+.++|..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----------g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----------GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----------CCeEEcHHH
Confidence 57889999999999999998764 266787543
No 285
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.75 E-value=0.011 Score=67.65 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~ 283 (583)
.+.-++|.|+||+|||+++..++..+....-. ..+..++.++...-. .+ ....-..+..+..+++.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~---------~~---~~~~g~~e~~l~~~~~~ 273 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL---------AG---TKYRGDFEKRFKALLKQ 273 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------CC---CCCSSCHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh---------cc---ccccchHHHHHHHHHHH
Confidence 45668999999999999999999887542100 001223333221100 00 00000001234556666
Q ss_pred hcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 284 i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
+...++.+|+||++..+..... ..+... +..+.|..+..+.++.+|.++.
T Consensus 274 ~~~~~~~iL~IDEi~~l~~~~~--~~~~~~---~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 274 LEQDTNSILFIDEIHTIIGAGA--ASGGQV---DAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp HSSSSCEEEEETTTTTTTTSCC--SSSCHH---HHHHHHSSCSSSCCCEEEEEEC
T ss_pred HHhcCCeEEEEechHHHhhcCC--CCcchH---HHHHHHHHHHhCCCeEEEEEeC
Confidence 6666789999999998753211 111222 3344454444455566666554
No 286
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.75 E-value=0.0089 Score=62.40 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
...-++|.|+||+|||+++..++..+. .++++++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~--------~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD--------IPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT--------CCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC--------CCEEEecch
Confidence 445689999999999999999987652 356776643
No 287
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.70 E-value=0.022 Score=61.55 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=45.9
Q ss_pred ccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHH
Q 007957 185 RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQI 255 (583)
Q Consensus 185 Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi 255 (583)
.+.| |+ .-+|.+. -+.+|+.++|.|++|+|||||+..++....... +.-++|..--+-....
T Consensus 134 ~l~T-Gi--r~ID~L~--pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~----~~i~V~~~iGerttev 195 (473)
T 1sky_E 134 ILET-GI--KVVDLLA--PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEH----GGISVFAGVGERTREG 195 (473)
T ss_dssp EECC-SC--HHHHHHS--CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHT----CCCEEEEEESSCHHHH
T ss_pred cccc-cc--hHHHHHh--hhccCCEEEEECCCCCCccHHHHHHHhhhhhcc----CcEEEEeeeccCchHH
Confidence 4555 88 7899886 466899999999999999999999999877642 3345666544444433
No 288
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.70 E-value=0.045 Score=53.76 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhcccc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~ 265 (583)
.-++.|.|++|+||||++..++..+. ..|++...-...+...+...+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg----------~~~~d~g~~~r~~~~~~~~~gi~ 57 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG----------ARYLDTGAMYRIATLAVLRAGAD 57 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT----------CEEEEHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC----------CCcccCCcHHHHHHHHHHHcCCC
Confidence 34899999999999999999987653 45676654444444333444543
No 289
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.68 E-value=0.081 Score=54.28 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
...+++.|++|+|||++++.++..+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 347999999999999999999988764
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.68 E-value=0.0087 Score=60.52 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=35.4
Q ss_pred hhhhHHhcCCc--cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 194 NEVARVLGGGL--VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 194 ~eLD~vLgGGi--~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
..++..+++.. ..+.+++|.|+||+||||++..++..+. ...+++|.+
T Consensus 18 ~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~--------~~~~~Is~D 67 (287)
T 1gvn_B 18 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ--------GNVIVIDND 67 (287)
T ss_dssp HHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT--------TCCEEECTH
T ss_pred HHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhC--------CCeEEEech
Confidence 45666666533 3578999999999999999999976542 136777763
No 291
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.083 Score=53.81 Aligned_cols=103 Identities=16% Similarity=0.271 Sum_probs=59.7
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc---CHHHHHHHHHhcccccccccc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE---SVEQIGNRADRMMIATEELFL 271 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee---s~~qi~~R~~rl~i~~~~i~i 271 (583)
.|-+.+..|- ...++++|+||+||||++..++.....-. .....+++++.+. ..+
T Consensus 8 ~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~--~~~~d~~~l~~~~~~~~id------------------ 65 (305)
T 2gno_A 8 TLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFP--PKASDVLEIDPEGENIGID------------------ 65 (305)
T ss_dssp HHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSC--CCTTTEEEECCSSSCBCHH------------------
T ss_pred HHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhh--ccCCCEEEEcCCcCCCCHH------------------
Confidence 3444444442 46899999999999999999987532100 0122466665431 222
Q ss_pred CCcccHHHHHHHhccc----CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcC--CCcEEEec
Q 007957 272 YSSTDIEDIVEKVQPL----SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT--NIPVLLAG 337 (583)
Q Consensus 272 ~~~~~~e~i~~~i~~~----~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~--g~tVIlis 337 (583)
++.++++.+... +.+++|||++..+- .+..+.|.++..+. ++.+|+++
T Consensus 66 ----~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 66 ----DIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp ----HHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred ----HHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhCCCCCeEEEEEE
Confidence 233344443322 36899999998762 12345666666664 44455554
No 292
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.60 E-value=0.0066 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=30.0
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..|...+. |+|+...++|+|+||+||||+++.++..+
T Consensus 46 ~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445554 58887789999999999999999998876
No 293
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.59 E-value=0.016 Score=63.56 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..++++.|.||+||||++..++..+... +..+..|+.++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~-----~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI-----GVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc-----CCCeEEecccH
Confidence 4689999999999999999999887542 34566676543
No 294
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.54 E-value=0.058 Score=59.63 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=42.9
Q ss_pred CEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 290 ~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
-+||||++..++... ...+.+.+..|.+.++..|+.+|+.+|......+. ..+...+...+.|.
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~--~~Iran~~~RI~lr 408 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKARAAGIHLILATQRPSVDVIT--GLIKANIPTRIAFQ 408 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSC--HHHHHTCCEEEEEC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHhhCCeEEEEEecCccccccc--HHHHhhhccEEEEE
Confidence 489999998876421 13456777888888899999999999987532322 22444455555554
No 295
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.52 E-value=0.051 Score=58.72 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=49.8
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGN 257 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~ 257 (583)
+.+.| |+ .-+|-++. +.+|+-++|.|++|+|||+|+.+++.+++.+. +.-++|.-..|..+++..
T Consensus 135 e~l~T-Gi--r~ID~l~p--igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~----~~v~V~~~iGER~rEv~e 199 (482)
T 2ck3_D 135 EILVT-GI--KVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH----GGYSVFAGVGERTREGND 199 (482)
T ss_dssp CEECC-SC--HHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHTTTTC----SSEEEEEEESCCHHHHHH
T ss_pred cCCcc-ce--EEEecccc--cccCCeeeeecCCCCChHHHHHHHHHhhHhhC----CCEEEEEECCCcchHHHH
Confidence 34556 88 89999884 67899999999999999999999999876542 245677766665555443
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.50 E-value=0.0082 Score=56.98 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE 249 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E 249 (583)
+.+|.+++|.|++|+||||++..++..+. .+.|++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------~~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP---------NCSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST---------TEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC---------CcEEEeCC
Confidence 46789999999999999999999875431 36677654
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.50 E-value=0.024 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
-.++|.|.+|+|||||+..++..... ..++..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~------~~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGN------EVKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTT------TSCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc------CCeEEEEecCC
Confidence 47899999999999999999988643 24577776654
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.49 E-value=0.0067 Score=57.63 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+|.+++|.|+||+|||||+..++..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678899999999999999999998765
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.41 E-value=0.013 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
|.+++|.|.||+||||++..++..+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999987754
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.40 E-value=0.015 Score=53.71 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+++|.|.||+||||++..++..+... +..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-----g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-----GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-----TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-----CceEEEEE
Confidence 68999999999999999999887642 45677775
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.40 E-value=0.0097 Score=55.12 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..|.+++|.|.||+||||++..++..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998654
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.38 E-value=0.01 Score=62.49 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
++++|++++|.|+||+|||||+..++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999999999999999999753
No 303
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.35 E-value=0.01 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.+| +++|.|+||+|||||+..+...+.
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 456 999999999999999999988764
No 304
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.34 E-value=0.0098 Score=54.69 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|.+++|.|.||+||||++..++..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987653
No 305
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.34 E-value=0.1 Score=56.60 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=46.9
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~ 253 (583)
+.+.| |+ .-+|-++. +.+|+-++|.|++|+|||+|+.+++.+++... +.-++|.-.-|..+
T Consensus 147 e~l~T-Gi--rvID~l~p--igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~----~~v~V~~~iGER~r 207 (498)
T 1fx0_B 147 SIFET-GI--KVVNLLAP--YRRGGKIGLFGGAGVGKTVLIMELINNIAKAH----GGVSVFGGVGERTR 207 (498)
T ss_dssp CCCCC-SC--TTHHHHSC--CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTC----SSCEEEEEESCCSH
T ss_pred ccccc-ce--eEeeeecc--cccCCeEEeecCCCCCchHHHHHHHHHHHhhC----CCEEEEEEcccCcH
Confidence 44556 88 88999885 67899999999999999999999999887642 34566765444333
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.32 E-value=0.011 Score=57.89 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
++.+++|.|+||+|||||+..++..+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998665
No 307
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.26 E-value=0.085 Score=49.35 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=38.0
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh-cCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV-HDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~-~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||......+...... .....+.+++|+.-- +-..|+..++..+
T Consensus 31 ~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 31 ALPLALEG-----KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp HHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-----CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 45555543 458899999999998755444333221 101124578888754 4456777666554
No 308
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.26 E-value=0.045 Score=65.21 Aligned_cols=55 Identities=22% Similarity=0.056 Sum_probs=36.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+|.+.|..+-..-.++.|.|..|+|||||+.+++........ .....++|++...
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~-~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG-CFSGGVHWVSIGK 189 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTT-TSTTCEEEEECCS
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHh-hCCCeEEEEEECC
Confidence 455555322234578999999999999999998766421100 0134688998655
No 309
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.23 E-value=0.025 Score=59.70 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=50.0
Q ss_pred cccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH
Q 007957 186 IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR 258 (583)
Q Consensus 186 i~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R 258 (583)
+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|+.+++..+..+.. +-.++|+-..+..+++..-
T Consensus 159 ~~t-Gi--raID~l~P--igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~---dv~~V~~lIGER~~EV~d~ 223 (427)
T 3l0o_A 159 KIY-ST--RLIDLFAP--IGKGQRGMIVAPPKAGKTTILKEIANGIAENHP---DTIRIILLIDERPEEVTDI 223 (427)
T ss_dssp TCH-HH--HHHHHHSC--CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCT---TSEEEEEECSCCHHHHSSS
T ss_pred hhc-cc--hhhhhccc--ccCCceEEEecCCCCChhHHHHHHHHHHhhcCC---CeEEEEEEeccCcchHHHH
Confidence 344 66 78888875 678999999999999999999999998876422 3457788777777766543
No 310
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.20 E-value=0.012 Score=56.26 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.+|.+++|.|++|+|||||+..++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3688999999999999999999987653
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.20 E-value=0.012 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
+++|.|+||+||||++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998765
No 312
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.11 Score=58.94 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=39.2
Q ss_pred hcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHH
Q 007957 200 LGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRAD 260 (583)
Q Consensus 200 LgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~ 260 (583)
+.-++..|..++|.|++|+|||+.+.+.+...... .+.+++|+.--. -..|+..+++
T Consensus 39 i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 39 VKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----NGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp HHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHHHHHG
T ss_pred HHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----CCCeEEEEeCcHHHHHHHHHHHH
Confidence 33345568899999999999999997776654332 156899987543 3445555553
No 313
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.17 E-value=0.043 Score=54.07 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=32.4
Q ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLI-GGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI-~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.++.| .+..|+||||++..+|..++ . +.+|++++.+..
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~-----g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-K-----NNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-T-----TSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-C-----CCCEEEEECCCC
Confidence 455555 67889999999999999998 5 689999998753
No 314
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.16 E-value=0.013 Score=64.95 Aligned_cols=43 Identities=30% Similarity=0.355 Sum_probs=35.0
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.+|+++.|.|+||+|||||+..++..+... .+..+.+++++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~----~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEM----GGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTT----CSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhccc----CCceEEEECCcH
Confidence 5789999999999999999999999998764 123576787653
No 315
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.14 E-value=0.021 Score=65.35 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhccc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~ 287 (583)
..++|.|+||+|||+++..++..+. .+.++++..+..+... -...+|.... ++ .......+.+.+...
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~--------~~~~~i~~s~~~~~~~-~~~l~g~~~g--~~-g~~~~~~l~~~~~~~ 556 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG--------IELLRFDMSEYMERHT-VSRLIGAPPG--YV-GFDQGGLLTDAVIKH 556 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--------CEEEEEEGGGCSSSSC-CSSSCCCCSC--SH-HHHHTTHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc--------CCEEEEechhhcchhh-HhhhcCCCCC--Cc-CccccchHHHHHHhC
Confidence 3689999999999999999988762 3577777544221100 0000111110 00 000111234455556
Q ss_pred CCCEEEEccchhh
Q 007957 288 SPRALIIDSIQTV 300 (583)
Q Consensus 288 ~p~lVVIDsi~~l 300 (583)
.+.+|+||++..+
T Consensus 557 ~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 557 PHAVLLLDEIEKA 569 (758)
T ss_dssp SSEEEEEETGGGS
T ss_pred CCcEEEEeCcccc
Confidence 6789999999864
No 316
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.13 E-value=0.043 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~ 233 (583)
-.++|.|.+|+|||||+..++.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 46888899999999999999987654
No 317
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=95.10 E-value=0.11 Score=50.62 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=67.0
Q ss_pred EEEEc-CCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe----CccCH------HHHHHHHHhcccccc--ccccCC---
Q 007957 210 VLIGG-DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS----GEESV------EQIGNRADRMMIATE--ELFLYS--- 273 (583)
Q Consensus 210 ilI~G-~pG~GKTTLllqia~~la~~~~~~~~~~VLyis----~Ees~------~qi~~R~~rl~i~~~--~i~i~~--- 273 (583)
+.|+| .+|+|||++...++..+.+. +.+|.|+- +-... .+...++..+..+.+ +.+.+.
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~-----G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~p~ 81 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQ-----NIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQAV 81 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHT-----TCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESSSS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHC-----CCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECCCC
Confidence 45555 59999999999999999875 77899884 32210 222222222211111 222221
Q ss_pred -----------cccHHHHHHHhcc---cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEeccc
Q 007957 274 -----------STDIEDIVEKVQP---LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339 (583)
Q Consensus 274 -----------~~~~e~i~~~i~~---~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~ 339 (583)
..+.+++.+.+.+ .++|++|||....++.+... . ....++|+..+.+||++...
T Consensus 82 sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~----~--------~~~adla~~l~~pviLV~~~ 149 (228)
T 3of5_A 82 APHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSD----H--------TTQLDLIKALQIPVLLVSAI 149 (228)
T ss_dssp CHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSS----S--------CBHHHHHHHHTCCEEEEEEC
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCcccccccc----c--------hhHHHHHHHcCCCEEEEEcC
Confidence 1245667666655 47899999998765532110 0 12245666678899998765
Q ss_pred C
Q 007957 340 T 340 (583)
Q Consensus 340 ~ 340 (583)
.
T Consensus 150 ~ 150 (228)
T 3of5_A 150 K 150 (228)
T ss_dssp S
T ss_pred C
Confidence 4
No 318
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.08 E-value=0.069 Score=57.96 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=46.1
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGN 257 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~ 257 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|++....+.+. .+..++|+-..+..+++..
T Consensus 144 epl~T-Gi--raID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-----~dv~~V~~~iGeR~~Ev~~ 207 (502)
T 2qe7_A 144 EPLQT-GI--KAIDSMIP--IGRGQRELIIGDRQTGKTTIAIDTIINQKG-----QDVICIYVAIGQKQSTVAG 207 (502)
T ss_dssp SBCCC-SC--HHHHHSSC--CBTTCBCEEEECSSSCHHHHHHHHHHGGGS-----CSEEEEEEEESCCHHHHHH
T ss_pred Ccccc-ce--eecccccc--cccCCEEEEECCCCCCchHHHHHHHHHhhc-----CCcEEEEEECCCcchHHHH
Confidence 44556 88 88998874 678999999999999999997654444332 2445678776666655544
No 319
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.08 E-value=0.022 Score=58.71 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
-+++|.|++|+|||||+..++..+.... .+..+.+++.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~---~~~~v~~i~~D~ 132 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWP---DHPNVEVITTDG 132 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTST---TCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccC---CCCeEEEEeecc
Confidence 3899999999999999999988876321 134678887664
No 320
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.05 E-value=0.032 Score=54.50 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=54.8
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhcccc-cc-----
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMMIA-TE----- 267 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~i~-~~----- 267 (583)
-++.++.+ .-++|.|++|+|||.++..++... +.+++|+.-- +-..|+..++..+++. ..
T Consensus 101 ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~ 167 (237)
T 2fz4_A 101 ALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGR 167 (237)
T ss_dssp HHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSS
T ss_pred HHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 44555543 238889999999999988776553 2467777644 4456777776665433 11
Q ss_pred -----ccccCCcccHHHHHHHhcc--cCCCEEEEccchhh
Q 007957 268 -----ELFLYSSTDIEDIVEKVQP--LSPRALIIDSIQTV 300 (583)
Q Consensus 268 -----~i~i~~~~~~e~i~~~i~~--~~p~lVVIDsi~~l 300 (583)
++.+ .+.+.+...... .+.++|||||...+
T Consensus 168 ~~~~~~i~v---~T~~~l~~~~~~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 168 IKELKPLTV---STYDSAYVNAEKLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp CBCCCSEEE---EEHHHHHHTHHHHTTTCSEEEEECSSCC
T ss_pred CCCcCCEEE---EeHHHHHhhHHHhcccCCEEEEECCccC
Confidence 1111 123333333322 35899999999875
No 321
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.04 E-value=0.023 Score=61.37 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=43.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~ 285 (583)
.-++|.|+||+|||+++..++..+...... ..+.++++++.. . ...| -.+..+..+++.+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------~--~~~g--------~~e~~~~~~~~~~~ 264 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------T--KYRG--------EFEDRLKKVMDEIR 264 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------c--cccc--------hHHHHHHHHHHHHH
Confidence 356899999999999999999988653110 013345555433 0 0000 01234566777777
Q ss_pred ccCCCEEEEc
Q 007957 286 PLSPRALIID 295 (583)
Q Consensus 286 ~~~p~lVVID 295 (583)
..++.+++||
T Consensus 265 ~~~~~iLfiD 274 (468)
T 3pxg_A 265 QAGNIILFID 274 (468)
T ss_dssp TCCCCEEEEC
T ss_pred hcCCeEEEEe
Confidence 7788999999
No 322
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.01 E-value=0.042 Score=63.24 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=36.8
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHH
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRA 259 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~ 259 (583)
.++-..+ ..|+.++|.|++|+||||++-+++.......+ .+..++++.- .+...++..++
T Consensus 100 ~~i~~~l----~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~--~g~~ilvl~P~r~La~q~~~~l 160 (773)
T 2xau_A 100 DEFLKLY----QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL--ENTQVACTQPRRVAAMSVAQRV 160 (773)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG--GTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHhccccC--CCceEEecCchHHHHHHHHHHH
Confidence 4555555 44689999999999999988877655433211 1334777653 22334454444
No 323
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.97 E-value=0.024 Score=58.65 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=34.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..|.+++|.|+||+|||||+..++..+... +.+|..++.+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-----~~~v~v~~~d~ 94 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-----GLKVAVIAVDP 94 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCeEEEEeecC
Confidence 578899999999999999999999988764 56788877654
No 324
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.96 E-value=0.039 Score=51.85 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=37.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcC-CCCCccEEEEeCc-cCHHH-HHHHHH
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGE-ESVEQ-IGNRAD 260 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~-~~~~~~VLyis~E-es~~q-i~~R~~ 260 (583)
-++.++.| .-++|.+++|+|||..+...+........ ...+.+++|+.-- +-..| +...+.
T Consensus 41 ~i~~~~~~-----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 41 VAQPALEG-----KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp HHHHHHTT-----CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred HHHHHhcC-----CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 45566643 45889999999999998887765543210 0124578888744 33345 444333
No 325
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.96 E-value=0.031 Score=54.67 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+.-++++.|.+|+|||||+..++..++ . +.+|+.++.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~-----g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D-----NYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-T-----TSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-C-----CCeEEEEeCCC
Confidence 456899999999999999999999888 5 67899998764
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.96 E-value=0.015 Score=57.43 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=24.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|.++.|.|++|+||||++..++..+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 678999999999999999999998654
No 327
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.95 E-value=0.095 Score=51.66 Aligned_cols=116 Identities=13% Similarity=0.239 Sum_probs=69.4
Q ss_pred eEEEEEc-CCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe-----Cc------cCHHHHHHHHHhc--ccccccc--cc
Q 007957 208 SLVLIGG-DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS-----GE------ESVEQIGNRADRM--MIATEEL--FL 271 (583)
Q Consensus 208 svilI~G-~pG~GKTTLllqia~~la~~~~~~~~~~VLyis-----~E------es~~qi~~R~~rl--~i~~~~i--~i 271 (583)
..+.|+| .+|+|||++...++..+.+. +.+|.|+- .. .+...+...+.++ +++.+++ +.
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~-----G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~ 96 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNAC-----GVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYR 96 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT-----TCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhC-----CCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEE
Confidence 3455555 59999999999999999875 77899984 11 1122221221222 3332221 22
Q ss_pred CC----------------cccHHHHHHHhcc--cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 007957 272 YS----------------STDIEDIVEKVQP--LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333 (583)
Q Consensus 272 ~~----------------~~~~e~i~~~i~~--~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tV 333 (583)
+. ..+++++.+.+++ .+.|++|||....++.+.. . + ....++|+..+.+|
T Consensus 97 ~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~~~~D~vlIEGagGl~~pl~--~--~--------~~~adlA~~l~~pV 164 (242)
T 3qxc_A 97 YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPIT--L--E--------ENMLDFALKLKAKM 164 (242)
T ss_dssp CSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGGGTCSEEEEECCSCTTCBSS--S--S--------CBHHHHHHHHTCEE
T ss_pred ECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCEEEEECCCCcccccc--c--c--------chHHHHHHHcCCCE
Confidence 21 2246666666553 3689999999876653311 0 0 12345677789999
Q ss_pred EEecccC
Q 007957 334 LLAGHVT 340 (583)
Q Consensus 334 IlisH~~ 340 (583)
|+|....
T Consensus 165 ILV~~~~ 171 (242)
T 3qxc_A 165 LLISHDN 171 (242)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 9997655
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.91 E-value=0.02 Score=54.00 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=26.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
...|.+++|.|.+|+||||++..++..+..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999987654
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.018 Score=54.11 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+|.+++|.|.||+||||++..++..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999988764
No 330
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.85 E-value=0.028 Score=56.79 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..+.++.|+|..|+||||++..+|..++.. +.+|+.++.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-----GKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-----CCeEEEEeCCC
Confidence 356788888999999999999999999985 78999999874
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~ 229 (583)
.+++|.|.||+||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999876
No 332
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.83 E-value=0.099 Score=49.60 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=38.4
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||......+........ .+.+++|+.-- +-..|+..++.++
T Consensus 44 ~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 44 CIPQAILG-----MDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp HHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCCCchhhhhhHHHHHhhhccC--CCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 45666654 34889999999999877666555433211 13478888743 4456666666554
No 333
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.81 E-value=0.12 Score=58.75 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=38.0
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHH-HhhhcCCCCCccEEEEeCc-cCHHHHHHHHHh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAI-IADVHDLGEPSPVVYVSGE-ESVEQIGNRADR 261 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~-la~~~~~~~~~~VLyis~E-es~~qi~~R~~r 261 (583)
++..|..+++.|++|+|||+.+...+.. +... +.+++|+.-- .-..|+..++.+
T Consensus 35 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 35 GILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp TGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECSSGGGHHHHHHHTGG
T ss_pred HhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcCcHHHHHHHHHHHHH
Confidence 3455789999999999999988555443 3322 5689998843 556677777653
No 334
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.80 E-value=0.017 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..+++|.|.||+||||++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998775
No 335
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.77 E-value=0.088 Score=50.91 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=37.0
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-+..++.| .-+++.+++|+|||......+....... ..+.+++|+.-- +-..|+..++..+
T Consensus 60 ai~~i~~~-----~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 60 AIIPCIKG-----YDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HHHHHHTT-----CCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEECcHHHHHHHHHHHHHH
Confidence 45566643 4588999999999976544443332211 124578888743 4456666666554
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.021 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+++|.|.||+||||++..++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988654
No 337
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.75 E-value=0.085 Score=59.74 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhc---ccccccc----c----cCCc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRM---MIATEEL----F----LYSS 274 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl---~i~~~~i----~----i~~~ 274 (583)
|..+++.|++|+|||+.+...+...... +.+++|+.--. -..|...+++++ ++....+ . ....
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~ 114 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD 114 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTT
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccC
Confidence 6789999999999999987766554432 46899987443 445555555332 2211000 0 0001
Q ss_pred -----ccHHHHHHHhcc-----cCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEeccc
Q 007957 275 -----TDIEDIVEKVQP-----LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339 (583)
Q Consensus 275 -----~~~e~i~~~i~~-----~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~ 339 (583)
.+.+.+...+.. .+.++|||||+..+.. .+....+..++..++.. ..+..+|+.+-.
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~------~~r~~~~~~ll~~l~~~--~~~~~ii~lSAT 181 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS------EKRGATLEILVTKMRRM--NKALRVIGLSAT 181 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC------TTTHHHHHHHHHHHHHH--CTTCEEEEEECC
T ss_pred CCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC------CCcccHHHHHHHHHHhc--CcCceEEEECCC
Confidence 123333333322 2568999999986531 22344455555555543 335666665533
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.74 E-value=0.021 Score=54.61 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+++|.|++|+||||++..++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 339
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.73 E-value=0.087 Score=56.44 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=51.0
Q ss_pred CeEEEEEcCCCCCHHH-HHHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHhcccccc--c----------cccC
Q 007957 207 GSLVLIGGDPGVGKST-LLLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADRMMIATE--E----------LFLY 272 (583)
Q Consensus 207 GsvilI~G~pG~GKTT-Lllqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~rl~i~~~--~----------i~i~ 272 (583)
++++++.+++|+|||+ ++..++..+... +.+++|+.- .+-..|+..++..+.+... . +.+.
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~~~~~~i~~~ 93 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLR-----RLRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLM 93 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTSCEEECCTTCSCCCCSSCCEEEE
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhc-----CCcEEEECCCHHHHHHHHHHhcCceeeeeeccccccCCCCceEEEE
Confidence 5788999999999999 577766655543 457888873 3344566655543322111 0 1111
Q ss_pred CcccH-HHHHHHhcccCCCEEEEccchhh
Q 007957 273 SSTDI-EDIVEKVQPLSPRALIIDSIQTV 300 (583)
Q Consensus 273 ~~~~~-e~i~~~i~~~~p~lVVIDsi~~l 300 (583)
....+ ..+.....-.+.++|||||...+
T Consensus 94 t~~~l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 94 CHATFTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp EHHHHHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred ChHHHHHHhhCcccccCCCEEEEeCCccC
Confidence 11111 22222222336799999999843
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.71 E-value=0.022 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
++|..++|.|.||+||||++..++..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999998765
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.69 E-value=0.02 Score=52.94 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..+.+++|.|.||+||||++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998665
No 342
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.69 E-value=0.079 Score=57.15 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=92.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHH---H
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRA---D 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~---~ 260 (583)
+.+.| |+ .-+|-++. +.+|+-++|.|++|+|||+|+.++|.....+.. .++..++|.-..+..+++..-. .
T Consensus 134 e~l~T-Gi--r~ID~l~p--igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~-~~~~~~V~~~iGER~~Ev~e~~~~~~ 207 (469)
T 2c61_A 134 DFIQT-GI--STIDGTNT--LVRGQKLPIFSASGLPHNEIALQIARQASVPGS-ESAFAVVFAAMGITNEEAQYFMSDFE 207 (469)
T ss_dssp SBCBC-SC--HHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC-SSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred cccce-ee--Eeeeeeec--cccCCEEEEECCCCCCHHHHHHHHHHHHhhccC-CCCcEEEEEEccCCcHHHHHHHHHHH
Confidence 34556 88 88998874 678999999999999999999999887654311 0123577777666655544433 2
Q ss_pred hccccccccccCCccc---HHH---------HHHHhc-ccC-CCEEEEccchhhhh---------hcccCCCCCHHHHHH
Q 007957 261 RMMIATEELFLYSSTD---IED---------IVEKVQ-PLS-PRALIIDSIQTVYL---------RGVAGSAGGLMQVKE 317 (583)
Q Consensus 261 rl~i~~~~i~i~~~~~---~e~---------i~~~i~-~~~-p~lVVIDsi~~l~~---------~~~~~~~g~~~qvre 317 (583)
.-+.-...+.+....+ ..+ +-+... ..+ -=++++|+++.... ....+..|-+..+-.
T Consensus 208 ~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~ 287 (469)
T 2c61_A 208 KTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYT 287 (469)
T ss_dssp HHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHH
T ss_pred hccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhh
Confidence 2222222222221111 111 222222 222 34789999876522 222232333334444
Q ss_pred HHHHHHHHHHc----CC-CcEEEecccCCccCcCCc--cchheeccEEEEEeCc
Q 007957 318 CTSALLRFAKK----TN-IPVLLAGHVTKSGDIAGP--RVLEHIVDAVLYMEGE 364 (583)
Q Consensus 318 i~~~L~~lAk~----~g-~tVIlisH~~k~g~~ag~--~~Le~~aD~Vl~Le~~ 364 (583)
.+..|.+-|.+ .| +|.|-+-- ...+|+..| .....+.|.-++|+++
T Consensus 288 ~l~~l~ERAg~~~~~~GSIT~i~~v~-~~~dD~~dPI~~~~~~i~dg~ivLsr~ 340 (469)
T 2c61_A 288 DLATLYERAGIVKGAKGSVTQIPILS-MPGDDITHPIPDLSGYITEGQIVVARE 340 (469)
T ss_dssp HHHHHHTSCEEBTTSSCEEEEEEEEE-CCSCTTTSCCCCCGGGGTTEEEEBCHH
T ss_pred hhhhHHhhccccCCCCCceeeeeeee-cCCCCcCcchHHHHhhccCcEEEEcHH
Confidence 44445443321 12 44444322 223444443 4556667777777653
No 343
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.66 E-value=0.052 Score=55.99 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=46.8
Q ss_pred ccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 286 ~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
..+|+++++|||++.+ |......+...|.++.++ +.+||+++|.. + +...||.++.|+.
T Consensus 270 ~~~p~~lllDEp~~~L---------D~~~~~~l~~~l~~~~~~-~~~vi~~sH~~-~--------~~~~~d~~~~l~~ 328 (339)
T 3qkt_A 270 AGEISLLILDEPTPYL---------DEERRRKLITIMERYLKK-IPQVILVSHDE-E--------LKDAADHVIRISL 328 (339)
T ss_dssp TTTTCEEEEECCCTTC---------CHHHHHHHHHHHHHTGGG-SSEEEEEESCG-G--------GGGGCSEEEEEEE
T ss_pred cCCCCEEEEECCCCCC---------CHHHHHHHHHHHHHHHhc-CCEEEEEEChH-H--------HHHhCCEEEEEEe
Confidence 4579999999998865 566667777777777655 77999999983 3 6778999999974
No 344
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.64 E-value=0.022 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+..++|.|++|+||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.63 E-value=0.021 Score=53.18 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.++.+++|.|.||+||||++..++..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 346
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.62 E-value=0.043 Score=58.41 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.3
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
....+++|.|.||+||||++..++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999988643
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.61 E-value=0.013 Score=56.79 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
..+|.++.|.|++|+|||||+..++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 378999999999999999999988765
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.57 E-value=0.022 Score=56.28 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~l 231 (583)
.+++|.|+||+|||||+..++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998765
No 349
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.56 E-value=0.066 Score=53.60 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=31.6
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 209 LVLI-GGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 209 vilI-~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
++.| .+..|+||||++..+|..++.. +.+|++++.+.
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~-----G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYG-----GAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHT-----TCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHC-----CCcEEEEECCC
Confidence 4545 5788999999999999999974 78999999886
No 350
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.54 E-value=0.02 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~ 234 (583)
.++|.|+||+|||||+..+++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999988764
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.53 E-value=0.038 Score=52.14 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=25.7
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
.+|.+++|.|.+|+||||++..++..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35779999999999999999999988764
No 352
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.50 E-value=0.019 Score=51.79 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQM 227 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqi 227 (583)
+++|.|+||+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 353
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=94.48 E-value=0.012 Score=61.17 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=44.2
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCC--CcEEEecccCCccCcCCccchheeccEEEEEeC
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN--IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEG 363 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g--~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le~ 363 (583)
.-.|+|=++..-... .........+..++..|+.+.+++. ++++++-...--.. .--..++++||.|+.|+.
T Consensus 218 ilRIvI~SLgSP~wy--~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~-~l~~rle~l~D~vi~L~p 291 (361)
T 4a8j_A 218 LIRIVIPSLLHPAMY--PPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITP-PLLVLLRNMFDSVINLEP 291 (361)
T ss_dssp EEEEEETTTTCTTTS--CGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCH-HHHHHHHHHCSEEEEEEE
T ss_pred eEEEEecCCCCcccC--CCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcCh-HHHHHHHHhCcEEEEeee
Confidence 346777766543210 0111257788899999999999874 35555433221111 112579999999999985
No 354
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.41 E-value=0.021 Score=58.72 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la 232 (583)
+.++|.|+||+|||||+..++..+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5799999999999999999998864
No 355
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.39 E-value=0.12 Score=55.13 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHhccccc--cc----------ccc
Q 007957 206 PGSLVLIGGDPGVGKSTLL-LQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADRMMIAT--EE----------LFL 271 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLl-lqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~rl~i~~--~~----------i~i 271 (583)
+|+.+++.|++|+|||..+ ..++..+... +.+++|+.- .+-..|+...+..+.+.. .. +.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 75 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----RLRTVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGNEIVDF 75 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTSCEEEC---------CCCSEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCCceEEE
Confidence 4788999999999999975 4454344442 457888773 344556665554222210 00 000
Q ss_pred CCcccH-HHHHHHhcccCCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecc
Q 007957 272 YSSTDI-EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338 (583)
Q Consensus 272 ~~~~~~-e~i~~~i~~~~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH 338 (583)
+....+ ..++....-.+.++|||||...+ .. ........|..+....+..+++.+-
T Consensus 76 ~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~----------~~~~~~~~l~~~~~~~~~~~l~~SA 132 (431)
T 2v6i_A 76 MCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DP----------ASVAARGYIETRVSMGDAGAIFMTA 132 (431)
T ss_dssp EEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SH----------HHHHHHHHHHHHHHTTSCEEEEEES
T ss_pred EchHHHHHHHhcCccccCCCEEEEeCCccC-Cc----------cHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 111111 12222222346799999999864 11 1122334455555445666666553
No 356
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.31 E-value=0.04 Score=60.18 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
..|.-++|.|+||+|||+|+..++..+.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 4456799999999999999999987653
No 357
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.31 E-value=0.064 Score=56.37 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~ 248 (583)
.++++.|..|+||||++..+|..++.. |.+|++++.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~-----g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ-----GKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT-----TCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCCeEEEeC
Confidence 467899999999999999999999875 789999998
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.27 E-value=0.021 Score=53.21 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..+.+++|.|.||+||||++..++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998765
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.27 E-value=0.048 Score=50.40 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS 247 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis 247 (583)
+++|.|.+|+||||++..++..+... +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-----g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-----GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEe
Confidence 68999999999999999999887542 34555543
No 360
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.27 E-value=0.031 Score=56.65 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
.-.++.+++|.|++|+|||||+..++..+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3457889999999999999999999998875
No 361
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.25 E-value=0.028 Score=61.04 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.6
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhc
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~~~ 235 (583)
+.+ ++++|.|+||+|||||+..+++.+....
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 467 8999999999999999999999887653
No 362
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.24 E-value=0.2 Score=54.53 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=46.5
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR 258 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R 258 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|++....+.+. .+..++|+-..+..+++..-
T Consensus 157 epl~T-Gi--raID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~~~~-----~dv~~V~~~IGeR~~Ev~e~ 221 (515)
T 2r9v_A 157 TPLQT-GI--KAIDSMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQKG-----QGVYCIYVAIGQKKSAIARI 221 (515)
T ss_dssp SEECC-SC--HHHHHHSC--EETTCBEEEEEETTSSHHHHHHHHHHTTTT-----TTEEEEEEEESCCHHHHHHH
T ss_pred cchhc-Cc--cccccccc--cccCCEEEEEcCCCCCccHHHHHHHHHhhc-----CCcEEEEEEcCCCcHHHHHH
Confidence 44556 88 89999884 678999999999999999997644443332 13456787766666655443
No 363
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.21 E-value=0.12 Score=52.87 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=59.2
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhccccc----c-
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMMIAT----E- 267 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~i~~----~- 267 (583)
.-++.++.| .+.-+++.+++|+|||..+...+........ .+.+++|+.-. +-..|+..++..++-.. .
T Consensus 34 ~~i~~~~~~---~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 108 (395)
T 3pey_A 34 RALPLLLHN---PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQL 108 (395)
T ss_dssp HHHHHHHCS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred HHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHHhccCC--CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEE
Confidence 356666655 3467899999999999876665554432211 24578888743 34556666666543110 0
Q ss_pred --------------ccccCCcccHHHHHHHhcc-----cCCCEEEEccchhhh
Q 007957 268 --------------ELFLYSSTDIEDIVEKVQP-----LSPRALIIDSIQTVY 301 (583)
Q Consensus 268 --------------~i~i~~~~~~e~i~~~i~~-----~~p~lVVIDsi~~l~ 301 (583)
++.+ .+.+.+...+.. .+.++|||||...+.
T Consensus 109 ~~~~~~~~~~~~~~~iiv---~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 109 IVPDSFEKNKQINAQVIV---GTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp ESTTSSCTTSCBCCSEEE---ECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred EecCchhhhccCCCCEEE---EcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 0111 223444444432 257899999998765
No 364
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.20 E-value=0.035 Score=54.10 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+.+|.+++|.|++|+||||++..++..+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999999988764
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.20 E-value=0.046 Score=50.79 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEE
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYV 246 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyi 246 (583)
+++|.|.+|+||||++..++..+... +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-----g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-----GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-----CC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEe
Confidence 68999999999999999999887542 4456544
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.18 E-value=0.018 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
++.+++|.|.||+||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999997654
No 367
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.16 E-value=0.031 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la 232 (583)
+++|.|.+|+||||++..++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988764
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.15 E-value=0.022 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la 232 (583)
|..+.|.|++|+||||++..++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999988653
No 369
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.13 E-value=0.047 Score=53.75 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
++.|.|..|+||||++..+|..++.. +.+|++++.+.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~-----G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAM-----GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-----TCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHC-----CCcEEEEcCCC
Confidence 56678999999999999999999974 77999999774
No 370
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.13 E-value=0.03 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|+||+||||++..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 371
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.13 E-value=0.038 Score=53.65 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+..+++|.|+||+||+|.+..++..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566899999999999999999998765
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.12 E-value=0.034 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+|-.++|.|.||+||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 373
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.07 E-value=0.24 Score=51.76 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=58.7
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc-cccccccccC
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM-MIATEELFLY 272 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl-~i~~~~i~i~ 272 (583)
-++.++.| -++|.+++|+|||..+..++...... .+.+++++.-- .-..|+...+.++ +.....+..+
T Consensus 17 ~i~~~~~~------~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 17 IYAKCKET------NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HHHHGGGS------CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred HHHHHhhC------CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 45555644 46789999999999998887766542 25689998864 4455666666544 3322122111
Q ss_pred C-c-----------------ccHHHHHHHhc-----ccCCCEEEEccchhhh
Q 007957 273 S-S-----------------TDIEDIVEKVQ-----PLSPRALIIDSIQTVY 301 (583)
Q Consensus 273 ~-~-----------------~~~e~i~~~i~-----~~~p~lVVIDsi~~l~ 301 (583)
. . .+.+.+...+. ..+.++|||||...+.
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV 138 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC
Confidence 1 1 11233333322 3367899999998764
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.07 E-value=0.027 Score=54.21 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=22.4
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..++.+++|.|.||+||||++..++..+
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999998654
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.07 E-value=0.037 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+-+++|.|.||+||||++..++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998765
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.07 E-value=0.028 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+|.+++|.|.+|+||||++..++..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998765
No 377
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.03 E-value=0.21 Score=50.53 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=40.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| +.-+++.+++|+|||..+...+....... .+.+++++.-. +-..|+..++..+
T Consensus 36 ~i~~~~~~----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 36 VIPLFLND----EYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp HHHHHHHT----CSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 45666644 25788999999999998777666554321 24578888754 3345666666543
No 378
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.03 E-value=0.058 Score=60.61 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhcc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRMM 263 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl~ 263 (583)
...+.+|.||||+|||+.+..+...+... +.+||..+.-. ..+++..|+...+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 34699999999999999999888887764 67899888643 4567777765443
No 379
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.01 E-value=0.21 Score=48.26 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=35.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHH-HHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM-AAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqi-a~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||...... ...+.... ..+.+++|+.-. +-..|+..++..+
T Consensus 59 ~i~~~~~~-----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 59 AIPVMLHG-----RELLASAPTGSGKTLAFSIPILMQLKQPA--NKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp HHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHCSCC--SSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHHhhcc--cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 45555543 44799999999999764333 33332211 124468888643 3455666666554
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.99 E-value=0.036 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la 232 (583)
+.++|.|.+|+||||++..++..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987653
No 381
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.95 E-value=0.12 Score=55.59 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=36.2
Q ss_pred cCCeEEEEEcCCCCCHHHH-HHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTL-LLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADR 261 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTL-llqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~r 261 (583)
..|+.+++.+++|+|||+. ++.++..+... +.+++|+.- .+-..|+..++..
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----RLRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEECSHHHHHHHHHHTTT
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCcEEEECchHHHHHHHHHHhcC
Confidence 5578999999999999996 56665555432 457888873 3345566666553
No 382
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.94 E-value=0.19 Score=54.73 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHH-HHHHHHhhhc--CCCCCccEEEEeCccCHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL-QMAAIIADVH--DLGEPSPVVYVSGEESVEQIGN 257 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLll-qia~~la~~~--~~~~~~~VLyis~Ees~~qi~~ 257 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|++ +|+....... ++..+..++|+-..+..+++..
T Consensus 144 epl~T-Gi--raID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~ 215 (510)
T 2ck3_A 144 EPMQT-GI--KAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQ 215 (510)
T ss_dssp SBCCC-SC--HHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHH
T ss_pred ccccc-cc--eeeccccc--cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHH
Confidence 44556 88 89999885 6789999999999999999966 4444443200 0001345778876666655544
No 383
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.92 E-value=0.017 Score=54.37 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.1
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+.+|..++|.|++|+|||||+..+++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999999999999999887543
No 384
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.90 E-value=0.064 Score=54.95 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.+++..|..|+||||++..+|..++.. +.+|+.++.+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-----G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-----GKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-----CCcEEEEeCCC
Confidence 688999999999999999999999985 78999999875
No 385
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.90 E-value=0.036 Score=53.41 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=32.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 210 VLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 210 ilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.|.|..|+||||++..+|..++.. +.+|+.++.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD-----YDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT-----CSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCC
Confidence 4558999999999999999999975 789999998753
No 386
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.90 E-value=0.032 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~ 229 (583)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.89 E-value=0.031 Score=51.71 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~l 231 (583)
.+++|.|.||+||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998765
No 388
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.84 E-value=0.033 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~ 229 (583)
+++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 389
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.82 E-value=0.39 Score=47.46 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEe----C---ccCHHHHHHHHHhcccc-ccccccCC-------
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS----G---EESVEQIGNRADRMMIA-TEELFLYS------- 273 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis----~---Ees~~qi~~R~~rl~i~-~~~i~i~~------- 273 (583)
+++-+-.+|+|||++...++..+.+. +.+|.|+- + +..--+...+. .++. ..+.+.+.
T Consensus 29 i~Itgt~t~vGKT~vt~gL~~~l~~~-----G~~V~~fKPv~~g~~~~~~D~~~~~~~--~g~~~~~~~~~~~~p~sP~~ 101 (251)
T 3fgn_A 29 LVVTGTGTGVGKTVVCAALASAARQA-----GIDVAVCKPVQTGTARGDDDLAEVGRL--AGVTQLAGLARYPQPMAPAA 101 (251)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-----TCCEEEEEEEECCGGGTCCHHHHHHHH--HCCCEEEEEEECSSSSCHHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-----CCeEEEEeeeecCCCCCCHHHHHHHHH--cCCCCCCCCeeECCCCChHH
Confidence 44444467999999999999999875 77899985 2 11111222222 2322 11222221
Q ss_pred --------cccHHHHHHHhccc--CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccC
Q 007957 274 --------STDIEDIVEKVQPL--SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340 (583)
Q Consensus 274 --------~~~~e~i~~~i~~~--~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~ 340 (583)
..+++++.+.+.+. +.|++|||....++.+.. ..+ ....++|+..+.+||+|....
T Consensus 102 aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~--~~~---------~~~adla~~l~~pVILV~~~~ 167 (251)
T 3fgn_A 102 AAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELA--EPG---------VTLRDVAVDVAAAALVVVTAD 167 (251)
T ss_dssp HHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEE--TTT---------EEHHHHHHHTTCEEEEEECSS
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcC--ccc---------chHHHHHHHcCCCEEEEEcCC
Confidence 23466777766543 689999999876653211 000 123457788899999997665
No 390
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.82 E-value=0.041 Score=58.92 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=53.3
Q ss_pred ccCCeEEEEEcCCCCCHHHHH-HHHHHHHhhhcCCCCCccEEEEe-CccCHHHHHHHHHhccccc--cccc-cCCcc---
Q 007957 204 LVPGSLVLIGGDPGVGKSTLL-LQMAAIIADVHDLGEPSPVVYVS-GEESVEQIGNRADRMMIAT--EELF-LYSST--- 275 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLl-lqia~~la~~~~~~~~~~VLyis-~Ees~~qi~~R~~rl~i~~--~~i~-i~~~~--- 275 (583)
+..|.-+++.|++|+|||... ..+...+... +..++|+. ..+-..|+...+..+++.. ..+. +....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~~~~~~v~Tp~~l~ 79 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----RLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVI 79 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTSCEEEESSCCCCCCCSSCCE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEcchHHHHHHHHHHHhcCCeEEecccceeccCCccce
Confidence 456889999999999999975 4444444432 44677776 4445667777666554332 1111 11111
Q ss_pred ---cHHHHHHHhc----ccCCCEEEEccchhh
Q 007957 276 ---DIEDIVEKVQ----PLSPRALIIDSIQTV 300 (583)
Q Consensus 276 ---~~e~i~~~i~----~~~p~lVVIDsi~~l 300 (583)
.-..+...+. -.+.++|||||...+
T Consensus 80 ~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 80 DAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp EEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred eeecccchhHhhhCcccccCccEEEEECcccc
Confidence 1111221111 246799999999865
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.81 E-value=0.041 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|-.++|.|.||+||||++..++..+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 392
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=93.80 E-value=0.02 Score=41.56 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=19.7
Q ss_pred ceeECCCCCCCCc-------cc-----eecCCcccccc
Q 007957 114 TNWVCSDCGYTDG-------QW-----WGMCRACESVG 139 (583)
Q Consensus 114 ~~~~C~~CG~~~~-------~w-----~g~Cp~C~~w~ 139 (583)
..|+|..|||..- .| -|+||.|+.-.
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k 40 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSK 40 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBG
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcH
Confidence 3699999999764 12 37999999643
No 393
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.79 E-value=0.27 Score=46.57 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=36.4
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHH-HHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLL-QMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLll-qia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||.... -++..+.... .+.+++|+.-- +-..|+..++..+
T Consensus 44 ~i~~~~~~-----~~~lv~~pTGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 44 AIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHCCTTC---CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-----CCEEEECCCCCcHHHHHHHHHHHHHhccC---CCceEEEEECCHHHHHHHHHHHHHH
Confidence 45666644 458999999999997643 3333333221 24578888743 4445666666544
No 394
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.79 E-value=0.37 Score=53.11 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=49.4
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|+.+++.... ..-++|+-.-+..+++..-.+.
T Consensus 214 epl~T-Gi--rvID~l~P--igrGqr~~Ifgg~g~GKT~L~~~ia~~~~-------~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 214 VPMIT-GQ--RVIDTFFP--VTKGGAAAVPGPFGAGKTVVQHQIAKWSD-------VDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp SBCCC-CC--HHHHHHSC--CBTTCEEEEECCTTSCHHHHHHHHHHHSS-------CSEEEEEEEEECHHHHHHHHHH
T ss_pred ceecc-cc--hhhhccCC--ccCCCEEeeecCCCccHHHHHHHHHhccC-------CCEEEEEEecccHHHHHHHHHH
Confidence 34555 88 89999884 67899999999999999999999876532 2357777766666666554444
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.73 E-value=0.023 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~ 233 (583)
+++|.|.+|+||||++..++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988764
No 396
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.72 E-value=0.2 Score=48.09 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQ-MAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMM 263 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllq-ia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~ 263 (583)
|.-+++.+++|+|||..... ++..+.... .+.+++|+.-- +-..|+..++..++
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLEN---LSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 34588999999999976433 333332221 24578888743 45567777766653
No 397
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.72 E-value=0.038 Score=57.77 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
.+|++++|.|+||+|||||+..+++...
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999999987655
No 398
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.72 E-value=0.067 Score=54.79 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.-.++.|+|.-|+||||.+..++..++.. |.+|+.++.+-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~-----GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL-----GKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHC-----CCeEEEEecCC
Confidence 34799999999999999999999999985 78999999873
No 399
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.71 E-value=0.06 Score=53.79 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.++.|.|..|+||||++..+|..++.. +.+|+.++.+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~-----G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-----GKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC-----CCeEEEEecCC
Confidence 356778999999999999999999974 77999999874
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.70 E-value=0.045 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
..+++|.|.||+||||++..++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 401
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.67 E-value=0.15 Score=55.31 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=46.6
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR 258 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R 258 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|++....+... .+..++|+-.-+..+++..-
T Consensus 144 epl~T-Gi--kaID~l~P--igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~-----~dv~~V~~~IGeR~~ev~e~ 208 (513)
T 3oaa_A 144 QPVQT-GY--KAVDSMIP--IGRGQRELIIGDRQTGKTALAIDAIINQRD-----SGIKCIYVAIGQKASTISNV 208 (513)
T ss_dssp CBCCC-SC--HHHHHHSC--CBTTCBCEEEESSSSSHHHHHHHHHHTTSS-----SSCEEEEEEESCCHHHHHHH
T ss_pred ccccc-ce--eeeccccc--cccCCEEEeecCCCCCcchHHHHHHHhhcc-----CCceEEEEEecCChHHHHHH
Confidence 45556 88 89999885 678999999999999999997655433222 24457788766666554443
No 402
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.66 E-value=0.2 Score=51.69 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=58.6
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhccccccccc--
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMMIATEELF-- 270 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~i~~~~i~-- 270 (583)
.-+..++.| .+.-+++.+++|+|||......+........ .+.+++|+.-. +-..|+..++.++.-....+.
T Consensus 54 ~~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 128 (412)
T 3fht_A 54 NALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 128 (412)
T ss_dssp HHHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred HHHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHhhhcC--CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEE
Confidence 356666654 3567899999999999876544433322111 23468888643 345566666655432111000
Q ss_pred -cC------C---------cccHHHHHHHhcc------cCCCEEEEccchhhh
Q 007957 271 -LY------S---------STDIEDIVEKVQP------LSPRALIIDSIQTVY 301 (583)
Q Consensus 271 -i~------~---------~~~~e~i~~~i~~------~~p~lVVIDsi~~l~ 301 (583)
.. . -.+.+.+...+.. .+.++|||||...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 129 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp EECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred EeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence 00 0 0234555555533 247899999998765
No 403
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.65 E-value=0.37 Score=46.13 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=36.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH-Hhhhc-CCCCCccEEEEeCc-cCHHHHHHHHHhcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI-IADVH-DLGEPSPVVYVSGE-ESVEQIGNRADRMM 263 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~-la~~~-~~~~~~~VLyis~E-es~~qi~~R~~rl~ 263 (583)
-+..++. |.-+++.+++|+|||......+.. +.... ....+.+++|+.-- +-..|+..++..++
T Consensus 55 ~i~~~~~-----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 55 TIGLALQ-----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp HHHHHHT-----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3455554 355889999999999865543333 22100 00124568888743 44566666665543
No 404
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.037 Score=51.56 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+++.|.|++|+|||||+..++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999999998763
No 405
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.62 E-value=0.27 Score=50.48 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=37.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||..+...+........ .+.+++|+.-- +-..|+..++..+
T Consensus 38 ~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 38 CIPQAILG-----MDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp HHHHHTTT-----CCEEEECSSCSSHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-----CcEEEECCCCCcHHHHHHHHHHHhhcccC--CCeeEEEECCCHHHHHHHHHHHHHH
Confidence 45555543 45889999999999876655554432111 24478888744 4455666666554
No 406
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.59 E-value=0.039 Score=50.21 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
+++|.|.+|+||||++..++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 407
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.52 E-value=0.085 Score=55.27 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNR 258 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R 258 (583)
.+.-++|.|++|+|||||+..++..+... +.++++++.+.....+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-----GSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEESSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-----CCEEEEEeCCcCHHHHHHH
Confidence 44568899999999999999999887653 5689999877665554443
No 408
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.50 E-value=0.048 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|+||+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997664
No 409
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.39 E-value=0.28 Score=47.87 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=36.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||......+........ .+.+++|+.-- +-..|+..++.++
T Consensus 73 ~i~~i~~~-----~~~lv~a~TGsGKT~~~~~~il~~l~~~~--~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 73 AIPLALQG-----RDIIGLAETGSGKTGAFALPILNALLETP--QRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHHSC--CSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEEcCCCCCchhHhHHHHHHHHhcCC--CCceEEEEeCCHHHHHHHHHHHHHH
Confidence 45555543 56889999999999865544443322211 23468888743 3445666655444
No 410
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.38 E-value=0.093 Score=54.95 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=38.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-+..++. |.-+++.+++|+|||...+..+...... +..++|+.-. +-..|+..++..+
T Consensus 29 ~i~~i~~-----~~~~lv~apTGsGKT~~~l~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 29 WAKRIVQ-----GKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHTT-----TCCEECCSCSSSSHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCEEEEeCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHHHH
Confidence 4555554 3467899999999999555554444432 5678888744 4456777777664
No 411
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.38 E-value=0.042 Score=55.87 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=27.4
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
++|-..+ .|.+++|.|+||+|||||+..++ ....
T Consensus 157 ~~L~~~l-----~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 157 DELVDYL-----EGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHHHHT-----TTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred HHHHhhc-----cCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 5555544 57899999999999999999998 5443
No 412
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.36 E-value=0.11 Score=55.87 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
.-++++.|.||+||||++..++..+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999999987764
No 413
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.35 E-value=0.081 Score=51.52 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=32.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhh-hcCCCCCccEEEEeCc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIAD-VHDLGEPSPVVYVSGE 249 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~-~~~~~~~~~VLyis~E 249 (583)
.+|.++.|.|.+|+||||++..++..+.. . +..|++++-|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-----g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-----GVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-----CGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-----CceeeEeeeC
Confidence 46889999999999999999999998876 4 4567764444
No 414
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.35 E-value=0.53 Score=44.76 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH-Hhhhc---CCCCCccEEEEeC-ccCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI-IADVH---DLGEPSPVVYVSG-EESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~-la~~~---~~~~~~~VLyis~-Ees~~qi~~R~~rl 262 (583)
-+..++.| .-+++.+++|+|||...+..+.. +.... ....+.+++|+.- .+-..|+..++..+
T Consensus 50 ~i~~~~~~-----~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 50 AWPIILQG-----IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp HHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 45555543 45789999999999754443322 22110 0012456888873 34456777777665
No 415
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.35 E-value=0.096 Score=52.30 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=34.6
Q ss_pred CCeEEEEEc-CCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 206 PGSLVLIGG-DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 206 ~GsvilI~G-~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
...+++|++ .+|+||||++..+|..++.. +.+|++++.+..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~-----G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQA-----GYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhC-----CCeEEEEeCCCC
Confidence 456788876 58999999999999999974 789999998854
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.34 E-value=0.046 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+.+++|.|+||+||||++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998765
No 417
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.30 E-value=0.56 Score=43.61 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||......+........ .+.+++|+.-- +-..|+..++..+
T Consensus 33 ~i~~~~~~-----~~~lv~apTGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 33 SIPIALSG-----RDILARAKNGTGKSGAYLIPLLERLDLKK--DNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp HHHHHHTT-----CCEEEECCSSSTTHHHHHHHHHHHCCTTS--CSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHccC-----CCEEEECCCCCchHHHHHHHHHHHhcccC--CCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 45555543 45889999999999655443333221111 23468888743 3345666665444
No 418
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.26 E-value=0.21 Score=54.17 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=58.4
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhcccccc-----
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRMMIATE----- 267 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl~i~~~----- 267 (583)
.-++.++.| .+.-++|.+++|+|||..+...+........ .+.+++|+.-.. -..|+..++..+.-...
T Consensus 148 ~ai~~i~~~---~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~ 222 (508)
T 3fho_A 148 KALPLLLSN---PPRNMIGQSQSGTGKTAAFALTMLSRVDASV--PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF 222 (508)
T ss_dssp SSHHHHHCS---SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC
T ss_pred HHHHHHHcC---CCCCEEEECCCCccHHHHHHHHHHHHHHhCC--CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEE
Confidence 456677765 3467899999999999875554444332211 234788887543 45566666655431110
Q ss_pred --------------ccccCCcccHHHHHHHhc-----ccCCCEEEEccchhhh
Q 007957 268 --------------ELFLYSSTDIEDIVEKVQ-----PLSPRALIIDSIQTVY 301 (583)
Q Consensus 268 --------------~i~i~~~~~~e~i~~~i~-----~~~p~lVVIDsi~~l~ 301 (583)
++.+ .+.+.+...+. ..+.++|||||...+.
T Consensus 223 ~~~~~~~~~~~~~~~Ivv---~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 223 GIKDSVPKGAKIDAQIVI---GTPGTVMDLMKRRQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp ----------CCCCSEEE---ECHHHHHHHHHTTCSCCTTCCEEEECCHHHHT
T ss_pred EeCCcccccccCCCCEEE---ECHHHHHHHHHcCCccccCCCEEEEechhhhc
Confidence 1111 12344444332 2357899999998764
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.24 E-value=0.058 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|.+|+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 420
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.24 E-value=0.045 Score=52.55 Aligned_cols=25 Identities=48% Similarity=0.593 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
.|..++|.|++|+|||||++.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998643
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.22 E-value=0.053 Score=53.09 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.++-+++|.|+||+||||++..++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 422
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.22 E-value=0.057 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~ 230 (583)
..+++|.|.+|+||||++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998765
No 423
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.22 E-value=0.11 Score=59.60 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=43.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCC--CCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHh
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDL--GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~--~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i 284 (583)
..-++|.|+||+|||+++..++..+...... ..+..++.++. .. ...| -.+..+..+++.+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g~--~~~G--------~~e~~l~~~~~~~ 263 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------GT--KYRG--------EFEDRLKKVMDEI 263 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------cc--cccc--------hHHHHHHHHHHHH
Confidence 3358999999999999999999988543110 01233444433 00 0000 0133466777777
Q ss_pred cccCCCEEEEc
Q 007957 285 QPLSPRALIID 295 (583)
Q Consensus 285 ~~~~p~lVVID 295 (583)
...++.+|+||
T Consensus 264 ~~~~~~iLfiD 274 (758)
T 3pxi_A 264 RQAGNIILFID 274 (758)
T ss_dssp HTCCCCEEEEC
T ss_pred HhcCCEEEEEc
Confidence 77788999999
No 424
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.21 E-value=0.045 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la 232 (583)
.++|.|++|+|||||+..++....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987643
No 425
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.20 E-value=0.086 Score=51.75 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=26.4
Q ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 203 Gi~~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
...+|.++.|.|.+|+||||++..++..+...
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 33467899999999999999999999988763
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.19 E-value=0.063 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+|.+++|.|.+|+||||++..++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999988754
No 427
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.16 E-value=0.049 Score=50.89 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|++|+|||||+..+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 428
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.15 E-value=0.098 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.495 Sum_probs=34.5
Q ss_pred CCeEEEEEcC-CCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 206 PGSLVLIGGD-PGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 206 ~GsvilI~G~-pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
.+.+++|++. +|+||||++..+|..++.. +.+|++|+.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~-----G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQS-----DQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHT-----TCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhC-----CCcEEEEECCCC
Confidence 4567777775 8999999999999999974 789999998863
No 429
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.14 E-value=0.19 Score=52.08 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=38.3
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-+..++.| .-+++.+++|+|||+.....+........ .+.+++|+.-. +-..|+..++..+
T Consensus 70 ~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 70 AILPCIKG-----YDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HHHHHHTT-----CCEEECCCSCSSSHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HhHHHhCC-----CCEEEECCCCCcccHHHHHHHHHHHhhcC--CceeEEEEeChHHHHHHHHHHHHHH
Confidence 45566643 34899999999999876655554433211 24578888754 3455666666554
No 430
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=93.14 E-value=0.031 Score=47.63 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.0
Q ss_pred ceeECCCCCCCCcc---ceecCCccccccc
Q 007957 114 TNWVCSDCGYTDGQ---WWGMCRACESVGT 140 (583)
Q Consensus 114 ~~~~C~~CG~~~~~---w~g~Cp~C~~w~t 140 (583)
.-|+|.+|||.+.+ --.+||.|++-+.
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCcc
Confidence 46899999999932 3388999997553
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.12 E-value=0.11 Score=50.16 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=30.1
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEE
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYV 246 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyi 246 (583)
.+|-++.|.|.+|+||||++..++..+... +..|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-----~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER-----GIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT-----TCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCcccc
Confidence 368899999999999999999999888753 5566544
No 432
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.07 E-value=0.049 Score=55.09 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
+-+++|.|++|+||||++..++..+... +..+.+++.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~-----~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE-----GVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-----TCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc-----CCCeeEeecch
Confidence 4589999999999999999998866532 34577888665
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.06 E-value=0.053 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|+||+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987653
No 434
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.06 E-value=0.08 Score=58.76 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=43.8
Q ss_pred hhhhHHhcC-CccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 194 NEVARVLGG-GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 194 ~eLD~vLgG-Gi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.||+++++ +-....++++.|.+|+||||++..+|..++.. +.+|++++.+..
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~-----g~~vllvD~Dp~ 366 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM-----GFDVHLTTSDPA 366 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEESCCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHC-----CCcEEEEeCCCc
Confidence 678888765 33456688889999999999999999999875 779999998754
No 435
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.03 E-value=0.27 Score=54.99 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=35.7
Q ss_pred cCCeEEEEEcCCCCCHHHH-HHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTL-LLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRAD 260 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTL-llqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~ 260 (583)
..|..+++.+++|+|||+. ++.++..+... +.+++|+.- .+-..|+..++.
T Consensus 184 ~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 184 RKKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHHHHHHHHhc
Confidence 3578999999999999996 56676666543 457888873 334456655554
No 436
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.02 E-value=0.096 Score=58.08 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..++++.|.+|+||||++..+|..++.. |.+|++++.+.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~-----G~rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ-----GKRVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC-----CCcEEEEECCC
Confidence 5689999999999999999999999975 78999999874
No 437
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.02 E-value=0.15 Score=55.37 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=47.5
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHH
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRAD 260 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~ 260 (583)
+.+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|++....+.+. .+..++|+-..+..+++..-.+
T Consensus 145 epl~T-Gi--raID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-----~dv~~V~~~iGeR~~Ev~~~~~ 211 (507)
T 1fx0_A 145 EPLQT-GL--IAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQG-----QNVICVYVAIGQKASSVAQVVT 211 (507)
T ss_dssp SBCCC-SC--TTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCCT-----TTCEEEEEEESCCHHHHHHHHH
T ss_pred Ccccc-cc--eecccccc--cccCCEEEEecCCCCCccHHHHHHHHHhhc-----CCcEEEEEEcCCCchHHHHHHH
Confidence 34556 88 78888874 678999999999999999997644444332 2445788877776666655443
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.98 E-value=0.059 Score=49.32 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
+|.-++|.|+||+|||||+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998754
No 439
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.97 E-value=0.088 Score=52.70 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=30.1
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
-|...+.|..++-..++|.||||+|||+|+..+|..+
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4666676765766789999999999999999988754
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.96 E-value=0.076 Score=48.05 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~l 231 (583)
.+.+|.|+||+||||++..+...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999887655
No 441
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.96 E-value=0.21 Score=56.45 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHhhhcCCCCCccEEEEe-CccCHHHHHHHHHhcccccc--ccc-cCCc------
Q 007957 206 PGSLVLIGGDPGVGKSTL-LLQMAAIIADVHDLGEPSPVVYVS-GEESVEQIGNRADRMMIATE--ELF-LYSS------ 274 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTL-llqia~~la~~~~~~~~~~VLyis-~Ees~~qi~~R~~rl~i~~~--~i~-i~~~------ 274 (583)
.|..+++.|++|+|||+. +..++..+... +..++|+. ..+-..|+..++..+++... .+. +...
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lilaPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~ 314 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVLAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDV 314 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHH
Confidence 688999999999999996 45555444442 45788877 44456677777665544311 111 1111
Q ss_pred ccHHHHHHH-h---cccCCCEEEEccchhh
Q 007957 275 TDIEDIVEK-V---QPLSPRALIIDSIQTV 300 (583)
Q Consensus 275 ~~~e~i~~~-i---~~~~p~lVVIDsi~~l 300 (583)
..-..+... + .-.+.++|||||...+
T Consensus 315 l~~~~l~~~l~~~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 315 MCHATLTHRLMSPLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp EEHHHHHHHHHSSSCCCCCSEEEEESTTCC
T ss_pred HHhhhhHHHHhcccccccceEEEEeCCccc
Confidence 011122211 1 2246799999999865
No 442
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.93 E-value=0.3 Score=50.42 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=37.6
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||..+...+........ .+.+++|+.-. +-..|+..++..+
T Consensus 51 ~i~~i~~~-----~~~li~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 51 AIPVAITG-----RDILARAKNGTGKTAAFVIPTLEKVKPKL--NKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp HHHHHHHT-----CCEEEECCTTSCHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-----CCEEEECCCCcHHHHHHHHHHHHHHhhcc--CCccEEEEcCCHHHHHHHHHHHHHH
Confidence 45555544 44889999999999876665554433211 24478888743 3445666666544
No 443
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.91 E-value=0.1 Score=54.18 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=35.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
..-.++++.|..|+||||++..+|..++.. +.+|+.++.+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-----G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK-----GLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS-----SCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC-----CCeEEEEeCCC
Confidence 445678889999999999999999999985 78999999876
No 444
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.88 E-value=0.017 Score=59.19 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=23.7
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+.+|++++|.|+||+|||||+..+++....
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 346899999999999999999999876544
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.87 E-value=0.043 Score=55.70 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.3
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
..|++++|.|+||+|||||+..+++....
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 35789999999999999999999877654
No 446
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.84 E-value=0.35 Score=57.23 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH--HhhhcCCCCCccEEEEeCcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAI--IADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~--la~~~~~~~~~~VLyis~Ee 250 (583)
..++.|.|+.|+|||||+.+++.. +.... +..++|++...
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~F----d~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM----DFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHH----SSCEEEEECCC
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhC----CCcEEEEEeCC
Confidence 579999999999999999999853 22221 23588888654
No 447
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.80 E-value=0.29 Score=49.37 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=56.4
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHH-HHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHhccccccccc--
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLL-LQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADRMMIATEELF-- 270 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLl-lqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~rl~i~~~~i~-- 270 (583)
-+..++.| +|.-+++.+++|+|||... +-++..+.... .+..++|+.- .+-..|+...+..++-....+.
T Consensus 122 ai~~il~~---~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~---~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~ 195 (300)
T 3fmo_B 122 ALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLA 195 (300)
T ss_dssp HHHHHTSS---SCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred HHHHHHcC---CCCeEEEECCCCCCccHHHHHHHHHhhhccC---CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 45556654 3467899999999999653 34444443321 1336888863 3445566666655432110000
Q ss_pred -cCC---------------cccHHHHHHHhcc------cCCCEEEEccchhhh
Q 007957 271 -LYS---------------STDIEDIVEKVQP------LSPRALIIDSIQTVY 301 (583)
Q Consensus 271 -i~~---------------~~~~e~i~~~i~~------~~p~lVVIDsi~~l~ 301 (583)
... -.+...+.+.+.. .+.++|||||...+.
T Consensus 196 ~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 196 YAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (300)
T ss_dssp EESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHH
T ss_pred EEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHh
Confidence 000 0224555555533 247899999998775
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.78 E-value=0.072 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
++.|.|++|+||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998765
No 449
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.78 E-value=0.13 Score=53.36 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=40.4
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHh--hhcCCCCCccEEEEeCccC
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA--DVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la--~~~~~~~~~~VLyis~Ees 251 (583)
+.|+.++.. ..-.+++..|..|+||||++..+|..++ .. |.+|+.++.+..
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~-----G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP-----NKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT-----TSCEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-----CCeEEEEECCCC
Confidence 345666643 2235788889999999999999999999 64 789999999874
No 450
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.74 E-value=0.21 Score=53.25 Aligned_cols=92 Identities=16% Similarity=0.125 Sum_probs=59.4
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhcccc-cc----
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMMIA-TE---- 267 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~i~-~~---- 267 (583)
.-++.++.+ .-++|.+++|+|||..++.++... +.+++++.-. .-..|+..++..+++. ..
T Consensus 100 ~ai~~i~~~-----~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g 166 (472)
T 2fwr_A 100 KALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (472)
T ss_dssp HHHHHHTTT-----TEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSS
T ss_pred HHHHHHHhc-----CCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECC
Confidence 345556544 238899999999999888776654 2468888866 5667888888776543 11
Q ss_pred ------ccccCCcccHHHHHHHhcc--cCCCEEEEccchhhh
Q 007957 268 ------ELFLYSSTDIEDIVEKVQP--LSPRALIIDSIQTVY 301 (583)
Q Consensus 268 ------~i~i~~~~~~e~i~~~i~~--~~p~lVVIDsi~~l~ 301 (583)
++.+ .+.+.+...+.. .+.++|||||...+.
T Consensus 167 ~~~~~~~Ivv---~T~~~l~~~~~~~~~~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 167 RIKELKPLTV---STYDSAYVNAEKLGNRFMLLIFDEVHHLP 205 (472)
T ss_dssp SCBCCCSEEE---EEHHHHHHTHHHHTTTCSEEEEETGGGTT
T ss_pred CcCCcCCEEE---EEcHHHHHHHHHhcCCCCEEEEECCcCCC
Confidence 1111 123333333322 348999999998764
No 451
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.67 E-value=0.11 Score=51.15 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESV 252 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~ 252 (583)
+.+..+..|+||||++..+|..++.. +.+|++++.+...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~-----G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQ-----GKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHT-----TCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCCC
Confidence 44456788999999999999999974 6799999987543
No 452
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.62 E-value=0.93 Score=49.36 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHH-HHHHHhhhcC-CCCCccEEEEeCc-cCHHHHHHHHHh
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ-MAAIIADVHD-LGEPSPVVYVSGE-ESVEQIGNRADR 261 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllq-ia~~la~~~~-~~~~~~VLyis~E-es~~qi~~R~~r 261 (583)
-++.++.| .|.-+++.+++|+|||..... +...+..... ...+.+++|+.-. +-..|+..++..
T Consensus 102 ~i~~~l~~---~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 102 TIKPILSS---EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp HHHHHHSS---SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 55666633 578899999999999975333 3333333210 0112368888743 344566665544
No 453
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.62 E-value=0.077 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~ 230 (583)
..+++|.|.+|+||||++..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999998754
No 454
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.61 E-value=0.71 Score=50.75 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=38.0
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHH-HHHHhhhcC-CCCCccEEEEeCc-cCHHHHHHHHHh
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM-AAIIADVHD-LGEPSPVVYVSGE-ESVEQIGNRADR 261 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqi-a~~la~~~~-~~~~~~VLyis~E-es~~qi~~R~~r 261 (583)
.-++.++.+ .|.-+++.+++|+|||...... +..+..... ...+.+++|+.-. +-..|+..++..
T Consensus 50 ~~i~~il~~---~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 50 KTIKPILSS---EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp HHHHHHHCS---SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 356666633 5678999999999999753333 333332210 0113468888743 344566666554
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.61 E-value=0.084 Score=51.03 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~l 231 (583)
+..++|.|.||+||||++..++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998775
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.60 E-value=0.081 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~ 229 (583)
+-+++|.|.+|+||||++..++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.52 E-value=0.079 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
+++|.|.||+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 458
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.47 E-value=0.093 Score=51.48 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=33.5
Q ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLIG-GDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI~-G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.++.|+ +..|+||||++..+|..++.. +.+|++++.+..
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARL-----GKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHT-----TCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHC-----CCCEEEEECCCC
Confidence 4566665 788999999999999999974 789999998753
No 459
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=92.47 E-value=0.044 Score=48.04 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=22.2
Q ss_pred CceeECCCCCCCCc--ccee-cCCccccccc
Q 007957 113 RTNWVCSDCGYTDG--QWWG-MCRACESVGT 140 (583)
Q Consensus 113 ~~~~~C~~CG~~~~--~w~g-~Cp~C~~w~t 140 (583)
...|.|.+||+.+. .... .||.|+..+.
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 46899999999864 3555 8999998754
No 460
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.46 E-value=0.13 Score=52.86 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
-.++++.|..|+||||++..+|..++.. |.+|++++.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~-----G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV-----RSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS-----SSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC-----CCeEEEEECCCC
Confidence 3578899999999999999999999974 789999999865
No 461
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.43 E-value=0.17 Score=52.61 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=39.7
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHh--hhcCCCCCccEEEEeCcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA--DVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la--~~~~~~~~~~VLyis~Ee 250 (583)
.|+.++.. ..-.++++.|..|+||||++..+|..++ .. +.+|+.++.+.
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~-----g~~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP-----NEQFLLISTDP 58 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT-----TSCEEEEECCS
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-----CCeEEEEECCC
Confidence 45556643 2337999999999999999999999998 54 78999999983
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.40 E-value=0.083 Score=49.60 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~ 229 (583)
.|.-++|.|++|+||||+++.+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 463
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.38 E-value=0.15 Score=48.99 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=32.5
Q ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccC
Q 007957 207 GSLVLIG-GDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEES 251 (583)
Q Consensus 207 GsvilI~-G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees 251 (583)
+.++.++ +..|+||||++..+|..++.. .+.+|++++.+..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~----~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQE----PDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTS----TTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhC----cCCCEEEEECCCC
Confidence 4455554 678999999999999999873 1679999998743
No 464
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.37 E-value=0.14 Score=52.98 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=39.1
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
.|+.++... .-.++++.|..|+||||++..+|..++.. +.+|+.++.+.
T Consensus 6 ~l~~~l~~~--~~~i~~~sgkGGvGKTt~a~~lA~~la~~-----g~~vllid~D~ 54 (334)
T 3iqw_A 6 TLQSILDQR--SLRWIFVGGKGGVGKTTTSCSLAIQLAKV-----RRSVLLLSTDP 54 (334)
T ss_dssp SSHHHHHCT--TCCEEEEECSTTSSHHHHHHHHHHHHTTS-----SSCEEEEECCS
T ss_pred cHHHHhcCC--CeEEEEEeCCCCccHHHHHHHHHHHHHhC-----CCcEEEEECCC
Confidence 345555432 23688999999999999999999999874 78999999984
No 465
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.33 E-value=0.078 Score=51.99 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee 250 (583)
-+++|.|.+|+||||++..++..+....-+..+..+++++.++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 4899999999999999999988654210000023577777654
No 466
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.26 E-value=0.13 Score=58.01 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=25.2
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la 232 (583)
+.++..++|.|++|+|||||+..++....
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 35788999999999999999999987643
No 467
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.25 E-value=0.23 Score=54.50 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=47.5
Q ss_pred cccccCCCChhhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHh
Q 007957 184 WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADR 261 (583)
Q Consensus 184 ~Ri~t~Gi~~~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~r 261 (583)
+-+.| |+ .-+|-++. +.+|+-.+|.|++|+|||+|+.+++.... ..-++|+-..+..+++..-.+.
T Consensus 209 epl~T-Gi--rvID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~~-------~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 209 VPLIT-GQ--RVIDTFFP--QAKGGTAAIPGPAGSGKTVTQHQLAKWSD-------AQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp SEECC-SC--HHHHHHSC--EETTCEEEECSCCSHHHHHHHHHHHHHSS-------CSEEEEEECCSSSSHHHHHHHH
T ss_pred ccccc-Cc--chhhccCC--cccCCeEEeecCCCCCHHHHHHHHHhccC-------CCEEEEEEecccHHHHHHHHHH
Confidence 34555 88 88999884 67899999999999999999999865421 2357777766555555444333
No 468
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.21 E-value=0.077 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~ 230 (583)
.++|.|++|+|||||+..++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999753
No 469
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.14 E-value=0.15 Score=48.60 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=46.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCccCHHHHHHHHHhccccccccccCCcccHHHHHHHhcccC
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ees~~qi~~R~~rl~i~~~~i~i~~~~~~e~i~~~i~~~~ 288 (583)
+.+..+..|+||||++..+|..++.. + +|++++.+.... ....+..-.++ ..+++.. .++.+ ...
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~-----g-~VlliD~D~q~~-~~~~~~~~~l~---~~vi~~~----~l~~l-~~~ 67 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQ-----G-ETLLIDGDPNRS-ATGWGKRGSLP---FKVVDER----QAAKY-APK 67 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTT-----S-CEEEEEECTTCH-HHHHHHHSCCS---SEEEEGG----GHHHH-GGG
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhc-----C-CEEEEECCCCCC-HHHHhcCCCCC---cceeCHH----HHHHh-hhc
Confidence 34557899999999999999999974 7 999999875322 22222110011 0122222 22223 245
Q ss_pred CCEEEEccchh
Q 007957 289 PRALIIDSIQT 299 (583)
Q Consensus 289 p~lVVIDsi~~ 299 (583)
++++|||.+..
T Consensus 68 yD~viiD~p~~ 78 (209)
T 3cwq_A 68 YQNIVIDTQAR 78 (209)
T ss_dssp CSEEEEEEECC
T ss_pred CCEEEEeCCCC
Confidence 89999998754
No 470
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.14 E-value=0.087 Score=56.04 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.8
Q ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 204 LVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 204 i~~GsvilI~G~pG~GKTTLllqia~~la~ 233 (583)
+..|.+++|.|+||+|||||+..++..+..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 345789999999999999999999887653
No 471
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.13 E-value=0.085 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.|.||+||||++..++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 472
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.09 E-value=0.15 Score=49.14 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhh
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADV 234 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~la~~ 234 (583)
+|-++.|.|.+|+||||++..++..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999888763
No 473
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=91.99 E-value=0.19 Score=58.94 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=44.9
Q ss_pred CCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 289 p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
++++|+||+++.+ +......+...|.++. +.|.|||+|+|.... +. .||.|+.|.
T Consensus 542 ~~llILDEPTagL---------dp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~~--------i~-~ADrIi~Lg 596 (993)
T 2ygr_A 542 GVLYVLDEPSIGL---------HQRDNRRLIETLTRLR-DLGNTLIVVEHDEDT--------IE-HADWIVDIG 596 (993)
T ss_dssp SCEEEEECTTTTC---------CHHHHHHHHHHHHHHH-HTTCEEEEECCCHHH--------HH-TCSEEEEEC
T ss_pred CcEEEEeCcccCC---------CHHHHHHHHHHHHHHH-HcCCEEEEECCCHHH--------HH-hCCEEEEec
Confidence 6899999999876 5666777787887774 579999999999743 65 699999994
No 474
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.99 E-value=0.51 Score=56.38 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=41.6
Q ss_pred hhhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeC-ccCHHHHHHHHHhcc
Q 007957 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG-EESVEQIGNRADRMM 263 (583)
Q Consensus 194 ~eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~-Ees~~qi~~R~~rl~ 263 (583)
.-+..++. |.-+++.+++|+|||.+.+..+...... +..++++.- .+-..|+..++..++
T Consensus 85 ~ai~~il~-----g~dvlv~ApTGSGKTl~~l~~il~~~~~-----~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 85 LWAKRIVQ-----GKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp HHHHHHTT-----TCCEEECCSTTCCHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred HHHHHHHc-----CCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCeEEEEechHHHHHHHHHHHHHhh
Confidence 35666664 3567899999999999776665555532 567888774 345667888877754
No 475
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=91.99 E-value=0.035 Score=45.16 Aligned_cols=30 Identities=30% Similarity=0.675 Sum_probs=24.2
Q ss_pred CceeECCCCCCCCcc---cee-cCCccccccccc
Q 007957 113 RTNWVCSDCGYTDGQ---WWG-MCRACESVGTMK 142 (583)
Q Consensus 113 ~~~~~C~~CG~~~~~---w~g-~Cp~C~~w~t~~ 142 (583)
+..-.|.+||..+.. |+| +||.|+++||-.
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~ 68 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESYNTAQ 68 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEE
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCcCeEe
Confidence 345689999998865 566 899999999964
No 476
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.96 E-value=0.096 Score=55.38 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 202 GGi~~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
|-+..|..++|.|+||+|||||+..+++.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45677889999999999999999999884
No 477
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.93 E-value=0.18 Score=56.46 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=39.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCcc-CHHHHHHHHHhcc
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE-SVEQIGNRADRMM 263 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~Ee-s~~qi~~R~~rl~ 263 (583)
..+++|.|+||+|||+++..++..+... .+.+|++.+.-. ..+++..++...+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 3588999999999999999998887652 256788887543 4567777765544
No 478
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.86 E-value=0.1 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 205 VPGSLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 205 ~~GsvilI~G~pG~GKTTLllqia~~l 231 (583)
.+| +++|.|+||+|||||+..+....
T Consensus 25 ~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 25 PEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 567 99999999999999999998643
No 479
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.84 E-value=0.041 Score=45.18 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=20.8
Q ss_pred CceeECCCCCCCCccce----ecCCcccc
Q 007957 113 RTNWVCSDCGYTDGQWW----GMCRACES 137 (583)
Q Consensus 113 ~~~~~C~~CG~~~~~w~----g~Cp~C~~ 137 (583)
...|.|++||....++. |+|+.|+.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCC
Confidence 45899999999776654 89999995
No 480
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.84 E-value=0.098 Score=49.46 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~l 231 (583)
.++|.||+|+|||||+..+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987664
No 481
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.80 E-value=0.075 Score=48.94 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAA 229 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~ 229 (583)
-++|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999876
No 482
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=91.75 E-value=0.053 Score=48.92 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=22.6
Q ss_pred CceeECCCCCCCCc--c-----------c----------eecCCccccccc
Q 007957 113 RTNWVCSDCGYTDG--Q-----------W----------WGMCRACESVGT 140 (583)
Q Consensus 113 ~~~~~C~~CG~~~~--~-----------w----------~g~Cp~C~~w~t 140 (583)
...|.|.+|||... . . ..+||.||+.+.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 56899999999864 2 3 678999998765
No 483
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=91.72 E-value=0.17 Score=59.19 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCCEEEEccchhhhhhcccCCCCCHHHHHHHHHHHHHHHHcCCCcEEEecccCCccCcCCccchheeccEEEEEe
Q 007957 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362 (583)
Q Consensus 288 ~p~lVVIDsi~~l~~~~~~~~~g~~~qvrei~~~L~~lAk~~g~tVIlisH~~k~g~~ag~~~Le~~aD~Vl~Le 362 (583)
.|+++|+||+++.+ +......++..|.++ ++.|.|||+++|.... +. .||.|+.|.
T Consensus 524 ~~~llILDEPTagL---------dp~~~~~L~~~L~~L-r~~G~TVIvVeHdl~~--------i~-~ADrIi~Lg 579 (972)
T 2r6f_A 524 TGVLYVLDEPSIGL---------HQRDNDRLIATLKSM-RDLGNTLIVVEHDEDT--------ML-AADYLIDIG 579 (972)
T ss_dssp CSCEEEEECTTTTC---------CGGGHHHHHHHHHHH-HTTTCEEEEECCCHHH--------HH-SCSEEEEEC
T ss_pred CCCEEEEeCcccCC---------CHHHHHHHHHHHHHH-HhCCCEEEEEecCHHH--------HH-hCCEEEEeC
Confidence 36999999999876 333455666666666 4679999999999743 65 599999994
No 484
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.67 E-value=0.48 Score=46.53 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=35.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHhhhc-CCCCCccEEEEeC-ccCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA-IIADVH-DLGEPSPVVYVSG-EESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~-~la~~~-~~~~~~~VLyis~-Ees~~qi~~R~~rl 262 (583)
-+..++.| .-+++.+++|+|||......+. .+.... ....+.+++|+.- .+-..|+..++..+
T Consensus 84 ~i~~~~~~-----~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 84 SIRPLLEG-----RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp HHHHHHHT-----CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 45555544 4478999999999976444333 332210 0001456888864 34455666666554
No 485
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.67 E-value=0.82 Score=44.03 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=34.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHhhhc--CCCCCccEEEEeCc-cCHHHHHHHHHh
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA-IIADVH--DLGEPSPVVYVSGE-ESVEQIGNRADR 261 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~-~la~~~--~~~~~~~VLyis~E-es~~qi~~R~~r 261 (583)
-++.++.| .-+++.+++|+|||......+. .+.... ....+..++|+.-- +-..|+...+..
T Consensus 59 ~i~~~~~g-----~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 59 GWPVALSG-----LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp HHHHHHHT-----CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 45555543 5678889999999976444333 332210 01124568888743 334566555544
No 486
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=91.65 E-value=0.063 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=21.5
Q ss_pred CCceeECCCCCCCCcccee--cCCccccc
Q 007957 112 NRTNWVCSDCGYTDGQWWG--MCRACESV 138 (583)
Q Consensus 112 ~~~~~~C~~CG~~~~~w~g--~Cp~C~~w 138 (583)
....|+|..||+.+..... .||.||+-
T Consensus 129 ~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp CCCCEEESSSCCEESSCCGGGBCTTTCCB
T ss_pred ccEEEECCCCCCcccCCCCCCcCCCCCCc
Confidence 3458999999998876543 79999963
No 487
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.63 E-value=0.43 Score=45.16 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=36.0
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++.| .-+++.+++|+|||......+....... ..+.+++|+.-- +-..|+..++..+
T Consensus 34 ~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 34 IIPGALRG-----ESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp HHHHHHHT-----CCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 45555543 4578999999999976554444332211 124578888743 4445665555443
No 488
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.62 E-value=0.077 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAII 231 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~l 231 (583)
.+++|.|.+|+|||||+..+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999998764
No 489
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.60 E-value=0.4 Score=49.74 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=38.2
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMM 263 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~ 263 (583)
-+..++.| .-+++.+++|+|||......+....... ..+.+++++.-. +-..|+..++..++
T Consensus 67 ai~~i~~~-----~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 67 AIKQIIKG-----RDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhCC-----CCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 45566644 4488999999999976665544433211 124578888743 34556666665543
No 490
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.58 E-value=0.1 Score=54.32 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=24.2
Q ss_pred cCCeE--EEEEcCCCCCHHHHHHHHHHHHhh
Q 007957 205 VPGSL--VLIGGDPGVGKSTLLLQMAAIIAD 233 (583)
Q Consensus 205 ~~Gsv--ilI~G~pG~GKTTLllqia~~la~ 233 (583)
.+|+. ++|.|+||+||||++..++..+..
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44555 999999999999999999887653
No 491
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=91.58 E-value=0.099 Score=42.56 Aligned_cols=29 Identities=21% Similarity=0.607 Sum_probs=22.0
Q ss_pred CceeECCCCCCCCcc--------------c-----eecCCcccccccc
Q 007957 113 RTNWVCSDCGYTDGQ--------------W-----WGMCRACESVGTM 141 (583)
Q Consensus 113 ~~~~~C~~CG~~~~~--------------w-----~g~Cp~C~~w~t~ 141 (583)
...|+|..|||.+-- | -|.||.|+.-.+.
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~ 72 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGG
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHH
Confidence 458999999998752 1 2799999986543
No 492
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.54 E-value=0.1 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 007957 208 SLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 208 svilI~G~pG~GKTTLllqia~~ 230 (583)
.+++|.|.||+||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998763
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.44 E-value=0.12 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 206 PGSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 206 ~GsvilI~G~pG~GKTTLllqia~~ 230 (583)
++.+++|.|++|+|||||+..+|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998754
No 494
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.40 E-value=0.11 Score=45.83 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~ 230 (583)
-++|.|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998754
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.38 E-value=0.11 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~ 230 (583)
.++|.|++|+|||||+..++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
No 496
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=91.37 E-value=0.14 Score=50.75 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=39.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhcc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRMM 263 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl~ 263 (583)
.++.++.+ .-.+|.+++|+|||..+..++...... ...+++|+.-- +-..|+..++..++
T Consensus 121 ai~~~l~~-----~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 121 AVFEGLVN-----RRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp HHHHHHHH-----SEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----CCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 45555543 234779999999999998777665543 13479998743 44567777766554
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.37 E-value=0.12 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~ 230 (583)
-++|.|++|+|||||+..++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 498
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=91.34 E-value=1.1 Score=44.46 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.9
Q ss_pred hhhHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHhhhcCCCCCccEEEEeCc-cCHHHHHHHHHhc
Q 007957 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-ESVEQIGNRADRM 262 (583)
Q Consensus 195 eLD~vLgGGi~~GsvilI~G~pG~GKTTLllqia~~la~~~~~~~~~~VLyis~E-es~~qi~~R~~rl 262 (583)
-++.++. |.-+++.+++|+|||......+.. . +.+++|+.-- +-..|+..++..+
T Consensus 24 ~i~~i~~-----~~~~lv~~~TGsGKT~~~~~~~~~--~------~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 24 TIPLMLQ-----GKNVVVRAKTGSGKTAAYAIPILE--L------GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HHHHHHT-----TCCEEEECCTTSSHHHHHHHHHHH--H------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCEEEEcCCCCcHHHHHHHHHHh--h------cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4555554 346889999999999876655433 2 3568888743 3446666666544
No 499
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.33 E-value=0.12 Score=45.79 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 007957 209 LVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 209 vilI~G~pG~GKTTLllqia~~ 230 (583)
-++|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 500
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.27 E-value=0.13 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 007957 207 GSLVLIGGDPGVGKSTLLLQMAAI 230 (583)
Q Consensus 207 GsvilI~G~pG~GKTTLllqia~~ 230 (583)
--+++|+|.+|+||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999865
Done!