BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007960
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 37 IVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQR 96
+ KAT HE ++KH+ ++ T I + + +R + +W V K+LI
Sbjct: 33 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91
Query: 97 LLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER-LEFRM 155
L+ G+ + Q + ++R L N+S+F D S +D S F+R Y+ YL+E+ + +R
Sbjct: 92 LMVYGNERFIQ--YLASR--NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147
Query: 156 QG---RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHLFSRIQHLQQVLERFLACR 212
+ KR G+ +R M E L + +Q ++ L
Sbjct: 148 VAFDFTKVKRGADGV------------------MRTMNTEKLLKTVPIIQNQMDALLDFN 189
Query: 213 PTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSK 272
+ N V+ A + K++ +++ E + L++++ +++ + DI+ +
Sbjct: 190 VNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLT 249
Query: 273 QYDELDSFYGWCKTVGIAR 291
+ + F + VGI R
Sbjct: 250 RMTRISEFLKVAEQVGIDR 268
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 37 IVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQR 96
+ KAT HE ++KH+ ++ T I + + +R + +W V K+LI
Sbjct: 26 VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 84
Query: 97 LLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER-LEFRM 155
L+ G+ + Q + ++R L N+S+F D S +D S F+R Y+ YL+E+ + +R
Sbjct: 85 LMVYGNERFIQ--YLASR--NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 140
Query: 156 QG---RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHLFSRIQHLQQVLERFLACR 212
+ KR G+ +R M E L + +Q ++ L
Sbjct: 141 VAFDFTKVKRGADGV------------------MRTMNTEKLLKTVPIIQNQMDALLDFN 182
Query: 213 PTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSK 272
+ N V+ A + K++ +++ E + L++++ +++ + DI+ +
Sbjct: 183 VNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLT 242
Query: 273 QYDELDSFYGWCKTVGIAR 291
+ + F + VGI R
Sbjct: 243 RMTRISEFLKVAEQVGIDR 261
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 112/261 (42%), Gaps = 27/261 (10%)
Query: 36 AIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQ 95
+ KAT HE ++KH+ ++ T I + + +R + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTH 90
Query: 96 RLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER-LEFR 154
L+ G+ + Q + ++R L N+S+F D S +D S F+R Y+ YL+E+ + +R
Sbjct: 91 HLMVYGNERFIQ--YLASR--NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYR 146
Query: 155 MQG---RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHLFSRIQHLQQVLERFLAC 211
+ KR G+ +R M E L + +Q ++ L
Sbjct: 147 QVAFDFTKVKRGADGV------------------MRTMNTEKLLKTVPIIQNQMDALLDF 188
Query: 212 RPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVS 271
+ N V+ A + K++ +++ E + L++++ +++ + DI+ +
Sbjct: 189 NVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFL 248
Query: 272 KQYDELDSFYGWCKTVGIARS 292
+ + F + VGI R
Sbjct: 249 TRMTRISEFLKVAEQVGIDRG 269
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 112/261 (42%), Gaps = 27/261 (10%)
Query: 36 AIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQ 95
+ KAT HE ++KH+ ++ T I + + +R + +W V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTH 90
Query: 96 RLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER-LEFR 154
L+ G+ + Q + ++R L N+S+F D S +D S F+R Y+ YL+E+ + +R
Sbjct: 91 HLMVYGNERFIQ--YLASR--NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYR 146
Query: 155 MQG---RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHLFSRIQHLQQVLERFLAC 211
+ KR G+ +R M E L + +Q ++ L
Sbjct: 147 QVAFDFTKVKRGADGV------------------MRTMNTEKLLKTVPIIQNQMDALLDF 188
Query: 212 RPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVS 271
+ N V+ A + K++ +++ E + L++++ +++ + DI+ +
Sbjct: 189 NVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFL 248
Query: 272 KQYDELDSFYGWCKTVGIARS 292
+ + F + VGI R
Sbjct: 249 TRMTRISEFLKVAEQVGIDRG 269
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLI 92
L ++ KAT E ++KH+ ++ I N++ +R ++ NW V K+LI
Sbjct: 24 LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER-SQNANWVVVYKSLI 82
Query: 93 LIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSN-----------SWDYSAFVR 141
L++ G+ + Q + ++ T N+S F D +D S F+R
Sbjct: 83 TTHHLMAYGNERFMQ--YLASSNST--FNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIR 138
Query: 142 TYALYLDER-LEFRMQG------RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHL 194
YA YL+E+ L +R +RGK +R M E L
Sbjct: 139 RYAKYLNEKSLSYRAMAFDFCKVKRGKEE--------------------GSLRSMNAEKL 178
Query: 195 FSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFME 254
+ LQ L+ L + +N V+ ++ + ++ +++ + + L++++ +
Sbjct: 179 LKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFD 238
Query: 255 LEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVER 300
+ + D++ + + D + F + VGI + + P++ +
Sbjct: 239 MNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTK 283
>pdb|2RPZ|A Chain A, Solution Structure Of The Monomeric Form Of Mouse Apobec2
Length = 192
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 43 HEEYPAEEKHIREIL---------SLTCY-SRAYISACVNIISKRLNKTKNWTVALKTLI 92
H AEE IL ++T Y S + +AC + I K L+KTKN L+ LI
Sbjct: 56 HAGAHAEEAFFNTILPAFDPALKYNVTWYVSSSPCAACADRILKTLSKTKN----LRLLI 111
Query: 93 LIQRLLSEGDP 103
L+ RL +P
Sbjct: 112 LVSRLFMWEEP 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,832,755
Number of Sequences: 62578
Number of extensions: 491471
Number of successful extensions: 1162
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 7
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)