Query 007960
Match_columns 583
No_of_seqs 223 out of 485
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 2.7E-90 5.8E-95 749.2 30.6 476 8-554 1-490 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 2.3E-67 4.9E-72 536.9 21.2 276 31-316 2-280 (280)
3 KOG0980 Actin-binding protein 100.0 6E-48 1.3E-52 427.8 18.3 266 30-314 4-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 3.3E-32 7.2E-37 245.9 12.1 117 33-154 1-117 (117)
5 smart00273 ENTH Epsin N-termin 99.9 1.7E-27 3.7E-32 217.8 11.5 123 31-157 1-123 (127)
6 PF01417 ENTH: ENTH domain; I 99.2 5.8E-11 1.3E-15 108.6 11.2 118 30-152 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.1 3.5E-10 7.6E-15 101.6 10.3 112 33-150 1-112 (115)
8 cd03571 ENTH_epsin ENTH domain 98.7 9.4E-08 2E-12 87.9 10.5 114 33-151 2-116 (123)
9 cd03572 ENTH_epsin_related ENT 97.9 4.9E-05 1.1E-09 70.0 8.7 109 36-148 5-114 (122)
10 KOG2056 Equilibrative nucleosi 97.8 0.00011 2.5E-09 77.6 9.6 131 11-152 6-137 (336)
11 cd03568 VHS_STAM VHS domain fa 95.6 0.06 1.3E-06 51.0 8.5 77 33-110 1-77 (144)
12 cd03569 VHS_Hrs_Vps27p VHS dom 95.5 0.086 1.9E-06 49.8 9.2 79 31-110 3-81 (142)
13 cd03567 VHS_GGA VHS domain fam 95.4 0.082 1.8E-06 49.9 8.7 77 33-110 2-78 (139)
14 PF00790 VHS: VHS domain; Int 95.3 0.084 1.8E-06 49.3 8.5 79 30-109 3-81 (140)
15 cd03565 VHS_Tom1 VHS domain fa 95.0 0.15 3.3E-06 48.1 9.0 77 33-109 2-78 (141)
16 smart00288 VHS Domain present 94.9 0.14 3E-06 47.7 8.5 77 33-110 1-77 (133)
17 cd03561 VHS VHS domain family; 94.1 0.26 5.7E-06 45.6 8.5 76 34-110 2-77 (133)
18 KOG2057 Predicted equilibrativ 93.2 0.23 5E-06 52.6 7.1 117 29-149 20-139 (499)
19 KOG2199 Signal transducing ada 86.7 2.6 5.6E-05 46.1 8.2 79 30-109 6-84 (462)
20 KOG1087 Cytosolic sorting prot 74.7 1.6E+02 0.0034 33.5 17.8 73 33-106 2-74 (470)
21 KOG0414 Chromosome condensatio 56.3 1.5E+02 0.0032 37.2 13.0 189 69-290 359-574 (1251)
22 KOG1086 Cytosolic sorting prot 42.4 64 0.0014 36.2 6.6 81 30-111 6-86 (594)
23 KOG1924 RhoA GTPase effector D 28.7 1.2E+03 0.025 28.7 15.3 26 141-166 422-447 (1102)
24 PF14131 DUF4298: Domain of un 27.8 2.3E+02 0.005 24.7 6.7 46 231-288 2-50 (90)
25 PF02042 RWP-RK: RWP-RK domain 25.7 70 0.0015 25.5 2.7 36 246-290 7-42 (52)
26 PF14767 RPA_interact_M: Repli 25.3 90 0.0019 27.1 3.6 24 534-557 45-69 (83)
27 KOG3520 Predicted guanine nucl 24.2 2.6E+02 0.0057 35.1 8.3 70 222-297 447-530 (1167)
28 PF02184 HAT: HAT (Half-A-TPR) 23.3 59 0.0013 23.5 1.7 25 261-285 4-28 (32)
29 cd06895 PX_PLD The phosphoinos 21.9 1.5E+02 0.0034 28.0 4.8 23 294-316 90-121 (140)
30 PF15053 Njmu-R1: Mjmu-R1-like 21.1 1.6E+02 0.0035 32.1 5.1 64 245-316 277-353 (353)
31 KOG1915 Cell cycle control pro 21.0 75 0.0016 36.3 2.8 66 191-285 150-215 (677)
32 PF10880 DUF2673: Protein of u 20.8 58 0.0013 26.4 1.4 27 520-552 17-46 (65)
33 PF14091 DUF4269: Domain of un 20.2 1.2E+02 0.0026 29.3 3.7 31 86-116 98-128 (152)
34 PF08832 SRC-1: Steroid recept 20.0 54 0.0012 28.3 1.1 12 93-104 58-70 (78)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-90 Score=749.19 Aligned_cols=476 Identities=39% Similarity=0.588 Sum_probs=363.7
Q ss_pred HHHHHhhhcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHH
Q 007960 8 KAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVA 87 (583)
Q Consensus 8 ka~GalKD~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVA 87 (583)
+|+|++||++|+|+|+| ++.+++|++||+|||+|+++|||+|||+.||.+|+.+|+++.+|+++|++||++||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v--~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASV--ASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHh--hhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeeh
Confidence 47999999999999999 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh-hhhccCCCCCcccc
Q 007960 88 LKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE-FRMQGRRGKRSMFG 166 (583)
Q Consensus 88 lKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~-F~~~~~~~~~g~~d 166 (583)
+|+||||||||++|++.|.+|+.++ +++|+|++|+|++++.+|||++|||+|++||+||++ |++. ++|
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~-------~~d 147 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVL-------GFD 147 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHh-------ccc
Confidence 9999999999999999999999765 368999999999988999999999999999999999 7777 444
Q ss_pred ccchhhhhcccccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHHHHHHHH
Q 007960 167 IDEDEEEASSAPACARATPVRDMK-IEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEIL 245 (583)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~lr~l~-~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~~i~egl 245 (583)
++.... .+.....+.+. .+.+|++++.||.||+++|+|+|++.+.+|.+|++||.+||+|||+||+.||+||
T Consensus 148 ~~~~~~-------~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi 220 (491)
T KOG0251|consen 148 IEKVKR-------GKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGI 220 (491)
T ss_pred cccccC-------cccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221 11234455666 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHHHHHHHHhhhhhhhhcccc
Q 007960 246 GILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKN 325 (583)
Q Consensus 246 ~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~~LEEylrd~~~~~~~~~~ 325 (583)
++|+|+||||+++||+++|+|||||.+|+++|.+||++||++|+.|.++||+|+++|.++|++|||||++..........
T Consensus 221 ~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~ 300 (491)
T KOG0251|consen 221 INLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAK 300 (491)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875433221
Q ss_pred ccccCCCCCC--cCCCCCC----cccccCCcccccccCCCCCCCCC--CCCcchhhccccccCCCCCCCccccCCCCCCC
Q 007960 326 VDFQLTNEPE--QEQDDND----KDAETTNQEDMNETKALPAPEES--TPAEEEKKEENVKQETKDTEKEADLLNLGEDS 397 (583)
Q Consensus 326 ~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dll~l~~~~ 397 (583)
. .+... .+.+.++ .+.+.+.++ + +++.+.+... ..|.+.+ +.+...++......+||+.++...
T Consensus 301 ~----~~~~~~~~~~~~~e~~~~~~~~~e~~~-~--i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T KOG0251|consen 301 V----SPVSQFSTDFESSESSSRLEEPEEQKE-V--IEELQEPLEQEEDQPSPNS-ENPEANDQAGIATDDLLLQPDNLP 372 (491)
T ss_pred c----CCccccccchhccccccccccchhhhh-c--cccccccccccccCCCCCC-CCccccccccccCcchhhcccCCC
Confidence 1 11110 0001000 011111211 2 4444433211 2121111 111111110011124555555443
Q ss_pred -CChHHHhccccccccccCCCCCCCCCCCCcccc--ccCCCCccchhhhhccccccccccccccCCchhhhhhhhchhHH
Q 007960 398 -ATCDEQADKLALALFDSGNAPVDQAGAGRTAWE--AFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGA 474 (583)
Q Consensus 398 -~~~~e~~~~~alal~~~~~~~~~~~~~~~~~~~--~f~~~~~~WElaLV~~~s~~~~~~~~l~Gg~d~l~Ld~~y~~~~ 474 (583)
.++.+..|+||||+ . .+. .+ ..+|+ .+..+.++|++ .++ + ++|||| +||||| ++.
T Consensus 373 ~~~~~~~~~~l~~~~-~-~~~----~~--~~~~~~~~~~~~~~~~~~----~~~----~--~~~g~~---~~~~~~-~~~ 430 (491)
T KOG0251|consen 373 MFSASTAPNALALAL-P-FPN----HT--GSGWGLPAATPDSAAWET----ATM----Q--ALAGGL---TLNSMV-NNP 430 (491)
T ss_pred ccccccCcchhhcCC-C-CCC----CC--CCccccccCCcchhhhhh----ccc----c--cccccc---eecccc-CCc
Confidence 56678999999999 2 221 11 33455 44455556665 111 2 899999 999999 888
Q ss_pred HHHHhhhhc-cCCCCcccccCCCCCcccccCCCCCCCCCCCCCCCCccccccCCCCCchhchHHHHHHHHHHHHHHHHHH
Q 007960 475 TAVAMASAE-ASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQ 553 (583)
Q Consensus 475 ~~~~~~~~~-~~g~~~sv~~~~~~~~~~~~~p~p~~~~~~~~~~~dpFaaS~~v~pp~~vqma~m~~~q~ll~~eq~~w~ 553 (583)
+++.++.++ ++|++++++.|. .++++++.| +||+.|..+++| + ..+|.++.|||+|||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~-----------~~~~~~~~~a~~------~-~~~~~~~~~~q~~~~ 489 (491)
T KOG0251|consen 431 FRATVQTAPQGQGSQPFGAQPM---PAMAALPQP-----------YPVGQPPFPAQL------E-MAAQNAAQQQQQQAQ 489 (491)
T ss_pred hhhhccccccccCCCccccCCc---hhhhccccc-----------CCCCCCCCcCcc------h-hhhhhhccccccccc
Confidence 887765544 778888888774 224445433 555555555555 3 456677888899998
Q ss_pred H
Q 007960 554 Q 554 (583)
Q Consensus 554 q 554 (583)
|
T Consensus 490 ~ 490 (491)
T KOG0251|consen 490 Q 490 (491)
T ss_pred C
Confidence 7
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=2.3e-67 Score=536.87 Aligned_cols=276 Identities=42% Similarity=0.715 Sum_probs=217.8
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
+++++||+|||+|+++|||+||||+||.+|+. +.+++.|+|+|++|+++++||+||||+||+||||||||||.|.+++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 58999999999999999999999999999999 88899999999999999999999999999999999999999999998
Q ss_pred HhhhcCCcccccccccc--CCCCCCCcchHHHHHHHHHHHHHHhhhhccCCCCCccccccchhhhhcccccCCCCCCC-C
Q 007960 111 FSTRRGTRLLNMSDFRD--TSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIDEDEEEASSAPACARATPV-R 187 (583)
Q Consensus 111 ~~srrg~~~LnLs~F~D--~s~~~s~dysafVR~Ya~YLdeRL~F~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~l-r 187 (583)
++.++ ++++.++|+ ++++.+|+|+.|||+|++||++|+.||.+++. ++|++.......... ...... .
T Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~-~~g~~~~~~~~~~~~-----~~~~~~~~ 151 (280)
T PF07651_consen 81 RYNRR---LFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKI-DPGNLEREEEGSLVS-----RDDPNSRK 151 (280)
T ss_dssp HTT--------TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----CCCS--S----------TTSHCC-
T ss_pred Hcccc---hhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccc-ccccccccccccccc-----ccCccccc
Confidence 77543 445555554 67788999999999999999999998888765 445565544331100 011112 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 007960 188 DMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIF 267 (583)
Q Consensus 188 ~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiy 267 (583)
.+++.+||++++.||++|+++++|+|.+.+.+|+|+++||++||+||++||+.+|++|++||++||+|++.||.++++||
T Consensus 152 ~~~~~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~ 231 (280)
T PF07651_consen 152 SLDIDDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIY 231 (280)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHHHHHHHHhhh
Q 007960 268 CRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDK 316 (583)
Q Consensus 268 krf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~~LEEylrd~ 316 (583)
+||.+|+++|++||++||+++++++++||+|+++|++|+.+|||||+|+
T Consensus 232 ~rf~~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~~ 280 (280)
T PF07651_consen 232 KRFAKQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRDP 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999984
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=6e-48 Score=427.82 Aligned_cols=266 Identities=17% Similarity=0.242 Sum_probs=240.3
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
...+.+||.|||+.+|+|||+||||+||++||..++ +.+||...+|++...+.+.+||+|||||||||||||++..|.
T Consensus 4 d~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks--a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es 81 (980)
T KOG0980|consen 4 DRAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS--SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEES 81 (980)
T ss_pred hHHHHHHHHHHhccccCCCchhhhhheeeeeccccc--chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 357889999999999999999999999999999998 567999999999999999999999999999999999999999
Q ss_pred HHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHhhhhccCCCCCccccccchhhhhcccccCCCCCCCCCC
Q 007960 110 FFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDM 189 (583)
Q Consensus 110 ~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~F~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~lr~l 189 (583)
+++. .++..|+.+|++-+ .|||.+||.|++||..||.||.+||. |+|+++|.++.+.+. .++.+..++|
T Consensus 82 ~r~r---~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~-FpGtle~s~~~l~~a----v~D~n~~fel 150 (980)
T KOG0980|consen 82 QRYK---KWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPV-FPGTLEYSDYQLLTA----VDDLNNGFEL 150 (980)
T ss_pred HHHH---HHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCC-CCCCccccHHHHHHH----hccHHHHHHH
Confidence 8874 37899999998644 78999999999999999999999998 899999998887654 2356677888
Q ss_pred CHH--HHHHHHHHHHHHHHHHHccCcC-CCCCCchHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHH
Q 007960 190 KIE--HLFSRIQHLQQVLERFLACRPT-GSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDI 266 (583)
Q Consensus 190 ~~e--~LL~~L~~LQ~Lldrll~crp~-g~a~~N~~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kalei 266 (583)
+++ +++|.+..||+.||+.++..+. +...+|+|+++||++||.||++||++++.+|++||+.. .+|++.+|
T Consensus 151 tvdmmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs~v----p~dtLegh-- 224 (980)
T KOG0980|consen 151 TVDMMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHSQV----PPDTLEGH-- 224 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHcCC----CHHHhhhH--
Confidence 887 3777777889999999985443 56789999999999999999999999999999999997 49999987
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccc-ccCCCCCCCchHHHHH--HHHHHh
Q 007960 267 FCRVSKQYDELDSFYGWCKTVGIARS-SEYPEVERITYKKLEL--MDDFIR 314 (583)
Q Consensus 267 ykrf~kQ~e~L~~Fy~~Ck~l~~~r~-~eiP~L~~~P~~fL~~--LEEylr 314 (583)
+.||..||++|++||+.|+++.|++. ++||.||+-||+|+.. |++|+.
T Consensus 225 RdRf~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 225 RDRFHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 67999999999999999999999977 6999999999999988 888876
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=3.3e-32 Score=245.87 Aligned_cols=117 Identities=49% Similarity=0.779 Sum_probs=109.8
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHHHh
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFS 112 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~~~ 112 (583)
++++|+|||+|+++|||+||||+||.+|++++.++.+|+++|.+|+.. +||+|+||+|||||+|||||+|.|.+|++.+
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~~~ 79 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELLSR 79 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 579999999999999999999999999999888899999999999986 9999999999999999999999999999764
Q ss_pred hhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHhhh
Q 007960 113 TRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFR 154 (583)
Q Consensus 113 srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~F~ 154 (583)
..+|++++|.+..++.+|||+.|||.|++||++|++||
T Consensus 80 ----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 80 ----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred ----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 46899999999876678999999999999999999975
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=1.7e-27 Score=217.76 Aligned_cols=123 Identities=42% Similarity=0.596 Sum_probs=112.5
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
++++++|+|||||++.|||+||+++|+.+|+.++..+..|+..|.+||..+++|+|+||+|+|||+||++|++.+..+..
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999999999988899999999999998889999999999999999999999988876
Q ss_pred HhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHhhhhcc
Q 007960 111 FSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQG 157 (583)
Q Consensus 111 ~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~F~~~~ 157 (583)
.+ +..+++|++|++. ++.+||++.|||.|++||++||.++...
T Consensus 81 ~~---~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l 123 (127)
T smart00273 81 RN---RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRL 123 (127)
T ss_pred Hh---hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHH
Confidence 43 3479999999986 5678999999999999999999977653
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.24 E-value=5.8e-11 Score=108.55 Aligned_cols=118 Identities=27% Similarity=0.352 Sum_probs=94.1
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcc--cCCCChHHHHHHHHHHHHHHhcCChhhHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRL--NKTKNWTVALKTLILIQRLLSEGDPAYEQ 107 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL--~kt~nWiVAlKtLillHrLLReG~p~f~~ 107 (583)
++++++-|.+||+.++.+|..+++.+|...|+.+ .....++..|.+|| .+.++|.+.+|+|.+||.||+.|++.|..
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~ 79 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD 79 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH
Confidence 3688999999999999999999999999999998 55678899999999 45899999999999999999999999999
Q ss_pred HHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 108 EIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 108 El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
++..+. ..+-.+.+|.- ..+.+.+++.-||..|+-|.+-|.
T Consensus 80 ~~~~~~---~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 80 ELRDHI---DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHTH---HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 995432 24666778865 233567888899999998887664
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.12 E-value=3.5e-10 Score=101.62 Aligned_cols=112 Identities=29% Similarity=0.275 Sum_probs=92.7
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHHHh
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFS 112 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~~~ 112 (583)
+++.|.|||+++...|+.+++.+|...+.........++.+|.+||. .++|.|++|+|.|+|.|+..|++.|..|+...
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRIN-NKNPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 36789999999999999999999999998877777899999999997 56999999999999999999999999988532
Q ss_pred hhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHH
Q 007960 113 TRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER 150 (583)
Q Consensus 113 srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeR 150 (583)
. .+.++..| +.......+.+..||.++++|.+.
T Consensus 80 ~----~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 80 D----FAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred H----HHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 1 34445444 222234456789999999999864
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=98.71 E-value=9.4e-08 Score=87.89 Aligned_cols=114 Identities=25% Similarity=0.285 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKT-KNWTVALKTLILIQRLLSEGDPAYEQEIFF 111 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt-~nWiVAlKtLillHrLLReG~p~f~~El~~ 111 (583)
.++-|..|||.++.+|..+++.+|..+|++... ...++..|.+||... ++|.+++|+|+||+-||+.|++.|..++..
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~-~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNYVE-FQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 578899999999999999999999999998643 567899999999753 799999999999999999999999999854
Q ss_pred hhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHH
Q 007960 112 STRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERL 151 (583)
Q Consensus 112 ~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL 151 (583)
+.. .+-.|.+|.=- ...+-|.+.-||.=|+-|.+-|
T Consensus 81 ~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 81 NLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred hHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 321 23344555321 1223578888998777665544
No 9
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=97.91 E-value=4.9e-05 Score=69.97 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=87.5
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHHHhhhc
Q 007960 36 AIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRR 115 (583)
Q Consensus 36 AIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~~~srr 115 (583)
.|.+||+-++.||--==.++|...|+.+...+..+...|.+||. .++..|-+|+|-+|-.|++.|++.|+.++...+.
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~-~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~- 82 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLK-RSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA- 82 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-
Confidence 57899999886665555568999999987778889999999998 5778999999999999999999999999976553
Q ss_pred CCccccccccccCCCC-CCCcchHHHHHHHHHHH
Q 007960 116 GTRLLNMSDFRDTSRS-NSWDYSAFVRTYALYLD 148 (583)
Q Consensus 116 g~~~LnLs~F~D~s~~-~s~dysafVR~Ya~YLd 148 (583)
.+..+.+|+..-.+ .+++.+..||.=|+=|.
T Consensus 83 --~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 83 --QIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred --HHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 46667778764333 46788999998776444
No 10
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00011 Score=77.62 Aligned_cols=131 Identities=24% Similarity=0.264 Sum_probs=97.4
Q ss_pred HHhhhcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccC-CCChHHHHH
Q 007960 11 GAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNK-TKNWTVALK 89 (583)
Q Consensus 11 GalKD~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~k-t~nWiVAlK 89 (583)
..+|.+++--+-+ +++.++.|.-||+.+.--|.-+++-+|-.+|+.... +..++.-|.|||.. -++|.+++|
T Consensus 6 ~~l~Rqakn~v~~------y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e-~~eIm~vi~kRl~d~gknWR~VyK 78 (336)
T KOG2056|consen 6 RDLKRQAKNFIKN------YSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVE-YQEIMDVLWKRLNDSGKNWRHVYK 78 (336)
T ss_pred HHHHHHHHHHHhc------chHHHHHHHhccccccCCCchHHHHHHHHHhcCHHH-HHHHHHHHHHHHhhccchHHHHHH
Confidence 3455555443333 578999999999999999999999999999998754 46889999999986 589999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 90 TLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 90 tLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
+|.||--||.-|+..|.+++..+.- -|--|..|.-- .....|.+.-||.=++=|..-|+
T Consensus 79 aLtlleyLl~~GSErv~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~LL~ 137 (336)
T KOG2056|consen 79 ALTLLEYLLKNGSERVVDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELLSLLE 137 (336)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999988843211 11122334210 12345778889987777665554
No 11
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.58 E-value=0.06 Score=51.00 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
++..|.|||+....-++--.+=.|--...........++++|-+||. .+|..|++.+|.|+--++..+...|..|+.
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 77 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEVA 77 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 46789999999988888888887777666656667899999999997 789999999999999999999999988873
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.49 E-value=0.086 Score=49.76 Aligned_cols=79 Identities=23% Similarity=0.230 Sum_probs=68.6
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
+.++..|.|||+....-|+--.+-.|.-...........++++|-+||. .+|..|++-+|.|+--++..+...|..|+.
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 5689999999999888888888888777776666667899999999996 699999999999999999998888887773
No 13
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.42 E-value=0.082 Score=49.86 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
++..|.|||+....-|+--++-.|.-...........++.+|.+||. .+|..|++-+|.++--++..+...|..|+.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 78899999999998899888888877766655556789999999997 899999999999999999999999988873
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.31 E-value=0.084 Score=49.33 Aligned_cols=79 Identities=27% Similarity=0.262 Sum_probs=66.3
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
...++..|.|||++...-|+--.+-.|.-...........++++|.+||. .+|.-|.+-+|.|+.-++..+.+.|..|+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35789999999999988888887777777776666666889999999997 59999999999999999999999998877
No 15
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.96 E-value=0.15 Score=48.06 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
++..|.|||+....-++--.+=+|--...........++++|-+||...+|..|++-+|.|+--++..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999988888888888777766655566899999999997667999999999999999999999999888
No 16
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.91 E-value=0.14 Score=47.70 Aligned_cols=77 Identities=29% Similarity=0.264 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
++..|.|||+....-++--.+-.|.-...........++++|.+||. .+|..|++.+|.++--++..+...|..|+.
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~ 77 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVA 77 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 36789999999888888888888877776666666889999999997 799999999999999999999888887773
No 17
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.12 E-value=0.26 Score=45.65 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007960 34 EVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIF 110 (583)
Q Consensus 34 evAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~ 110 (583)
+..|.|||+....-++-.-+-+|.-...........++++|-+||. .+|..|++.+|.++--++..+.+.|..|+.
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i~ 77 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQVA 77 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHHh
Confidence 5679999998877788888888777777666667899999999997 689999999999999999999998887773
No 18
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.23 Score=52.62 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=85.9
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccC-CccHHHHHHHHHhcccC--CCChHHHHHHHHHHHHHHhcCChhh
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYS-RAYISACVNIISKRLNK--TKNWTVALKTLILIQRLLSEGDPAY 105 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~s-r~~v~~~v~aLsrRL~k--t~nWiVAlKtLillHrLLReG~p~f 105 (583)
.+++++.-|.-|||.+.--|.---+.+|--+|..- -..+..++..|..|+-+ -.+|.-++|+||+|.-||+.|...|
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~ 99 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERF 99 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 46889999999999999888888888888887751 12356778888888754 3689999999999999999999999
Q ss_pred HHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHH
Q 007960 106 EQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDE 149 (583)
Q Consensus 106 ~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLde 149 (583)
.+|..-+.-. -|-|.--+|.|.-. -|.+-.||.-.+-|.|
T Consensus 100 VqeAREh~Yd-LR~LEnYhfiDEhG---KDQGINIR~kVKeilE 139 (499)
T KOG2057|consen 100 VQEAREHAYD-LRRLENYHFIDEHG---KDQGINIRHKVKEILE 139 (499)
T ss_pred HHHHHHHHHH-HHhhhhccchhhhC---ccccccHHHHHHHHHH
Confidence 9876422110 12233346777532 4677778877665543
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=86.65 E-value=2.6 Score=46.10 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=61.3
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
...++..|.|||+...+-=+=-+|-.+--.....+..-..|+.+|.|||. +++..|++-+|-|+--+.......|+.|+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 45789999999998877555555554444434433334899999999997 89999999999999988887777777776
No 20
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=1.6e+02 Score=33.49 Aligned_cols=73 Identities=25% Similarity=0.200 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYE 106 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~ 106 (583)
+...|-|||+....-|+=-..=+|--..-...+.....+++|.|||. .++..|++=+|.||--|+..-...|.
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~-~k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLN-SKNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 46789999999877777665555555544445555788999999997 56668899999998877766544444
No 21
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.32 E-value=1.5e+02 Score=37.17 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=100.3
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCC--hhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHH
Q 007960 69 ACVNIISKRLNKTKNWTVALKTLILIQRLLSEGD--PAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALY 146 (583)
Q Consensus 69 ~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~--p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~Y 146 (583)
.++..|..|+. +-+.-|-.|.|-+.||+.+.-. ..++.|++... .+.. -|=|.+||.||.=
T Consensus 359 ~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la--------~grl--------~DkSslVRk~Ai~ 421 (1251)
T KOG0414|consen 359 ELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELA--------IGRL--------EDKSSLVRKNAIQ 421 (1251)
T ss_pred HHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHH--------hccc--------ccccHHHHHHHHH
Confidence 36778889986 8999999999999999988744 34444443221 1111 2346789999977
Q ss_pred HHHHHhhhhccCCCCCccccccchhhhh-------c--ccc--cCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHcc
Q 007960 147 LDERLEFRMQGRRGKRSMFGIDEDEEEA-------S--SAP--ACARATPVRDMKIEHLFSRIQHLQ----QVLERFLAC 211 (583)
Q Consensus 147 LdeRL~F~~~~~~~~~g~~d~~~~~~~~-------~--~~~--~~~~~~~lr~l~~e~LL~~L~~LQ----~Lldrll~c 211 (583)
|.-.+- ..||.+..-+.+--..+.++ . +.. .+...+-.+......+++..+.-+ ........|
T Consensus 422 Ll~~~L--~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~ 499 (1251)
T KOG0414|consen 422 LLSSLL--DRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNK 499 (1251)
T ss_pred HHHHHH--hcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhcccccccccc
Confidence 766543 34443110000000000000 0 000 000111122222222333333322 112222222
Q ss_pred CcC---------CCCCCc-hHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007960 212 RPT---------GSAKNN-RVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFY 281 (583)
Q Consensus 212 rp~---------g~a~~N-~~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy 281 (583)
.+. ..-..| -+-+-+++.-++|.++.-+.+.+.+-.++...|.=...|- .+-.+||
T Consensus 500 ~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV--------------~E~Idfl 565 (1251)
T KOG0414|consen 500 QEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEV--------------KEAIDFL 565 (1251)
T ss_pred chhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH--------------HHHHHHH
Confidence 211 111223 2344567777799999999999999999988775544443 4455788
Q ss_pred HHhhhcccc
Q 007960 282 GWCKTVGIA 290 (583)
Q Consensus 282 ~~Ck~l~~~ 290 (583)
-.|+..|+-
T Consensus 566 ~~c~~F~I~ 574 (1251)
T KOG0414|consen 566 VRCKQFGID 574 (1251)
T ss_pred HHHHHhCCC
Confidence 888887763
No 22
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.37 E-value=64 Score=36.20 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=58.5
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
...||..|.|||+....--+=|+|..++--.......-.-.+|.|+.++..-..| =|+-+|-++.-+++.|...|.+|+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~ev 84 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHEEV 84 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3569999999999987433445555555555544433345589999999855555 578899999999999888888777
Q ss_pred HH
Q 007960 110 FF 111 (583)
Q Consensus 110 ~~ 111 (583)
-+
T Consensus 85 gk 86 (594)
T KOG1086|consen 85 GK 86 (594)
T ss_pred HH
Confidence 43
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.70 E-value=1.2e+03 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhhccCCCCCcccc
Q 007960 141 RTYALYLDERLEFRMQGRRGKRSMFG 166 (583)
Q Consensus 141 R~Ya~YLdeRL~F~~~~~~~~~g~~d 166 (583)
+.|.+.+++.+.-.++|+.+.+..|+
T Consensus 422 pqYykLIEecISqIvlHr~~~DPdf~ 447 (1102)
T KOG1924|consen 422 PQYYKLIEECISQIVLHRTGMDPDFK 447 (1102)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46777777777755566555444333
No 24
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=27.84 E-value=2.3e+02 Score=24.70 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHH---HHhhhcc
Q 007960 231 VKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFY---GWCKTVG 288 (583)
Q Consensus 231 VkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy---~~Ck~l~ 288 (583)
|.+.=++|..+++.+-.| .++++-++++..-+.+|.+|| +|-+...
T Consensus 2 I~eme~~y~~~~~~l~~l------------e~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEEL------------EEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 345556777776666555 345677889999999999999 3444444
No 25
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=25.68 E-value=70 Score=25.49 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=26.2
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007960 246 GILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIA 290 (583)
Q Consensus 246 ~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~ 290 (583)
+.-+..||+|+..||-+.|.+-... +=..|+.+|+-
T Consensus 7 ~~~L~~~fhlp~~eAA~~Lgv~~T~---------LKr~CR~~GI~ 42 (52)
T PF02042_consen 7 LEDLSQYFHLPIKEAAKELGVSVTT---------LKRRCRRLGIP 42 (52)
T ss_pred HHHHHHHhCCCHHHHHHHhCCCHHH---------HHHHHHHcCCC
Confidence 3456789999999999988763333 33468888864
No 26
>PF14767 RPA_interact_M: Replication protein A interacting middle
Probab=25.30 E-value=90 Score=27.12 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=19.3
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHh
Q 007960 534 QMSDLEKK-QKLLVEEQLMWQQYAR 557 (583)
Q Consensus 534 qma~m~~~-q~ll~~eq~~w~q~~~ 557 (583)
.|+.|+.= |.|+.+||.+|++|.+
T Consensus 45 iL~~mEei~~El~~eE~~ii~eyE~ 69 (83)
T PF14767_consen 45 ILLVMEEIQQELIREEQSIIEEYEK 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777774 5599999999999974
No 27
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=24.25 E-value=2.6e+02 Score=35.08 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhc
Q 007960 222 VVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQY--------------DELDSFYGWCKTV 287 (583)
Q Consensus 222 ~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~--------------e~L~~Fy~~Ck~l 287 (583)
+-+.+|....+|+.-||+.|-+.| -.+|+-+-.++++ ++|-+||.+. .+...|+..|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGDlL----l~~FsGe~ae~L~--~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGDLL----LDQFSGENAERLK--KTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHHHH----HHHcCchHHHHHH--HHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 344566666666666555555544 3345554455443 4566665533 3444577655555
Q ss_pred cccccccCCC
Q 007960 288 GIARSSEYPE 297 (583)
Q Consensus 288 ~~~r~~eiP~ 297 (583)
-++|..++|+
T Consensus 521 p~cRRL~lkd 530 (1167)
T KOG3520|consen 521 PVCRRLGLKD 530 (1167)
T ss_pred hHHHhhcchH
Confidence 5555555443
No 28
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.31 E-value=59 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007960 261 VKVYDIFCRVSKQYDELDSFYGWCK 285 (583)
Q Consensus 261 ~kaleiykrf~kQ~e~L~~Fy~~Ck 285 (583)
.+|=.||.||...+...+.+..+||
T Consensus 4 dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3555789999999999999888886
No 29
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=21.85 E-value=1.5e+02 Score=28.00 Aligned_cols=23 Identities=9% Similarity=0.488 Sum_probs=16.7
Q ss_pred cCCCCCCCc-----hHHHHH----HHHHHhhh
Q 007960 294 EYPEVERIT-----YKKLEL----MDDFIRDK 316 (583)
Q Consensus 294 eiP~L~~~P-----~~fL~~----LEEylrd~ 316 (583)
++|.|+.-| +.+++. ||+||++-
T Consensus 90 ~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~L 121 (140)
T cd06895 90 RLPSLPALPDILVSEEQLDSRKKQLENYLQNL 121 (140)
T ss_pred cCCCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 577777555 556665 99999975
No 30
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=21.14 E-value=1.6e+02 Score=32.10 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHHHHHH----HH---HHHHHhhhcccc----cc--ccCCCCCCCchHHHHHHHH
Q 007960 245 LGILIDRFMELEVPDSVKVYDIFCRVSKQYDE----LD---SFYGWCKTVGIA----RS--SEYPEVERITYKKLELMDD 311 (583)
Q Consensus 245 l~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~----L~---~Fy~~Ck~l~~~----r~--~eiP~L~~~P~~fL~~LEE 311 (583)
+.+++|.| +--++.=+..+|||.+|.+. |. .|+..|-+-.+. +. .+.|+ -.+.|..|||
T Consensus 277 lRq~lE~f----KLk~IQd~N~~kR~irqae~nhYaLyk~y~FL~~cg~~dILL~~~k~e~~~~pe----~~~vl~vLee 348 (353)
T PF15053_consen 277 LRQILENF----KLKVIQDMNNFKRFIRQAEMNHYALYKCYLFLKNCGNGDILLKIVKVEHDEMPE----AKNVLNVLEE 348 (353)
T ss_pred HHHHHHhh----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCCchHHHHHHHHhhhccChH----HHHHHHHHHH
Confidence 45567766 44666667889999998764 33 477777665443 22 12333 3477889999
Q ss_pred HHhhh
Q 007960 312 FIRDK 316 (583)
Q Consensus 312 ylrd~ 316 (583)
|++++
T Consensus 349 ~~~e~ 353 (353)
T PF15053_consen 349 FMKEA 353 (353)
T ss_pred HhhcC
Confidence 99873
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.03 E-value=75 Score=36.25 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q 007960 191 IEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRV 270 (583)
Q Consensus 191 ~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf 270 (583)
.|+.|..+.-..+++.|-+.|.|...+=...+. ||+-+.+-.+|-.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-----------------------------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-----------------------------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-----------------------------HHHHhhHHHHHHHHHHHH
Confidence 356777788888888999998885432111111 344445555555666666
Q ss_pred HHHHHHHHHHHHHhh
Q 007960 271 SKQYDELDSFYGWCK 285 (583)
Q Consensus 271 ~kQ~e~L~~Fy~~Ck 285 (583)
.--+-++.+|..++|
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 666666666555544
No 32
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=20.76 E-value=58 Score=26.42 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=18.8
Q ss_pred ccccccCCCCCchh---chHHHHHHHHHHHHHHHHH
Q 007960 520 PFAASCAVAPPPFV---QMSDLEKKQKLLVEEQLMW 552 (583)
Q Consensus 520 pFaaS~~v~pp~~v---qma~m~~~q~ll~~eq~~w 552 (583)
=||.|..+|-|+.| |+..|. ...|+-|
T Consensus 17 vfassmq~p~pasvtttqi~ams------t~~qq~w 46 (65)
T PF10880_consen 17 VFASSMQMPDPASVTTTQIQAMS------TDDQQAW 46 (65)
T ss_pred HhhhcccCCCCcceeHHHHHHhc------chhHHHH
Confidence 48899999999988 444443 3555666
No 33
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=20.20 E-value=1.2e+02 Score=29.32 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHhhhcC
Q 007960 86 VALKTLILIQRLLSEGDPAYEQEIFFSTRRG 116 (583)
Q Consensus 86 VAlKtLillHrLLReG~p~f~~El~~~srrg 116 (583)
-+|+=+++=||||..+.++|+++++...+.|
T Consensus 98 nayrHm~iE~rLL~~~g~~~r~~Ii~LK~~G 128 (152)
T PF14091_consen 98 NAYRHMLIEHRLLELHGPSFREEIIELKESG 128 (152)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Confidence 3789999999999999999999998766544
No 34
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=20.01 E-value=54 Score=28.27 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=8.2
Q ss_pred HHHHHHhcC-Chh
Q 007960 93 LIQRLLSEG-DPA 104 (583)
Q Consensus 93 llHrLLReG-~p~ 104 (583)
++||||++| .|.
T Consensus 58 ILHrLLQng~SP~ 70 (78)
T PF08832_consen 58 ILHRLLQNGNSPV 70 (78)
T ss_dssp HHHHHHHCS----
T ss_pred HHHHHHhcCCCHH
Confidence 589999999 443
Done!