Query 007960
Match_columns 583
No_of_seqs 223 out of 485
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 14:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 5.2E-74 1.8E-78 592.9 29.2 283 1-315 3-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 1.2E-67 4.1E-72 547.7 25.3 284 1-316 8-292 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 1.8E-65 6.2E-70 522.4 24.8 261 1-292 8-269 (271)
4 1eyh_A Epsin; superhelix of he 99.3 6.7E-12 2.3E-16 116.7 11.9 117 29-152 2-121 (144)
5 1inz_A EPS15-interacting porte 99.3 1.8E-11 6.2E-16 114.3 12.0 117 29-152 20-139 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 98.9 1.2E-08 4.2E-13 97.7 13.0 117 29-152 31-151 (176)
7 3onk_A Epsin-3, ENT3; helix, p 98.9 1.3E-08 4.4E-13 95.2 11.2 120 28-152 7-128 (150)
8 1vdy_A Hypothetical protein (R 98.1 2.9E-05 9.9E-10 71.7 11.8 115 33-151 12-128 (140)
9 1elk_A Target of MYB1; superhe 95.7 0.037 1.3E-06 51.6 8.9 79 31-109 15-93 (157)
10 3ldz_A STAM-1, signal transduc 95.6 0.045 1.5E-06 50.0 9.2 78 31-109 4-81 (140)
11 1x5b_A Signal transducing adap 95.6 0.042 1.4E-06 51.6 9.2 78 31-109 14-91 (163)
12 3g2s_A C-terminal fragment of 95.6 0.054 1.9E-06 50.2 9.7 80 29-109 8-87 (149)
13 3rru_A TOM1L1 protein; structu 95.4 0.053 1.8E-06 50.5 8.8 79 31-109 15-93 (152)
14 3zyq_A Hepatocyte growth facto 95.2 0.054 1.8E-06 53.3 8.7 80 29-109 5-84 (226)
15 1juq_A ADP-ribosylation factor 95.2 0.045 1.6E-06 51.8 7.8 79 30-109 11-89 (171)
16 1mhq_A ADP-ribosylation factor 95.1 0.054 1.8E-06 50.1 8.0 76 33-109 2-77 (148)
17 1dvp_A HRS, hepatocyte growth 94.2 0.11 3.8E-06 50.6 8.2 77 32-109 5-81 (220)
18 3bej_E Nuclear receptor coacti 52.8 5.1 0.00018 26.1 1.2 12 93-104 14-25 (26)
19 2prg_C Nuclear receptor coacti 26.3 22 0.00076 29.8 1.2 12 93-104 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=5.2e-74 Score=592.91 Aligned_cols=283 Identities=20% Similarity=0.365 Sum_probs=242.7
Q ss_pred CChhhHHHHHHHhh-hcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhccc
Q 007960 1 MAPSKFKKAIGAVK-DKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLN 79 (583)
Q Consensus 1 m~~~~~rka~GalK-D~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~ 79 (583)
|++++||+++||+| |+|++ ++++||+|||+|+++|||+||||+||.+|+.+++++++|+|+|.+| .
T Consensus 3 ~~~~~~~~~~~a~k~~~~~~------------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R-~ 69 (299)
T 1hx8_A 3 MAGQTINDRLLAARHSLAGQ------------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER-S 69 (299)
T ss_dssp -------------------C------------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH-H
T ss_pred CchHHHHHHHHHHhhccchh------------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhh-c
Confidence 88899999999999 88864 5777999999999999999999999999999999999999999999 5
Q ss_pred CCCChHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCC-----------CCCCcchHHHHHHHHHHH
Q 007960 80 KTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSR-----------SNSWDYSAFVRTYALYLD 148 (583)
Q Consensus 80 kt~nWiVAlKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~-----------~~s~dysafVR~Ya~YLd 148 (583)
+++||+|+||+|||||||||||||.|++++.+ + +++|+|++|+|+++ +.+||||+|||+|++||+
T Consensus 70 ~~~~w~va~K~LivlH~llreG~~~~~~~l~~--~--~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~ 145 (299)
T 1hx8_A 70 QNANWVVVYKSLITTHHLMAYGNERFMQYLAS--S--NSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN 145 (299)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH--T--TCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHh--C--CcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence 79999999999999999999999999999943 2 47999999999864 356899999999999999
Q ss_pred HHHh-hhhccCCCCCccccccchhhhhcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhH
Q 007960 149 ERLE-FRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVAL 227 (583)
Q Consensus 149 eRL~-F~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~lr~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL 227 (583)
+|+. ||.+ ++|++... .+.+.+++++|++++||++++.||+|||++++|++.+.+.+|+|+++||
T Consensus 146 ~r~~~f~~~-------~~d~~~~~-------~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al 211 (299)
T 1hx8_A 146 EKSLSYRAM-------AFDFCKVK-------RGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSF 211 (299)
T ss_dssp HHHHHHHHH-------SSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHH
T ss_pred HHHHHHHHh-------CCCccccc-------cCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHH
Confidence 9965 9998 45554321 1224678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHH
Q 007960 228 YPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLE 307 (583)
Q Consensus 228 ~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~ 307 (583)
++||+||++||+++|+||++|||+||||++.||++||+||+||.+|+++|++||++||+++|++ ++||+|+++|++||+
T Consensus 212 ~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~ 290 (299)
T 1hx8_A 212 MLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLD 290 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999977 899999999999999
Q ss_pred HHHHHHhh
Q 007960 308 LMDDFIRD 315 (583)
Q Consensus 308 ~LEEylrd 315 (583)
+|||||++
T Consensus 291 ~Lee~l~~ 298 (299)
T 1hx8_A 291 ALEQHLAT 298 (299)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999996
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-67 Score=547.73 Aligned_cols=284 Identities=20% Similarity=0.348 Sum_probs=237.4
Q ss_pred CChhhHHHHHHHhhhcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccC
Q 007960 1 MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNK 80 (583)
Q Consensus 1 m~~~~~rka~GalKD~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~k 80 (583)
|++++++.-+.|.|- .| ..+++++||+|||+|+++|||+||||+||.+|+.+++++.+|+++|.+||+
T Consensus 8 ~~~~~~~~~~~~~~~-------~~----~~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~- 75 (310)
T 3zym_A 8 MSGQSLTDRITAAQH-------SV----TGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT- 75 (310)
T ss_dssp ----CHHHHHHHHHH-------CC----HHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-
T ss_pred cccccHHHHHHHHHh-------cc----cccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-
Confidence 677777777777665 22 237899999999999999999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh-hhhccCC
Q 007960 81 TKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE-FRMQGRR 159 (583)
Q Consensus 81 t~nWiVAlKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~-F~~~~~~ 159 (583)
++||+|+||+|||||||||||||.|.+++. +++ ++|+|++|+|++++.+|||++|||.|++||++|+. ||.++.+
T Consensus 76 ~~~w~vv~KaLivlH~llreG~~~~l~~~~---~~~-~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d 151 (310)
T 3zym_A 76 NSSWVVVFKSLITTHHLMVYGNERFIQYLA---SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD 151 (310)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH---HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCchHHHHHHHHHHHHHHhcCCHHHHHHHH---hCC-CeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999988773 233 69999999998776779999999999999999999 9998543
Q ss_pred CCCccccccchhhhhcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHH
Q 007960 160 GKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYY 239 (583)
Q Consensus 160 ~~~g~~d~~~~~~~~~~~~~~~~~~~lr~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~ 239 (583)
+...+ .+..+++++|++++||++++.||+||+++++|+|.+.+.+|+|+++||++||+|||+||+
T Consensus 152 -------~~~~~--------~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~ 216 (310)
T 3zym_A 152 -------FTKVK--------RGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFA 216 (310)
T ss_dssp -------TTTSC--------CSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccc--------CCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHH
Confidence 33211 123457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHHHHHHHHhhh
Q 007960 240 DITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDK 316 (583)
Q Consensus 240 ~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~~LEEylrd~ 316 (583)
++|+||++|||+||||++.||.+||+||+||.+|+++|++||++||++|+.+. +||+|+++|++++..++.-|.+-
T Consensus 217 ~inegii~lLe~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~ev 292 (310)
T 3zym_A 217 AYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEGV 292 (310)
T ss_dssp HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997665 99999999999999999988764
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=1.8e-65 Score=522.37 Aligned_cols=261 Identities=22% Similarity=0.377 Sum_probs=233.8
Q ss_pred CChhhHHHHHHHhhhcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccC
Q 007960 1 MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNK 80 (583)
Q Consensus 1 m~~~~~rka~GalKD~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~k 80 (583)
|++++++.-+.+.|- .|. .+++++||+|||+|+++|||+||||+||.+|+.+++++.+|+++|.+|++
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~----~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~- 75 (271)
T 3zyl_A 8 MSGQSLTDRITAAQH-------SVT----GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT- 75 (271)
T ss_dssp ----CHHHHHHHHHH-------HHH----HHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-
T ss_pred cccccHHHHHHHHHh-------ccc----chHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-
Confidence 677777777777765 232 36899999999999999999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh-hhhccCC
Q 007960 81 TKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE-FRMQGRR 159 (583)
Q Consensus 81 t~nWiVAlKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~-F~~~~~~ 159 (583)
++||+|+||+|||||||||||||.|.+++. +++ ++|+|++|+|++++.+|||++|||.|++||++|+. ||.++.+
T Consensus 76 ~~~w~v~~KaLivlH~llreG~~~~l~~~~---~~~-~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d 151 (271)
T 3zyl_A 76 NSSWVVVFKSLITTHHLMVYGNERFIQYLA---SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD 151 (271)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH---HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCchHHHHHHHHHHHHHHhcCCHHHHHHHH---hCC-CeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998873 334 69999999998777789999999999999999998 9998543
Q ss_pred CCCccccccchhhhhcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHH
Q 007960 160 GKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYY 239 (583)
Q Consensus 160 ~~~g~~d~~~~~~~~~~~~~~~~~~~lr~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~ 239 (583)
++..+ .+..+++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+
T Consensus 152 -------~~~~k--------~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~ 216 (271)
T 3zyl_A 152 -------FTKVK--------RGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFA 216 (271)
T ss_dssp -------TTTSC--------CSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccC--------CCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHH
Confidence 33211 123467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 007960 240 DITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARS 292 (583)
Q Consensus 240 ~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~ 292 (583)
++|+||+||||+||||++.||++||+||+||.+|+++|++||++||++|++|.
T Consensus 217 ~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 217 AYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.33 E-value=6.7e-12 Score=116.70 Aligned_cols=117 Identities=26% Similarity=0.352 Sum_probs=99.2
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHhcCChhhHH
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKT-KNWTVALKTLILIQRLLSEGDPAYEQ 107 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt-~nWiVAlKtLillHrLLReG~p~f~~ 107 (583)
.+++.++.|..|||++..+|+.+++.+|..+|+.. ..+..++..|.+||... ++|.+++|+|+|||-||+.|++.|..
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 46899999999999999999999999999999985 44678899999999742 58999999999999999999999998
Q ss_pred HHHHhhhcCCccccccccc--cCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 108 EIFFSTRRGTRLLNMSDFR--DTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 108 El~~~srrg~~~LnLs~F~--D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
++..+. ..+..|.+|. | ..+.|.+..||.+|++|.+-|.
T Consensus 81 ~~~~~~---~~i~~L~~F~y~d---~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 81 QCKENM---YAVQTLKDFQYVD---RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHTH---HHHHGGGGCCCBC---TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---HHHhhhccceeeC---CCccchHHHHHHHHHHHHHHHC
Confidence 886432 1366777773 4 2457899999999999987665
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.28 E-value=1.8e-11 Score=114.29 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=99.1
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHhcCChhhHH
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKT-KNWTVALKTLILIQRLLSEGDPAYEQ 107 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt-~nWiVAlKtLillHrLLReG~p~f~~ 107 (583)
.+++.++.|..||+++..+|+.+++.+|..+|++. ..+..++..|.+||... ++|.+++|+|+|||-||+.|.+.|..
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~ 98 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 98 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHH
Confidence 45899999999999999999999999999999986 44678999999999842 69999999999999999999999998
Q ss_pred HHHHhhhcCCcccccccc--ccCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 108 EIFFSTRRGTRLLNMSDF--RDTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 108 El~~~srrg~~~LnLs~F--~D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
++..+. ..+..|.+| .| ..+.|.+..||.+|++|.+-|.
T Consensus 99 ~~r~~~---~~I~~L~~F~y~d---~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 99 QCKENM---YAVQTLKDFQYVD---RDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHTH---HHHHHHHHCCCCC---SSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhH---HHHHhhcceeeeC---CCCcCchHHHHHHHHHHHHHhC
Confidence 886432 135566765 44 2457899999999999998765
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=98.90 E-value=1.2e-08 Score=97.66 Aligned_cols=117 Identities=20% Similarity=0.278 Sum_probs=96.7
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcc-cC-CCChHHHHHHHHHHHHHHhcCChhhH
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRL-NK-TKNWTVALKTLILIQRLLSEGDPAYE 106 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL-~k-t~nWiVAlKtLillHrLLReG~p~f~ 106 (583)
.+++.++.|..|||.+..+|..+++.+|..+|+.... ...++..|.+|| .. .++|.+++|+|+||+-||+.|+..|.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~-~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv 109 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQ-FPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVV 109 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTT-HHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhh-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHH
Confidence 4689999999999999999999999999999999754 578999999996 42 48999999999999999999999999
Q ss_pred HHHHHhhhcCCcccccccc--ccCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 107 QEIFFSTRRGTRLLNMSDF--RDTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 107 ~El~~~srrg~~~LnLs~F--~D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
.++..+.. .+-.|.+| .|. .+.|.+..||..|+.|.+-|.
T Consensus 110 ~~~r~~i~---~I~~L~~F~y~D~---~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 110 TSAREHIY---DLRSLENYHFVDE---HGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHTHH---HHHGGGGCCCBCT---TSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHH---HHHhhccCeeECC---CCCChHHHHHHHHHHHHHHHC
Confidence 88843221 12345666 332 357899999999999987765
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=98.85 E-value=1.3e-08 Score=95.23 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=95.9
Q ss_pred CCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCC--CChHHHHHHHHHHHHHHhcCChhh
Q 007960 28 NSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKT--KNWTVALKTLILIQRLLSEGDPAY 105 (583)
Q Consensus 28 ~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt--~nWiVAlKtLillHrLLReG~p~f 105 (583)
..+++.++.|..|||.+..+|..+++.+|..+|+.... ...++..|.+||... ++|.+++|+|+||+-||+.|+..|
T Consensus 7 ~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~-~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~v 85 (150)
T 3onk_A 7 PNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFRE-REEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERF 85 (150)
T ss_dssp -CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHH-HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 35789999999999999999999999999999997643 467899999999743 589999999999999999999999
Q ss_pred HHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh
Q 007960 106 EQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE 152 (583)
Q Consensus 106 ~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~ 152 (583)
..++..+.. .+-.|.+|.=. ...+-|.+.-||..|+.|.+-|.
T Consensus 86 v~~~r~~~~---~i~~L~~F~~~-d~~G~D~G~~VR~kak~l~~LL~ 128 (150)
T 3onk_A 86 IDDTRNSIN---LIRILETFHYI-DSQGRDQGINVRTRVKALIELLS 128 (150)
T ss_dssp HHHHHTTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHhhhccccc-CCCCCchHHHHHHHHHHHHHHHc
Confidence 998753321 12235555321 02346899999999999987665
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.06 E-value=2.9e-05 Score=71.74 Aligned_cols=115 Identities=20% Similarity=0.173 Sum_probs=92.8
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCcc-HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAY-ISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFF 111 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~-v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El~~ 111 (583)
-...|.+||+.++.||--==..+|-..|+.+... +..++..|.+||. .++|.|.+|+|-+|-.|++.|++.|..++..
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc-CCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 3567899999999877777778999999987643 5788999999997 5789999999999999999999999999976
Q ss_pred hhhcCCccccccccccCCCC-CCCcchHHHHHHHHHHHHHH
Q 007960 112 STRRGTRLLNMSDFRDTSRS-NSWDYSAFVRTYALYLDERL 151 (583)
Q Consensus 112 ~srrg~~~LnLs~F~D~s~~-~s~dysafVR~Ya~YLdeRL 151 (583)
+.. .|-.+.+|..-..+ .+.+.+..||.-|+=|.+-|
T Consensus 91 ~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 542 35567777654222 46789999999997776544
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.68 E-value=0.037 Score=51.59 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=69.0
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
+.++..|.|||+....-|+--.+-+|.-...........++++|.+||...+|..|++-+|.|+--++..+.+.|..|+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3799999999999888888888888777766666667899999999997568999999999999999999999998877
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.65 E-value=0.045 Score=50.04 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=69.3
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
..++..|.|||+....-++--.+-+|.-...........++++|.+||. .+|..|++-+|.++.-++..+.+.|..|+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3578999999999988889889888888877776667899999999997 68999999999999999999999998777
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.64 E-value=0.042 Score=51.61 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=68.1
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
..++..|.|||+....-|+--.+-+|.-...........++++|.+||. .+|..|++-+|.|+--++..+.+.|..|+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4689999999999888888888888887777666667899999999997 78999999999999999999888888766
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.62 E-value=0.054 Score=50.22 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHH
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQE 108 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~E 108 (583)
....++..|.|||+....-|+--.+-+|--...........++++|.+||. .+|..|++-+|.|+.-++..+.+.|..|
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 346799999999999998888888888888877766667889999999997 8999999999999999999999999887
Q ss_pred H
Q 007960 109 I 109 (583)
Q Consensus 109 l 109 (583)
+
T Consensus 87 i 87 (149)
T 3g2s_A 87 V 87 (149)
T ss_dssp H
T ss_pred H
Confidence 7
No 13
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.38 E-value=0.053 Score=50.49 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=69.6
Q ss_pred chHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 31 SDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 31 ~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
+.++..|.|||+....-|+--.+-+|--...........++++|.+||....|..|++-+|.|+--++..+...|..|+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5799999999999998888888888777766666667899999999997557999999999999999999999999888
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.19 E-value=0.054 Score=53.33 Aligned_cols=80 Identities=24% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHH
Q 007960 29 SLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQE 108 (583)
Q Consensus 29 ~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~E 108 (583)
..+.++..|.|||+....-|+--.+-+|--...........++++|.+||. .+|..|++-+|.|+--++..+...|..|
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 346899999999999988899888888877776666666889999999997 8999999999999999999988888877
Q ss_pred H
Q 007960 109 I 109 (583)
Q Consensus 109 l 109 (583)
+
T Consensus 84 i 84 (226)
T 3zyq_A 84 V 84 (226)
T ss_dssp H
T ss_pred h
Confidence 6
No 15
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.18 E-value=0.045 Score=51.78 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred CchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 30 LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 30 ~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
.+.++..|.|||+....-++--.+-+|.-...........++++|.+||. .+|..|++-+|.|+--++..+...|..|+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 35699999999999888888888888888777766667889999999997 78999999999999999999888888777
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.14 E-value=0.054 Score=50.11 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 33 LEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 33 LevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
++..|.|||+....-|+--.+-.|.-...........++++|.+||. .+|..|++-+|.|+--++..+.+.|..|+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 78899999999888888888888877776666556889999999996 89999999999999999999999998877
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.24 E-value=0.11 Score=50.64 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=67.8
Q ss_pred hHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhcCChhhHHHH
Q 007960 32 DLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEI 109 (583)
Q Consensus 32 dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVAlKtLillHrLLReG~p~f~~El 109 (583)
.++..|.|||+....-|+-..+-+|.-...........++++|.+||. .+|..|++-+|.|+--++..+.+.|..|+
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 489999999999888888888888888777766667899999999997 79999999999999999999888887766
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=52.82 E-value=5.1 Score=26.11 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=10.1
Q ss_pred HHHHHHhcCChh
Q 007960 93 LIQRLLSEGDPA 104 (583)
Q Consensus 93 llHrLLReG~p~ 104 (583)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999774
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=26.27 E-value=22 Score=29.83 Aligned_cols=12 Identities=50% Similarity=1.085 Sum_probs=10.3
Q ss_pred HHHHHHhcCChh
Q 007960 93 LIQRLLSEGDPA 104 (583)
Q Consensus 93 llHrLLReG~p~ 104 (583)
++||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999775
Done!