Citrus Sinensis ID: 007961

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---

MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRKKADLSRTSTFSRPSSFKDPPSRTSSLRKPIDLKPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGGSESTNVPKTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSDALRDLEIL

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEccEEEEEEcccccccccHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHcEEccHHHHHHHHHccccHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHcccccEEEEcccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccc

ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHEEEEEccHHHHEEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEcccEEEEEcHHHHHHccHHHHHHHHHHccccccccEEEEEEEccHHHEHEEEEEEEcHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHccccEEEEEccEEEEEcccccHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccHccccccccEEEc

meppkgflASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIiggalygflspifatfdavgegktndifhcfydgtwstikhsfTIVRDFKDVCFHSYFSLMDDlrqkqapdgkyYEIRLLYIpgaiiagglgvliDVPVISVVALCKSPYMLFKGWHRLFHDLigregpfleTICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYdeysndildmpegscfprpqyrkkadlsrtstfsrpssfkdppsrtsslrkpidlkpLELLERLFKECQRHGEIWVSEGLItakdiedaksnsgsqvvsiGLPAYCLLQALLRSAmanspgillsdsvteitssnrpkdvffdwffnPFLIIKEQIKAENLTEAEEDYLSKLVLFCGnigrlkdlnvsppeseRKRAELGALARRLQGITksvsryptfrRQFDDLVKTLTEDLakknggsestnvpktmqKSNSALARFQKSFKRLtssnngryeesqsqsdALRDLEIL

MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRKKadlsrtstfsrpssfkdppsrtsslrkpidlkpLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGrlkdlnvsppesERKRAELGALARRlqgitksvsryptfrrQFDDLVKTLTEDLakknggsestnvpktmqksNSALARFQKSFKrltssnngryeesqsqsdalrdleil

MEPPKGFLASLWSFICFLPYFigllllgiikgiiFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRllyipgaiiagglgvliDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRKKADLsrtstfsrpssfKDPPSRTSSLRKPIDLKPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGGSESTNVPKTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSDALRDLEIL

******FLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMP*******************************************LKPLELLERLFKECQRHGEIWVSEGLITAKDIE*******SQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQI*************SKLVLFCGNIGRLKDL*******************RLQGITKSVSRYPTFRRQFDDLVKT**************************************************************

***PKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLR********YYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPR*************************************KPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIG*************RKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTE******************************************************DLEIL

MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYR**************************LRKPIDLKPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNV*********AELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGGSESTNVPKTMQKSNSALARFQKSFKRLTSS***************RDLEIL

*EPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYR**************************LRKPIDLKPLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKN**********************************************LR***I*

iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		583	2.2.26 [Sep-21-2011]
Q8GUM4		588	Uncharacterized membrane	no	no	0.987	0.979	0.636	0.0

>sp\|Q8GUM4\|Y3739_ARATH Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2	Back alignment and function desciption

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/595 (63%), Positives = 468/595 (78%), Gaps = 19/595 (3%)

Query: 1   MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVL 60
           MEPP GF ASL+ F+ FLPYFIGLL LG IKGI+ CP++CL++TIGNSA+IL LLP H++
Sbjct: 1   MEPPIGFRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIV 60

Query: 61  WTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVG 120
           WT+Y I+ AKQ+GP+LK+  C+C+P  +ILWP+V I  S++GGALYGF SPIFATFDAVG
Sbjct: 61  WTFYSIVSAKQVGPILKIFLCLCLPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAVG 120

Query: 121 EGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLL 180
           EGK    FHCFYDGTWST++ SFT+VRDFKDVCFHSYFSLMD+L+Q   PD KYYEIRLL
Sbjct: 121 EGKPYQFFHCFYDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQ-SCPDRKYYEIRLL 179

Query: 181 YIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAG 240
            +PGA++   LG+L+D PVIS+VA+CKSPYMLFKGWHRLFHDLIGREGPFLET+CVP+AG
Sbjct: 180 QLPGALVVSVLGILVDPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAG 239

Query: 241 LAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDIL 300
           LAI+LWPLAV GAV+GS+++SIFLGAYAGVV YQESS ++GL YI+A++SIYDEYS DIL
Sbjct: 240 LAILLWPLAVTGAVIGSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDIL 299

Query: 301 DMPEGSCFPRPQYRKKADLSRTSTFSRP----SSFKDPPS-RTSSLRKP-IDLKPLELLE 354
           D+PEGSCFPRP+YR+K +    + FS P     S K+  S R  S+R P ID+KPL+LL 
Sbjct: 300 DLPEGSCFPRPKYRRKDE--EPTPFSGPVPRLGSVKNASSMRGGSVRVPMIDIKPLDLLN 357

Query: 355 RLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGI 414
            LF EC+R+GE+  ++GLI +KDIE+A+S+ GSQV+S+GLPAY LL  +LRS  ANS G+
Sbjct: 358 ELFVECRRYGEVLATKGLINSKDIEEARSSKGSQVISVGLPAYGLLYEILRSVKANSSGL 417

Query: 415 LLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRL 474
           LLSD VTEIT+ NRPKDVFFDWF NPFLI+KEQ+KA NL+E EE+YL +LVL  G+  RL
Sbjct: 418 LLSDGVTEITTMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEEYLGRLVLLFGDPERL 477

Query: 475 KDLN---VSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNG 531
           K  N    SPP +ERKRAEL A ARR+QG+TK+VSRYPTFRR F  LVK L+EDL  K+ 
Sbjct: 478 KSSNAISASPPLTERKRAELDAFARRMQGLTKTVSRYPTFRRHFVALVKKLSEDLDLKDN 537

Query: 532 GS---ESTNVPKTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSDALRDLEIL 583
            S   ES   P    K  S +   Q+SF+R  S N     + +SQ    R+++I+
Sbjct: 538 NSAKDESITEPPAPVKIISRIFS-QRSFRRKGSVNG---SDQESQKGVSRNVDIV 588

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		583
224055641		586	predicted protein [Populus trichocarpa]	0.986	0.981	0.7	0.0
255572012		582	conserved hypothetical protein [Ricinus	0.987	0.989	0.701	0.0
297805610		586	hypothetical protein ARALYDRAFT_493918 [	0.984	0.979	0.668	0.0
30693640		586	uncharacterized protein [Arabidopsis tha	0.984	0.979	0.660	0.0
225452236		584	PREDICTED: uncharacterized membrane prot	0.982	0.981	0.690	0.0
9758091		595	unnamed protein product [Arabidopsis tha	0.984	0.964	0.649	0.0
449455894		589	PREDICTED: uncharacterized membrane prot	0.991	0.981	0.658	0.0
449492897		589	PREDICTED: uncharacterized membrane prot	0.991	0.981	0.656	0.0
30688768		588	uncharacterized protein [Arabidopsis tha	0.987	0.979	0.636	0.0
27311557		588	Unknown protein [Arabidopsis thaliana]	0.987	0.979	0.636	0.0

>gi\|224055641\|ref\|XP_002298580.1\| predicted protein [Populus trichocarpa] gi\|222845838\|gb\|EEE83385.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/590 (70%), Positives = 488/590 (82%), Gaps = 15/590 (2%)

Query: 1   MEPPKGFLASLWSFICFLPYFIGLLLLGIIKGIIFCPVICLMMTIGNSAIILGLLPAHVL 60
           MEPPK  L+SLW+FI FLP+F GLL+LG +KG++FCP++CL+MTIGNSAIILGL P H++
Sbjct: 1   MEPPKEILSSLWNFIIFLPFFFGLLVLGTVKGVVFCPLVCLIMTIGNSAIILGLWPLHIV 60

Query: 61  WTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVG 120
            TYY ILR K +GPVLK++ CIC+P  LILW V+ I  SIIGGALYG LSPIFATFDAVG
Sbjct: 61  KTYYSILRTKHIGPVLKIVLCICLPATLILWLVLGIVGSIIGGALYGLLSPIFATFDAVG 120

Query: 121 EGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLL 180
           E KTN ++HCFYDGTW T+K SFT+VRDF DVC+HSYFSL+DDLRQ  APD KYYEIRLL
Sbjct: 121 ERKTNMLYHCFYDGTWDTVKGSFTVVRDFGDVCYHSYFSLLDDLRQG-APDVKYYEIRLL 179

Query: 181 YIPGAIIAGGLGVLIDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAG 240
            +PGAIIA  LG++ D P++S++A+CKSPYMLFKGWHRLFHDLIGREGPFLETICVP AG
Sbjct: 180 PLPGAIIAASLGIVFDFPLVSLIAICKSPYMLFKGWHRLFHDLIGREGPFLETICVPFAG 239

Query: 241 LAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDIL 300
           LAI+LWPLAVVGAVLGSMV+SIFLGAYAGVVVYQE S WFGL YI+A+L+IYDEYSNDIL
Sbjct: 240 LAILLWPLAVVGAVLGSMVSSIFLGAYAGVVVYQE-SFWFGLCYIVASLAIYDEYSNDIL 298

Query: 301 DMPEGSCFPRPQYRKKADL----SRTSTFSRPSSFKDPPSRTSSLRKP-IDLKPLELLER 355
           DMPEGSCFPRP+Y+K   L    SR ++FS  +S ++P SR  S   P +DLKPLELL+R
Sbjct: 299 DMPEGSCFPRPKYQKDPKLTKTTSRAASFSGSTSVRNPLSRGGSFNHPMVDLKPLELLDR 358

Query: 356 LFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGIL 415
           +FKECQ HGEI+VSEGLIT +DI+DAKS  GS+V+SIGLPAYC+LQALLRS  ANS GIL
Sbjct: 359 IFKECQHHGEIFVSEGLITQQDIDDAKSGKGSRVISIGLPAYCILQALLRSVKANSVGIL 418

Query: 416 LSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLK 475
           LSD+VTEITS+NRPKD F++WF NPFLIIK+QIKAENL+E EE YL +LVL  G+  +LK
Sbjct: 419 LSDNVTEITSTNRPKDTFYEWFLNPFLIIKDQIKAENLSEEEEGYLGRLVLLNGDPTKLK 478

Query: 476 DLNVS-PPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGGSE 534
            LN   PPESERKRAEL ALARRLQGITKSVSRYPT RR FD LVK L+E+LAKKNG ++
Sbjct: 479 SLNSGPPPESERKRAELDALARRLQGITKSVSRYPTSRRNFDHLVKNLSENLAKKNGETK 538

Query: 535 STNVPKTMQKSNSALARF--QKSFKRLTSSNNGRYEESQSQSDALRDLEI 582
           + N    + +S SA AR   Q SFK+ TS +    +E++S S   R++EI
Sbjct: 539 AIN---AIPRSKSAFARMFSQNSFKKKTSYHGSSDQETESISA--RNVEI 583

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255572012\|ref\|XP_002526947.1\| conserved hypothetical protein [Ricinus communis] gi\|223533699\|gb\|EEF35434.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297805610\|ref\|XP_002870689.1\| hypothetical protein ARALYDRAFT_493918 [Arabidopsis lyrata subsp. lyrata] gi\|297316525\|gb\|EFH46948.1\| hypothetical protein ARALYDRAFT_493918 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30693640\|ref\|NP_198880.2\| uncharacterized protein [Arabidopsis thaliana] gi\|28393245\|gb\|AAO42051.1\| unknown protein [Arabidopsis thaliana] gi\|28827666\|gb\|AAO50677.1\| unknown protein [Arabidopsis thaliana] gi\|332007193\|gb\|AED94576.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225452236\|ref\|XP_002268688.1\| PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera] gi\|296081327\|emb\|CBI17709.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9758091\|dbj\|BAB08535.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449455894\|ref\|XP_004145685.1\| PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449492897\|ref\|XP_004159134.1\| PREDICTED: uncharacterized membrane protein At3g27390-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30688768\|ref\|NP_189375.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332278120\|sp\|Q8GUM4.2\|Y3739_ARATH RecName: Full=Uncharacterized membrane protein At3g27390 gi\|332643790\|gb\|AEE77311.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|27311557\|gb\|AAO00744.1\| Unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		583
TAIR\|locus:2168803		586	AT5G40640 [Arabidopsis thalian	0.984	0.979	0.618	3.7e-190
TAIR\|locus:2086726		588	AT3G27390 "AT3G27390" [Arabido	0.991	0.982	0.603	3e-188
TAIR\|locus:2135748		575	AT4G12680 "AT4G12680" [Arabido	0.941	0.954	0.461	2.3e-126
TAIR\|locus:2114960		569	AT4G37030 "AT4G37030" [Arabido	0.475	0.486	0.401	1.3e-92

TAIR\|locus:2168803 AT5G40640 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
 Identities = 368/595 (61%), Positives = 435/595 (73%)

Query:     1 MEPPKGFLASLWSFICFLPYFXXXXXXXXXXXXXFCPVICLMMTIGNSAIILGLLPAHVL 60
             MEPP G LASLW FI F+PYF              CP+ICL + IGNSAIILGLLP H +
Sbjct:     1 MEPPTGILASLWQFILFIPYFTGLLLLGVIKGIVLCPLICLTVAIGNSAIILGLLPVHAI 60

Query:    61 WTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGASIIGGALYGFLSPIFATFDAVG 120
             WT Y I  AKQLGP+LK+  C+C+P+ +ILW VVSI  S++GGA+YGFLSPIFATFDAVG
Sbjct:    61 WTLYSIASAKQLGPILKIFLCLCVPLGVILWLVVSILGSVLGGAIYGFLSPIFATFDAVG 120

Query:   121 EGKTNDIFHCFYDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRXX 180
             EGK+N  FHCFYDGTWST++ SFT+V DFKDVCFHSYFS MDDLR   A +  YYEIR  
Sbjct:   121 EGKSNPFFHCFYDGTWSTVQGSFTVVCDFKDVCFHSYFSFMDDLRTSTA-NRHYYEIRLL 179

Query:   181 XXXXXXXXXXXXXXXDVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAG 240
                            D PVIS++ALCKSPYMLFKGWHRLFHDLIGREGPFLET+CVP+AG
Sbjct:   180 QIPGAVIVAVLGILVDFPVISLLALCKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAG 239

Query:   241 LAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDIL 300
             L I+LWPLAVVGAVLGS+V+S+FLGAY GVV YQESS +FGL Y++A++SIYDEYSND+L
Sbjct:   240 LVILLWPLAVVGAVLGSVVSSVFLGAYGGVVSYQESSFFFGLCYVVASVSIYDEYSNDVL 299

Query:   301 DMPEGSCFPRPQYRKK---ADLXXXXXXXXXXXXKDPPSRTSSLRKP-IDLKPLELLERL 356
             DMPEGSCFPRP YR+    A              K  PSR  S + P IDLKPL+LLE L
Sbjct:   300 DMPEGSCFPRPIYRRNEEGASTAFSGGLSRPNSFKTTPSRGGSNKGPMIDLKPLDLLEAL 359

Query:   357 FKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILL 416
             F EC+RHGEI V++G+I +KDIE+AKS+ GSQV+S GLPAY LL  LLRS  +NS G+LL
Sbjct:   360 FVECRRHGEIMVTKGIINSKDIEEAKSSKGSQVISFGLPAYSLLHELLRSIKSNSTGLLL 419

Query:   417 SDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476
              D VTEIT+ NRPKD FFDWF NPFLI+K+QI+A NL+E EE+YL KLVL  G+  RLK 
Sbjct:   420 GDGVTEITTRNRPKDAFFDWFLNPFLILKDQIEAANLSEEEEEYLGKLVLLFGDSERLKS 479

Query:   477 LNV---SPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKN--- 530
               V   SPP +E ++AEL A ARRLQG+TKSVSRYPTFRR F +LVK L+ DL  K+   
Sbjct:   480 SIVESESPPLTELRKAELDAFARRLQGLTKSVSRYPTFRRHFVELVKKLSNDLDNKHNRF 539

Query:   531 -GGSESTNVP-KTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSDALRDLEIL 583
              GGS S   P KT+ +  S     QKSFK+ TSSN     +  S +  LRD++I+
Sbjct:   540 EGGSRSVPRPGKTVSRIFS-----QKSFKKKTSSNGS---DQDSPNRGLRDIDIV 586

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2086726 AT3G27390 "AT3G27390" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2135748 AT4G12680 "AT4G12680" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2114960 AT4G37030 "AT4G37030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_I002235	hypothetical protein (586 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		583
cd06941		195	NR_LBD_DmE78_like The ligand binding domain of Dro	93.79
smart00430		163	HOLI Ligand binding domain of hormone receptors.	92.04
cd06940		189	NR_LBD_REV_ERB The ligand binding domain of REV-ER	90.5
cd06931		222	NR_LBD_HNF4_like The ligand binding domain of hept	90.16
cd06945		239	NR_LBD_Nurr1_like The ligand binding domain of Nur	89.04
cd06944		237	NR_LBD_Ftz-F1_like The ligand binding domain of FT	88.43
cd06943		207	NR_LBD_RXR_like The ligand binding domain of the r	88.21
cd06937		231	NR_LBD_RAR The ligand binding domain (LBD) of reti	87.89
cd07075		248	NR_LBD_MR Ligand binding domain of the mineralocor	87.84
cd06938		231	NR_LBD_EcR The ligand binding domain (LBD) of the	86.26
PF00104		203	Hormone_recep: Ligand-binding domain of nuclear ho	86.21
cd06935		243	NR_LBD_TR The ligand binding domain of thyroid hor	86.13
cd06930		165	NR_LBD_F2 Ligand-binding domain of nuclear recepto	86.07
cd06942		191	NR_LBD_Sex_1_like The ligand binding domain of Cae	84.89
cd07069		241	NR_LBD_Lrh-1 The ligand binding domain of the live	83.75
cd07076		247	NR_LBD_GR Ligand binding domain of the glucocortic	82.91
cd06949		235	NR_LBD_ER Ligand binding domain of Estrogen recept	81.7
cd06954		236	NR_LBD_LXR The ligand binding domain of Liver X re	80.22
cd06929		174	NR_LBD_F1 Ligand-binding domain of nuclear recepto	80.14
cd06950		206	NR_LBD_Tlx_PNR_like The ligand binding domain of T	80.06

>cd06941 NR_LBD_DmE78_like The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily	Back alignment and domain information

Probab=93.79  E-value=0.51  Score=44.68  Aligned_cols=113  Identities=15%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             HHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCC
Q 007961          399 LLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLN  478 (583)
Q Consensus       399 lL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~  478 (583)
                      +++ +-++...++.++.+.|| ..++..+-......+ +.+++.-+=++++.++++++|=.||+-++|++.|....    
T Consensus        49 ll~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~allkAi~Lf~pd~~gl----  121 (195)
T cd06941          49 LVR-ISRLINSKSGSITFDDG-ISISRQQLDIIYDSD-FVKALFEFSDSFNSLGLSDTEVALFCAVVLLSPDRIGL----  121 (195)
T ss_pred             HHH-HHHHHcCCCCeEEecCC-eEeeHHHHHhccchH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCCCCC----
Confidence            444 34667777888999998 666543321100012 45677778889999999999999999999999775443    


Q ss_pred             CCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007961          479 VSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT  523 (583)
Q Consensus       479 g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~  523 (583)
                        -..+.+++.| +.+..-|+.-+.  +++|....||-+++..|-
T Consensus       122 --~~~~~Ve~lq-~~~~~aL~~~i~--~~~p~~~~rf~~Ll~~Lp  161 (195)
T cd06941         122 --SEPKKVAILQ-DRVLEALKVQVS--RNRPAEAQLFASLLMKIP  161 (195)
T ss_pred             --CCHHHHHHHH-HHHHHHHHHHHH--hhCCCcccHHHHHHHHhH
Confidence              1123344433 111222333333  468888899999887664

The ligand binding domain (LBD) of Drosophila ecdysone-induced protein 78 (E78) like: Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. Two isoforms of E78, E78A and E78B, are expressed from two nested transcription units. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. SmE78 may be involved in transduction of an ecdysone signal in S. mansoni, consistent with its function in Drosophila. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, E78-like receptors ha

>smart00430 HOLI Ligand binding domain of hormone receptors	Back alignment and domain information

>cd06940 NR_LBD_REV_ERB The ligand binding domain of REV-ERB receptors, members of the nuclear receptor superfamily	Back alignment and domain information

>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes	Back alignment and domain information

>cd06945 NR_LBD_Nurr1_like The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily	Back alignment and domain information

>cd06944 NR_LBD_Ftz-F1_like The ligand binding domain of FTZ-F1 like nuclear receptors	Back alignment and domain information

>cd06943 NR_LBD_RXR_like The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily	Back alignment and domain information

>cd06937 NR_LBD_RAR The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily	Back alignment and domain information

>cd07075 NR_LBD_MR Ligand binding domain of the mineralocorticoid receptor, a member of the nuclear receptor superfamily	Back alignment and domain information

>cd06938 NR_LBD_EcR The ligand binding domain (LBD) of the Ecdysone receptor, a member of the nuclear receptors super family	Back alignment and domain information

>PF00104 Hormone_recep: Ligand-binding domain of nuclear hormone receptor; InterPro: IPR000536 Steroid or nuclear hormone receptors constitute an important superfamily of transcription regulators that are involved in widely diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis	Back alignment and domain information

>cd06935 NR_LBD_TR The ligand binding domain of thyroid hormone receptor, a members of a superfamily of nuclear receptors	Back alignment and domain information

>cd06930 NR_LBD_F2 Ligand-binding domain of nuclear receptor family 2	Back alignment and domain information

>cd06942 NR_LBD_Sex_1_like The ligand binding domain of Caenorhabditis elegans nuclear hormone receptor Sex-1 protein	Back alignment and domain information

>cd07069 NR_LBD_Lrh-1 The ligand binding domain of the liver receptor homolog-1, a member of nuclear receptor superfamily,	Back alignment and domain information

>cd07076 NR_LBD_GR Ligand binding domain of the glucocorticoid receptor, a member of the nuclear receptor superfamily	Back alignment and domain information

>cd06949 NR_LBD_ER Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)	Back alignment and domain information

>cd06954 NR_LBD_LXR The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors	Back alignment and domain information

>cd06929 NR_LBD_F1 Ligand-binding domain of nuclear receptor family 1	Back alignment and domain information

>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		583
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 82/599 (13%), Positives = 162/599 (27%), Gaps = 183/599 (30%)

Query: 86  VFLILWPVVSIGASI----IGGAL---YGFLSPIFATFDAVGEGKTNDIFHCFYDGTWST 138
              + W ++S    +    +   L   Y FL     T        T  ++    D  ++ 
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYND 122

Query: 139 IKHSFT---IVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPGAIIA----GGL 191
               F    + R                LRQ         E+R    P   +      G 
Sbjct: 123 N-QVFAKYNVSR----------LQPYLKLRQA------LLELR----PAKNVLIDGVLGS 161

Query: 192 G-------VLIDVPVISV---------VALCKSPYMLFKGWHRLFHDLIGREGPFLETIC 235
           G       V +   V            +  C SP  + +   +L + +        +   
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 236 -VPLA-------------------GLAIIL---WPLAVVGAVLGS---MVT----SI--F 263
            + L                     L ++L          A   S   ++T     +  F
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 264 LGAYAGVVVYQESSLW-FGLRYIIAALSIYDEYSN-DILDMPEGSC--FP---------- 309
           L A     +  +               S+  +Y +    D+P       P          
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 310 -----RPQYRKKADLSRTSTFSRPSSFK--DPPSRTSSLRK--------PIDLK-PLELL 353
                     K  +  + +T    SS    +P       RK        P     P  LL
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAE----YRKMFDRLSVFPPSAHIPTILL 392

Query: 354 ERLFKECQRHGEIWVSEGLITAKDIE-DAKSNSGSQVVSIGLPAYCLLQALLRSAMANSP 412
             ++ +  +   + V   L     +E   K ++      I +P+   +   L+  + N  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST------ISIPS---IYLELKVKLENEY 443

Query: 413 G----ILLSDSVTEITSSN-RPKDVFFDWFFNPFLI--IKEQIKAENLTEAEEDYL---- 461
                I+   ++ +   S+         +F++  +   +K     E +T     +L    
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 462 --SKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDL- 518
              K+        R      +   S      L  L      I  +    P + R  + + 
Sbjct: 503 LEQKI--------RHDSTAWNASGS--ILNTLQQLKFYKPYICDN---DPKYERLVNAIL 549

Query: 519 --VKTLTEDLAKKNGGSESTNVPKTMQKSNSALARFQKSFKRLTSSNNGRYEESQSQSD 575
             +  + E+L      S+ T++   ++     +A        L + +   +EE+  Q  
Sbjct: 550 DFLPKIEENLIC----SKYTDL---LR-----IA--------LMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		583
1pzl_A		237	Hepatocyte nuclear factor 4-alpha; transcription;	93.55
2nxx_A		235	Ultraspiracle (USP, NR2B4); hormone receptor, APO	91.91
3oll_A		240	Estrogen receptor beta; steroid binding, phosphory	91.86
2iz2_A		243	FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuc	89.37
3k6p_A		248	Steroid hormone receptor ERR1; estrogen related re	89.08
1yye_A		268	ER-beta, estrogen receptor beta; ER-beta, nuclear	88.58
2p1t_A		240	Retinoic acid receptor RXR-alpha; protein-ligand c	88.16
3ltx_A		243	Estrogen receptor; constitutive, nuclear receptor,	87.96
1l2j_A		271	Estrogen receptor beta; nuclear receptor, transcri	86.95
1g2n_A		264	Ultraspiracle protein; antiparallel alpha-helical	86.51
3plz_A		257	FTZ-F1 related protein; alpha helical sandwhich, f	86.13
2e2r_A		244	Estrogen-related receptor gamma; ERR gamma, BPA, n	84.33
1ymt_A		246	Steroidogenic factor 1; SF-1, ligand-binding domai	83.75
2ocf_A		298	Estrogen receptor; estrogen receptor, LBD, monobod	83.69
1lbd_A		282	RXR_LBD, retinoid X receptor; transcription factor	83.62
3dzy_A		467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	81.39
3ipq_A		283	Oxysterols receptor LXR-alpha; LXR homodimer, LXR	80.84
1ovl_A		271	Orphan nuclear receptor NURR1 (MSe 414, 496, 511);	80.67
1fcy_A		236	RAR-gamma-1, retinoic acid receptor gamma-1; isoty	80.36
3tx7_B		352	Nuclear receptor subfamily 5 group A member 2; LRH	80.15

>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*	Back alignment and structure

Probab=93.55  E-value=0.61  Score=42.86  Aligned_cols=118  Identities=19%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             cchHHHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHH-HHHHHHHhccCChhHHHHhHhhhhccCCcc
Q 007961          394 LPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFL-IIKEQIKAENLTEAEEDYLSKLVLFCGNIG  472 (583)
Q Consensus       394 LPAyslL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~  472 (583)
                      -..+.+|..--+|.+ +++.+++.|| ..+.. |.++..-+.-++++++ -+-+.++.+++|++|=.||+-+++++.|..
T Consensus        83 ~~~~~~L~~a~~s~~-~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~  159 (237)
T 1pzl_A           83 AGEHLLLGATKRSMV-FKDVLLLGND-YIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK  159 (237)
T ss_dssp             HHHHHHHHHHHHHTT-SSSEEECTTS-CEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCT
T ss_pred             HHHHHHHHHHHHhhc-cCCceeecCC-cccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCC
Confidence            345677777778876 6778999999 76653 3344322233456654 566899999999999999999999987654


Q ss_pred             cccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007961          473 RLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT  523 (583)
Q Consensus       473 r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~  523 (583)
                      ...      ....+.+- -+.+++-|+--++  .++|....||-++++.|.
T Consensus       160 ~l~------~~~~ve~~-q~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~l~  201 (237)
T 1pzl_A          160 GLS------DPGKIKRL-RSQVQVSLEDYIN--DRQYDSRGRFGELLLLLP  201 (237)
T ss_dssp             TCS------CHHHHHHH-HHHHHHHHHHHHH--SSSSCCTTHHHHHHTHHH
T ss_pred             CCC------cHHHHHHH-HHHHHHHHHHHHH--hcCCChhhHHHHHHHHHH
Confidence            431      11222221 2233444444443  367777789998887663

PyMOL of 1pzl

>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}	Back alignment and structure

>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...	Back alignment and structure

>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A	Back alignment and structure

>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*	Back alignment and structure

>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...	Back alignment and structure

>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}	Back alignment and structure

>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1	Back alignment and structure

>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*	Back alignment and structure

>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A	Back alignment and structure

>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*	Back alignment and structure

>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*	Back alignment and structure

>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}	Back alignment and structure

>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A	Back alignment and structure

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*	Back alignment and structure

>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*	Back alignment and structure

>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1	Back alignment and structure

>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*	Back alignment and structure

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		583
d2j7ya1		236	Estrogen receptor beta {Rat (Rattus norvegicus) [T	91.89
d1xpca_		245	Estrogen receptor alpha {Human (Homo sapiens) [Tax	89.72
d1pq9a_		239	Oxysterols receptor LXR-beta {Human (Homo sapiens)	87.4
d2p1ta1		230	Retinoid-X receptor alpha (RXR-alpha) {Human (Homo	86.59
d1pk5a_		242	Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus	84.78
d1n46a_		251	Thyroid hormone receptor beta (TR-beta) {Human (Ho	83.14
d1xvpb_		246	Orphan nuclear receptor NR1I3 (CAR) {Human (Homo s	81.49
d1pzla_		233	Hepatocyte nuclear factor 4-alpha {Human (Homo sap	81.21
d1sqna_		251	Progesterone receptor {Human (Homo sapiens) [TaxId	80.97
d2e2ra1		223	Orphan nuclear receptor ERR3 {Human (Homo sapiens)	80.68
d3d24a1		227	Steroid hormone receptor ERR1 {Human (Homo sapiens	80.54

>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: All alpha proteins
fold: Nuclear receptor ligand-binding domain
superfamily: Nuclear receptor ligand-binding domain
family: Nuclear receptor ligand-binding domain
domain: Estrogen receptor beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.89  E-value=0.45  Score=42.15  Aligned_cols=123  Identities=16%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCC
Q 007961          398 CLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDL  477 (583)
Q Consensus       398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~  477 (583)
                      .+|..--+|.. ++..+++++| ........-.-.-+.=+.+.+.-+-+.++.++||++|=.||+-++|++.|..... +
T Consensus        78 ~~L~~a~~s~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaIvLf~pd~~~l~-~  154 (236)
T d2j7ya1          78 LMVGLMWRSID-HPGKLIFAPD-LVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLA-S  154 (236)
T ss_dssp             HHHHHHHHHTT-STTEEEEETT-EEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTCCCCC--
T ss_pred             HHHHHHHHhhc-CCCcEEecCC-cccCHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcCCCCc-c
Confidence            34444445544 3567889998 6555433222223334556777778889999999999999999999987764431 1


Q ss_pred             CCCCCchhhh-HHHHHHHHHHhhh-hhhcccCCchhhhhHHHHHHHHH
Q 007961          478 NVSPPESERK-RAELGALARRLQG-ITKSVSRYPTFRRQFDDLVKTLT  523 (583)
Q Consensus       478 ~g~pp~d~~r-rAqLqai~RRLqG-I~~s~SR~PT~RRrf~~lvK~L~  523 (583)
                      ...--++..| ..-++.....|+. +.+.-...|.-..||-+++..|-
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~p~~~~Rf~~LL~~Lp  202 (236)
T d2j7ya1         155 ANQEAESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLS  202 (236)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence            1110011111 1111222222222 22233456777778888876554

PyMOL of d2j7ya1

>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure