Query 007962
Match_columns 583
No_of_seqs 244 out of 2926
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 17:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 2.1E-56 4.5E-61 399.2 -3.8 552 1-581 1-564 (565)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-46 5.6E-51 413.3 35.9 499 10-559 70-585 (968)
3 PLN00113 leucine-rich repeat r 100.0 2.3E-45 4.9E-50 405.8 34.6 502 3-556 87-605 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 3.1E-42 6.8E-47 308.5 -12.6 458 6-539 65-545 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.5E-37 5.5E-42 289.8 8.9 385 46-556 53-450 (873)
6 KOG0618 Serine/threonine phosp 100.0 5.2E-39 1.1E-43 316.9 -4.0 491 13-568 2-499 (1081)
7 KOG4194 Membrane glycoprotein 100.0 3.2E-36 6.9E-41 282.5 8.3 381 11-460 54-448 (873)
8 KOG0618 Serine/threonine phosp 100.0 1.9E-35 4.1E-40 291.9 -3.1 441 11-532 23-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.8E-33 8.2E-38 264.1 0.7 379 9-459 7-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.2E-33 9.1E-38 263.8 -0.7 364 45-534 7-376 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3.3E-22 7.1E-27 221.5 28.6 336 174-556 548-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 7.6E-22 1.6E-26 218.6 26.5 335 132-536 553-909 (1153)
13 KOG4237 Extracellular matrix p 99.9 2E-25 4.3E-30 200.7 -4.1 258 12-284 49-355 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1E-21 2.2E-26 201.4 17.2 256 11-311 203-458 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.5E-20 3.3E-25 192.8 17.7 212 70-310 203-414 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 2.2E-20 4.9E-25 193.0 13.0 245 11-311 180-428 (754)
17 KOG4237 Extracellular matrix p 99.8 1.2E-21 2.6E-26 176.6 1.4 188 376-569 270-488 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 3.8E-19 8.3E-24 184.0 11.4 226 9-266 199-428 (754)
19 KOG0617 Ras suppressor protein 99.7 2.4E-20 5.3E-25 148.5 -4.2 163 41-204 29-193 (264)
20 KOG0617 Ras suppressor protein 99.7 4.8E-20 1E-24 146.9 -2.8 201 375-577 28-231 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 2E-16 4.3E-21 153.0 7.8 224 44-267 22-292 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 7.1E-16 1.5E-20 149.1 6.6 254 3-264 17-318 (319)
23 KOG1909 Ran GTPase-activating 99.4 2.4E-14 5.2E-19 128.1 1.0 222 44-265 29-310 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 2.3E-14 5E-19 136.1 -2.3 205 2-220 43-247 (722)
25 KOG1259 Nischarin, modulator o 99.4 1.6E-13 3.5E-18 120.1 2.0 130 426-560 283-414 (490)
26 KOG0532 Leucine-rich repeat (L 99.4 6.5E-14 1.4E-18 133.1 -1.5 191 11-217 77-270 (722)
27 COG4886 Leucine-rich repeat (L 99.3 2.9E-12 6.3E-17 127.4 7.9 176 89-266 114-290 (394)
28 COG4886 Leucine-rich repeat (L 99.3 2.7E-12 5.9E-17 127.5 6.8 177 45-223 116-293 (394)
29 KOG1909 Ran GTPase-activating 99.3 1.3E-13 2.9E-18 123.4 -2.5 238 62-310 24-310 (382)
30 PF14580 LRR_9: Leucine-rich r 99.3 3.2E-12 6.9E-17 107.7 5.2 105 44-150 18-126 (175)
31 KOG3207 Beta-tubulin folding c 99.3 7.9E-13 1.7E-17 121.9 1.1 203 64-266 117-339 (505)
32 PF14580 LRR_9: Leucine-rich r 99.3 5.1E-12 1.1E-16 106.5 5.3 139 51-192 3-148 (175)
33 KOG1259 Nischarin, modulator o 99.3 2.6E-12 5.6E-17 112.7 3.4 204 63-269 177-415 (490)
34 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.2E-17 120.1 0.4 205 357-562 121-343 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.1 6.6E-11 1.4E-15 125.4 6.1 221 44-266 544-783 (889)
36 KOG0531 Protein phosphatase 1, 99.0 3.6E-11 7.7E-16 119.5 -0.4 240 68-312 72-319 (414)
37 KOG0531 Protein phosphatase 1, 99.0 3.9E-11 8.4E-16 119.2 -1.3 218 43-266 70-290 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3E-14 115.5 5.9 262 45-308 523-804 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.4E-09 5.2E-14 74.0 2.9 59 499-557 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.5E-14 73.2 3.2 59 428-486 2-60 (61)
41 KOG2120 SCF ubiquitin ligase, 98.7 4.8E-10 1E-14 98.6 -4.7 175 381-556 186-374 (419)
42 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.1E-14 94.9 -3.5 173 68-241 185-374 (419)
43 PLN03150 hypothetical protein; 98.6 8.7E-08 1.9E-12 99.8 7.8 103 429-531 420-525 (623)
44 KOG1859 Leucine-rich repeat pr 98.5 4.1E-10 8.8E-15 110.8 -10.3 180 373-558 102-292 (1096)
45 KOG4341 F-box protein containi 98.5 2.7E-09 5.9E-14 98.5 -5.2 134 401-534 292-440 (483)
46 KOG4579 Leucine-rich repeat (L 98.5 1.8E-08 3.9E-13 78.2 -0.1 109 46-154 28-140 (177)
47 PLN03150 hypothetical protein; 98.5 2.6E-07 5.7E-12 96.3 8.4 105 452-556 419-526 (623)
48 KOG4341 F-box protein containi 98.4 1.1E-08 2.4E-13 94.5 -3.8 157 400-556 265-437 (483)
49 KOG1859 Leucine-rich repeat pr 98.4 3E-09 6.4E-14 104.9 -8.0 199 63-266 79-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.4 9.4E-09 2E-13 79.7 -3.9 138 429-567 29-168 (177)
51 PF12799 LRR_4: Leucine Rich r 98.4 5E-07 1.1E-11 56.8 4.1 40 45-84 1-40 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.4 5.5E-07 1.2E-11 78.7 5.3 176 44-219 29-254 (388)
53 KOG2982 Uncharacterized conser 98.3 2.3E-07 4.9E-12 82.1 1.9 101 49-149 49-158 (418)
54 PF12799 LRR_4: Leucine Rich r 98.3 7.5E-07 1.6E-11 56.0 3.1 37 499-535 2-38 (44)
55 KOG2982 Uncharacterized conser 98.3 3.2E-07 7E-12 81.2 1.6 200 68-267 45-263 (418)
56 PF13306 LRR_5: Leucine rich r 98.2 2.4E-06 5.2E-11 69.9 6.4 120 422-547 7-128 (129)
57 COG5238 RNA1 Ran GTPase-activa 98.2 2.9E-07 6.2E-12 80.4 0.8 193 63-266 25-255 (388)
58 PRK15386 type III secretion pr 98.2 3.2E-06 7E-11 80.7 7.2 133 5-171 48-188 (426)
59 KOG1644 U2-associated snRNP A' 98.2 2.8E-06 6E-11 71.1 5.9 102 48-150 22-126 (233)
60 PRK15386 type III secretion pr 98.2 9.4E-06 2E-10 77.6 9.6 154 376-555 48-210 (426)
61 PF13306 LRR_5: Leucine rich r 98.1 1.1E-05 2.3E-10 66.1 6.7 121 398-524 7-129 (129)
62 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.2E-11 90.4 1.9 108 425-534 146-263 (699)
63 KOG3665 ZYG-1-like serine/thre 98.0 5.6E-06 1.2E-10 86.1 5.4 82 44-126 147-232 (699)
64 KOG1644 U2-associated snRNP A' 98.0 9.9E-06 2.2E-10 67.9 5.6 127 382-510 21-152 (233)
65 KOG2739 Leucine-rich acidic nu 97.5 4.3E-05 9.4E-10 67.1 1.8 105 425-531 41-153 (260)
66 KOG2123 Uncharacterized conser 97.3 1.6E-05 3.4E-10 70.1 -3.2 97 45-143 19-123 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4.1E-09 63.2 1.5 84 65-149 40-128 (260)
68 KOG2123 Uncharacterized conser 97.1 1.9E-05 4.2E-10 69.5 -5.1 98 451-551 19-123 (388)
69 KOG1947 Leucine rich repeat pr 96.8 8.2E-05 1.8E-09 76.6 -4.5 183 356-547 187-389 (482)
70 KOG0473 Leucine-rich repeat pr 96.8 3.7E-05 8.1E-10 65.9 -5.8 104 12-127 21-124 (326)
71 KOG1947 Leucine rich repeat pr 96.7 0.00057 1.2E-08 70.4 1.4 191 44-243 213-440 (482)
72 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.4E-08 33.1 0.9 19 47-65 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.0056 1.2E-07 31.7 1.1 15 93-107 2-16 (22)
74 KOG4308 LRR-containing protein 95.5 0.00025 5.4E-09 70.8 -8.4 180 11-198 89-304 (478)
75 KOG0473 Leucine-rich repeat pr 95.2 0.00046 1E-08 59.4 -6.3 84 64-147 38-121 (326)
76 PF13504 LRR_7: Leucine rich r 95.1 0.015 3.2E-07 27.8 1.5 9 524-532 4-12 (17)
77 KOG4308 LRR-containing protein 95.1 0.0003 6.5E-09 70.2 -9.1 175 46-220 88-303 (478)
78 smart00370 LRR Leucine-rich re 94.4 0.033 7.1E-07 30.2 1.9 19 521-539 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 94.4 0.033 7.1E-07 30.2 1.9 19 521-539 2-20 (26)
80 KOG3864 Uncharacterized conser 94.2 0.0052 1.1E-07 52.1 -2.3 78 453-530 103-185 (221)
81 smart00369 LRR_TYP Leucine-ric 92.4 0.11 2.4E-06 28.1 1.9 22 545-566 2-23 (26)
82 smart00370 LRR Leucine-rich re 92.4 0.11 2.4E-06 28.1 1.9 22 545-566 2-23 (26)
83 KOG3864 Uncharacterized conser 92.2 0.012 2.5E-07 50.0 -3.2 82 403-484 101-185 (221)
84 PF13516 LRR_6: Leucine Rich r 87.2 0.28 6.1E-06 25.8 0.8 19 545-563 2-20 (24)
85 smart00364 LRR_BAC Leucine-ric 84.0 0.81 1.8E-05 24.6 1.5 18 521-538 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 81.1 1.6 3.4E-05 23.6 2.0 16 521-536 2-17 (26)
87 KOG3763 mRNA export factor TAP 78.9 1.9 4.2E-05 43.0 3.2 36 473-508 216-254 (585)
88 smart00367 LRR_CC Leucine-rich 78.9 1.7 3.7E-05 23.4 1.7 12 545-556 2-13 (26)
89 smart00368 LRR_RI Leucine rich 70.6 3.8 8.3E-05 22.5 1.8 19 545-563 2-20 (28)
90 PF01462 LRRNT: Leucine rich r 64.0 4.5 9.7E-05 22.3 1.2 18 11-28 10-27 (28)
91 KOG4242 Predicted myosin-I-bin 48.9 80 0.0017 31.5 7.5 81 11-102 216-310 (553)
92 smart00013 LRRNT Leucine rich 46.7 12 0.00027 21.5 1.2 20 11-30 10-29 (33)
93 KOG3763 mRNA export factor TAP 43.8 14 0.0003 37.3 1.7 64 447-511 214-283 (585)
94 PRK09718 hypothetical protein; 27.5 1.1E+02 0.0025 30.7 5.0 15 498-512 228-242 (512)
95 KOG4242 Predicted myosin-I-bin 24.8 2.4E+02 0.0052 28.5 6.5 37 382-418 415-455 (553)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-56 Score=399.20 Aligned_cols=552 Identities=48% Similarity=0.722 Sum_probs=454.1
Q ss_pred ChHHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCC
Q 007962 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (583)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l 80 (583)
++++.+.|++.+.+++|++.+.++|..+++=..-..+.+.||+-..+..+++++|.++.+.+.+.++..|.+++++++.+
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 46789999999999999999999999998766666789999999999999999999999989999999999999999999
Q ss_pred cccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCC
Q 007962 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (583)
Q Consensus 81 ~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~ 160 (583)
..+|++++.+..++.++.++|++..+|+.++.+.+|+++++++|.+..+++.++.+-.++.++..+|++.++|.++..+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCC
Q 007962 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (583)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (583)
+|..+++.++.+...++..+. ++.|++++...|.++.+|..++.+.+|..|++..|++..+| .|.+|..|++++++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999999988555 99999999999999999999999999999999999999998 7999999999999999
Q ss_pred CCccCchhhh-CCCCCCEEEccCCccccccccccccc-ccEEECcCCCCCCCChhhcccCCCcEEecCCCcccccccccc
Q 007962 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (583)
Q Consensus 241 ~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 318 (583)
.+..+|.... .++.+..||+.+|+++++|.+.+..+ ++++|+++|.++.+|..++++ .|+.+-+.||++.++.....
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999988765 89999999999999999999998887 999999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCcccccchhh------hhhhhhccccccceeecCCCCCccCChhhhccCC---ccEEEcCC
Q 007962 319 NGPTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (583)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~ 389 (583)
.+.....+++++..+.............. ..........+.+.+.+++-..+.+|...|.... .+..+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 99999999999885544322111000000 0000011112334444444444444444443322 44444444
Q ss_pred CCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCC
Q 007962 390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (583)
Q Consensus 390 ~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 469 (583)
|++.++|+.+..+..+.+ .+.+++|.+.-++.. +..+++|+.|++++|.+.+. +.
T Consensus 398 NqL~elPk~L~~lkelvT-----------------------~l~lsnn~isfv~~~-l~~l~kLt~L~L~NN~Ln~L-P~ 452 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVT-----------------------DLVLSNNKISFVPLE-LSQLQKLTFLDLSNNLLNDL-PE 452 (565)
T ss_pred chHhhhhhhhHHHHHHHH-----------------------HHHhhcCccccchHH-HHhhhcceeeecccchhhhc-ch
Confidence 444444444333333322 223333333323222 44455555555555544333 23
Q ss_pred CCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccc
Q 007962 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 548 (583)
Q Consensus 470 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 548 (583)
.++.+..|+.|+++.|++..+|..+.....++.+-.++|++..++. ++.++.+|.+||+.+|.|..+|+.++.. .+|+
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnm-tnL~ 531 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNM-TNLR 531 (565)
T ss_pred hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccc-ccee
Confidence 3566677888888888888888888888889999999999998754 4999999999999999999999998876 9999
Q ss_pred eeeccCCCCccchhHHhccchHHHHHHHhhcCC
Q 007962 549 ALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 581 (583)
Q Consensus 549 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
.|+++||+|+-.+.+++.-...+..+|++++||
T Consensus 532 hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdrIp 564 (565)
T KOG0472|consen 532 HLELDGNPFRQPRHQILMKGTAAILSYLRDRIP 564 (565)
T ss_pred EEEecCCccCCCHHHHhccChHHHHHHhcccCC
Confidence 999999999988888999999999999999999
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-46 Score=413.30 Aligned_cols=499 Identities=28% Similarity=0.363 Sum_probs=356.6
Q ss_pred hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhHh-hCCCCCCcEEEcCCCCCcc-cchh
Q 007962 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLSE-LPAA 86 (583)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~~-~~~~~~L~~L~L~~~~l~~-l~~~ 86 (583)
.+..+|++++++....... |..+++|++|++++|.+. .+|.. +.++++|++|++++|.+.. +|.
T Consensus 70 ~v~~L~L~~~~i~~~~~~~------------~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~- 136 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSA------------IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR- 136 (968)
T ss_pred cEEEEEecCCCccccCChH------------HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence 4555666665554332222 223567777777777765 56543 4477777777777776652 332
Q ss_pred hhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCcccccCCCCc
Q 007962 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS 163 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~ 163 (583)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 34667777777777665 56666777777777777777764 55666777777777777777665 4566677777777
Q ss_pred EEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCC
Q 007962 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA 241 (583)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 241 (583)
+|++++|.+....+..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 7777777766544445677777777777777664 45666777777777777777665 456666777777777777777
Q ss_pred Cc-cCchhhhCCCCCCEEEccCCcccccccc-c-ccccccEEECcCCCCCC-CChhhcccCCCcEEecCCCccccccccc
Q 007962 242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-A-CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL 317 (583)
Q Consensus 242 ~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (583)
+. .+|..+..+++|+.|++++|.+...... . ...+|+.+++++|.+.+ +|..++.+++|+.+++++|.+.......
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 66 5566677777777777777766532221 1 22347777777777664 5556677777777777776653221111
Q ss_pred cCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-C
Q 007962 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L 395 (583)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l 395 (583)
......++.+.+.+|.+. .++..+..+++|+.+++++|.++. +
T Consensus 376 -----------------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 376 -----------------------------------LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred -----------------------------------HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 111246788888888876 567777788899999999998875 6
Q ss_pred CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCC
Q 007962 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (583)
Q Consensus 396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 475 (583)
|..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.+.+..+. ....++|+.|++++|.++...+..+..++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChhhhhhh
Confidence 77788899999999999988887776677889999999999988764444 23568899999999999888888888899
Q ss_pred ccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCccccccccceeec
Q 007962 476 HLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRL 552 (583)
Q Consensus 476 ~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l 552 (583)
+|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+... ++|+.+++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~l 578 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVNI 578 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC-cccCEEec
Confidence 9999999999887 67888888999999999999988 56788889999999999999888 556555544 88999999
Q ss_pred cCCCCcc
Q 007962 553 DGNPLRS 559 (583)
Q Consensus 553 ~~~~~~~ 559 (583)
++|++..
T Consensus 579 s~N~l~~ 585 (968)
T PLN00113 579 SHNHLHG 585 (968)
T ss_pred cCCccee
Confidence 9998753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-45 Score=405.83 Aligned_cols=502 Identities=29% Similarity=0.379 Sum_probs=421.8
Q ss_pred HHHHHHhhhceeeccCCcCC-CCChhhhhcccccCCCCCcccccCccEEEcCCCcchh-hhHhhCCCCCCcEEEcCCCCC
Q 007962 3 RILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKL 80 (583)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-l~~~~~~~~~L~~L~L~~~~l 80 (583)
..+...+.+++++++++++. .+|..++.. +++|++|++++|+++. +|. ..+++|++|++++|.+
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~------------l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~ 152 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTT------------SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML 152 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHHhcc------------CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc
Confidence 34566789999999999997 788877643 7899999999998873 442 5689999999999998
Q ss_pred c-ccchhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCccc
Q 007962 81 S-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDL 156 (583)
Q Consensus 81 ~-~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l 156 (583)
. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 7 67889999999999999999876 78888999999999999999987 67888999999999999999887 678889
Q ss_pred ccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcE
Q 007962 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAE 234 (583)
Q Consensus 157 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 234 (583)
..+++|++|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 99999999999999988666666999999999999999885 57788889999999999999887 56778899999999
Q ss_pred EEcCCCCCc-cCchhhhCCCCCCEEEccCCcccc-cccccc-cccccEEECcCCCCCC-CChhhcccCCCcEEecCCCcc
Q 007962 235 FYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310 (583)
Q Consensus 235 L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 310 (583)
|++++|.+. .+|..+..+++|+.|++++|.+.. ++.... ..+|+.+++++|.+.+ +|..+..+++++.+++++|.+
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 999999888 667889999999999999998874 443322 3459999999998876 777788889999999999876
Q ss_pred ccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCC
Q 007962 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389 (583)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~ 389 (583)
....... .....+++.+++.+|.+. .++..+..++.|+.+++++
T Consensus 393 ~~~~p~~-----------------------------------~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 393 EGEIPKS-----------------------------------LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred cccCCHH-----------------------------------HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 4322111 112247889999999887 5677788899999999999
Q ss_pred CCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962 390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468 (583)
Q Consensus 390 ~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 468 (583)
|.+.. ++..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|++.+.....+..+++|+.|++++|.+....+
T Consensus 438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 99887 55567789999999999998886555543 56899999999999998777778999999999999999998888
Q ss_pred CCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCcccccc
Q 007962 469 PPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEP 545 (583)
Q Consensus 469 ~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~ 545 (583)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++. .+|... .. .
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~-~~-~ 594 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG-AF-L 594 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc-hh-c
Confidence 88999999999999999988 67788889999999999999998 78999999999999999999888 455432 11 3
Q ss_pred ccceeeccCCC
Q 007962 546 SLQALRLDGNP 556 (583)
Q Consensus 546 ~L~~L~l~~~~ 556 (583)
++....+.||+
T Consensus 595 ~~~~~~~~~n~ 605 (968)
T PLN00113 595 AINASAVAGNI 605 (968)
T ss_pred ccChhhhcCCc
Confidence 44444455554
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-42 Score=308.50 Aligned_cols=458 Identities=29% Similarity=0.419 Sum_probs=317.5
Q ss_pred HHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch
Q 007962 6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (583)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~ 85 (583)
++...+++++...+++.++|+.+.. ...+..++.++|++..+|+.+..++.|+.++++++.+..+++
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCc
Confidence 4445667777777777777776654 466777777777777777777777777777777777777777
Q ss_pred hhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEE
Q 007962 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165 (583)
Q Consensus 86 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 165 (583)
.++.+..|..++..+|.+..+|.++..+.+|..+++.+|.++.+|+..-.++.|++|++..|.++.+|+.++.+.+|.-|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 77777777777777777777777777777777888888877777766666778888888888777888888888888888
Q ss_pred EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhc-CCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCcc
Q 007962 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG-SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (583)
++..|++..++. |.+|..|.+++++.|.+..+|+... .++++..|++.+|++..+|..+..+.+|+.+++++|.++.
T Consensus 212 yL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 212 YLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc
Confidence 888888877773 7788888888888888777776654 6777888888888888888877777888888888888888
Q ss_pred CchhhhCCCCCCEEEccCCcccccccccccc--c--ccEEEC--cCCCCC--------------CCChhhcccCCCcEEe
Q 007962 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQL--R--LSVLDL--SNNSLS--------------GLPPEIGKMTTLRKLL 304 (583)
Q Consensus 245 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~--L~~L~l--~~~~~~--------------~~~~~~~~~~~L~~L~ 304 (583)
+|..++++ .|+.|-+.||.+..+-...... . ++++.- .+..++ ...+......+.+.++
T Consensus 290 Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 88888887 7888888888766433322111 0 232211 000000 0111122334455666
Q ss_pred cCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCcc-
Q 007962 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT- 383 (583)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~- 383 (583)
+++-+++.++..+|.... ..-...++++.|.+.++|..+.....+.
T Consensus 369 ~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 369 VSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred ccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 666555555544443211 1235778999999999999887765544
Q ss_pred EEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCcc
Q 007962 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (583)
Q Consensus 384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 463 (583)
.+.++++.+..+|..++.+++|..|++++|-+.+.+.+. +.+..|+.++++.|++..++..
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~------------------ 476 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC------------------ 476 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH------------------
Confidence 466677777777778888899999999888887777664 6677788888888876655532
Q ss_pred CCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962 464 SLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539 (583)
Q Consensus 464 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 539 (583)
+..+..++.+..+++++++++.+ +.++..|.+||+.+|++..+|..++++++|++|+++||.++ .|..
T Consensus 477 -------~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 477 -------LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred -------HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 22233444444445555555444 56677777777777777777777777777777777777776 4443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-37 Score=289.81 Aligned_cols=385 Identities=24% Similarity=0.319 Sum_probs=235.4
Q ss_pred CccEEEcCCCcchhhh-HhhCCC--CCCcEEEcCCCCCccc-chhhhCCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962 46 DLQKLILAHNNIEKLK-EDLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~-~~~~~~--~~L~~L~L~~~~l~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l 121 (583)
.-+.||+++..+..+. ..+..+ +.-+.||+++|.+.++ +..|.++++|+.+++..|.++.+|.-.+...+|++|++
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 3455888988888763 234333 3456699999998877 34788999999999999999999876666777999999
Q ss_pred CCCcCCcCC-cccccCCCCCEEEccccccCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc
Q 007962 122 SSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (583)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (583)
.+|.+.++. +.+..++.|++|+++.|.+..++. .+..-.++++|++++|.|.++..+.|..+..|..|.++.|+++.+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 998888764 467777788888888887776653 355556777777777777777666555555555555555444444
Q ss_pred chhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccccccccc
Q 007962 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278 (583)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~ 278 (583)
|. ..|..+++|+.|++..|.|... .-.|..+++|+.|.+..|++..+.++
T Consensus 213 p~----------------------r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG------- 263 (873)
T KOG4194|consen 213 PQ----------------------RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG------- 263 (873)
T ss_pred CH----------------------HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc-------
Confidence 32 1222233333333333333322 22344455555555544444332221
Q ss_pred EEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccc
Q 007962 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (583)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (583)
.|..+.+++++++..|.
T Consensus 264 --------------~Fy~l~kme~l~L~~N~------------------------------------------------- 280 (873)
T KOG4194|consen 264 --------------AFYGLEKMEHLNLETNR------------------------------------------------- 280 (873)
T ss_pred --------------ceeeecccceeecccch-------------------------------------------------
Confidence 23344455555555444
Q ss_pred cceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (583)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 437 (583)
+..+.. ++.++++|+.|+++.|.|..+....+..+++|++|+|+.|
T Consensus 281 ---------------------------------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 281 ---------------------------------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred ---------------------------------hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 333322 3344555555555555555555445555555555555555
Q ss_pred CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc----ccchhccCcccEEeCCCCcCCcc
Q 007962 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA----PTDILRLQQLRILDLSQNSLQSI 513 (583)
Q Consensus 438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~~L~~L~l~~n~l~~l 513 (583)
+++.++..+|..+..|+.|.++.|.++.+...+|..+.+|++|+|++|.++.. ...+.++++|++|++.||+++++
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 55555555555555555555555555555555555556666666666655522 12234577777777777777777
Q ss_pred ch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCC
Q 007962 514 PE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556 (583)
Q Consensus 514 ~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 556 (583)
|. +|..++.|++|++.+|.|.++.++.|.- ..|++|.+..-.
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~-m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEP-MELKELVMNSSS 450 (873)
T ss_pred chhhhccCcccceecCCCCcceeeccccccc-chhhhhhhcccc
Confidence 63 4777788888888888888877777765 477777665433
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-39 Score=316.91 Aligned_cols=491 Identities=29% Similarity=0.337 Sum_probs=401.5
Q ss_pred eeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCC
Q 007962 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (583)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~ 91 (583)
.+|.|..+++=||..++.. ..+..|+++.|-+-..| +..+++.+|+.||+++|.+...|..+..++
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 4788888999999988753 34888899888777765 456677779999999999999999999999
Q ss_pred CccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-
Q 007962 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (583)
Q Consensus 92 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~- 170 (583)
+|+.|+++.|.+...|.+..++.+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|..+..++.+..+..++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999889999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhh
Q 007962 171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (583)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 249 (583)
.+..+ +.. .++.+++..+.+. .++..+..+.. .+++.+|.+.. ..+..+.+|+.+....+.+..+..
T Consensus 149 ~~~~l-----g~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~-- 216 (1081)
T KOG0618|consen 149 KIQRL-----GQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEI-- 216 (1081)
T ss_pred hhhhh-----ccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEEe--
Confidence 22222 222 2777788877763 44444444444 59999998772 356778889999988888774422
Q ss_pred hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHH
Q 007962 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (583)
Q Consensus 250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 329 (583)
.-++++.|+.++|.+........+.++++++++++.+..+|.+++.+.+++.++...|.+..++...+.
T Consensus 217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~---------- 285 (1081)
T KOG0618|consen 217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISR---------- 285 (1081)
T ss_pred -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhh----------
Confidence 347899999999999877666677789999999999999999999999999999999988555433222
Q ss_pred HhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc-cCC-CCCcE
Q 007962 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSC-ASLQT 407 (583)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~-~~L~~ 407 (583)
...++.+....|.+..++.......+|++|++..|++.++|+.+ .-. .+|+.
T Consensus 286 --------------------------~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 286 --------------------------ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred --------------------------hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 13566677778888888888888899999999999999988732 222 23677
Q ss_pred EEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccc
Q 007962 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487 (583)
Q Consensus 408 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 487 (583)
+..+.+.+...+...=...+.|+.|.+.+|.+++--...+.++++|+.|++++|.+..+....+.+++.|++|+|+||++
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence 77777777665532224567899999999999986666689999999999999999988888899999999999999999
Q ss_pred cccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc--CCCCccccccccceeeccCCCCccchhHHh
Q 007962 488 REAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA--LPPELGLLEPSLQALRLDGNPLRSIRRTIL 565 (583)
Q Consensus 488 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 565 (583)
+.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|+|+. ++...-. ++|+.||++||.-..++.+.|
T Consensus 420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCcccccchhhh
Confidence 999999999999999999999999999 57889999999999999983 3333221 899999999999777777766
Q ss_pred ccc
Q 007962 566 DRG 568 (583)
Q Consensus 566 ~~~ 568 (583)
...
T Consensus 497 ~~l 499 (1081)
T KOG0618|consen 497 KVL 499 (1081)
T ss_pred HHh
Confidence 543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-36 Score=282.46 Aligned_cols=381 Identities=25% Similarity=0.351 Sum_probs=293.4
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhC
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~ 89 (583)
-..+||+.+++..+.....+.+. .+..+.||+++|++..+. ..|.++++|+.+++.+|.++.||.....
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~ 123 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE 123 (873)
T ss_pred ceeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccc
Confidence 45688888888876333322221 246788999999999884 5789999999999999999999988888
Q ss_pred CCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCCCC-cccccCCCCcEEE
Q 007962 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD 166 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~ 166 (583)
..+|+.|+|.+|.++.+. +.+..++.|+.||++.|.++.++. .+..-.++++|++++|.|+.+. ..|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 889999999999998654 458889999999999999998874 6777789999999999999775 4588899999999
Q ss_pred ecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCcc
Q 007962 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244 (583)
Q Consensus 167 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 244 (583)
+++|.++.++...|.++++|+.|++..|.+..+ -..|..+++|+.|.+..|.+..+. ..|..+.++++|++..|.+..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 999999999999999999999999999999765 346788999999999999998774 457889999999999999986
Q ss_pred Cc-hhhhCCCCCCEEEccCCcccc--cccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCC
Q 007962 245 LP-AELGKLSKLGTLDLHSNQLKE--YCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (583)
Q Consensus 245 l~-~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 320 (583)
+. .++.+++.|++|+++.|.+.. ...+.+..+|+.|+++.|++..+++. +..+..|++|+++.|.++.+...+|.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~- 362 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV- 362 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-
Confidence 64 478889999999999998774 34455555677777777766665543 55566666666666655444333222
Q ss_pred CcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc----CC
Q 007962 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LP 396 (583)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~ 396 (583)
..++|++|+++.|.+.. -.
T Consensus 363 ---------------------------------------------------------~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 363 ---------------------------------------------------------GLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred ---------------------------------------------------------HhhhhhhhcCcCCeEEEEEecch
Confidence 24566677777665543 23
Q ss_pred ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (583)
Q Consensus 397 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 460 (583)
..+.++++|++|++.||++..+....|.+++.|++|+|.+|.+-.+...+|..+ .|++|.+..
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 345667777777777777777777777777777777777777777766667666 666666643
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=291.90 Aligned_cols=441 Identities=27% Similarity=0.370 Sum_probs=287.2
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~ 90 (583)
+..++++.|-+.+-|.....+ +.+|+.||+++|.+..+|..+..+++|+.|+++.|.+..+|.+..++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 556666666666666444332 33466666666666666666666666666666666666666666666
Q ss_pred CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc-------------------ccC-
Q 007962 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT- 150 (583)
Q Consensus 91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~- 150 (583)
.+|+++.|..|.+..+|.++..+.+|+.|++++|.+..+|..+..+..+..+..++| .+.
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 666666666666666666666666666666666666666655555555555555555 222
Q ss_pred CCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCC
Q 007962 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (583)
Q Consensus 151 ~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (583)
.++.++..+++ .|++.+|.+.... +..+.+|+.+....+.+..+.. .-++|+.|+.+.|.+... .......
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~-~~~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTL-DVHPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceee-ccccccc
Confidence 22223333333 4666666655222 5555666666666665544321 235677777777766633 2233456
Q ss_pred CCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccccccccccc-ccEEECcCCCCCCCChhhcccCCCcEEecCCCc
Q 007962 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (583)
Q Consensus 231 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 309 (583)
+|+.++++.+.++.+|.++..+.+|+.++...|.+..++...+... |+++.+..|.+..+|+..+..++|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 7888888888888888888888888888888888877766555443 888888888888888888888888888888887
Q ss_pred cccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCC
Q 007962 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389 (583)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (583)
+...+...+... ..+++.+..+.
T Consensus 322 L~~lp~~~l~v~---------------------------------------------------------~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 322 LPSLPDNFLAVL---------------------------------------------------------NASLNTLNVSS 344 (1081)
T ss_pred ccccchHHHhhh---------------------------------------------------------hHHHHHHhhhh
Confidence 755543211110 01234444444
Q ss_pred CCCCcCCcc-ccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962 390 NSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468 (583)
Q Consensus 390 ~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 468 (583)
+.+...|.. =..++.|+.|.+.+|.+++.....+.+.++|+.|+|++|++..+++..+.+++.|+.|++|+|.++.+.
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp- 423 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP- 423 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-
Confidence 444444421 123456777777777777766666677777777777777777777777777777777777777776554
Q ss_pred CCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCCC
Q 007962 469 PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNN 532 (583)
Q Consensus 469 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~ 532 (583)
.....++.|++|...+|++..+| .+..+++|+.+|++.|+++ .+|+.... ++|++||++||.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 45667788888888888888887 6777888888888888887 34544443 788888888883
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-33 Score=264.11 Aligned_cols=379 Identities=28% Similarity=0.416 Sum_probs=311.3
Q ss_pred hhhceeeccCCcCC--CCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchh
Q 007962 9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~ 86 (583)
+.++-+|.|+|.+. .+|..+-+ ++.++-|.|..+++..+|+.++.+.+|+.|.+++|++.++-..
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence 45677899999776 78887754 7899999999999999999999999999999999999988888
Q ss_pred hhCCCCccEEEccCCccc--cCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcc-cccCCCCc
Q 007962 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS 163 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~ 163 (583)
++.++.|+.+.+.+|++. .+|..+..+..|..|++++|++..+|..+..-+++-+|++++|+|..||.. +.+++.|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 999999999999999886 799999999999999999999999999999999999999999999999865 78899999
Q ss_pred EEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEcCCC
Q 007962 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN 240 (583)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~ 240 (583)
+|+++.|.+..+++. ...+..|+.|.+++|.+..+. ..+..+++|+.|.+++.+-+ .+|..+..+.+|..++++.|
T Consensus 154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999999999998 899999999999999875331 23445788999999998655 88999999999999999999
Q ss_pred CCccCchhhhCCCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccC
Q 007962 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (583)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (583)
.+..+|+.+.++++|+.|++++|.++.+...... .++++|+++.|+++.+|..+..++.|+.|.+.+|.+.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------- 304 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------- 304 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence 9999999999999999999999999976554332 3589999999999999999999999999998888652
Q ss_pred CCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc
Q 007962 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399 (583)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l 399 (583)
+..+|+.++.+..|+++...+|.+.-+|..+
T Consensus 305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 3346666666666777777777776677777
Q ss_pred cCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCC
Q 007962 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (583)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 459 (583)
+.|.+|+.|.++.|++...+... .-++.|+.|++..|+-..+++..-..-++|+.-++.
T Consensus 336 cRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 77777777777777666655443 556777777777666554443322222344444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.2e-33 Score=263.79 Aligned_cols=364 Identities=24% Similarity=0.346 Sum_probs=270.1
Q ss_pred cCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 45 ~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
+-++-.|+++|.++ .+|.....++.++.|.|...++..+|+.++.+.+|++|++.+|.+..+...+..++.|+.+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 34677889999887 6788888899999999999999999999999999999999999988887788889999999999
Q ss_pred CCcCC--cCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962 123 SNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (583)
Q Consensus 123 ~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (583)
.|+++ .+|..+.++..|..|+++.|++.+.|..+...+++-.|++++|+|.+|+...|.++.-|-.|+++.|.+..+|
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 99876 7788888999999999999999999999999999999999999999888877777766666777776666666
Q ss_pred hhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEE
Q 007962 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL 280 (583)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L 280 (583)
..+..+..|+.|.+++|.+.-+. ...+..++.|+.|.+++.+-+
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQ----------------------LrQLPsmtsL~vLhms~TqRT-------------- 210 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQ----------------------LRQLPSMTSLSVLHMSNTQRT-------------- 210 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHH----------------------HhcCccchhhhhhhcccccch--------------
Confidence 66555556666666655433110 011112233333333332211
Q ss_pred ECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962 281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360 (583)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (583)
+.
T Consensus 211 ------l~------------------------------------------------------------------------ 212 (1255)
T KOG0444|consen 211 ------LD------------------------------------------------------------------------ 212 (1255)
T ss_pred ------hh------------------------------------------------------------------------
Confidence 11
Q ss_pred eeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (583)
Q Consensus 361 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 440 (583)
.+|.++..+.+|..++++.|++..+|.++..+++|+.|++++|+++...... +...+|+.|+++.|+++
T Consensus 213 ----------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 213 ----------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLT 281 (1255)
T ss_pred ----------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhc
Confidence 2333333445566666666666667777777777777777777777654432 55667777777777777
Q ss_pred cCCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcC
Q 007962 441 QVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKN 519 (583)
Q Consensus 441 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~ 519 (583)
.++.. +.++++|+.|.+.+|+++- -.++.++.+.+|+.+...+|.+.-+|+++..|+.|+.|.++.|.+..+|+++.-
T Consensus 282 ~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 282 VLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred cchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhh
Confidence 77654 6777777777777777653 335567788888888888888888888888888888888888888888888888
Q ss_pred CCCCCEEeCCCC-CCC
Q 007962 520 LTSLTELDLSDN-NIS 534 (583)
Q Consensus 520 ~~~L~~L~l~~~-~l~ 534 (583)
++.|+.||++.| .+-
T Consensus 361 L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLV 376 (1255)
T ss_pred cCCcceeeccCCcCcc
Confidence 888999998888 443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.3e-22 Score=221.48 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=184.5
Q ss_pred eechhhhcccccCcEEEcCCCcC-------CccchhhcCC-ccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC
Q 007962 174 VLSNNLIASWTMLTELIASKNLL-------NGMPETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (583)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 245 (583)
.+...+|.++++|+.|.+..+.. ..+|..+..+ .+|+.|.+.++.+..+|..+ ...+|++|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 34555577777777776654422 1234444443 35777777777777777666 356777777777777777
Q ss_pred chhhhCCCCCCEEEccCC-cccccccccccccccEEECcCCC-CCCCChhhcccCCCcEEecCCCc-cccccccccCCCc
Q 007962 246 PAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPT 322 (583)
Q Consensus 246 ~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 322 (583)
+..+..+++|+.++++++ .+..++......+|++|++++|. +..+|..+.++++|+.|++++|. +..++...
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----- 701 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----- 701 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-----
Confidence 766777777777777765 34555554455567777777763 44566667777777777777763 22222110
Q ss_pred HHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCcCCccccC
Q 007962 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSS 401 (583)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~ 401 (583)
...+|+.+.+++|... .++. ...+|++|+++++.+..+|..+ .
T Consensus 702 --------------------------------~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~ 745 (1153)
T PLN03210 702 --------------------------------NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-R 745 (1153)
T ss_pred --------------------------------CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-c
Confidence 0124555555555322 2221 1245666666666665555433 3
Q ss_pred CCCCcEEEccCCCCC-------CCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962 402 CASLQTLILSRNKIK-------DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (583)
Q Consensus 402 ~~~L~~L~l~~~~l~-------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 474 (583)
+++|++|.+.++... ......+...++|+.|++++|+.....+..+.++++|+.|++++|......+... .+
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 455555555543211 1111112234556666666654332222235566666666666553222222222 45
Q ss_pred CccceEecccc-cccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC-CCCcCCCCccccccccceeec
Q 007962 475 PHLQELYLRRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN-NISALPPELGLLEPSLQALRL 552 (583)
Q Consensus 475 ~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l 552 (583)
++|+.|++++| .+..+|.. .++|+.|++++|.++.+|..+..+++|++|++++| +++.++.....+ ++|+.+++
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l 900 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDF 900 (1153)
T ss_pred cccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeec
Confidence 66666666665 34444331 24566666666666666666666666666666665 555555554443 56666666
Q ss_pred cCCC
Q 007962 553 DGNP 556 (583)
Q Consensus 553 ~~~~ 556 (583)
++|+
T Consensus 901 ~~C~ 904 (1153)
T PLN03210 901 SDCG 904 (1153)
T ss_pred CCCc
Confidence 6663
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.6e-22 Score=218.62 Aligned_cols=335 Identities=22% Similarity=0.263 Sum_probs=199.0
Q ss_pred ccccCCCCCEEEccccccC-------CCCcccccC-CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 132 SLGRCLNLSDFKASNNCIT-------SLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 132 ~~~~~~~L~~L~l~~~~~~-------~l~~~l~~l-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
+|.++++|+.|.++.+... .+|..+..+ .+|+.|.+.++.+..++.. + ...+|+.|++.++.+..++..+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccccccccc
Confidence 4555666666665443211 234444443 3466666666665555543 2 3456666666666666555555
Q ss_pred cCCccccEEEccCCc-CcccCCCCcCCCCCcEEEcCCCC-CccCchhhhCCCCCCEEEccCC-cccccccccccccccEE
Q 007962 204 GSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVL 280 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L 280 (583)
..+++|+.++++++. +..+| .+..+++|+.|++.+|. +..+|..++.+++|+.|++++| .+..++...
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------- 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------- 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--------
Confidence 566666666666543 33443 35556666666666653 3355666666666666666654 333333322
Q ss_pred ECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962 281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360 (583)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (583)
++++|+.|++++|..... ......+++
T Consensus 702 ---------------~l~sL~~L~Lsgc~~L~~--------------------------------------~p~~~~nL~ 728 (1153)
T PLN03210 702 ---------------NLKSLYRLNLSGCSRLKS--------------------------------------FPDISTNIS 728 (1153)
T ss_pred ---------------CCCCCCEEeCCCCCCccc--------------------------------------cccccCCcC
Confidence 344444444444421000 000012344
Q ss_pred eeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--------ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEE
Q 007962 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--------PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432 (583)
Q Consensus 361 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--------~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 432 (583)
.++++++.+..+|..+ .+++|++|.+.++....++ .....+++|+.|++++|......+..++++++|+.|
T Consensus 729 ~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 729 WLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred eeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 4555555555454433 3556666666654322211 112234678888888886555445557888888888
Q ss_pred ecCCCC-CccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCC-cC
Q 007962 433 KLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN-SL 510 (583)
Q Consensus 433 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n-~l 510 (583)
++++|. +..++.. . .+++|+.|++++|......+ ...++|+.|++++|.++.+|..+..+++|+.|++++| .+
T Consensus 808 ~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 808 EIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred ECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 888874 4445543 2 67888999998875432211 2246788999999999988888888999999999986 57
Q ss_pred CccchhhcCCCCCCEEeCCCC-CCCcC
Q 007962 511 QSIPEGFKNLTSLTELDLSDN-NISAL 536 (583)
Q Consensus 511 ~~l~~~l~~~~~L~~L~l~~~-~l~~~ 536 (583)
+.+|..+..+++|+.+++++| .++.+
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CccCcccccccCCCeeecCCCcccccc
Confidence 778777788889999999998 66543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=2e-25 Score=200.68 Aligned_cols=258 Identities=24% Similarity=0.312 Sum_probs=182.6
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~ 89 (583)
..+||++.++++||+.++ ..-+.++|..|.|+.||+ .|+.+++|++|||++|+|+.| |++|.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP---------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP---------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccCC---------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 679999999999999996 468889999999999985 799999999999999999988 669999
Q ss_pred CCCccEEEccC-CccccCCcc-ccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCCc-ccccCCCCcEE
Q 007962 90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~-~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L 165 (583)
++.|..|-+-+ |+|+.+|.. |+++..|+.|.+.-|.+.-++ +.+..++++..|.+++|.+..++. .+..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99999888877 899999865 889999999999999888554 578899999999999999998876 68888888888
Q ss_pred EecCCcceee------------chhhhcccccCcEEEcCCCcC--------------------------Cccc-hhhcCC
Q 007962 166 DVEGNKLTVL------------SNNLIASWTMLTELIASKNLL--------------------------NGMP-ETIGSL 206 (583)
Q Consensus 166 ~l~~~~i~~~------------~~~~~~~~~~L~~L~l~~~~~--------------------------~~~~-~~l~~~ 206 (583)
.+..+.+... ....+++.....-..+...++ ...| ..|..+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 8776652210 000111111111111111111 1111 235566
Q ss_pred ccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccCc-hhhhCCCCCCEEEccCCcccccccccccc--cccEEEC
Q 007962 207 SRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDL 282 (583)
Q Consensus 207 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~L~~L~l 282 (583)
++|++|++++|.++.+ +.+|.....+++|.+..|++..+. ..|.++..|+.|++++|+++.+....+.. +|.++.+
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 6677777777766655 345666666777777776666442 34566666777777777666555444432 2444444
Q ss_pred cC
Q 007962 283 SN 284 (583)
Q Consensus 283 ~~ 284 (583)
-.
T Consensus 354 ~~ 355 (498)
T KOG4237|consen 354 LS 355 (498)
T ss_pred cc
Confidence 33
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=1e-21 Score=201.42 Aligned_cols=256 Identities=30% Similarity=0.373 Sum_probs=217.2
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~ 90 (583)
-..+||++++++++|..++ .+|+.|++++|+++.+|.. .++|++|++++|+++.+|.. .
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---c
Confidence 4579999999999999774 3799999999999999853 58999999999999988753 4
Q ss_pred CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (583)
Q Consensus 91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~ 170 (583)
++|+.|++++|.++.+|... ++|+.|++++|+++.+|.. .++|++|++++|.+..+|.. ..+|+.|++++|
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC
Confidence 68999999999998877633 5788999999999988863 47899999999999988753 346888999999
Q ss_pred cceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (583)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~ 250 (583)
.+..++.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+..+|..
T Consensus 333 ~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 333 QLTSLPTL----PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred cccccccc----ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence 99877641 25799999999999988753 36788999999999988754 35799999999999988764
Q ss_pred CCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311 (583)
Q Consensus 251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (583)
.++|+.|++++|.++.++.. ..+|+.|++++|.+..+|..+.++++++.+++++|++.
T Consensus 401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 36899999999999988753 34689999999999999999999999999999999875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.5e-20 Score=192.84 Aligned_cols=212 Identities=31% Similarity=0.362 Sum_probs=104.4
Q ss_pred CcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccccc
Q 007962 70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149 (583)
Q Consensus 70 L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 149 (583)
-..|+++++.++.+|..+. ++|+.|++.+|.++.+|.. .++|++|++++|+++.+|.. .++|++|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 4455666666555555443 2556666666655555532 34556666666655555432 24555555555555
Q ss_pred CCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCC
Q 007962 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229 (583)
Q Consensus 150 ~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 229 (583)
..++.. .++|+.|++++|++..++. ..++|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p 341 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---P 341 (788)
T ss_pred hhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---c
Confidence 544432 1345555555555554432 124455555555555554431 13455555555555554431 1
Q ss_pred CCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCc
Q 007962 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (583)
Q Consensus 230 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 309 (583)
.+|+.|++++|.++.+|.. .++|+.|++++|.+..++.. ..+|+.|++++|.+..+|.. .++|+.|++++|.
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred cccceEecCCCccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc---ccCCCEEEccCCc
Confidence 3455555555555555432 23455555555555544321 12344555555544444332 1344445555544
Q ss_pred c
Q 007962 310 L 310 (583)
Q Consensus 310 ~ 310 (583)
+
T Consensus 414 L 414 (788)
T PRK15387 414 L 414 (788)
T ss_pred C
Confidence 4
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.2e-20 Score=193.03 Aligned_cols=245 Identities=26% Similarity=0.433 Sum_probs=134.2
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~ 90 (583)
...+++++.+++++|..++ ++++.|++++|+++.+|..+. ++|+.|++++|.++.+|..+.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-- 240 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-- 240 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence 4556666666666665442 246666666666666654432 356666666666666555432
Q ss_pred CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (583)
Q Consensus 91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~ 170 (583)
++|+.|++++|.+..+|..+. .+|+.|++++|++..+|..+. ++|++|++++|.+..+|..+. ++|++
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~------ 308 (754)
T PRK15370 241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITH------ 308 (754)
T ss_pred ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHH------
Confidence 356666666666655555443 356666666666555554332 355555555555554443322 23444
Q ss_pred cceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (583)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~ 250 (583)
|++++|.+..+|..+. ++|+.|++++|.+..+|..+ +++|+.|++++|.+..+|..+.
T Consensus 309 ------------------L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp 366 (754)
T PRK15370 309 ------------------LNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP 366 (754)
T ss_pred ------------------HHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc
Confidence 4444444444443221 35555555555555554433 2456666666666555554432
Q ss_pred CCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhc----ccCCCcEEecCCCccc
Q 007962 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPLR 311 (583)
Q Consensus 251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~ 311 (583)
++|++|++++|.++.++... ...|+.|++++|.+..+|..+. .++.+..+++.+|++.
T Consensus 367 --~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 --PTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 46666666666666555432 2346666666666666554433 3466777888777763
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-21 Score=176.59 Aligned_cols=188 Identities=27% Similarity=0.371 Sum_probs=135.3
Q ss_pred hhccCCccEEEcCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962 376 IWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (583)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 454 (583)
+..+++|+++++++|.++.+. .+|.+...++.|.+.+|++..+...+|.++..|+.|+|.+|+|+.+.+.+|....+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 455788999999999888865 4688888899999999998888888889999999999999999988888888888999
Q ss_pred EEeCCCCccC----------------CCCCCCCCCCCccceEeccccccccc----ccc---------hhccCcccEE-e
Q 007962 455 ILDLSYNIAS----------------LPENPPFSSLPHLQELYLRRMQLREA----PTD---------ILRLQQLRIL-D 504 (583)
Q Consensus 455 ~L~l~~~~~~----------------~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~---------~~~~~~L~~L-~ 504 (583)
.|++-.|.+. ..+.........++.+.+++..+... |+. -..++.+.++ .
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR 429 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR 429 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence 9888765332 11112233344577777777655422 111 1134445443 3
Q ss_pred CCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhccch
Q 007962 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGT 569 (583)
Q Consensus 505 l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 569 (583)
.++..++.+|.++. ..-.+|++.||.++.+|.+. ..+| .+++++|+++.+....|.+..
T Consensus 430 cSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~~---~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 430 CSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDEL---LRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred hcccchhhcCCCCC--chhHHHhcccchhcccCHHH---Hhhh-hcccccCceehhhcccccchh
Confidence 44445667776653 45678899999999999872 2678 999999999988888776543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.8e-19 Score=183.95 Aligned_cols=226 Identities=24% Similarity=0.404 Sum_probs=190.3
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~ 88 (583)
..++.+++++|+++.+|..++ .+|++|++++|+++.+|..+. ++|+.|+|++|.+..+|..+.
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~---------------~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ---------------GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP 261 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc---------------cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence 468899999999999998764 479999999999999987664 479999999999999988764
Q ss_pred CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 168 (583)
.+|+.|++++|.++.+|..+. ++|++|++++|+++.+|..+. ++|+.|++++|.+..+|..+. ++|+.|+++
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAG 333 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceecccc
Confidence 589999999999998887664 589999999999998886543 579999999999998876543 789999999
Q ss_pred CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (583)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 248 (583)
+|.+..++.. + .+.|+.|++++|.+..+|..+. ++|+.|++++|.+..+|..+. ..|+.|++++|.+..+|..
T Consensus 334 ~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 334 ENALTSLPAS-L--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES 406 (754)
T ss_pred CCccccCChh-h--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh
Confidence 9999887754 2 3689999999999988887653 689999999999998887654 4689999999999987765
Q ss_pred hh----CCCCCCEEEccCCccc
Q 007962 249 LG----KLSKLGTLDLHSNQLK 266 (583)
Q Consensus 249 l~----~~~~L~~L~l~~~~l~ 266 (583)
+. ..+.+..+++.+|.+.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCcc
Confidence 43 4588899999999876
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2.4e-20 Score=148.53 Aligned_cols=163 Identities=29% Similarity=0.449 Sum_probs=127.7
Q ss_pred cccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEE
Q 007962 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (583)
Q Consensus 41 ~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~ 120 (583)
++++.+++.|.||+|+++.+|..++.+.+|++|++++|++..+|..++.+++|+.|++.-|++..+|..|+.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 45577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCcCC--cCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCc
Q 007962 121 CSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (583)
Q Consensus 121 l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (583)
+.+|.+. .+|..|..+..|+.|++++|.+..+|.+.+++++|+.|.+..|++-.++.. ++.+.+|++|.+.+|.++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 8888776 667777777788888888888887777777778777777777777666555 6666777777777777666
Q ss_pred cchhhc
Q 007962 199 MPETIG 204 (583)
Q Consensus 199 ~~~~l~ 204 (583)
+|..++
T Consensus 188 lppel~ 193 (264)
T KOG0617|consen 188 LPPELA 193 (264)
T ss_pred cChhhh
Confidence 665444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=4.8e-20 Score=146.88 Aligned_cols=201 Identities=33% Similarity=0.550 Sum_probs=175.8
Q ss_pred hhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (583)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 454 (583)
.++....++.|.+++|+++.+|+.+..+.+|+.|++++|++.+.+... +.+++|+.|++.-|++.-.+.. |+.+|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccc-cCCCchhh
Confidence 445667899999999999999999999999999999999999988764 8999999999998887766654 99999999
Q ss_pred EEeCCCCccCC-CCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCC
Q 007962 455 ILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533 (583)
Q Consensus 455 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l 533 (583)
.||+..|++.. ..+..|-.+..|+-|++++|.+..+|.+++.+++|+.|.+.+|++-++|..++.+++|++|++.||++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99999998865 44666777899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcccc--ccccceeeccCCCCccchhHHhccchHHHHHHHh
Q 007962 534 SALPPELGLL--EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577 (583)
Q Consensus 534 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (583)
+.+|+++..+ ..+=++..+..|++-..-.+.|.......+.|++
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yir 231 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIR 231 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHh
Confidence 9999987553 1234577788999888878888777777777765
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=2e-16 Score=152.97 Aligned_cols=224 Identities=25% Similarity=0.258 Sum_probs=142.2
Q ss_pred ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc-------cchhhhCCCCccEEEccCCccc-cCCccc
Q 007962 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIM-KIPDEI 110 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-------l~~~~~~~~~L~~L~L~~~~l~-~l~~~~ 110 (583)
..+|++++++++.++ .++..+...+.++.++++++.+.. ++..+..+++|++|++++|.+. ..+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 466888888888873 455667778888888888876652 2345677888888888888775 333334
Q ss_pred cccC---cccEEEcCCCcCCc-----CCcccccC-CCCCEEEccccccC-----CCCcccccCCCCcEEEecCCcceeec
Q 007962 111 GSAT---ALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS 176 (583)
Q Consensus 111 ~~l~---~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~~~~ 176 (583)
..+. +|++|++++|.+.. +...+..+ ++|++|++++|.+. .+...+..+++|++|++++|.+....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 3333 48888888887762 22344555 77888888888766 33445666777888888877766321
Q ss_pred h----hhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCcc--cC---CCC-cCCCCCcEEEcCCCC
Q 007962 177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS--IP---SSI-SGCCSLAEFYMGNNA 241 (583)
Q Consensus 177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~--~~---~~~-~~~~~L~~L~l~~~~ 241 (583)
. ..+...+.|++|++++|.+.. +...+..+++|++|++++|.+.. +. ..+ ...+.|++|++.+|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1 123444577777777776642 23345556777777777776652 11 111 123667777777776
Q ss_pred Cc-----cCchhhhCCCCCCEEEccCCcccc
Q 007962 242 LS-----ALPAELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 242 ~~-----~l~~~l~~~~~L~~L~l~~~~l~~ 267 (583)
++ .+...+..+++|+++++++|.+..
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 64 223345555677777777776664
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=7.1e-16 Score=149.09 Aligned_cols=254 Identities=22% Similarity=0.235 Sum_probs=184.1
Q ss_pred HHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-------hhhHhhCCCCCCcEEEc
Q 007962 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------KLKEDLRNLPLLTVLNV 75 (583)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-------~l~~~~~~~~~L~~L~L 75 (583)
.++.....+++++++++.+++-+...... .+...++++.++++++.+. .++..+.++++|+.|++
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~--------~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALAS--------ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHH--------HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 34566677999999999986432211111 1122567999999988766 23456888999999999
Q ss_pred CCCCCcc-cchhhhCC---CCccEEEccCCccc-----cCCcccccc-CcccEEEcCCCcCC-----cCCcccccCCCCC
Q 007962 76 SHNKLSE-LPAAIGEL---HMLKSLDVSFNSIM-----KIPDEIGSA-TALVKFDCSSNQLK-----ELPSSLGRCLNLS 140 (583)
Q Consensus 76 ~~~~l~~-l~~~~~~~---~~L~~L~L~~~~l~-----~l~~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~~~~L~ 140 (583)
++|.+.. .+..+..+ ++|++|++++|.++ .+...+..+ ++|+.|++++|.++ .++..+..+++|+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 9998873 33344444 45999999999876 233445667 89999999999987 3345677888999
Q ss_pred EEEccccccC-----CCCcccccCCCCcEEEecCCcceeechh----hhcccccCcEEEcCCCcCCcc-----chhh-cC
Q 007962 141 DFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNGM-----PETI-GS 205 (583)
Q Consensus 141 ~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~l-~~ 205 (583)
+|++++|.+. .++..+..+++|++|++++|.+...... .+..+++|++|++++|.+... ...+ ..
T Consensus 169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~ 248 (319)
T cd00116 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248 (319)
T ss_pred EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence 9999999887 2444566778999999999988754332 355678899999999988641 1111 12
Q ss_pred CccccEEEccCCcCc-----ccCCCCcCCCCCcEEEcCCCCCccC-----chhhhCC-CCCCEEEccCCc
Q 007962 206 LSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-----PAELGKL-SKLGTLDLHSNQ 264 (583)
Q Consensus 206 ~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~l~~~-~~L~~L~l~~~~ 264 (583)
.+.|++|++++|.++ .+...+..+++|+.+++++|.+..- ...+... +.|+++++.++.
T Consensus 249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 479999999999885 3344566678999999999998833 3334444 688888887764
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.43 E-value=2.4e-14 Score=128.14 Aligned_cols=222 Identities=21% Similarity=0.208 Sum_probs=141.6
Q ss_pred ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCccEEEccCCccc-cC
Q 007962 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI 106 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~~~~L~~L~L~~~~l~-~l 106 (583)
...+++++||+|.+. .+...+.+.+.|+..++++--.. .+| .++-.+++|++|+||+|.+. +.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 457888899988776 34556788888888888865322 333 34566788999999998776 32
Q ss_pred Cc----cccccCcccEEEcCCCcCCcC--------------CcccccCCCCCEEEccccccCC-----CCcccccCCCCc
Q 007962 107 PD----EIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS 163 (583)
Q Consensus 107 ~~----~~~~l~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~ 163 (583)
++ -+.+++.|++|.+.+|.+... .+....-+.|+++.++.|.+.. +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 22 255688888888888877521 1234456788888888887763 344566677888
Q ss_pred EEEecCCccee----echhhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCcc-----cCCCC-cC
Q 007962 164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSI-SG 228 (583)
Q Consensus 164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~-~~ 228 (583)
.+.+..|.|.. .-...+..+++|+.|++++|.++. +...++.+++|+.+++++|.+.. +...+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 88888777662 233446677777777777777642 33455566677777777776551 11112 23
Q ss_pred CCCCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCcc
Q 007962 229 CCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL 265 (583)
Q Consensus 229 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l 265 (583)
.|.|+.+.+.+|.|+ .+...+...+.|..|++++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 556666666666555 1122334455555566655554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=2.3e-14 Score=136.13 Aligned_cols=205 Identities=29% Similarity=0.375 Sum_probs=125.3
Q ss_pred hHHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc
Q 007962 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (583)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~ 81 (583)
.+++..|-+-+.+.+++..+..+|-+.+. ++ +..-...|++.|+...+|..+..|..|+.+.|..|.+-
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~~---------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--YD---------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCcccc--cc---------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 45677777888888888888888876654 22 34455567777777777766666666777777777777
Q ss_pred ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCC
Q 007962 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (583)
Q Consensus 82 ~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~ 161 (583)
.+|.++.++..|++++|+.|.+..+|..+..++ |+.|.+++|+++.+|..++....|..|+.+.|.+..++..+..+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 777777777777777777777666666665553 5566666666666665555555555555555555555555555555
Q ss_pred CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCc
Q 007962 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 220 (583)
|+.|.+..|++.+++.. +. .-.|..|+++.|.+..+|..|..+..|++|-+.+|.+.
T Consensus 191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 55555555555544443 22 22344445555554444444444445555555444443
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.37 E-value=1.6e-13 Score=120.06 Aligned_cols=130 Identities=38% Similarity=0.515 Sum_probs=78.8
Q ss_pred CCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeC
Q 007962 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505 (583)
Q Consensus 426 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 505 (583)
.+.|+++++++|.|+.+... ..-.|.++.|++|+|.+...+. +..+++|+.|++++|.++.+..+-..+.++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34566666666666655432 4445666666666666655443 55666666666666666665444445666666666
Q ss_pred CCCcCCccchhhcCCCCCCEEeCCCCCCCcCCC--CccccccccceeeccCCCCccc
Q 007962 506 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSI 560 (583)
Q Consensus 506 ~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~ 560 (583)
++|.+.++ ++++.+.+|..||+++|+|..+.+ .++.+ |.|+.+.+.|||++.+
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCcccc
Confidence 66666666 456666666777777766664332 34444 6666666777766544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=6.5e-14 Score=133.14 Aligned_cols=191 Identities=33% Similarity=0.468 Sum_probs=170.6
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~ 90 (583)
-...|++.+.+..+|..+.. +..|+.+.|.+|.+..+|..+.++..|+++||+.|+++.+|..++.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l 143 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL 143 (722)
T ss_pred hhhhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC
Confidence 45678999999999997754 56799999999999999999999999999999999999999988877
Q ss_pred CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (583)
Q Consensus 91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~ 170 (583)
+ |+.|-+++|+++.+|+.++.+.+|.+|+.+.|.+.++|..++.+.+|+.|++..|....+|+.+. .-.|..||++.|
T Consensus 144 p-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 144 P-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred c-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence 6 89999999999999999999999999999999999999999999999999999999999999888 556999999999
Q ss_pred cceeechhhhcccccCcEEEcCCCcCCccchhhcCC---ccccEEEccCC
Q 007962 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL---SRLIRLDLHQN 217 (583)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~---~~L~~L~l~~~ 217 (583)
++..++.. |..+..|++|.|.+|.+..=|..++.. .=.++|+...|
T Consensus 222 kis~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 222 KISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ceeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999887 999999999999999998877655432 23466666666
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.9e-12 Score=127.37 Aligned_cols=176 Identities=35% Similarity=0.513 Sum_probs=87.2
Q ss_pred CCCCccEEEccCCccccCCccccccC-cccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEe
Q 007962 89 ELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 167 (583)
..+.++.|++.++.++.++......+ +|+.|+++++.+..++..+..+++|+.|++++|++..++......+.|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 33445555555555554444444442 45555555555554444444555555555555555544444434455555555
Q ss_pred cCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCch
Q 007962 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (583)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~ 247 (583)
+++.+..++.. ......|+++.+++|.....+..+..+.++..+.+.++.+..++..++.++.++.+++++|.+..++.
T Consensus 194 s~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 55555544442 12333355555555544333444444555555555555554444455555555555555555555544
Q ss_pred hhhCCCCCCEEEccCCccc
Q 007962 248 ELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 248 ~l~~~~~L~~L~l~~~~l~ 266 (583)
++...+++.++++++.+.
T Consensus 273 -~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -ccccCccCEEeccCcccc
Confidence 555555555555555443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=2.7e-12 Score=127.54 Aligned_cols=177 Identities=31% Similarity=0.463 Sum_probs=136.3
Q ss_pred cCccEEEcCCCcchhhhHhhCCCC-CCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~-~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
+.++.|++.++.+++++....... +|+.|+++++.+..++..+..+++|+.|++++|.+..++......+.|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 567888888888888877666664 8888888888888887778888888888888888888877766788888888888
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
|++..+|........|+++.+++|.+...+..+.++.++..+.+..+.+..+... +..++.++.|++++|.+..++. +
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i~~-~ 273 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSISS-L 273 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceecccccccccccc-c
Confidence 8888887766666678888888886666666777778888888777776664332 6777778888888888877765 7
Q ss_pred cCCccccEEEccCCcCcccC
Q 007962 204 GSLSRLIRLDLHQNRILSIP 223 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~ 223 (583)
+...+++.++++++.+...+
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccCccCEEeccCccccccc
Confidence 77788888888887766443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-13 Score=123.42 Aligned_cols=238 Identities=25% Similarity=0.322 Sum_probs=120.8
Q ss_pred HhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc----cCCcc-------ccccCcccEEEcCCCc
Q 007962 62 EDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM----KIPDE-------IGSATALVKFDCSSNQ 125 (583)
Q Consensus 62 ~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~~~-------~~~l~~L~~L~l~~~~ 125 (583)
+....+..++.|+||+|.+. -+...+.+.++|+..++++--.. .+|+. +..+++|++++||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 45677888999999999877 23446778889999998864222 34443 3445566666666665
Q ss_pred CC-cCC----cccccCCCCCEEEccccccCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc
Q 007962 126 LK-ELP----SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (583)
Q Consensus 126 ~~-~~~----~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (583)
+. ..+ ..+..+..|++|.+.+|.+..... .+++ .|.+|. ........+.|+.+....|++..-
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 54 111 233455566666666555541110 0000 000000 000012234455555555544322
Q ss_pred -----chhhcCCccccEEEccCCcCc-----ccCCCCcCCCCCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCc
Q 007962 200 -----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQ 264 (583)
Q Consensus 200 -----~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~ 264 (583)
...+...+.|+.+.+..|.+. .+...+..|++|+.|++++|.++ .+...+..+++|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 223444455555555555443 11233455555555555555555 223344555555666665555
Q ss_pred cccccccc-------ccccccEEECcCCCCCC-----CChhhcccCCCcEEecCCCcc
Q 007962 265 LKEYCVEA-------CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL 310 (583)
Q Consensus 265 l~~~~~~~-------~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~ 310 (583)
+..-.... ..++|+.+.+.+|.++. +...+...+.|..|++++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 54322111 12235555555555444 222344567777777877766
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=3.2e-12 Score=107.71 Aligned_cols=105 Identities=29% Similarity=0.410 Sum_probs=29.0
Q ss_pred ccCccEEEcCCCcchhhhHhhC-CCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCcccc-ccCcccEEEc
Q 007962 44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDC 121 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l 121 (583)
+.++++|+|+++.|+.+. .++ .+.+|+.|++++|.++++ +.+..+++|+.|++++|.++.+...+. .+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 445666677666666663 333 456666666666666665 345556666666666666665544332 4566666666
Q ss_pred CCCcCCcCC--cccccCCCCCEEEccccccC
Q 007962 122 SSNQLKELP--SSLGRCLNLSDFKASNNCIT 150 (583)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 150 (583)
++|++..+. ..+..+++|++|++.+|.+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666655432 23445555555555555544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.9e-13 Score=121.90 Aligned_cols=203 Identities=21% Similarity=0.216 Sum_probs=129.5
Q ss_pred hCCCCCCcEEEcCCCCCcccc--hhhhCCCCccEEEccCCcccc---CCccccccCcccEEEcCCCcCCcCCc--ccccC
Q 007962 64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPS--SLGRC 136 (583)
Q Consensus 64 ~~~~~~L~~L~L~~~~l~~l~--~~~~~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~ 136 (583)
=.++.+|+.+.|.++.+...+ .....|++++.|||++|-+.. +..-..++++|+.|+++.|.+..... .-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356677777777777776554 366677788888887775552 22335677778888888777653321 12255
Q ss_pred CCCCEEEccccccC--CCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc--hhhcCCccccEE
Q 007962 137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL 212 (583)
Q Consensus 137 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L 212 (583)
+.|+.|.++.|++. ++...+..+++|+.|++.+|....+......-+..|+.|++++|.+...+ ...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 67777777777776 44445666777777777777533333333445566777777777775544 345667777777
Q ss_pred EccCCcCccc--CCC-----CcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCccc
Q 007962 213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 213 ~l~~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~ 266 (583)
+++.+.+..+ |+. ...+++|+.|++..|++... ...+..+++|+.+.+..+.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777777643 322 34566777777777777533 335566677777777666555
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=5.1e-12 Score=106.52 Aligned_cols=139 Identities=29% Similarity=0.358 Sum_probs=48.1
Q ss_pred EcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh-CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC
Q 007962 51 ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129 (583)
Q Consensus 51 ~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~ 129 (583)
.+..+.|...+ .+.+..++++|+|+++.|+.+. .++ .+.+|+.|++++|.++.++ .+..+++|+.|++++|.++++
T Consensus 3 ~lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 3 RLTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-
T ss_pred ccccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 34455566554 4556668899999999998774 454 5789999999999988774 577889999999999999888
Q ss_pred Cccc-ccCCCCCEEEccccccCCCC--cccccCCCCcEEEecCCcceeec---hhhhcccccCcEEEcC
Q 007962 130 PSSL-GRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLS---NNLIASWTMLTELIAS 192 (583)
Q Consensus 130 ~~~~-~~~~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~i~~~~---~~~~~~~~~L~~L~l~ 192 (583)
...+ ..+|+|++|++++|++..+. ..+..+++|+.|++.+|++.... ...+..+|+|+.|+-.
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6555 46889999999998887553 35677888888888888776332 2234455556555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=2.6e-12 Score=112.66 Aligned_cols=204 Identities=25% Similarity=0.278 Sum_probs=132.4
Q ss_pred hhCCCCCCcEEEcCCCC--Cc-------ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC---
Q 007962 63 DLRNLPLLTVLNVSHNK--LS-------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--- 130 (583)
Q Consensus 63 ~~~~~~~L~~L~L~~~~--l~-------~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~--- 130 (583)
.+.-+..|++|.+++.. +. .+|-.+..+++|+.+.+++|.-..+-.....=|.|+++.++.......+
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc
Confidence 34445566666655431 11 1122344456666666666644433222223345666655544322111
Q ss_pred ---------------------cccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEE
Q 007962 131 ---------------------SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189 (583)
Q Consensus 131 ---------------------~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 189 (583)
..+.....|.++++++|.|..+.++..-.++++.|+++.|.+..+.. ++.+++|++|
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~L 334 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLL 334 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEe
Confidence 11223456778888888888877777778888888888888887776 7778888888
Q ss_pred EcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCc--hhhhCCCCCCEEEccCCcccc
Q 007962 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~ 267 (583)
++++|.++.+..|-..+-+++.|.+++|.+..+ +.+..+-+|+.|++++|.|..+. ..++++|.|+++.+.+|.+..
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888877766666677888888888877765 45667777888888888887553 357788888888888877664
Q ss_pred cc
Q 007962 268 YC 269 (583)
Q Consensus 268 ~~ 269 (583)
++
T Consensus 414 ~v 415 (490)
T KOG1259|consen 414 SV 415 (490)
T ss_pred cc
Confidence 43
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=120.13 Aligned_cols=205 Identities=27% Similarity=0.265 Sum_probs=132.8
Q ss_pred cccceeecCCCCCccCC--hhhhccCCccEEEcCCCCCCc---CCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCc
Q 007962 357 VTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLS 430 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~ 430 (583)
.+|+++.+.++.+...+ .....++.++.|+++.|-+.. +.+....+|+|+.|+++.|++..... ..-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 46677777777766554 355567888888888876554 33345677888888888887665322 1123567788
Q ss_pred EEecCCCCCccCCC-CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccc--cchhccCcccEEeCCC
Q 007962 431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQ 507 (583)
Q Consensus 431 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~ 507 (583)
.|.+++|.++.-.. .....+|+|+.|++..|............+..|++|+|++|++...+ ...+.++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 88888887763111 11456788888888777533333334555677888888888777554 3455678888888888
Q ss_pred CcCCcc--chh-----hcCCCCCCEEeCCCCCCCcCCC--CccccccccceeeccCCCCccchh
Q 007962 508 NSLQSI--PEG-----FKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSIRR 562 (583)
Q Consensus 508 n~l~~l--~~~-----l~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~ 562 (583)
|.+.++ |++ ...+++|++|++..|+|..++. .+..+ ++|+.+.+.+|++..-..
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYLNKETD 343 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhccccccccccc
Confidence 877743 333 4566788888888887765543 23333 677777777777754443
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=6.6e-11 Score=125.35 Aligned_cols=221 Identities=24% Similarity=0.298 Sum_probs=127.4
Q ss_pred ccCccEEEcCCCc--chhhhH-hhCCCCCCcEEEcCCC-CCcccchhhhCCCCccEEEccCCccccCCccccccCcccEE
Q 007962 44 AVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (583)
Q Consensus 44 ~~~L~~L~ls~~~--i~~l~~-~~~~~~~L~~L~L~~~-~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 119 (583)
+++|++|-+..+. +..++. .|..+|.|++|||++| .+..+|..++.+.+|++|+++++.+..+|..++++..|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4467777777775 555553 4777888888888866 45678888888888888888888888888888888888888
Q ss_pred EcCCCcCC-cCCcccccCCCCCEEEccccccCC---CCcccccCCCCcEEEecCCcceeechhhhcccccCc----EEEc
Q 007962 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT----ELIA 191 (583)
Q Consensus 120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~----~L~l 191 (583)
++..+... .++.....+.+|++|.+....... .-..+..+.+|+.+....... .+... +..+.+|+ .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-LLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-hhhhHHHHHHhHhhhh
Confidence 88876533 444555567888888877665221 112334444444444433222 11111 23333333 2233
Q ss_pred CCCcCCccchhhcCCccccEEEccCCcCcccCC-CC-----cC-CCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCc
Q 007962 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----SG-CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (583)
Q Consensus 192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-----~~-~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~ 264 (583)
.++.....+..+..+.+|+.|.+.++.+..... .. .. ++++..+.+.++.....+.+....++|+.+.+..+.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 333334444556666777777777776652211 11 11 223333333344333333444455677777776665
Q ss_pred cc
Q 007962 265 LK 266 (583)
Q Consensus 265 l~ 266 (583)
..
T Consensus 782 ~~ 783 (889)
T KOG4658|consen 782 LL 783 (889)
T ss_pred cc
Confidence 44
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.02 E-value=3.6e-11 Score=119.47 Aligned_cols=240 Identities=27% Similarity=0.348 Sum_probs=108.4
Q ss_pred CCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc
Q 007962 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN 147 (583)
Q Consensus 68 ~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 147 (583)
..++.+.+..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++.+|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC
Confidence 33334444444444332334444444444444444444433344444444444444444444 23333444555555555
Q ss_pred ccCCCCcccccCCCCcEEEecCCcceeech-hhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCC
Q 007962 148 CITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226 (583)
Q Consensus 148 ~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 226 (583)
.+..+. .+..++.|+.+++++|.+..+.. . ...+..++.+.+.++.+..+. ++.....+..+++..+.+..+. .+
T Consensus 151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~l 226 (414)
T KOG0531|consen 151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-GL 226 (414)
T ss_pred cchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-Cc
Confidence 444442 33334555555555555544443 1 234444555555555444331 1222233333344444444331 11
Q ss_pred cCCC--CCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCC----CCh-hhcccCC
Q 007962 227 SGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKMTT 299 (583)
Q Consensus 227 ~~~~--~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~~~-~~~~~~~ 299 (583)
.... +|+.+++.++.+...+..+..+.++..+++.++.+...........+..+....+.+.. ... .....+.
T Consensus 227 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPT 306 (414)
T ss_pred ccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccccc
Confidence 2222 25666666666655545555556666666666655544333333333333333333331 111 1344566
Q ss_pred CcEEecCCCcccc
Q 007962 300 LRKLLLTGNPLRT 312 (583)
Q Consensus 300 L~~L~l~~~~~~~ 312 (583)
++.+.+.+++...
T Consensus 307 ~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 307 LVTLTLELNPIRK 319 (414)
T ss_pred ccccccccCcccc
Confidence 6777777665543
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=3.9e-11 Score=119.20 Aligned_cols=218 Identities=27% Similarity=0.375 Sum_probs=166.3
Q ss_pred cccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 43 ~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
.+..++.+++..+.|+.+-..+..+.+|+.+++.++.+..+...+..+++|++|++++|.++.+. .+..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 35677778888888888656788899999999999999988666889999999999999998763 56777889999999
Q ss_pred CCcCCcCCcccccCCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch
Q 007962 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (583)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (583)
+|.+..+. .+..++.|+.+++++|.+..+... +..+.+++.+.+.++.+..+.. +.....+..+++..+.+..+..
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC
Confidence 99998874 566689999999999999887553 5888999999999998887765 4444455555777887765532
Q ss_pred hhcCCcc--ccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc
Q 007962 202 TIGSLSR--LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 202 ~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 266 (583)
+..... |+.++++++.+..++..+..++++..+++.++.+..+ ..+...+.+..+....+.+.
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred -cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc-ccccccchHHHhccCcchhc
Confidence 222233 8899999998887767788888999999998887754 22333445555555555443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.4e-09 Score=115.54 Aligned_cols=262 Identities=22% Similarity=0.276 Sum_probs=174.6
Q ss_pred cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCC--Ccccch-hhhCCCCccEEEccCC-ccccCCccccccCcccEEE
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD 120 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~--l~~l~~-~~~~~~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~ 120 (583)
...+.+.+-++.+..++... .+++|+.|-+.++. +..++. .|..++.|++|||++| .+.++|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 46788888888888776443 45689999888885 566655 5888999999999988 5679999999999999999
Q ss_pred cCCCcCCcCCcccccCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCcc--eeechhhhcccccCcEEEcCCCcCC
Q 007962 121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNLLN 197 (583)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (583)
++++.+..+|..+.++.+|.+|++..+... .++.....+++|++|.+..... .......+..+.+|+.+.......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 999999999999999999999999987654 4455666799999999976542 222223345556666666544433
Q ss_pred ccchhhcCCccc----cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCch-h-----hhC-CCCCCEEEccCCcc-
Q 007962 198 GMPETIGSLSRL----IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-E-----LGK-LSKLGTLDLHSNQL- 265 (583)
Q Consensus 198 ~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-----l~~-~~~L~~L~l~~~~l- 265 (583)
.+...+..+..| +.+.+.++.....+..+..+.+|+.|.+.++.+..... . ... ++++..+.+.++..
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 111112222222 23443444555666778888999999999888763211 1 111 33444444445432
Q ss_pred cccccccccccccEEECcCCCCCC-CChhhcccCCCcEEecCCC
Q 007962 266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGN 308 (583)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 308 (583)
.......++++|+.+.+..|.... +.+....+..+.++.+..+
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 334445577788888888775444 3333444444554444433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.4e-09 Score=74.04 Aligned_cols=59 Identities=46% Similarity=0.689 Sum_probs=33.7
Q ss_pred cccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCC
Q 007962 499 QLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (583)
Q Consensus 499 ~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (583)
+|++|++++|.++.+|. .|..+++|++|++++|+|+.+++..+..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45555555555555543 355556666666666666655555555556666666666553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3.5e-09 Score=73.23 Aligned_cols=59 Identities=39% Similarity=0.584 Sum_probs=32.6
Q ss_pred CCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccc
Q 007962 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486 (583)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 486 (583)
+|++|++++|++..++...|.++++|++|++++|.+..+.+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555555555555555555555555554
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.8e-10 Score=98.61 Aligned_cols=175 Identities=26% Similarity=0.248 Sum_probs=112.2
Q ss_pred CccEEEcCCCCCCc--CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC-CccCC-CCccCCCCcccEE
Q 007962 381 EITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVP-SDGFKDIPMLQIL 456 (583)
Q Consensus 381 ~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L 456 (583)
.++.+|++...++. +--.+++|.+|+.|.+.|+++.+.....+..-.+|+.++++.|+ +++.. .-.+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57778888776654 33346678888888888888887777777778888888888765 33211 1125778888888
Q ss_pred eCCCCccCCCCCCCC-C-CCCccceEeccccc--cc--ccccchhccCcccEEeCCCCc-CC-ccchhhcCCCCCCEEeC
Q 007962 457 DLSYNIASLPENPPF-S-SLPHLQELYLRRMQ--LR--EAPTDILRLQQLRILDLSQNS-LQ-SIPEGFKNLTSLTELDL 528 (583)
Q Consensus 457 ~l~~~~~~~~~~~~~-~-~l~~L~~L~l~~~~--l~--~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l 528 (583)
+++-|.......... . --++|+.|+++||. +. .+..-...|++|..||+++|. ++ +.-..+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888775543222111 1 23678888888883 22 222223468888888888884 44 33344677888888888
Q ss_pred CCC-CCC-cCCCCccccccccceeeccCCC
Q 007962 529 SDN-NIS-ALPPELGLLEPSLQALRLDGNP 556 (583)
Q Consensus 529 ~~~-~l~-~~~~~~~~~~~~L~~L~l~~~~ 556 (583)
+.| .|- .---++. ..|+|.+|++-||-
T Consensus 346 sRCY~i~p~~~~~l~-s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELN-SKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeec-cCcceEEEEecccc
Confidence 888 443 1111122 23788888888874
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.9e-09 Score=94.92 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=106.4
Q ss_pred CCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCc-CCcC--CcccccCCCCCE
Q 007962 68 PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKEL--PSSLGRCLNLSD 141 (583)
Q Consensus 68 ~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~ 141 (583)
..|+++||++..++ ++-..++.|.+|+.|++.++.+. .+-..+.+..+|+.|+++.|. +++. .-.+..|+.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35777777776665 34445667777777777777665 333446666777777777664 4322 224667778888
Q ss_pred EEccccccCC-CCc-cc-ccCCCCcEEEecCCcce----eechhhhcccccCcEEEcCCCcCC--ccchhhcCCccccEE
Q 007962 142 FKASNNCITS-LPE-DL-ADCSKMSKLDVEGNKLT----VLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRL 212 (583)
Q Consensus 142 L~l~~~~~~~-l~~-~l-~~l~~L~~L~l~~~~i~----~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L 212 (583)
|++++|.... ... .. .--++|..|+++|+.-. .+. ....++++|.+|+++++..- .....+..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 8888775541 100 11 11256777777776321 121 22556788888888887552 334456677888888
Q ss_pred EccCCcCc--ccCCCCcCCCCCcEEEcCCCC
Q 007962 213 DLHQNRIL--SIPSSISGCCSLAEFYMGNNA 241 (583)
Q Consensus 213 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 241 (583)
.++.|..- +..-.+...|.|.+|++.++-
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 88887532 111235677888888887763
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=8.7e-08 Score=99.83 Aligned_cols=103 Identities=28% Similarity=0.391 Sum_probs=55.3
Q ss_pred CcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCC
Q 007962 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQ 507 (583)
Q Consensus 429 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~ 507 (583)
++.|+|++|.+.+.....+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555555433334555555555555555555554545555555555555555555 4555555555555555555
Q ss_pred CcCC-ccchhhcCC-CCCCEEeCCCC
Q 007962 508 NSLQ-SIPEGFKNL-TSLTELDLSDN 531 (583)
Q Consensus 508 n~l~-~l~~~l~~~-~~L~~L~l~~~ 531 (583)
|.++ .+|..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5555 445444332 34455555555
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=4.1e-10 Score=110.80 Aligned_cols=180 Identities=27% Similarity=0.331 Sum_probs=123.8
Q ss_pred ChhhhccCCccEEEcCCCCCCcCCccccCC-CCCcEEEccCCCCCC---CChhh---hh---cCCCCcEEecCCCCCccC
Q 007962 373 PSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKD---WPDAI---LT---SLSSLSCLKLDNNPLRQV 442 (583)
Q Consensus 373 ~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~-~~L~~L~l~~~~l~~---~~~~~---l~---~l~~L~~L~l~~~~~~~~ 442 (583)
|-.++.+.+|+.|.+.+|.+...- .+..+ .+|++|...+ .+.. +.... +. -...|...+.+.|+++.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 445666788999999998876521 11111 2344443322 1111 10000 00 123566777788887766
Q ss_pred CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCC
Q 007962 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 522 (583)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~ 522 (583)
... ++-++.|+.|+++.|++.+.. .+..|+.|++|+|+.|++..+|..-..-..|..|.+++|.++++ -++.++.+
T Consensus 180 D~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 180 DES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKS 255 (1096)
T ss_pred HHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhh
Confidence 543 777899999999999998876 58889999999999999998765433333499999999999988 46889999
Q ss_pred CCEEeCCCCCCCcCCCC-ccccccccceeeccCCCCc
Q 007962 523 LTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLR 558 (583)
Q Consensus 523 L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~ 558 (583)
|+.||++.|-|..-... ....+..|++|++.|||+-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999966633221 1112378999999999974
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=2.7e-09 Score=98.47 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCCCcEEEccCCC-CCCCChhhh-hcCCCCcEEecCCCC-CccCCCCcc-CCCCcccEEeCCCCccCC-C-CCCCCCCC
Q 007962 401 SCASLQTLILSRNK-IKDWPDAIL-TSLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASL-P-ENPPFSSL 474 (583)
Q Consensus 401 ~~~~L~~L~l~~~~-l~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~-~~~~~~~l 474 (583)
.+.+|+.++.+++. +++.....+ .++.+|+.+.+.+|+ +++.....+ .+++.|+.+++..+.... . ....-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45566666666652 222222222 345666666666655 222221111 345566666665553321 1 11122456
Q ss_pred CccceEeccccc-cccc-----ccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCC-CCC
Q 007962 475 PHLQELYLRRMQ-LREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDN-NIS 534 (583)
Q Consensus 475 ~~L~~L~l~~~~-l~~~-----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~-~l~ 534 (583)
+.|+.+.+++|. +++. ...-..+..|+.+.+++|... ..-+.+..++.|+++++-+| .++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 666676666663 3321 112234556777777777554 22245666677777777776 444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.51 E-value=1.8e-08 Score=78.21 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=62.2
Q ss_pred CccEEEcCCCcchhhhHh---hCCCCCCcEEEcCCCCCcccchhhh-CCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962 46 DLQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~~~---~~~~~~L~~L~L~~~~l~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l 121 (583)
.+-.++|++|.+-.+++. +.+..+|+.++|++|.+.+.|..|. .++..+.+++.+|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445556666655544432 3444555556666666665555443 344566666666666666666666666666666
Q ss_pred CCCcCCcCCcccccCCCCCEEEccccccCCCCc
Q 007962 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154 (583)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~ 154 (583)
+.|++...|..+..+.++-.|+..++.+..++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 666666555555555566666666665555543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.6e-07 Score=96.28 Aligned_cols=105 Identities=31% Similarity=0.390 Sum_probs=68.0
Q ss_pred cccEEeCCCCccCCCCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCC
Q 007962 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 529 (583)
Q Consensus 452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~ 529 (583)
.++.|++++|.+.+..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ .+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3566677777666666666666777777777777665 56666666777777777777766 566666677777777777
Q ss_pred CCCCC-cCCCCccccccccceeeccCCC
Q 007962 530 DNNIS-ALPPELGLLEPSLQALRLDGNP 556 (583)
Q Consensus 530 ~~~l~-~~~~~~~~~~~~L~~L~l~~~~ 556 (583)
+|+++ .+|..+.....++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 77666 4555443333345566666654
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.1e-08 Score=94.50 Aligned_cols=157 Identities=21% Similarity=0.123 Sum_probs=106.2
Q ss_pred cCCCCCcEEEccCC-CCCCCChh-hhhcCCCCcEEecCCCCC-ccCCCCc-cCCCCcccEEeCCCCc-cCCCCCCCC-CC
Q 007962 400 SSCASLQTLILSRN-KIKDWPDA-ILTSLSSLSCLKLDNNPL-RQVPSDG-FKDIPMLQILDLSYNI-ASLPENPPF-SS 473 (583)
Q Consensus 400 ~~~~~L~~L~l~~~-~l~~~~~~-~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~-~~ 473 (583)
..+.-+.++++..| .+++.... .-..+..|+.+..+++.- ++....+ -.++++|+.+.+..|+ +++.....+ .+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 34555666676665 44444322 224678999999998653 2211111 3568999999999885 566665555 35
Q ss_pred CCccceEeccccccc---ccccchhccCcccEEeCCCCcCC-cc-----chhhcCCCCCCEEeCCCC-CCCcCCCCcccc
Q 007962 474 LPHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQ-SI-----PEGFKNLTSLTELDLSDN-NISALPPELGLL 543 (583)
Q Consensus 474 l~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~n~l~-~l-----~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~ 543 (583)
++.|+.+++.+|... .+..-..+|+.|+++.+++|.+. +. ..+-.....|+.+.+++| .++...-+....
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 799999999999544 23333347999999999999644 21 223345678999999999 444444444455
Q ss_pred ccccceeeccCCC
Q 007962 544 EPSLQALRLDGNP 556 (583)
Q Consensus 544 ~~~L~~L~l~~~~ 556 (583)
+++|+.+++-+|+
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 6899999999986
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=3e-09 Score=104.91 Aligned_cols=199 Identities=23% Similarity=0.208 Sum_probs=126.1
Q ss_pred hhCCCCCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccccCCccccccC-cccEEEcCCCc--C----CcCCccc
Q 007962 63 DLRNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQ--L----KELPSSL 133 (583)
Q Consensus 63 ~~~~~~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~--~----~~~~~~~ 133 (583)
.+.-+++++++.+-...-. +-|-.+..++.|++|.+.+|.+... ..+..+. .|++|..+..- + ..-..++
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDI 157 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhcccc
Confidence 3444455555555333211 1144666788888888888877642 2233332 46666554331 0 0111112
Q ss_pred cc---CCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccc
Q 007962 134 GR---CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRL 209 (583)
Q Consensus 134 ~~---~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L 209 (583)
++ .-.|.+.+++.|.+..+...+.-++.|+.|++++|++.+.. ++..+++|++|+++.|.+..+|. ....+. |
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 11 12566677777777777777777888888888888888766 37888888888888888877664 222333 8
Q ss_pred cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCccc
Q 007962 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~ 266 (583)
+.|.+++|.++++ ..+.++.+|+.|+++.|-+... ...++.+..|+.|.+.||.+.
T Consensus 235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888887766 4577788888888888776633 234666777888888888664
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=9.4e-09 Score=79.72 Aligned_cols=138 Identities=21% Similarity=0.216 Sum_probs=95.2
Q ss_pred CcEEecCCCCCccCCC--CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCC
Q 007962 429 LSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506 (583)
Q Consensus 429 L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 506 (583)
+..++++.|++..+.. ..+.+...|+..++++|.+.+..+.--..+|..+.|++++|.++.+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 4445555555543322 11344455666677777666554444455678888888899999888888889999999999
Q ss_pred CCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhcc
Q 007962 507 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 567 (583)
Q Consensus 507 ~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 567 (583)
.|.+...|..+..+.+|-.|+..+|.+..+|-..+.. .....+++.+++++.-.+...++
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcccccc
Confidence 9998888888777888888999888888887775442 34445556666776665555544
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=5e-07 Score=56.78 Aligned_cols=40 Identities=40% Similarity=0.630 Sum_probs=29.1
Q ss_pred cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~ 84 (583)
++|++|++++|+|+++|..++++++|++|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577888888888888777788888888888888777653
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=5.5e-07 Score=78.68 Aligned_cols=176 Identities=20% Similarity=0.204 Sum_probs=104.5
Q ss_pred ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCccEEEccCCccc-cC
Q 007962 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI 106 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~~~~L~~L~L~~~~l~-~l 106 (583)
+..++.++||+|.|. .+...+++-.+|++.+++.-... .++ .++-+||+|+.++|++|.++ ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567888888888886 34456777788888888765333 222 35667888888888888776 33
Q ss_pred Ccc----ccccCcccEEEcCCCcCCcCC-----c---------ccccCCCCCEEEccccccCCCCcc-----cccCCCCc
Q 007962 107 PDE----IGSATALVKFDCSSNQLKELP-----S---------SLGRCLNLSDFKASNNCITSLPED-----LADCSKMS 163 (583)
Q Consensus 107 ~~~----~~~l~~L~~L~l~~~~~~~~~-----~---------~~~~~~~L~~L~l~~~~~~~l~~~-----l~~l~~L~ 163 (583)
|+. +.+-+.|+||.+++|.+.-+. + ....-|.|+++.+..|.+...+.. +..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 333 456777888888888765222 1 123456777777777766644322 22224677
Q ss_pred EEEecCCcceeech-----hhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcC
Q 007962 164 KLDVEGNKLTVLSN-----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRI 219 (583)
Q Consensus 164 ~L~l~~~~i~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~ 219 (583)
++.+..|.|..-.. .-+..+.+|+.|++++|.++. +...++..+.|+.|.+.+|-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 77777666652211 113344556666666665532 122333444455555555543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.3e-07 Score=82.09 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=55.6
Q ss_pred EEEcCCCcchhhhH--hh-CCCCCCcEEEcCCCCCcc---cchhhhCCCCccEEEccCCccccCCccc-cccCcccEEEc
Q 007962 49 KLILAHNNIEKLKE--DL-RNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (583)
Q Consensus 49 ~L~ls~~~i~~l~~--~~-~~~~~L~~L~L~~~~l~~---l~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~l 121 (583)
.+.+.++.|....+ .| ..+++++.+||.+|.|++ +.+...++|+|+.|+++.|.+......+ ....+|+.|.+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 34444554543332 23 356677777777777663 3334566777777777777655222222 24456666666
Q ss_pred CCCcCC--cCCcccccCCCCCEEEcccccc
Q 007962 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCI 149 (583)
Q Consensus 122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 149 (583)
.++.+. .....+..+|.+++|.++.|..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 666543 3334455666666666666633
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=7.5e-07 Score=55.96 Aligned_cols=37 Identities=43% Similarity=0.653 Sum_probs=17.2
Q ss_pred cccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc
Q 007962 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535 (583)
Q Consensus 499 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~ 535 (583)
+|++|++++|.++++|..+.++++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444555555555444444455555555555554443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=3.2e-07 Score=81.18 Aligned_cols=200 Identities=20% Similarity=0.198 Sum_probs=128.5
Q ss_pred CCCcEEEcCCCCCcccch--hh-hCCCCccEEEccCCcccc---CCccccccCcccEEEcCCCcCCcCCccc-ccCCCCC
Q 007962 68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS 140 (583)
Q Consensus 68 ~~L~~L~L~~~~l~~l~~--~~-~~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 140 (583)
..++.+-+.++.|....+ .| ..+.+++.+||.+|.++. +...+.++|.|++|+++.|++......+ .-..+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566677777775533 33 467899999999998884 4445778999999999999887544444 3567899
Q ss_pred EEEccccccC--CCCcccccCCCCcEEEecCCcce--eechhhhccc-ccCcEEEcCCCcCCcc---chhhcCCccccEE
Q 007962 141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASW-TMLTELIASKNLLNGM---PETIGSLSRLIRL 212 (583)
Q Consensus 141 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~i~--~~~~~~~~~~-~~L~~L~l~~~~~~~~---~~~l~~~~~L~~L 212 (583)
+|.+.++.+. .....+..++.+++|.++.|... .++....... +.++.+++..|..... -.--.-++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 9999888665 45556777888888888887543 2222222222 3566666666644211 1111235677777
Q ss_pred EccCCcCccc--CCCCcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCcccc
Q 007962 213 DLHQNRILSI--PSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 213 ~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~~ 267 (583)
-+..|.+... ......++.+.-|+++.+.+... .+.+..++.|..|.++++.+.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7777766533 23455566666777777776633 3456677777777777776653
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.24 E-value=2.4e-06 Score=69.94 Aligned_cols=120 Identities=18% Similarity=0.326 Sum_probs=47.5
Q ss_pred hhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcc
Q 007962 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQL 500 (583)
Q Consensus 422 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L 500 (583)
+|.++++|+.+.+.. .+..+...+|.++++|+.+++.++ +......+|..+++++.+.+.+ .+..++.. +..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555666666553 455555555666666666666553 4444455555655566666654 33333222 2235666
Q ss_pred cEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCcccccccc
Q 007962 501 RILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSL 547 (583)
Q Consensus 501 ~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 547 (583)
+.+++..+ ++.++. .+.++ .|+.+.+.+ .++.++...+..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666543 444432 24454 666666655 4555555555544444
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=2.9e-07 Score=80.36 Aligned_cols=193 Identities=21% Similarity=0.246 Sum_probs=98.6
Q ss_pred hhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc----cCCc-------cccccCcccEEEcCCCcC
Q 007962 63 DLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIPD-------EIGSATALVKFDCSSNQL 126 (583)
Q Consensus 63 ~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~ 126 (583)
.+.-+..+..++||+|.+.+ +...+.+-.+|+..++++-..+ .++. .+-+||+|+..++|.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457888899999998772 3446667778888888764322 2222 234555555555555554
Q ss_pred C-cCC----cccccCCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962 127 K-ELP----SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (583)
Q Consensus 127 ~-~~~----~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (583)
. +.| +.+++.+.|.+|.+++|.+..+... +++ .|.+|- ...-....|.|+.+....|++...+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la---------~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA---------YNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH---------HHhhhccCCCceEEEeccchhccCc
Confidence 4 222 1233444455555555444322100 000 000000 0000223455666666666665443
Q ss_pred h-----hhcCCccccEEEccCCcCc--cc----CCCCcCCCCCcEEEcCCCCCcc-----CchhhhCCCCCCEEEccCCc
Q 007962 201 E-----TIGSLSRLIRLDLHQNRIL--SI----PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQ 264 (583)
Q Consensus 201 ~-----~l~~~~~L~~L~l~~~~~~--~~----~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~ 264 (583)
. .+..-.+|+.+.+..|.+. ++ ...+..+.+|+.|++++|.++. +...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 2 1223346666666666655 11 1234556677777777766662 22334455566777776665
Q ss_pred cc
Q 007962 265 LK 266 (583)
Q Consensus 265 l~ 266 (583)
++
T Consensus 254 ls 255 (388)
T COG5238 254 LS 255 (388)
T ss_pred hc
Confidence 54
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.2e-06 Score=80.66 Aligned_cols=133 Identities=20% Similarity=0.363 Sum_probs=79.7
Q ss_pred HHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCC-CcchhhhHhhCCCCCCcEEEcCCC-CCcc
Q 007962 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIEKLKEDLRNLPLLTVLNVSHN-KLSE 82 (583)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-~~i~~l~~~~~~~~~L~~L~L~~~-~l~~ 82 (583)
++.++.++.|+++++.++.+| .+ ..+|+.|++++ +.++.+|+.+. ++|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~L---------------P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-VL---------------PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-CC---------------CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc
Confidence 445677777777777777777 23 23577777765 34555555442 46777777776 5555
Q ss_pred cchhhhCCCCccEEEccCCccc---cCCccccccCcccEEEcCCCcCC---cCCcccccCCCCCEEEccccccCCCCccc
Q 007962 83 LPAAIGELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCITSLPEDL 156 (583)
Q Consensus 83 l~~~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~l~~~l 156 (583)
+|. .|+.|++..+... .+|. +|+.|.+.++... .++. .-.++|++|++++|....+|..+
T Consensus 110 LP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~L 175 (426)
T PRK15386 110 LPE------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKL 175 (426)
T ss_pred ccc------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccc
Confidence 543 4666666654432 3333 3556665432211 1111 12258999999998876666554
Q ss_pred ccCCCCcEEEecCCc
Q 007962 157 ADCSKMSKLDVEGNK 171 (583)
Q Consensus 157 ~~l~~L~~L~l~~~~ 171 (583)
. .+|+.|.++.+.
T Consensus 176 P--~SLk~L~ls~n~ 188 (426)
T PRK15386 176 P--ESLQSITLHIEQ 188 (426)
T ss_pred c--ccCcEEEecccc
Confidence 4 689999987653
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.21 E-value=2.8e-06 Score=71.13 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=45.6
Q ss_pred cEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccc-cCcccEEEcCCCcC
Q 007962 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQL 126 (583)
Q Consensus 48 ~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~-l~~L~~L~l~~~~~ 126 (583)
+.++|++.++..+...=.-......+||++|.+..+ ..|..++.|..|.+.+|+++.+...+.. +++|+.|.+.+|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 445555554443322001122334455555554433 2344555555555555555544443332 34455555555544
Q ss_pred CcCC--cccccCCCCCEEEccccccC
Q 007962 127 KELP--SSLGRCLNLSDFKASNNCIT 150 (583)
Q Consensus 127 ~~~~--~~~~~~~~L~~L~l~~~~~~ 150 (583)
..+. .-+..||+|++|.+-+|.+.
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchh
Confidence 4332 22344455555555554444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=9.4e-06 Score=77.55 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=100.2
Q ss_pred hhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCC-CCCCCChhhhhcCCCCcEEecCCC-CCccCCCCccCCCCcc
Q 007962 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPML 453 (583)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L 453 (583)
+..+..++.|++++|.++.+|. -..+|++|.+++| .++..+. .+ .++|++|++++| .+..++ ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc-------ccc
Confidence 3446789999999999998883 2347999999986 4444443 22 368999999998 444332 468
Q ss_pred cEEeCCCCccCCCCCCCCCCC-CccceEeccccc-cc--ccccchhcc-CcccEEeCCCCcCCccchhhcCCCCCCEEeC
Q 007962 454 QILDLSYNIASLPENPPFSSL-PHLQELYLRRMQ-LR--EAPTDILRL-QQLRILDLSQNSLQSIPEGFKNLTSLTELDL 528 (583)
Q Consensus 454 ~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~-l~--~~~~~~~~~-~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l 528 (583)
+.|+++++.... +..+ ++|+.|.+.+++ .. .++. .+ ++|++|++++|....+|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 888887654432 3334 478888886543 21 1111 12 589999999998777776554 69999999
Q ss_pred CCCCCC--cCCCCccccccccceeeccCC
Q 007962 529 SDNNIS--ALPPELGLLEPSLQALRLDGN 555 (583)
Q Consensus 529 ~~~~l~--~~~~~~~~~~~~L~~L~l~~~ 555 (583)
+.+... .++... .++++ .|++.+|
T Consensus 185 s~n~~~sLeI~~~s--LP~nl-~L~f~n~ 210 (426)
T PRK15386 185 HIEQKTTWNISFEG--FPDGL-DIDLQNS 210 (426)
T ss_pred cccccccccCcccc--ccccc-Eechhhh
Confidence 876322 223222 22445 6666665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.07 E-value=1.1e-05 Score=66.09 Aligned_cols=121 Identities=18% Similarity=0.354 Sum_probs=55.1
Q ss_pred cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCcc
Q 007962 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (583)
Q Consensus 398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 477 (583)
.+..+.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++|+.+.+.+ .+......+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455666666666653 455555566666767777777653 6666666677776677777754 4444444556667777
Q ss_pred ceEecccccccccccch-hccCcccEEeCCCCcCCccc-hhhcCCCCCC
Q 007962 478 QELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIP-EGFKNLTSLT 524 (583)
Q Consensus 478 ~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~ 524 (583)
+.+.+..+ +..++... .++ .|+.+.+.. .++.++ ..|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777554 44443333 344 777777765 444443 3366666654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=1.5e-06 Score=90.36 Aligned_cols=108 Identities=29% Similarity=0.319 Sum_probs=56.1
Q ss_pred cCCCCcEEecCCCCCccCC-CCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc--cccchhccCccc
Q 007962 425 SLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLR 501 (583)
Q Consensus 425 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~ 501 (583)
.+|+|+.|.+++-.+..-. .....++|+|..||+|++.++.. ..++.+++|+.|.+.+-.+.. --.+++++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3455555555543332111 01134455555555555555544 235556666666665555542 123456677777
Q ss_pred EEeCCCCcCCcc-------chhhcCCCCCCEEeCCCCCCC
Q 007962 502 ILDLSQNSLQSI-------PEGFKNLTSLTELDLSDNNIS 534 (583)
Q Consensus 502 ~L~l~~n~l~~l-------~~~l~~~~~L~~L~l~~~~l~ 534 (583)
.||+|....... -++-..+|.|+.||.+|+.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777776643311 122344677777777777665
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=5.6e-06 Score=86.15 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=42.6
Q ss_pred ccCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc--CCccccccCcccEE
Q 007962 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKF 119 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L 119 (583)
+|.|+.|.+++-.+. ++...++++|+|+.||+|+++++.+ ..++++++|+.|.+.+=.+.. -...+..+++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455666665554333 2333455566666666666665555 455556666666555544431 11234455555666
Q ss_pred EcCCCcC
Q 007962 120 DCSSNQL 126 (583)
Q Consensus 120 ~l~~~~~ 126 (583)
|+|....
T Consensus 226 DIS~~~~ 232 (699)
T KOG3665|consen 226 DISRDKN 232 (699)
T ss_pred ecccccc
Confidence 5555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=9.9e-06 Score=67.90 Aligned_cols=127 Identities=24% Similarity=0.273 Sum_probs=75.2
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
=+++++.+.++..+...=.-..+...+|+++|.+..... |..++.|..|.+.+|+|+.+...--.-+++|..|.+.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 345666665544322211122456677777777665544 566777777777777777776654444567777777777
Q ss_pred ccCCCC-CCCCCCCCccceEecccccccccc----cchhccCcccEEeCCCCcC
Q 007962 462 IASLPE-NPPFSSLPHLQELYLRRMQLREAP----TDILRLQQLRILDLSQNSL 510 (583)
Q Consensus 462 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~~~L~~L~l~~n~l 510 (583)
++..++ ...+..||+|++|.+-+|..+.-. ..+..+|+|++||+.+-..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 665432 223566677777777777665221 2344566777777666543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=4.3e-05 Score=67.13 Aligned_cols=105 Identities=28% Similarity=0.301 Sum_probs=58.8
Q ss_pred cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC--ccCCCCCCCCCCCCccceEeccccccccc--ccchhccCcc
Q 007962 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREA--PTDILRLQQL 500 (583)
Q Consensus 425 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~L 500 (583)
....|+.+.+.++.++.+.. |..+++|++|.+++| ++..........+|+|+++++++|++..+ ...+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555555554432 566677777777777 44333222334457777777777766632 1234456667
Q ss_pred cEEeCCCCcCCccc----hhhcCCCCCCEEeCCCC
Q 007962 501 RILDLSQNSLQSIP----EGFKNLTSLTELDLSDN 531 (583)
Q Consensus 501 ~~L~l~~n~l~~l~----~~l~~~~~L~~L~l~~~ 531 (583)
.+|++.+|..+.+. ..|.-+++|++|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 77777777555331 22455666666654443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=1.6e-05 Score=70.08 Aligned_cols=97 Identities=25% Similarity=0.256 Sum_probs=55.8
Q ss_pred cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCc--cccccCcccEEEcC
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS 122 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~l~ 122 (583)
.++++|++-+|.+.+|. ...+|+.|++|.||-|.|+++ ..+..|.+|+.|.|..|.|..+.+ -+.++++|+.|.+.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45566666666666552 455666666666666666655 445666666666666666654432 24566677777776
Q ss_pred CCcCC-cCC-----cccccCCCCCEEE
Q 007962 123 SNQLK-ELP-----SSLGRCLNLSDFK 143 (583)
Q Consensus 123 ~~~~~-~~~-----~~~~~~~~L~~L~ 143 (583)
.|+.. .-+ ..+..+|+|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 66533 111 1344555555554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00019 Score=63.23 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=41.2
Q ss_pred CCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCC--ccc-cCCccccccCcccEEEcCCCcCCcCC--cccccCCCC
Q 007962 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNL 139 (583)
Q Consensus 65 ~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~--~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L 139 (583)
..+..|+.+.+.+..++++ ..+..+++|++|.++.| +.. .++.....+++|+++++++|++..+. .-+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3344455555555555444 34455566666666666 322 34334444566666666666554321 223344444
Q ss_pred CEEEcccccc
Q 007962 140 SDFKASNNCI 149 (583)
Q Consensus 140 ~~L~l~~~~~ 149 (583)
..|++..|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 4555544433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.9e-05 Score=69.53 Aligned_cols=98 Identities=23% Similarity=0.209 Sum_probs=60.6
Q ss_pred CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh--hcCCCCCCEEeC
Q 007962 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--FKNLTSLTELDL 528 (583)
Q Consensus 451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l 528 (583)
.+.+.|++.+|.++++.. +..+|.|+.|.|+=|.|+++ ..+..|+.|+.|++..|.|.++.+. +.++++|+.|-|
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 455667777777666543 45667777777777777766 4566777777777777777665433 567777777777
Q ss_pred CCCCCC-cCCCC----ccccccccceee
Q 007962 529 SDNNIS-ALPPE----LGLLEPSLQALR 551 (583)
Q Consensus 529 ~~~~l~-~~~~~----~~~~~~~L~~L~ 551 (583)
..|.=. ..+++ ....+|+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 766333 22222 122236666654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=8.2e-05 Score=76.57 Aligned_cols=183 Identities=27% Similarity=0.198 Sum_probs=82.5
Q ss_pred ccccceeecCCCCCcc---CChhhhccCCccEEEcCCC-C-CCcC----CccccCCCCCcEEEccCCC-CCCCChhhhhc
Q 007962 356 SVTSKELSLEGMNLSA---IPSEIWEAGEITKLDLSRN-S-IQEL----PPELSSCASLQTLILSRNK-IKDWPDAILTS 425 (583)
Q Consensus 356 ~~~l~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~-~-l~~l----~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~ 425 (583)
...++.+.+.++.... +......++.|++++++++ . .... ......+++|+.++++.+. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 3445555555543221 3334445566666666652 1 1111 1123445666666666655 44444333332
Q ss_pred -CCCCcEEecCCCC-CccCCCC-ccCCCCcccEEeCCCCccC-CCC-CCCCCCCCccceEecccccccccccchhccCcc
Q 007962 426 -LSSLSCLKLDNNP-LRQVPSD-GFKDIPMLQILDLSYNIAS-LPE-NPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500 (583)
Q Consensus 426 -l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L 500 (583)
|++|+.|.+.+|. +++.... ...++++|++|+++.|... +.. ......+++++.|.+..+. .++.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c~~l 337 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GCPSL 337 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CCccH
Confidence 5666666655555 3332211 1244556666666655332 100 0001223444443322221 13344
Q ss_pred cEEeCCCCcC---Ccc-chhhcCCCCCCEEeCCCCCCCcCC-CCcccccccc
Q 007962 501 RILDLSQNSL---QSI-PEGFKNLTSLTELDLSDNNISALP-PELGLLEPSL 547 (583)
Q Consensus 501 ~~L~l~~n~l---~~l-~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L 547 (583)
+.+.+.++.- ..+ ...+..++.++.+.+.++.+.... ......|+.|
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4444444322 111 123577888888888888644332 2333334444
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.75 E-value=3.7e-05 Score=65.91 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=77.6
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~ 91 (583)
+++|++--.+..+|..-. ...+..++||++.+++..+...|+.++.|..+|++.+.+..+|..+....
T Consensus 21 ~tc~~s~s~~s~~~v~ei------------~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~ 88 (326)
T KOG0473|consen 21 ETCDLSLSELSEIPVREI------------ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR 88 (326)
T ss_pred cccCCCHHHhcccchhhh------------hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHH
Confidence 455555555556664322 22456788888888888877778888888888888888888888888888
Q ss_pred CccEEEccCCccccCCccccccCcccEEEcCCCcCC
Q 007962 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127 (583)
Q Consensus 92 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~ 127 (583)
.+..+++..|+.+..|.++.+.++++++++.++.+.
T Consensus 89 e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 89 ETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 888888888888888888888888888888777654
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.00057 Score=70.36 Aligned_cols=191 Identities=19% Similarity=0.169 Sum_probs=102.5
Q ss_pred ccCccEEEcCCC--cchhh----hHhhCCCCCCcEEEcCCCC-Cccc--chhhhCCCCccEEEccCCc-cc--cCCcccc
Q 007962 44 AVDLQKLILAHN--NIEKL----KEDLRNLPLLTVLNVSHNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIG 111 (583)
Q Consensus 44 ~~~L~~L~ls~~--~i~~l----~~~~~~~~~L~~L~L~~~~-l~~l--~~~~~~~~~L~~L~L~~~~-l~--~l~~~~~ 111 (583)
+++|+.|+++++ .+... ......+++|+.++++++. +++. ......|++|++|.+.+|. ++ .+-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 678888888763 22211 1245667888888888887 5532 2223348888888877775 55 3334456
Q ss_pred ccCcccEEEcCCCcCC---cCCcccccCCCCCEEEcccccc----C--------------CCCcccccCCCCcEEEecCC
Q 007962 112 SATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCI----T--------------SLPEDLADCSKMSKLDVEGN 170 (583)
Q Consensus 112 ~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~----~--------------~l~~~l~~l~~L~~L~l~~~ 170 (583)
++++|++|++++|... .+.....++++++.|.+..... + ...-....+++++.+.+..+
T Consensus 293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~ 372 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC 372 (482)
T ss_pred hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence 6888888888877653 1222344566666655443321 1 00112455666666666665
Q ss_pred cceeec-hhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccC--CCCcC-CCCCcEEEcCCCCCc
Q 007962 171 KLTVLS-NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISG-CCSLAEFYMGNNALS 243 (583)
Q Consensus 171 ~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~L~~L~l~~~~~~ 243 (583)
...... ...+.+++.|+ ..+... ......++.|++..+...... ..... +..+..+.+.++...
T Consensus 373 ~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 373 GISDLGLELSLRGCPNLT-ESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred hccCcchHHHhcCCcccc-hHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 533333 23344455442 111111 111222778888887644221 11111 556666666665433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.0025 Score=33.06 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=10.0
Q ss_pred ccEEEcCCCcchhhhHhhC
Q 007962 47 LQKLILAHNNIEKLKEDLR 65 (583)
Q Consensus 47 L~~L~ls~~~i~~l~~~~~ 65 (583)
|++||+++|+++.+|..|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0056 Score=31.72 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=5.9
Q ss_pred ccEEEccCCccccCC
Q 007962 93 LKSLDVSFNSIMKIP 107 (583)
Q Consensus 93 L~~L~L~~~~l~~l~ 107 (583)
|++|++++|.++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 334444444333333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.46 E-value=0.00025 Score=70.83 Aligned_cols=180 Identities=24% Similarity=0.254 Sum_probs=109.1
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchh-----hhHhhCCC-CCCcEEEcCCCCCc---
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS--- 81 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-----l~~~~~~~-~~L~~L~L~~~~l~--- 81 (583)
+..+++.++.+++-+...... .+.....|..|++++|.+.. +.+.+... ..+++|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 566677777777555444322 23335667777777777762 22334443 55666777777666
Q ss_pred --ccchhhhCCCCccEEEccCCccc-----cCCcccc----ccCcccEEEcCCCcCCcC-----CcccccCCC-CCEEEc
Q 007962 82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKEL-----PSSLGRCLN-LSDFKA 144 (583)
Q Consensus 82 --~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l 144 (583)
.+.+.+....+++.++++.|.+. .++..+. ...++++|.+++|.++.. ...+...+. +..|++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 34456666777777777777653 1222333 356678888887776521 123444454 666777
Q ss_pred cccccCC-----CCcccccC-CCCcEEEecCCcceeechh----hhcccccCcEEEcCCCcCCc
Q 007962 145 SNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG 198 (583)
Q Consensus 145 ~~~~~~~-----l~~~l~~l-~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~ 198 (583)
..|.+.+ +.+.+..+ ..++++++..|.+..-... .+..+++++.+.++.+.+..
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7776662 23344555 6778888888887743332 24556788888888887753
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.20 E-value=0.00046 Score=59.43 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=40.0
Q ss_pred hCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEE
Q 007962 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (583)
Q Consensus 64 ~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 143 (583)
+..+...+.||++.+++..+...|+-+..|..|+++.|.+..+|.++.+...+.+++.+.|..+..|.++...+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34444455555555544444444444444444555544444444444444444444444444444444444444444444
Q ss_pred cccc
Q 007962 144 ASNN 147 (583)
Q Consensus 144 l~~~ 147 (583)
..++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 4444
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.13 E-value=0.015 Score=27.85 Aligned_cols=9 Identities=56% Similarity=0.774 Sum_probs=2.9
Q ss_pred CEEeCCCCC
Q 007962 524 TELDLSDNN 532 (583)
Q Consensus 524 ~~L~l~~~~ 532 (583)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.08 E-value=0.0003 Score=70.25 Aligned_cols=175 Identities=28% Similarity=0.340 Sum_probs=126.7
Q ss_pred CccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCC-CCccEEEccCCccc-----cCCcc
Q 007962 46 DLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGEL-HMLKSLDVSFNSIM-----KIPDE 109 (583)
Q Consensus 46 ~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~-~~L~~L~L~~~~l~-----~l~~~ 109 (583)
.+..+.|.+|.+. .+...+...+.|+.|++++|.+.. +...+... ..|++|.+..|.++ .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3788889988887 344568899999999999999882 22234443 56788888888777 35556
Q ss_pred ccccCcccEEEcCCCcCC-----cCCcccc----cCCCCCEEEccccccCC-----CCcccccCCC-CcEEEecCCccee
Q 007962 110 IGSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTV 174 (583)
Q Consensus 110 ~~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~-----l~~~l~~l~~-L~~L~l~~~~i~~ 174 (583)
+.....++.++++.|.+. .++..+. ...++++|++..|.++. +...+...++ +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 777889999999999875 2223333 47789999999998772 2234555566 7779998888775
Q ss_pred echhh----hccc-ccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCc
Q 007962 175 LSNNL----IASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (583)
Q Consensus 175 ~~~~~----~~~~-~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~ 220 (583)
..... +... ..+++++++.|.+.. +...+..++.++.+.+.++.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 42221 3334 567899999998853 4456677889999999999876
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.43 E-value=0.033 Score=30.23 Aligned_cols=19 Identities=58% Similarity=0.955 Sum_probs=8.9
Q ss_pred CCCCEEeCCCCCCCcCCCC
Q 007962 521 TSLTELDLSDNNISALPPE 539 (583)
Q Consensus 521 ~~L~~L~l~~~~l~~~~~~ 539 (583)
++|++|++++|+|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444444444444444443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.43 E-value=0.033 Score=30.23 Aligned_cols=19 Identities=58% Similarity=0.955 Sum_probs=8.9
Q ss_pred CCCCEEeCCCCCCCcCCCC
Q 007962 521 TSLTELDLSDNNISALPPE 539 (583)
Q Consensus 521 ~~L~~L~l~~~~l~~~~~~ 539 (583)
++|++|++++|+|+.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3444444444444444443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0052 Score=52.08 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=35.8
Q ss_pred ccEEeCCCCccCCCCCCCCCCCCccceEecccc-ccccc-ccch-hccCcccEEeCCCC-cCCc-cchhhcCCCCCCEEe
Q 007962 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREA-PTDI-LRLQQLRILDLSQN-SLQS-IPEGFKNLTSLTELD 527 (583)
Q Consensus 453 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~-~~~~~L~~L~l~~n-~l~~-l~~~l~~~~~L~~L~ 527 (583)
++.+|-+++.+...+.+.+..+++++.|.+.+| .+... ...+ .-.++|+.|++++| ++++ --.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444555555554444444555555555555555 22210 0000 12355555555555 3441 113455555555555
Q ss_pred CCC
Q 007962 528 LSD 530 (583)
Q Consensus 528 l~~ 530 (583)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.44 E-value=0.11 Score=28.13 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred cccceeeccCCCCccchhHHhc
Q 007962 545 PSLQALRLDGNPLRSIRRTILD 566 (583)
Q Consensus 545 ~~L~~L~l~~~~~~~~~~~~~~ 566 (583)
++|+.|++++|.++.++..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6899999999999999998885
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.44 E-value=0.11 Score=28.13 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred cccceeeccCCCCccchhHHhc
Q 007962 545 PSLQALRLDGNPLRSIRRTILD 566 (583)
Q Consensus 545 ~~L~~L~l~~~~~~~~~~~~~~ 566 (583)
++|+.|++++|.++.++..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6899999999999999998885
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=0.012 Score=50.05 Aligned_cols=82 Identities=23% Similarity=0.089 Sum_probs=44.3
Q ss_pred CCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-Ccc-CCCCcccEEeCCCC-ccCCCCCCCCCCCCccce
Q 007962 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479 (583)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~ 479 (583)
..++.+|-+++.+.......+.+++.++.+.+.+|.-.+.-. +.+ ...++|+.|++++| .|++.+...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 346777777777777777777777778877777765332100 001 12345555555544 344444334444444444
Q ss_pred Eeccc
Q 007962 480 LYLRR 484 (583)
Q Consensus 480 L~l~~ 484 (583)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 44433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.25 E-value=0.28 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=11.1
Q ss_pred cccceeeccCCCCccchhH
Q 007962 545 PSLQALRLDGNPLRSIRRT 563 (583)
Q Consensus 545 ~~L~~L~l~~~~~~~~~~~ 563 (583)
++|+.|++++|+|+.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 5677777777776654443
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.97 E-value=0.81 Score=24.61 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=12.2
Q ss_pred CCCCEEeCCCCCCCcCCC
Q 007962 521 TSLTELDLSDNNISALPP 538 (583)
Q Consensus 521 ~~L~~L~l~~~~l~~~~~ 538 (583)
++|++|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356677777777776665
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.12 E-value=1.6 Score=23.61 Aligned_cols=16 Identities=56% Similarity=0.787 Sum_probs=9.1
Q ss_pred CCCCEEeCCCCCCCcC
Q 007962 521 TSLTELDLSDNNISAL 536 (583)
Q Consensus 521 ~~L~~L~l~~~~l~~~ 536 (583)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666655543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.90 E-value=1.9 Score=43.04 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=17.5
Q ss_pred CCCccceEeccccccccc---ccchhccCcccEEeCCCC
Q 007962 473 SLPHLQELYLRRMQLREA---PTDILRLQQLRILDLSQN 508 (583)
Q Consensus 473 ~l~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~n 508 (583)
+.|.+..++|++|++..+ .......|.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345556666666655533 111123455555555555
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.88 E-value=1.7 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=6.2
Q ss_pred cccceeeccCCC
Q 007962 545 PSLQALRLDGNP 556 (583)
Q Consensus 545 ~~L~~L~l~~~~ 556 (583)
++|+.|++++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555553
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.57 E-value=3.8 Score=22.53 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=13.2
Q ss_pred cccceeeccCCCCccchhH
Q 007962 545 PSLQALRLDGNPLRSIRRT 563 (583)
Q Consensus 545 ~~L~~L~l~~~~~~~~~~~ 563 (583)
++|++|+|++|.|+.-+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 5678888888887655433
No 90
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=64.01 E-value=4.5 Score=22.30 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.6
Q ss_pred hceeeccCCcCCCCChhh
Q 007962 11 SGSLNLSNRSLRDVPNEV 28 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (583)
-.+++|++.+++++|.++
T Consensus 10 ~~~V~C~~~~L~~vP~~l 27 (28)
T PF01462_consen 10 GLTVDCSGRGLTAVPSDL 27 (28)
T ss_dssp TTEEEETTSS-SSS-STS
T ss_pred CCEeECCCCCCCccCCCC
Confidence 467899999999999865
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.90 E-value=80 Score=31.54 Aligned_cols=81 Identities=22% Similarity=0.126 Sum_probs=40.2
Q ss_pred hceeeccCCcCC-CCChhhhhcccccCCCCCcccccCccEEEcCCCcch--hhhH--hhCCCCCCcEEEcCCCCCc----
Q 007962 11 SGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKE--DLRNLPLLTVLNVSHNKLS---- 81 (583)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~--~l~~--~~~~~~~L~~L~L~~~~l~---- 81 (583)
++++|++.+... ++|..+...-. -.-++.++.++..+. .+.+ .++.-++|...+++.+...
T Consensus 216 lteldls~n~~Kddip~~~n~~a~----------~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg 285 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAG----------TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKG 285 (553)
T ss_pred ccccccccCCCCccchhHHHHhhh----------hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccc
Confidence 456666666444 66665533211 124556666666554 2221 2344556666666665433
Q ss_pred -ccc----hhhhCCCCccEEEccCCc
Q 007962 82 -ELP----AAIGELHMLKSLDVSFNS 102 (583)
Q Consensus 82 -~l~----~~~~~~~~L~~L~L~~~~ 102 (583)
.++ +.|+.-+++ +|++..+.
T Consensus 286 ~Egg~~~k~~fS~~~sg-hln~~~~~ 310 (553)
T KOG4242|consen 286 EEGGGAEKDTFSPDPSG-HLNSRPRY 310 (553)
T ss_pred cccccccccccCcCccc-cccccccc
Confidence 121 134444555 66665553
No 92
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=46.71 E-value=12 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.0
Q ss_pred hceeeccCCcCCCCChhhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYK 30 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (583)
-.+++|++.+++++|.++..
T Consensus 10 ~~~V~C~~~~L~~vP~~iP~ 29 (33)
T smart00013 10 GTAVDCSGRGLTEVPLDLPP 29 (33)
T ss_pred CCEeEeCCCCcCccCCCCCc
Confidence 35789999999999998864
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.78 E-value=14 Score=37.29 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=44.2
Q ss_pred cCCCCcccEEeCCCCccCCCCCC-CC-CCCCccceEecccc--cccccccchh--ccCcccEEeCCCCcCC
Q 007962 447 FKDIPMLQILDLSYNIASLPENP-PF-SSLPHLQELYLRRM--QLREAPTDIL--RLQQLRILDLSQNSLQ 511 (583)
Q Consensus 447 ~~~~~~L~~L~l~~~~~~~~~~~-~~-~~l~~L~~L~l~~~--~l~~~~~~~~--~~~~L~~L~l~~n~l~ 511 (583)
-.+.+.+..+++++|++..+... ++ ...|+|+.|+|++| .+... .++. ...-|++|-+.||.+.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 45678889999999988654321 12 34689999999999 44432 2233 3456889999999765
No 94
>PRK09718 hypothetical protein; Validated
Probab=27.45 E-value=1.1e+02 Score=30.66 Aligned_cols=15 Identities=0% Similarity=-0.002 Sum_probs=8.1
Q ss_pred CcccEEeCCCCcCCc
Q 007962 498 QQLRILDLSQNSLQS 512 (583)
Q Consensus 498 ~~L~~L~l~~n~l~~ 512 (583)
+.|+.+|++.|.+.+
T Consensus 228 T~LkgVDFSdC~Le~ 242 (512)
T PRK09718 228 VRISTGNFKDCITEQ 242 (512)
T ss_pred CcCCCcccccccccc
Confidence 455555555555543
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.85 E-value=2.4e+02 Score=28.45 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=19.5
Q ss_pred ccEEEcCCCCCCcCC----ccccCCCCCcEEEccCCCCCCC
Q 007962 382 ITKLDLSRNSIQELP----PELSSCASLQTLILSRNKIKDW 418 (583)
Q Consensus 382 L~~L~l~~~~l~~l~----~~l~~~~~L~~L~l~~~~l~~~ 418 (583)
++.+.++.|.+..-+ .....-+.+.+|++++|.+.+.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDG 455 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccC
Confidence 455555555544311 1233445666677777666654
Done!