Query 007962
Match_columns 583
No_of_seqs 244 out of 2926
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 14:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-51 5.3E-56 433.3 38.6 495 11-559 13-559 (606)
2 3t6q_A CD180 antigen; protein- 100.0 1.9E-50 6.6E-55 425.0 42.4 498 11-559 14-561 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-49 1.3E-53 420.6 48.9 533 11-565 6-604 (680)
4 3rgz_A Protein brassinosteroid 100.0 1.1E-50 3.8E-55 435.7 36.1 503 6-560 97-719 (768)
5 3rgz_A Protein brassinosteroid 100.0 5.2E-50 1.8E-54 430.5 38.6 532 9-566 77-701 (768)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-48 1.5E-52 412.4 48.1 507 47-567 6-582 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-48 2E-52 406.1 33.7 478 9-535 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 8E-47 2.7E-51 397.5 40.1 481 47-565 14-543 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 5.6E-47 1.9E-51 396.2 33.2 493 11-559 9-532 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 3E-45 1E-49 381.0 37.1 483 9-559 5-511 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-45 6.2E-50 399.3 36.0 486 12-559 7-561 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 5.6E-44 1.9E-48 373.4 31.5 475 9-535 28-532 (570)
13 4g8a_A TOLL-like receptor 4; l 100.0 8.6E-43 2.9E-47 369.9 40.8 508 12-579 34-595 (635)
14 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-43 1.8E-47 361.1 29.9 446 12-559 3-482 (520)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-42 4.3E-47 358.4 29.5 424 9-534 21-481 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-42 7.1E-47 375.3 31.2 468 9-534 24-560 (844)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-41 4.1E-46 353.8 31.8 450 9-534 26-510 (549)
18 4eco_A Uncharacterized protein 100.0 4.7E-42 1.6E-46 360.1 27.8 431 45-564 81-606 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 9.3E-42 3.2E-46 362.9 30.4 434 45-559 323-865 (876)
20 4eco_A Uncharacterized protein 100.0 8.4E-42 2.9E-46 358.2 26.4 438 9-537 81-603 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 5.5E-41 1.9E-45 356.9 32.8 436 68-567 323-849 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-41 2.1E-45 348.3 28.3 449 12-559 34-511 (562)
23 1jl5_A Outer protein YOPM; leu 100.0 1.7E-38 5.7E-43 318.4 27.0 405 44-560 10-431 (454)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-37 5E-42 329.7 34.1 477 9-534 52-580 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-37 4.1E-42 323.6 26.7 424 9-534 52-510 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 5.8E-37 2E-41 307.2 26.4 404 8-534 10-429 (454)
27 1o6v_A Internalin A; bacterial 100.0 5.4E-35 1.9E-39 296.2 33.8 350 89-539 44-393 (466)
28 1o6v_A Internalin A; bacterial 100.0 6.7E-35 2.3E-39 295.5 33.8 347 44-491 45-391 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 4.7E-35 1.6E-39 296.8 28.8 380 11-511 12-408 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.2E-35 1.8E-39 293.3 26.9 352 41-516 38-393 (457)
31 3v47_A TOLL-like receptor 5B a 100.0 5.2E-34 1.8E-38 289.1 32.4 379 94-559 13-409 (455)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-33 5.9E-38 282.3 29.5 259 5-310 38-298 (457)
33 4fmz_A Internalin; leucine ric 100.0 4.4E-32 1.5E-36 264.4 31.8 307 156-559 40-347 (347)
34 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 265.3 29.6 305 42-440 41-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 3.1E-31 1.1E-35 262.5 27.1 305 136-534 44-352 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 1.1E-30 3.6E-35 258.7 28.1 309 158-560 43-354 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 1.6E-30 5.6E-35 264.7 26.5 314 71-488 14-333 (477)
38 2id5_A Lingo-1, leucine rich r 100.0 5.9E-30 2E-34 260.6 28.9 313 117-511 14-333 (477)
39 3oja_B Anopheles plasmodium-re 100.0 6E-30 2.1E-34 267.0 26.9 305 136-534 50-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1.7E-29 5.7E-34 263.6 28.2 306 112-511 49-358 (597)
41 1xku_A Decorin; proteoglycan, 100.0 5.4E-29 1.9E-33 240.4 25.4 280 9-308 31-329 (330)
42 1xku_A Decorin; proteoglycan, 100.0 4.6E-28 1.6E-32 234.0 27.7 288 184-556 31-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 8E-29 2.7E-33 239.4 21.9 278 10-308 34-330 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-28 1.2E-32 234.9 24.9 287 184-556 33-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-30 5.3E-35 264.1 8.6 290 9-310 3-353 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-30 3.9E-35 265.1 5.7 301 231-561 86-443 (461)
47 3ogk_B Coronatine-insensitive 100.0 1.7E-29 5.8E-34 265.0 5.3 416 61-554 66-547 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.9 5.5E-26 1.9E-30 234.3 27.4 259 9-312 40-298 (622)
49 2z66_A Variable lymphocyte rec 99.9 2.6E-26 8.9E-31 219.2 19.6 241 11-266 9-261 (306)
50 2z80_A TOLL-like receptor 2, v 99.9 1.4E-26 4.6E-31 225.8 17.2 266 9-311 31-314 (353)
51 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-25 1.8E-29 226.9 29.5 260 184-536 40-299 (622)
52 1ogq_A PGIP-2, polygalacturona 99.9 1E-26 3.5E-31 221.9 15.1 241 45-286 50-302 (313)
53 3ogk_B Coronatine-insensitive 99.9 2.6E-28 8.8E-33 256.0 3.7 409 44-531 72-548 (592)
54 4fcg_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 219.0 18.6 222 45-267 81-315 (328)
55 4fcg_A Uncharacterized protein 99.9 3.1E-26 1.1E-30 219.8 17.0 224 9-245 81-316 (328)
56 1ogq_A PGIP-2, polygalacturona 99.9 3E-26 1E-30 218.6 16.7 242 68-310 50-303 (313)
57 2z66_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 212.3 21.4 246 257-559 11-262 (306)
58 2p1m_B Transport inhibitor res 99.9 1.4E-28 4.7E-33 258.3 -2.8 153 378-531 370-541 (594)
59 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.6E-30 212.5 16.7 218 12-266 14-238 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 8E-25 2.8E-29 219.8 21.6 239 11-266 45-292 (440)
61 3zyj_A Leucine-rich repeat-con 99.9 3.9E-24 1.3E-28 214.8 26.6 240 276-581 65-309 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 219.7 22.0 239 11-266 56-303 (452)
63 2z80_A TOLL-like receptor 2, v 99.9 2.1E-25 7.3E-30 217.3 16.4 272 229-561 30-317 (353)
64 3zyi_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 214.4 26.5 223 276-558 76-303 (452)
65 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-24 5E-29 204.7 20.2 218 47-289 13-239 (285)
66 2p1m_B Transport inhibitor res 99.9 2.3E-27 7.8E-32 249.0 -0.4 129 379-508 396-541 (594)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7.3E-25 2.5E-29 209.7 15.1 215 44-266 33-250 (317)
68 1wwl_A Monocyte differentiatio 99.9 2.6E-25 8.9E-30 212.3 10.6 246 39-289 37-310 (312)
69 2z62_A TOLL-like receptor 4, v 99.9 2.1E-23 7E-28 195.8 20.6 217 12-243 10-237 (276)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-24 4.2E-29 208.1 12.2 255 45-307 10-271 (317)
71 2o6q_A Variable lymphocyte rec 99.9 8.4E-23 2.9E-27 190.7 22.6 200 358-559 17-219 (270)
72 1wwl_A Monocyte differentiatio 99.9 1.2E-24 4.3E-29 207.6 8.1 241 66-311 41-309 (312)
73 3oja_A Leucine-rich immune mol 99.9 3.4E-23 1.2E-27 209.5 17.4 235 15-266 13-250 (487)
74 3oja_A Leucine-rich immune mol 99.9 2E-23 6.8E-28 211.2 12.5 233 8-261 33-270 (487)
75 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 7.9E-27 189.1 18.7 196 9-243 10-208 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 4E-22 1.4E-26 187.0 20.0 185 375-559 47-238 (276)
77 2o6q_A Variable lymphocyte rec 99.9 7.3E-22 2.5E-26 184.3 19.0 195 11-243 18-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 7.8E-22 2.7E-26 185.5 18.9 198 44-267 9-209 (290)
79 1h6u_A Internalin H; cell adhe 99.9 4E-22 1.4E-26 189.5 17.1 193 44-268 40-232 (308)
80 1h6u_A Internalin H; cell adhe 99.9 2.1E-21 7E-26 184.6 20.1 197 6-224 38-234 (308)
81 2xwt_C Thyrotropin receptor; s 99.9 4.4E-22 1.5E-26 182.3 14.5 195 46-263 32-236 (239)
82 2xwt_C Thyrotropin receptor; s 99.9 1.4E-21 4.7E-26 179.0 14.2 200 57-285 23-236 (239)
83 3m19_A Variable lymphocyte rec 99.9 1.1E-20 3.7E-25 174.2 20.2 177 381-559 15-193 (251)
84 3rfs_A Internalin B, repeat mo 99.9 3.1E-20 1.1E-24 173.3 20.6 179 377-558 38-218 (272)
85 3rfs_A Internalin B, repeat mo 99.9 7E-21 2.4E-25 177.7 15.3 194 357-559 41-236 (272)
86 2ca6_A RAN GTPase-activating p 99.9 8.3E-22 2.8E-26 194.4 9.1 225 43-267 30-317 (386)
87 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.9E-26 192.2 7.7 223 45-267 9-288 (386)
88 3m19_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 166.5 20.0 178 357-536 14-194 (251)
89 2ast_B S-phase kinase-associat 99.8 4.9E-21 1.7E-25 185.4 10.4 242 46-290 48-308 (336)
90 3goz_A Leucine-rich repeat-con 99.8 4.3E-21 1.5E-25 187.2 9.3 244 13-268 2-299 (362)
91 4glp_A Monocyte differentiatio 99.8 6.5E-20 2.2E-24 174.8 13.5 219 45-266 64-307 (310)
92 4ay9_X Follicle-stimulating ho 99.8 2E-19 6.9E-24 174.4 16.2 234 10-262 10-255 (350)
93 1h6t_A Internalin B; cell adhe 99.8 2.7E-19 9.2E-24 168.4 16.4 169 44-220 45-213 (291)
94 1h6t_A Internalin B; cell adhe 99.8 3.6E-19 1.2E-23 167.5 15.3 172 379-561 45-216 (291)
95 3cvr_A Invasion plasmid antige 99.8 7.4E-19 2.5E-23 178.9 18.7 187 357-567 59-252 (571)
96 4glp_A Monocyte differentiatio 99.8 4.5E-20 1.5E-24 175.9 8.8 199 357-559 91-308 (310)
97 3cvr_A Invasion plasmid antige 99.8 8.6E-19 3E-23 178.4 18.4 186 46-252 60-253 (571)
98 2ast_B S-phase kinase-associat 99.8 9.1E-20 3.1E-24 176.5 10.0 246 9-270 47-310 (336)
99 3goz_A Leucine-rich repeat-con 99.8 2.1E-19 7.2E-24 175.2 10.2 250 49-312 2-298 (362)
100 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.4E-23 168.7 12.8 205 360-566 12-223 (350)
101 2o6s_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 152.0 14.8 175 360-542 10-187 (208)
102 2xot_A Amphoterin-induced prot 99.8 1.7E-18 5.9E-23 168.5 13.2 174 383-558 21-202 (361)
103 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.5E-22 150.9 18.0 153 381-535 20-173 (229)
104 1m9s_A Internalin B; cell inva 99.8 3.9E-18 1.3E-22 175.7 16.0 171 44-222 42-212 (605)
105 1m9s_A Internalin B; cell inva 99.8 3.9E-18 1.3E-22 175.7 14.9 172 357-538 43-214 (605)
106 2o6s_A Variable lymphocyte rec 99.8 8.9E-18 3E-22 150.0 15.4 170 382-560 9-180 (208)
107 3e6j_A Variable lymphocyte rec 99.8 2.1E-17 7.1E-22 149.6 17.5 152 405-559 21-173 (229)
108 4ezg_A Putative uncharacterize 99.8 2.6E-18 8.9E-23 151.8 10.5 151 401-558 42-194 (197)
109 1xeu_A Internalin C; cellular 99.7 6.8E-18 2.3E-22 156.1 13.0 168 46-222 20-187 (263)
110 2v9t_B SLIT homolog 2 protein 99.7 3.6E-17 1.2E-21 146.9 17.3 148 383-532 14-163 (220)
111 1xeu_A Internalin C; cellular 99.7 2.2E-18 7.6E-23 159.4 9.7 171 8-200 18-188 (263)
112 4ezg_A Putative uncharacterize 99.7 8.7E-18 3E-22 148.4 12.7 154 377-535 41-195 (197)
113 2xot_A Amphoterin-induced prot 99.7 8.8E-18 3E-22 163.5 13.5 172 11-197 20-202 (361)
114 2v9t_B SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 146.7 15.7 151 359-511 13-165 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 6.9E-17 2.4E-21 145.0 16.9 150 383-534 14-166 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-17 1.2E-21 146.9 14.3 152 358-511 12-166 (220)
117 1dce_A Protein (RAB geranylger 99.7 5.5E-19 1.9E-23 181.0 -1.2 192 42-259 346-566 (567)
118 4fs7_A Uncharacterized protein 99.7 9.7E-16 3.3E-20 151.1 21.2 329 57-480 59-393 (394)
119 4fs7_A Uncharacterized protein 99.7 2.2E-15 7.4E-20 148.6 22.2 118 379-502 275-392 (394)
120 1dce_A Protein (RAB geranylger 99.7 4.9E-18 1.7E-22 174.0 -1.0 191 8-213 348-566 (567)
121 3sb4_A Hypothetical leucine ri 99.6 1.4E-15 4.8E-20 146.0 14.8 101 379-481 225-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 132.7 10.3 134 426-562 23-164 (168)
123 3sb4_A Hypothetical leucine ri 99.6 5.4E-16 1.9E-20 148.9 10.7 79 378-458 248-328 (329)
124 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 130.9 10.4 133 67-200 23-163 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.3E-20 126.1 10.4 126 426-554 16-149 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.6 9.8E-16 3.4E-20 132.5 7.8 135 38-173 12-153 (176)
127 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 3.9E-20 128.1 8.0 122 45-167 17-147 (149)
128 4b8c_D Glucose-repressible alc 99.6 5.9E-16 2E-20 163.8 7.3 195 9-217 173-369 (727)
129 2wfh_A SLIT homolog 2 protein 99.6 5.3E-15 1.8E-19 129.5 12.0 121 12-147 13-136 (193)
130 4fdw_A Leucine rich hypothetic 99.6 2.9E-14 9.8E-19 139.6 18.4 261 252-558 112-383 (401)
131 4fdw_A Leucine rich hypothetic 99.6 1.2E-13 4.1E-18 135.2 22.2 110 398-510 266-382 (401)
132 1a9n_A U2A', U2A'; complex (nu 99.6 3.1E-15 1.1E-19 129.3 8.8 133 424-560 16-155 (176)
133 4gt6_A Cell surface protein; l 99.6 2.1E-13 7.1E-18 134.4 20.5 130 397-532 259-389 (394)
134 2wfh_A SLIT homolog 2 protein 99.5 7E-14 2.4E-18 122.4 13.9 126 383-511 13-139 (193)
135 1w8a_A SLIT protein; signaling 99.5 5.4E-14 1.8E-18 123.2 12.9 127 383-511 11-139 (192)
136 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 118.7 14.8 127 430-559 10-138 (177)
137 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 118.2 15.1 128 382-511 9-137 (177)
138 4gt6_A Cell surface protein; l 99.5 7.4E-13 2.5E-17 130.4 21.1 126 379-509 264-389 (394)
139 1w8a_A SLIT protein; signaling 99.5 8E-14 2.7E-18 122.1 12.7 129 358-488 9-139 (192)
140 4b8c_D Glucose-repressible alc 99.5 7.8E-14 2.7E-18 147.6 12.1 149 380-535 173-330 (727)
141 1ds9_A Outer arm dynein; leuci 99.5 2.2E-15 7.6E-20 133.0 -1.7 128 46-175 24-155 (198)
142 4h09_A Hypothetical leucine ri 99.4 3.8E-11 1.3E-15 117.7 24.1 126 132-263 41-168 (379)
143 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.7E-19 128.5 -1.6 116 80-197 37-153 (198)
144 2r9u_A Variable lymphocyte rec 99.4 8.3E-13 2.9E-17 113.2 9.9 102 12-128 15-119 (174)
145 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 112.2 9.6 102 11-127 11-115 (170)
146 4h09_A Hypothetical leucine ri 99.4 9.1E-11 3.1E-15 115.0 22.3 310 155-544 41-355 (379)
147 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 105.9 12.7 105 382-488 11-115 (170)
148 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 106.0 12.8 108 382-491 14-121 (174)
149 3un9_A NLR family member X1; l 99.3 1E-13 3.5E-18 134.3 -2.0 181 379-560 71-285 (372)
150 3un9_A NLR family member X1; l 99.2 1.6E-12 5.6E-17 125.9 3.0 153 45-197 72-252 (372)
151 2ifg_A High affinity nerve gro 99.0 1.8E-09 6.2E-14 104.3 10.8 102 385-488 13-116 (347)
152 2ifg_A High affinity nerve gro 99.0 1.7E-09 5.9E-14 104.4 9.7 104 406-511 11-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2.1E-09 7.3E-14 103.0 5.3 176 376-556 135-341 (362)
154 2ra8_A Uncharacterized protein 98.8 6.8E-09 2.3E-13 99.5 8.0 81 63-145 134-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 4.3E-09 1.5E-13 91.0 5.3 114 60-173 28-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.8 6.6E-09 2.3E-13 89.8 5.8 109 42-150 33-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 3.1E-08 1.1E-12 82.8 -1.1 83 403-485 61-149 (176)
158 3rw6_A Nuclear RNA export fact 98.3 3.8E-07 1.3E-11 82.6 4.8 105 38-143 134-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.3E-07 4.3E-12 79.2 1.5 82 452-534 62-153 (176)
160 1pgv_A TMD-1, tropomodulin TMD 98.0 1.6E-06 5.5E-11 73.9 2.3 107 44-150 40-170 (197)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 6.8E-06 2.3E-10 70.1 5.2 113 59-171 32-168 (197)
162 3rw6_A Nuclear RNA export fact 97.9 6.1E-06 2.1E-10 74.7 4.7 79 43-122 168-259 (267)
163 3rfe_A Platelet glycoprotein I 97.6 6E-05 2E-09 60.1 4.5 56 11-81 10-68 (130)
164 3rfe_A Platelet glycoprotein I 97.5 0.00025 8.6E-09 56.5 7.8 55 502-558 12-68 (130)
165 2lz0_A Uncharacterized protein 91.7 0.24 8.3E-06 36.7 4.8 48 437-485 6-53 (100)
166 2lz0_A Uncharacterized protein 90.9 0.42 1.4E-05 35.4 5.4 49 412-461 5-53 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-51 Score=433.34 Aligned_cols=495 Identities=20% Similarity=0.212 Sum_probs=421.8
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~ 88 (583)
..+++|++++++++|..++ +++++|++++|.++.++. .|+++++|++|++++|.++.+ |.+|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence 3689999999999999774 479999999999998875 899999999999999999987 55899
Q ss_pred CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccC--CCCcccccCCCCcE
Q 007962 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK 164 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~ 164 (583)
++++|++|++++|.++.+ |..|.++++|++|++++|.+..++ ..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999876 778999999999999999998776 67999999999999999998 47889999999999
Q ss_pred EEecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEc-
Q 007962 165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM- 237 (583)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l- 237 (583)
|++++|.+..+....++.+.+|+ .+++++|.+..++.......+|+.|++++|.+. ..+..+..++.|+.+.+
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 99999999998887788887765 799999999888776666669999999999775 33445556666655554
Q ss_pred --------------------------------CCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCC
Q 007962 238 --------------------------------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (583)
Q Consensus 238 --------------------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 285 (583)
..+.+......+..+++|+.++++++.+..++......+++++++++|
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence 334444333337788999999999999888874444456999999999
Q ss_pred CCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecC
Q 007962 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (583)
Q Consensus 286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (583)
.+..+| .+ .+++|+++++++|...... . .....+++.++++
T Consensus 318 ~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-----------------------------------~~~l~~L~~L~ls 358 (606)
T 3vq2_A 318 QLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-----------------------------------KVALPSLSYLDLS 358 (606)
T ss_dssp CCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-----------------------------------CCCCTTCCEEECC
T ss_pred cCcccc-cC-CCCccceeeccCCcCccch--h-----------------------------------hccCCCCCEEECc
Confidence 997787 45 8999999999988432110 0 1123578999999
Q ss_pred CCCCccC---ChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCcc
Q 007962 366 GMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQ 441 (583)
Q Consensus 366 ~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~ 441 (583)
+|.+..+ +..+..+++|++|++++|.+..++..+..+++|++|++++|.+..... ..+..+++|+.|++++|.++.
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 9998765 778888999999999999999988889999999999999999888766 678899999999999999999
Q ss_pred CCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhc
Q 007962 442 VPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFK 518 (583)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~ 518 (583)
.....+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 887789999999999999999987 4677899999999999999999866 55678999999999999999976 78899
Q ss_pred CCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 519 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
.+++|++|++++|+|+.+|+.+...+++|+.|++++|++..
T Consensus 519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 99999999999999999999866664479999999999863
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-50 Score=425.03 Aligned_cols=498 Identities=22% Similarity=0.276 Sum_probs=418.0
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~~~~ 88 (583)
...+||++.+++++|..++ ..+++|++++|.++.+ +..|.++++|++|++++|.+..+ |.+|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP---------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred CceEECCCCCcccCcCCCC---------------CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 4579999999999999885 4699999999999988 46899999999999999999976 66899
Q ss_pred CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCC-cccccCCCCcEE
Q 007962 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL 165 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L 165 (583)
++++|++|++++|.++.+ |..+.++++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 999999999999999854 67899999999999999999987 567899999999999999998763 345559999999
Q ss_pred EecCCcceeechhhhcccccCc--EEEcCCCcCCccchhhcCCccccEEEccCCcCc-----------------------
Q 007962 166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----------------------- 220 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----------------------- 220 (583)
++++|.+..+....+..+++|+ .+++++|.+..++........|+.++++++...
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 9999999999888899999999 899999999877665556678999998877411
Q ss_pred ---cc-CCCCcCCC--CCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCC-C
Q 007962 221 ---SI-PSSISGCC--SLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-P 291 (583)
Q Consensus 221 ---~~-~~~~~~~~--~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~-~ 291 (583)
.+ +..+..+. +|+.+++++|.+..++. .++.+++|++|++++|.++.++..... .+|++|++++|.+..+ +
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 00 01122222 68899999999987755 488899999999999999887765433 4599999999998886 4
Q ss_pred hhhcccCCCcEEecCCCccc-cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc
Q 007962 292 PEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (583)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (583)
..+..+++|+++++++|.+. .++...+. ...+++.+++++|.+.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------------------------------~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLE-----------------------------------NLENLRELDLSHDDIE 363 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTT-----------------------------------TCTTCCEEECCSSCCC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhh-----------------------------------ccCcCCEEECCCCccc
Confidence 46888999999999998764 22222111 2247899999999887
Q ss_pred cC---ChhhhccCCccEEEcCCCCCCcC-CccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCccCCCC
Q 007962 371 AI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSD 445 (583)
Q Consensus 371 ~~---~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~ 445 (583)
.+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+......
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 65 55677889999999999998874 5678899999999999999887644 4478999999999999999998888
Q ss_pred ccCCCCcccEEeCCCCccCCC---CCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCc-cchhhcCC
Q 007962 446 GFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQS-IPEGFKNL 520 (583)
Q Consensus 446 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~-l~~~l~~~ 520 (583)
.+.++++|++|++++|.+.+. ....+..+++|++|++++|.++.+ |..+..+++|++|++++|.++. .|+.+.++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 899999999999999998752 335688899999999999999976 5678899999999999999985 46789999
Q ss_pred CCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 521 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
++| +|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999 99999999999888776666999999999999863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-49 Score=420.58 Aligned_cols=533 Identities=23% Similarity=0.318 Sum_probs=295.4
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~ 88 (583)
.+.+||++++++++|..+.. ++++|++++|.++.++. .|.++++|++|++++|.+..+ |.+|.
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~---------------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPT---------------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCT---------------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred CCeeECCCCCccccccccCC---------------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence 45789999999988886643 45555555555555543 355555555555555555544 33455
Q ss_pred CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCC-CcccccCCCCcEE
Q 007962 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL 165 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L 165 (583)
++++|++|++++|.++.+|. .|.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 55555555555555555544 3555555555555555555443 3455555555555555555433 2334455555555
Q ss_pred EecCCcceeechhhhc--ccccCcEEEcCCCcCCccc-hhhcC---------------------------CccccEEEcc
Q 007962 166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGS---------------------------LSRLIRLDLH 215 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~---------------------------~~~L~~L~l~ 215 (583)
++++|.+..+....+. .+++|+.|++++|.+..++ ..+.. .++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 5555555544443332 2345555555555443321 11111 1334445555
Q ss_pred CCcCccc-CCCCcCCCC--CcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccc--ccccccEEECcCCCCC-
Q 007962 216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLS- 288 (583)
Q Consensus 216 ~~~~~~~-~~~~~~~~~--L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~- 288 (583)
+|.+... +..+..++. |+.|++++|.+..+ +..++.+++|++|++++|.+....... ...+|+.++++++...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 5544422 333444432 55555555555533 234555555555555555554433211 1123444544443221
Q ss_pred -----CCCh----hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccc
Q 007962 289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (583)
Q Consensus 289 -----~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (583)
.++. .+..+++|+++++++|.+..+....+.... .++.+ .+.......... ... ........++
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L--~Ls~n~~~~~~l-~~~--~f~~~~~~~L 383 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI--NLKYL--SLSNSFTSLRTL-TNE--TFVSLAHSPL 383 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT--TCCEE--ECTTCBSCCCEE-CTT--TTGGGTTSCC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc--CCcEE--ECCCCchhhhhc-chh--hhcccccCcC
Confidence 1111 234444445555544444433322221100 00000 000000000000 000 0000011467
Q ss_pred ceeecCCCCCccC-ChhhhccCCccEEEcCCCCCCc-CC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962 360 KELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (583)
Q Consensus 360 ~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (583)
+.+++++|.+..+ +..+..+++|+.|++++|.+.. ++ ..+..+++|++|++++|.+.......|..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 7777877777654 3455567788888888887764 44 4577777888888888877776666677777777777777
Q ss_pred CCCcc--CCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc---------chhccCcccEEeC
Q 007962 437 NPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT---------DILRLQQLRILDL 505 (583)
Q Consensus 437 ~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~---------~~~~~~~L~~L~l 505 (583)
|.+.. ..+..|.++++|++|++++|.++...+..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 77653 233447777777777777777777766677777777777777777775422 2556777777777
Q ss_pred CCCcCCccchh-hcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHh
Q 007962 506 SQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 565 (583)
Q Consensus 506 ~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 565 (583)
++|.++.+|.. +..+++|++|++++|+|+.+|+..+..+++|+.|++++|+++.+++..+
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 77777777643 6777777777777777777777766656777777777777777776654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-50 Score=435.67 Aligned_cols=503 Identities=27% Similarity=0.337 Sum_probs=317.9
Q ss_pred HHHhhhceeeccCCcCCC-CCh--hhhhcccccCCCCCcccccCccEEEcCCCcchh-hhHh-hCCCCCCcEEEcCCCCC
Q 007962 6 KAARTSGSLNLSNRSLRD-VPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKED-LRNLPLLTVLNVSHNKL 80 (583)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-l~~~-~~~~~~L~~L~L~~~~l 80 (583)
.+.+.++++|++++.+.. +|. .+ .++++|++|++++|.++. +|.. +.++++|++|++++|.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 345778899999988873 444 22 225566666666665552 2222 25556666666666655
Q ss_pred cccch-h---hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccC-CCCcc
Q 007962 81 SELPA-A---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPED 155 (583)
Q Consensus 81 ~~l~~-~---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~ 155 (583)
+..+. . +.++++|++|++++|.++.... +..+++|++|++++|.+...+..+..+++|++|++++|.+. .++..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH
Confidence 53322 2 4555555555555555543221 24555555555555555543333555555555555555554 33444
Q ss_pred cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCC-ccccEEEccCCcCc-ccCCCCcCCCCC
Q 007962 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCSL 232 (583)
Q Consensus 156 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~L 232 (583)
+..+++|++|++++|.+....+. ..+++|++|++++|.+. .+|..+... ++|++|++++|.+. .+|..+..+++|
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 55555555555555554432221 14445555555555443 344443332 45555555555444 334444445555
Q ss_pred cEEEcCCCCCc-cCchh-hhCCCCCCEEEccCCccc-ccccccc----------------------------cccccEEE
Q 007962 233 AEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEAC----------------------------QLRLSVLD 281 (583)
Q Consensus 233 ~~L~l~~~~~~-~l~~~-l~~~~~L~~L~l~~~~l~-~~~~~~~----------------------------~~~L~~L~ 281 (583)
++|++++|.+. .+|.. +..+++|++|++++|.+. .++.... ..+|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 55555555444 34432 444445555555544443 2222111 12355555
Q ss_pred CcCCCCCC-CChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962 282 LSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360 (583)
Q Consensus 282 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (583)
+++|.+.+ ++..+.++++|++|++++|.+...... ......+++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-----------------------------------~l~~l~~L~ 445 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-----------------------------------SLGSLSKLR 445 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-----------------------------------GGGGCTTCC
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-----------------------------------HHhcCCCCC
Confidence 55555543 444555556666666665554322111 112235788
Q ss_pred eeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC
Q 007962 361 ELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (583)
Q Consensus 361 ~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 438 (583)
.+++++|.+. .++..+..+++|++|++++|.+.. +|..+..+++|++|++++|++.+..+..++.+++|+.|++++|+
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 8999998887 677778888999999999998884 77788889999999999999987777778889999999999999
Q ss_pred CccCCCCccCCCCcccEEeCCCCccCCCCC--------------------------------------------------
Q 007962 439 LRQVPSDGFKDIPMLQILDLSYNIASLPEN-------------------------------------------------- 468 (583)
Q Consensus 439 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------------------------------------- 468 (583)
+.+..+..+..+++|++|++++|.+++..+
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 887666668889999999999887653222
Q ss_pred --------------------CCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEE
Q 007962 469 --------------------PPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTEL 526 (583)
Q Consensus 469 --------------------~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L 526 (583)
..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+.++++|++|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 23455688999999999988 78889999999999999999998 789999999999999
Q ss_pred eCCCCCCC-cCCCCccccccccceeeccCCCCccc
Q 007962 527 DLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSI 560 (583)
Q Consensus 527 ~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~ 560 (583)
++++|+++ .+|..+.. +++|++|++++|+++..
T Consensus 686 dLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp ECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEE
T ss_pred ECCCCcccCcCChHHhC-CCCCCEEECcCCccccc
Confidence 99999999 45554444 48999999999988643
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-50 Score=430.45 Aligned_cols=532 Identities=27% Similarity=0.290 Sum_probs=424.0
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhH--hhCCCCCCcEEEcCCCCCcc-cc
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKE--DLRNLPLLTVLNVSHNKLSE-LP 84 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~--~~~~~~~L~~L~L~~~~l~~-l~ 84 (583)
+.+..++++.+++..+|.. +..+++|++|+|++|.++ .+|. .++++++|++|++++|.+.. +|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 143 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSG-------------FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143 (768)
T ss_dssp TTCCEEECTTSCEEECCCC-------------CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS
T ss_pred CcccccCCcCCCcCCCchh-------------hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC
Confidence 5566666666665444443 445899999999999998 4676 89999999999999998873 44
Q ss_pred hhh-hCCCCccEEEccCCccccCC-cc---ccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccC
Q 007962 85 AAI-GELHMLKSLDVSFNSIMKIP-DE---IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC 159 (583)
Q Consensus 85 ~~~-~~~~~L~~L~L~~~~l~~l~-~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l 159 (583)
..+ .++++|++|++++|.++..+ .. +.++++|++|++++|.+..... +..+++|++|++++|.+......+..+
T Consensus 144 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l 222 (768)
T 3rgz_A 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDC 222 (768)
T ss_dssp CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTC
T ss_pred HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccC
Confidence 444 78999999999999998543 33 7889999999999999886543 388999999999999998655559999
Q ss_pred CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCc-ccCCCCcC-CCCCcEEEc
Q 007962 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISG-CCSLAEFYM 237 (583)
Q Consensus 160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~L~~L~l 237 (583)
++|++|++++|.+.......+..+++|++|++++|.+....... .+++|++|++++|.+. .+|..+.. +++|++|++
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 99999999999999777777999999999999999986433223 7899999999999988 77887766 499999999
Q ss_pred CCCCCc-cCchhhhCCCCCCEEEccCCccc-ccccc--cccccccEEECcCCCCC-CCChhhcccC-CCcEEecCCCccc
Q 007962 238 GNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVE--ACQLRLSVLDLSNNSLS-GLPPEIGKMT-TLRKLLLTGNPLR 311 (583)
Q Consensus 238 ~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~ 311 (583)
++|.+. .+|..++.+++|++|++++|.+. .++.. ....+|++|++++|.+. .+|..+.+++ +|+++++++|.+.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 999998 77889999999999999999987 56544 23346999999999988 5788888887 9999999999875
Q ss_pred cccccccCCCcHHHHHHHHhcCCCCCCcc-cccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCC
Q 007962 312 TLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389 (583)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~ 389 (583)
......+.... ........ .................+++.+++++|.+. .++..+..+++|++|++++
T Consensus 382 ~~~~~~~~~~~----------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 382 GPILPNLCQNP----------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EECCTTTTCST----------TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CCcChhhhhcc----------cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 42221111100 00000000 000000011222333467889999999887 6777888889999999999
Q ss_pred CCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962 390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468 (583)
Q Consensus 390 ~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 468 (583)
|.+.. +|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+.++..+++|++|++++|.+.+..+
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 98884 77788899999999999999998777778999999999999999997666778899999999999999988888
Q ss_pred CCCCCCCccceEeccccccc-ccccch-----------------------------------------------------
Q 007962 469 PPFSSLPHLQELYLRRMQLR-EAPTDI----------------------------------------------------- 494 (583)
Q Consensus 469 ~~~~~l~~L~~L~l~~~~l~-~~~~~~----------------------------------------------------- 494 (583)
..+..+++|+.|++++|.++ .+|..+
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 88999999999999999776 444432
Q ss_pred -----------------hccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCccccccccceeeccCC
Q 007962 495 -----------------LRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGN 555 (583)
Q Consensus 495 -----------------~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~ 555 (583)
..+++|+.|++++|.++ .+|..+.++++|+.|++++|+++ .+|..+..+ ++|++|++++|
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~LdLs~N 690 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSN 690 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSS
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEECCCC
Confidence 23577899999999998 78999999999999999999999 556665554 99999999999
Q ss_pred CCccchhHHhc
Q 007962 556 PLRSIRRTILD 566 (583)
Q Consensus 556 ~~~~~~~~~~~ 566 (583)
+++...+..+.
T Consensus 691 ~l~g~ip~~l~ 701 (768)
T 3rgz_A 691 KLDGRIPQAMS 701 (768)
T ss_dssp CCEECCCGGGG
T ss_pred cccCcCChHHh
Confidence 99866555553
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-48 Score=412.41 Aligned_cols=507 Identities=24% Similarity=0.295 Sum_probs=394.2
Q ss_pred ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (583)
Q Consensus 47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~ 124 (583)
-+.+++++++++.+|..+. +++++|++++|.++.++. +|.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3678999999999997665 799999999999998876 799999999999999999865 567899999999999999
Q ss_pred cCCcCCc-ccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962 125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201 (583)
Q Consensus 125 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 201 (583)
.++.++. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+....+..+++|++|++++|.++.++.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 9999886 6999999999999999999876 569999999999999999998877778999999999999999987654
Q ss_pred hh--cCCccccEEEccCCcCcccC-CCCcCC---------------------------CCCcEEEcCCCCCccC-chhhh
Q 007962 202 TI--GSLSRLIRLDLHQNRILSIP-SSISGC---------------------------CSLAEFYMGNNALSAL-PAELG 250 (583)
Q Consensus 202 ~l--~~~~~L~~L~l~~~~~~~~~-~~~~~~---------------------------~~L~~L~l~~~~~~~l-~~~l~ 250 (583)
.+ ..+++|+.|++++|.+..++ ..+..+ ++|+.|++++|.+... +..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 33 35689999999999888653 333333 5678888888888744 55677
Q ss_pred CCC--CCCEEEccCCcccccccccc--cccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCcccc------cc---cc
Q 007962 251 KLS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT------LR---SS 316 (583)
Q Consensus 251 ~~~--~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~------~~---~~ 316 (583)
.++ +|++|++++|.+..++...+ ..+|+++++++|.+.++ +..+.++++|++++++++.... ++ ..
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 665 49999999999987765433 34699999999998884 4568999999999998764321 11 11
Q ss_pred ccCCCcHHHHHHHHhcCCCCCCccc-ccchhhhhhhhhccccccceeecCCCCCc--cCChhhh---ccCCccEEEcCCC
Q 007962 317 LVNGPTPALLKYLRSRLPENEDSEA-STTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIW---EAGEITKLDLSRN 390 (583)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~---~~~~L~~L~l~~~ 390 (583)
.+.. ......... ................+++.+++++|.+. .++...+ ..++|+.+++++|
T Consensus 324 ~~~~------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 324 SFQW------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp TTTT------------CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred hccc------------CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 1110 000000000 00000000111122345667777666532 2222111 1246777778877
Q ss_pred CCCcC-CccccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC--CC
Q 007962 391 SIQEL-PPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LP 466 (583)
Q Consensus 391 ~l~~l-~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~ 466 (583)
.+..+ +..+..+++|+.|++++|.+.+ .+...|..+++|++|++++|++..+....|..+++|+.|++++|.+. +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 77764 4567888999999999998874 55567888999999999999988888888999999999999998876 34
Q ss_pred CCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch---------hhcCCCCCCEEeCCCCCCCcC
Q 007962 467 ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISAL 536 (583)
Q Consensus 467 ~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~---------~l~~~~~L~~L~l~~~~l~~~ 536 (583)
.+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|+++.+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 566789999999999999999987654 6789999999999999986532 278899999999999999999
Q ss_pred CCCccccccccceeeccCCCCccchhHHhcc
Q 007962 537 PPELGLLEPSLQALRLDGNPLRSIRRTILDR 567 (583)
Q Consensus 537 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 567 (583)
|+..+..+++|+.|++++|.++.++...|..
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 9987777799999999999999999887743
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-48 Score=406.06 Aligned_cols=478 Identities=21% Similarity=0.222 Sum_probs=404.2
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~ 86 (583)
+.++++|+++++++.++...+.. +++|++|++++|.++.++ ..|.++++|++|++++|.+..+ |.+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 57899999999999988855443 789999999999999884 5799999999999999999987 779
Q ss_pred hhCCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCC--cCCcccccCCCCCEEEccccccCCCC-cccccCCCC
Q 007962 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L 162 (583)
|+++++|++|++++|.++.++ ..+.++++|++|++++|.+. .+|..++++++|++|++++|.+..++ ..+..+++|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999999999998776 67999999999999999998 47889999999999999999988653 445555544
Q ss_pred ----cEEEecCCcceeechhhhcccccCcEEEcCCCcCC--ccchhhcCCccccEEEc----------------------
Q 007962 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL---------------------- 214 (583)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l---------------------- 214 (583)
.+|++++|.+..+....+... +|+.|++++|.+. ..+..+..++.|+.+++
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 489999999999988867665 8999999999874 34556666666665554
Q ss_pred -----------cCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECc
Q 007962 215 -----------HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (583)
Q Consensus 215 -----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 283 (583)
..+.+......+..+++|+.++++++.+..++ .+..+++|++|++++|.+..++.. ...+|++++++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLT 336 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeecc
Confidence 33344433233788999999999999999888 888999999999999999888855 55679999999
Q ss_pred CCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceee
Q 007962 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (583)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (583)
+|...... .+..+++|+++++++|.+...... ........+++.++
T Consensus 337 ~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 337 MNKGSISF-KKVALPSLSYLDLSRNALSFSGCC---------------------------------SYSDLGTNSLRHLD 382 (606)
T ss_dssp SCSSCEEC-CCCCCTTCCEEECCSSCEEEEEEC---------------------------------CHHHHCCSCCCEEE
T ss_pred CCcCccch-hhccCCCCCEEECcCCccCCCcch---------------------------------hhhhccCCcccEeE
Confidence 99544422 567899999999999987644210 01112235789999
Q ss_pred cCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCcc
Q 007962 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (583)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 441 (583)
+++|.+..++..+..+++|++|++++|.+...+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 999999988888888999999999999988754 378899999999999999998888888999999999999999987
Q ss_pred -CCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccchhhcC
Q 007962 442 -VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKN 519 (583)
Q Consensus 442 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~l~~ 519 (583)
.....|..+++|++|++++|.++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+..
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~ 542 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence 3455689999999999999999998888899999999999999999976 77888999999999999999999988888
Q ss_pred CC-CCCEEeCCCCCCCc
Q 007962 520 LT-SLTELDLSDNNISA 535 (583)
Q Consensus 520 ~~-~L~~L~l~~~~l~~ 535 (583)
++ +|++|++++|++..
T Consensus 543 l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCTTCCEEECCSCCCCC
T ss_pred hcccCcEEEccCCCccc
Confidence 87 69999999998873
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8e-47 Score=397.48 Aligned_cols=481 Identities=22% Similarity=0.264 Sum_probs=404.7
Q ss_pred ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCccc-chhhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (583)
Q Consensus 47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~ 124 (583)
-+.++.++..++.+|..+.. ++++|++++|.++.+ +.+|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 45789999999999987754 799999999999988 55899999999999999999855 677999999999999999
Q ss_pred cCCcC-CcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-ch
Q 007962 125 QLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PE 201 (583)
Q Consensus 125 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~ 201 (583)
.+..+ |..++.+++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99866 56899999999999999999987 56789999999999999999987655577799999999999999876 56
Q ss_pred hhcCCcccc--EEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc--------------------------cC-chhhhCC
Q 007962 202 TIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGKL 252 (583)
Q Consensus 202 ~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------------~l-~~~l~~~ 252 (583)
.++.+++|+ .+++++|.+..++........|+.++++++... .+ +..+..+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 788899999 899999999987766666678999999887511 00 1112222
Q ss_pred --CCCCEEEccCCccccccccccc--ccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHH
Q 007962 253 --SKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (583)
Q Consensus 253 --~~L~~L~l~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (583)
.+|+++++++|.++.++...+. .+|+++++++|.+..+|..+.++++|++|++++|.+..+....+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~---------- 321 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA---------- 321 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG----------
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh----------
Confidence 1788889999988877765333 45999999999998888888889999999999988765533222
Q ss_pred HHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCCh-hhhccCCccEEEcCCCCCCcC---CccccCCC
Q 007962 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPS-EIWEAGEITKLDLSRNSIQEL---PPELSSCA 403 (583)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~l~~l---~~~l~~~~ 403 (583)
....+++.+++++|.+. .++. .+..+++|++|++++|.+..+ +..+..++
T Consensus 322 -------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 322 -------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp -------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred -------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 12357899999999876 4544 467789999999999998875 56788999
Q ss_pred CCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEec
Q 007962 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (583)
Q Consensus 404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 482 (583)
+|++|++++|.+.+.....+..+++|+.|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 99999999999988888888999999999999999987643 44889999999999999999888888999999999999
Q ss_pred ccccccc--c--ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCC
Q 007962 483 RRMQLRE--A--PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557 (583)
Q Consensus 483 ~~~~l~~--~--~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 557 (583)
++|.++. + +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+++..+..++.| .|++++|++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 9999874 2 24578899999999999999976 5779999999999999999998777666666899 999999999
Q ss_pred ccchhHHh
Q 007962 558 RSIRRTIL 565 (583)
Q Consensus 558 ~~~~~~~~ 565 (583)
+.+++..+
T Consensus 536 ~~~~~~~~ 543 (606)
T 3t6q_A 536 SIILPSLL 543 (606)
T ss_dssp CCCCGGGH
T ss_pred cccCHhhc
Confidence 99887765
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-47 Score=396.15 Aligned_cols=493 Identities=22% Similarity=0.262 Sum_probs=376.0
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~ 88 (583)
..+++|++.+++++|..++ ++++.|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 4579999999999999764 47999999999999886 47999999999999999999885 4799
Q ss_pred CCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcE
Q 007962 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~ 164 (583)
++++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998765 679999999999999999998875 68999999999999999885 6889999999999
Q ss_pred EEecCCcceeechhhhcccccC----cEEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEcC
Q 007962 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMG 238 (583)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~ 238 (583)
|++++|.+..+....++.+++| +.+++++|.+..++.......+|+.++++++... .++..+..++.++...+.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999999988888899888 8999999999876554434458999999987432 233334444444443332
Q ss_pred CCCC------ccCc-hhhhCCC--CCCEEEccCC-cccccccc--cccccccEEECcCCCCCCCChhhcccCCCcEEecC
Q 007962 239 NNAL------SALP-AELGKLS--KLGTLDLHSN-QLKEYCVE--ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (583)
Q Consensus 239 ~~~~------~~l~-~~l~~~~--~L~~L~l~~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 306 (583)
...+ ..++ ..+..++ .++.+++..+ .+...... ....+++.+++++|.+..++..+..+ +|++++++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence 1111 1111 0111111 1233333333 22111111 11223555555555555555555555 56666665
Q ss_pred CCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEE
Q 007962 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (583)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (583)
+|.+..++.. ...+++.+++.++........ ..+++|++|+
T Consensus 313 ~n~~~~l~~~--------------------------------------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 313 NCKFGQFPTL--------------------------------------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp SCBCSSCCBC--------------------------------------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred cCcccccCcc--------------------------------------cccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 5554333211 112455555555554432222 5578999999
Q ss_pred cCCCCCCcC---CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-CccCCCCcccEEeCCCCc
Q 007962 387 LSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462 (583)
Q Consensus 387 l~~~~l~~l---~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 462 (583)
+++|.++.. +..+..+++|++|++++|.+...... +..+++|+.|++++|.+..... ..+..+++|++|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 999988775 56678899999999999988877665 7899999999999999887654 568899999999999999
Q ss_pred cCCCCCCCCCCCCccceEeccccccc--ccccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962 463 ASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE 539 (583)
Q Consensus 463 ~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~ 539 (583)
+....+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++++ |..+..+++|++|++++|+++.+++.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 98888888999999999999999887 5888889999999999999999976 77899999999999999999998887
Q ss_pred ccccccccceeeccCCCCcc
Q 007962 540 LGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 540 ~~~~~~~L~~L~l~~~~~~~ 559 (583)
.+..+++|+.|++++|+++.
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 76667999999999999864
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-45 Score=380.97 Aligned_cols=483 Identities=19% Similarity=0.242 Sum_probs=391.1
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~ 86 (583)
+...++|+++++++++|..++ ++|++|++++|.++.++ ..|.++++|++|++++|.+..++ .+
T Consensus 5 ~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp CTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred CCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 455679999999999999774 47999999999999874 67999999999999999999875 58
Q ss_pred hhCCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccc-cCCCC-cccccCCC
Q 007962 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSK 161 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~l~-~~l~~l~~ 161 (583)
|..+++|++|++++|.++.++.. +.++++|++|++++|.++. .+..+.++++|++|++++|. +..++ ..+..+++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 99999999999999999977765 9999999999999999985 46789999999999999998 56665 57899999
Q ss_pred CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh-cCCccccEEEccCCcCcccC----CCCcCCCCCcEEE
Q 007962 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFY 236 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~ 236 (583)
|++|++++|.+....+..+..+++|++|+++++....++.++ ..+++|+.|++++|.+..++ .....+++|+.++
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 999999999999887777999999999999999988777654 56899999999999888652 2235578899999
Q ss_pred cCCCCCcc-----CchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962 237 MGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311 (583)
Q Consensus 237 l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (583)
++++.+.. ++..+..+++|+.+++++|.+..+..... .....+..+++++.+.+.++.+.
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------SESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------CTTTCCCCCTTCCEEEEESCBCS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------cchhhhhhhcccccccccccccc
Confidence 99887762 33445667888888888887654322110 01122445667777777776543
Q ss_pred cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh-ccCCccEEEcCCC
Q 007962 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRN 390 (583)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~ 390 (583)
..... ... ........+++.++++++.+..++..++ .+++|++|++++|
T Consensus 295 ~~~~~---~~l---------------------------~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 295 QFYLF---YDL---------------------------STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CGGGS---CCC---------------------------CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred hhhhc---ccc---------------------------hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 21100 000 0011123468889999999988988875 6899999999999
Q ss_pred CCCc-CC---ccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC
Q 007962 391 SIQE-LP---PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (583)
Q Consensus 391 ~l~~-l~---~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 464 (583)
.+.+ ++ ..+..+++|++|++++|.++.+.. ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcc
Confidence 9886 32 346789999999999999988753 5688999999999999999988764 788999999999999987
Q ss_pred CCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccc
Q 007962 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 544 (583)
Q Consensus 465 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 544 (583)
..... ..++|++|++++|+++.++ ..+++|++|++++|.++.+|. ...+++|++|++++|+++.+++..+..+
T Consensus 424 ~l~~~---~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 424 VVKTC---IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCCTT---SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred cccch---hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 65432 2368999999999999865 478999999999999999987 4678999999999999999988866666
Q ss_pred cccceeeccCCCCcc
Q 007962 545 PSLQALRLDGNPLRS 559 (583)
Q Consensus 545 ~~L~~L~l~~~~~~~ 559 (583)
++|+.|++++|+++.
T Consensus 497 ~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 497 TSLQKIWLHTNPWDC 511 (549)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cccCEEEecCCCccC
Confidence 999999999999853
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=399.31 Aligned_cols=486 Identities=23% Similarity=0.262 Sum_probs=395.8
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCC-Cccc-chhhh
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG 88 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~-l~~l-~~~~~ 88 (583)
..+||+++++++||. + .+++++|+|++|.|+.+ +..|.++++|++|+|++|. +..+ |.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 579999999999998 5 35799999999999987 4689999999999999994 4466 66899
Q ss_pred CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCc-CCcc--cccCCCCCEEEccccccCCCC--cccccCCCC
Q 007962 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM 162 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~--~~l~~l~~L 162 (583)
++++|++|+|++|.+..+ |..|.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..++ ..+.++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999999865 7889999999999999999985 4443 899999999999999998653 579999999
Q ss_pred cEEEecCCcceeechhhhccc--ccCcEEEcCCCcCCc-cchhhcCCcc------ccEEEccCCcCc-ccCCC-------
Q 007962 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRIL-SIPSS------- 225 (583)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~-~~~~~------- 225 (583)
++|++++|.+..+....+..+ ++|+.|++++|.+.. .+..++.+++ |+.|++++|.+. ..+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999999999988777778777 889999999998854 4444444444 999999998654 11111
Q ss_pred -----------------------------CcC--CCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCcccccccccc
Q 007962 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (583)
Q Consensus 226 -----------------------------~~~--~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 273 (583)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 26789999999988854 5578888999999999998887655433
Q ss_pred --cccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhh
Q 007962 274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (583)
Q Consensus 274 --~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 350 (583)
..+|++|++++|.+..+ +..+..+++|++|++++|.+..++...+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------ 360 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------ 360 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence 34599999999988875 556888999999999999887665444332
Q ss_pred hhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCC
Q 007962 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSL 429 (583)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L 429 (583)
..+++.+++++|.+..++. +++|+.+++++|.+..+|.. ..+++.|++++|.+.+... ..+..+++|
T Consensus 361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 2478999999998887654 77899999999999887753 5679999999999988654 345689999
Q ss_pred cEEecCCCCCccCCCC-ccCCCCcccEEeCCCCccCC-----CCCCCCCCCCccceEecccccccccccc-hhccCcccE
Q 007962 430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRI 502 (583)
Q Consensus 430 ~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~ 502 (583)
+.|++++|+++.++.. .+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++.++.. +..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999999876543 45678999999999998863 3345688899999999999999977655 578999999
Q ss_pred EeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 503 L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
|++++|.++.+|..... ++|+.|++++|+|+.+++..+ .+|+.+++++|++..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 99999999988755333 899999999999998877654 479999999998753
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-44 Score=373.45 Aligned_cols=475 Identities=23% Similarity=0.287 Sum_probs=373.8
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~ 86 (583)
+.++++|+++++++.++...+ ..+++|++|++++|.++.++ ..|+++++|++|++++|.++.++ .+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF------------FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT------------TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHh------------hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 468899999999999887544 34789999999999999886 57999999999999999999876 58
Q ss_pred hhCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCC-cccccCCCC
Q 007962 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L 162 (583)
|..+++|++|++++|.++.++. .+.++++|++|++++|.+.. +|..++++++|++|++++|.+..++ ..+..+++|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999999998775 68999999999999999985 6889999999999999999998654 567778888
Q ss_pred ----cEEEecCCcceeechhhhcccccCcEEEcCCCcC--CccchhhcCCccccEEEccCCcC------cccC-CCCcCC
Q 007962 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL--NGMPETIGSLSRLIRLDLHQNRI------LSIP-SSISGC 229 (583)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~l~~~~~------~~~~-~~~~~~ 229 (583)
+.|++++|.+..+....+... +|+.++++++.. ..++..+..++.++...+....+ ..++ ..+..+
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999999999988877766 899999998844 23455566666665554432211 1111 122222
Q ss_pred CC--CcEEEcCCC-CCc-cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEec
Q 007962 230 CS--LAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (583)
Q Consensus 230 ~~--L~~L~l~~~-~~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 305 (583)
++ ++.+++.++ .+. ..+..+..+++|++++++++.+..++......+++++++++|.+..++. ..+++|+++++
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeC
Confidence 22 344555444 222 3455666677777777777776666554444467777777777766654 45677777777
Q ss_pred CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccC---ChhhhccCCc
Q 007962 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEI 382 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L 382 (583)
+++........ ....+++.+++++|.+... +..+..+++|
T Consensus 333 ~~n~~~~~~~~-------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 333 TSNKGGNAFSE-------------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp ESCBSCCBCCC-------------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred cCCcccccccc-------------------------------------ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 77654321110 1224677777777776654 4667788999
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
++|++++|.+..++..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.......|.++++|++|++++|
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 99999999998887778999999999999998887654 56789999999999999999988888999999999999999
Q ss_pred ccC-CCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCc
Q 007962 462 IAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA 535 (583)
Q Consensus 462 ~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~ 535 (583)
.+. ...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+++++ ..+..+++|++|++++|+++.
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 987 45567889999999999999999976 778889999999999999999775 458999999999999998884
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.6e-43 Score=369.86 Aligned_cols=508 Identities=22% Similarity=0.252 Sum_probs=388.5
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~ 89 (583)
.++||++.++++||+.++ +++++|||++|.|+.++. .|.++++|++|+|++|.++.+++ +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 468999999999999884 479999999999999974 79999999999999999998865 8999
Q ss_pred CCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcEE
Q 007962 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L 165 (583)
+++|++|+|++|.++.+|. .|.++++|++|++++|.++.++. .++++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998875 58999999999999999998875 58999999999999999874 56788999999999
Q ss_pred EecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEc--
Q 007962 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM-- 237 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l-- 237 (583)
++++|.+..+....+..+.+++ .++++.+.+..++........+..+++.++... ..+..+..+..++...+
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999999998887777766544 678888888776655555556667777665432 11122333333333322
Q ss_pred ----------------------------CCCCCc----cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCC
Q 007962 238 ----------------------------GNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (583)
Q Consensus 238 ----------------------------~~~~~~----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~ 285 (583)
..+... .....+....+++.+.+.++.+..+........++.+++.++
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 211111 122233444566666666665555544444445666666666
Q ss_pred CCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecC
Q 007962 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (583)
Q Consensus 286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (583)
.+..++. ..+..++.+.+..+........ ....+++.++++
T Consensus 339 ~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~-------------------------------------~~l~~L~~L~ls 379 (635)
T 4g8a_A 339 KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDLS 379 (635)
T ss_dssp EESSCCC--CBCTTCCEEEEESCCSCCBCCC-------------------------------------CBCTTCCEEECC
T ss_pred cccCcCc--ccchhhhhcccccccCCCCccc-------------------------------------ccccccccchhh
Confidence 5555432 2345566666655543221110 112467888888
Q ss_pred CCCCc---cCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcEEecCCCCCcc
Q 007962 366 GMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441 (583)
Q Consensus 366 ~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~ 441 (583)
.+.+. ..+.......+|+.+++..+....++..+..+++|+.+++.++.... .....|..+++++.++++.|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 88765 34556667789999999999887777778899999999999886554 344567889999999999999999
Q ss_pred CCCCccCCCCcccEEeCCCCcc-CCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccc-hhhc
Q 007962 442 VPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFK 518 (583)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~ 518 (583)
+....+..+++|+.|++++|.+ ....+..+..+++|++|+|++|+++.+ |..+.++++|++|++++|.+++++ ..+.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 8888899999999999999975 445667799999999999999999976 556789999999999999999875 5589
Q ss_pred CCCCCCEEeCCCCCCCcCCCCcccc-ccccceeeccCCCCccchhHHhccchHHHHHHHhhc
Q 007962 519 NLTSLTELDLSDNNISALPPELGLL-EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 579 (583)
Q Consensus 519 ~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (583)
.+++|++|++++|+|+.+++..+.. +++|+.|++++|+++ ++........|++++
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQ 595 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHHT
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHhC
Confidence 9999999999999999888766544 368999999999996 444455566676654
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-43 Score=361.12 Aligned_cols=446 Identities=21% Similarity=0.211 Sum_probs=305.8
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~ 89 (583)
+++||++++++.+|..++ ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 578999999999998663 47999999999999875 5799999999999999999877 568999
Q ss_pred CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCCcccccCCCC--cEE
Q 007962 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L 165 (583)
+++|++|++++|.++.+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.+.. ..+..+++| ++|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 99999999999998888766 78889999999888875 45788888888888888887765 355666666 777
Q ss_pred EecCCcc--eeechhhhcccc-cCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCC-
Q 007962 166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA- 241 (583)
Q Consensus 166 ~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~- 241 (583)
++++|.+ ....+..+..+. +...+++++|.+... ..+..+..+++|+.+++++|.
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~---------------------~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF---------------------ILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC---------------------CCCCCCTTCSEEEECCEEECCS
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhh---------------------hhhhhhhcccceeecccccccc
Confidence 7777766 333333233332 122334444433210 011223344444444444443
Q ss_pred ------CccCchhhhCCCCCCEEEccCCcccccc-----cccccccccEEECcCCCCC-CCChhh-----cccCCCcEEe
Q 007962 242 ------LSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLL 304 (583)
Q Consensus 242 ------~~~l~~~l~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~ 304 (583)
+......++.+++|+.|+++++.+.... ......+++++++++|.+. .+|..+ +.+++|+.++
T Consensus 203 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~ 282 (520)
T 2z7x_B 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282 (520)
T ss_dssp TTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred ccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence 2222224555666666666665544211 1111224555666555555 344444 5666777777
Q ss_pred cCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc---cCC
Q 007962 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE---AGE 381 (583)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~---~~~ 381 (583)
++++.+ .++. ..++. ..+
T Consensus 283 l~~n~~-~~p~----------------------------------------------------------~~~~~~~~~~~ 303 (520)
T 2z7x_B 283 VVSDVF-GFPQ----------------------------------------------------------SYIYEIFSNMN 303 (520)
T ss_dssp EEECCC-CSCT----------------------------------------------------------HHHHHHHHTCC
T ss_pred ccccce-ecch----------------------------------------------------------hhhhcccccCc
Confidence 666544 2110 11221 245
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC--CccCCCCcccEEeCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLS 459 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~ 459 (583)
|+.|++++|.+...+ ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++++. ..+.++++|++|+++
T Consensus 304 L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 777777777765543 12567788888888888877666666778888888888888776432 347778888888888
Q ss_pred CCccCC-CCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCC
Q 007962 460 YNIASL-PENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537 (583)
Q Consensus 460 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~ 537 (583)
+|.+.. .....+..+++|++|++++|.++ .++..+. ++|++|++++|.++.+|..+..+++|++|++++|+|+.+|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence 888876 44445777888888888888876 3333322 6899999999999988888778899999999999999888
Q ss_pred CCccccccccceeeccCCCCcc
Q 007962 538 PELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 538 ~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
+..+..+++|+.|++++|+++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhccCCcccEEECcCCCCcc
Confidence 8755555889999999999864
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=358.37 Aligned_cols=424 Identities=23% Similarity=0.275 Sum_probs=327.9
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~ 87 (583)
+.++++|+++++++.++...+.. +++|++|++++|.++.+ |..|.++++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 57899999999999999766544 78999999999999988 67899999999999999999998877
Q ss_pred hCCCCccEEEccCCcccc--CCccccccCcccEEEcCCCcCCcCCcccccCCCC--CEEEcccccc--C-CCCcccccCC
Q 007962 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~l~~l~ 160 (583)
.+++|++|++++|.++. +|..+.++++|++|++++|.+.. ..+..+++| ++|++++|.+ . ..+..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 57899999999999999999876 467788888 9999999988 3 4455555554
Q ss_pred -CCcEEEecCCcce-eechhhhcccccCcEEEcCCCc-------CCccchhhcCCccccEEEccCCcCcc-----cCCCC
Q 007962 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (583)
Q Consensus 161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~ 226 (583)
+...++++++.+. .+....+..+++|+.+++++|. +......++.+++|+.|+++++.+.. ++...
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 2335566666654 3444456778888888888875 32222356667777777777766541 11111
Q ss_pred cCCCCCcEEEcCCCCCc-cCchhh-----hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC-hhhccc--
Q 007962 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP-PEIGKM-- 297 (583)
Q Consensus 227 ~~~~~L~~L~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~-- 297 (583)
..++|++|++++|.+. .+|..+ +.+++|+.++++++. + .+| ..+..+
T Consensus 245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~----------------------~-~~p~~~~~~~~~ 300 (520)
T 2z7x_B 245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV----------------------F-GFPQSYIYEIFS 300 (520)
T ss_dssp -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC----------------------C-CSCTHHHHHHHH
T ss_pred -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccc----------------------e-ecchhhhhcccc
Confidence 1346666666666665 555555 555555555555544 3 333 223333
Q ss_pred -CCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhh
Q 007962 298 -TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376 (583)
Q Consensus 298 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 376 (583)
.+++.++++++.+.... ..
T Consensus 301 ~~~L~~L~l~~n~l~~~~------------------------------------------------------------~~ 320 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMVHML------------------------------------------------------------CP 320 (520)
T ss_dssp TCCCSEEEEESSCCCCCC------------------------------------------------------------CC
T ss_pred cCceeEEEcCCCcccccc------------------------------------------------------------ch
Confidence 56778887777542211 00
Q ss_pred hccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCcc-CCCCccCCCCc
Q 007962 377 WEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPM 452 (583)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~ 452 (583)
..+++|++|++++|.+++ +|..+..+++|++|++++|.+.++.. ..+..+++|+.|++++|.+.+ ++...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 236788999999998887 67788899999999999999987433 567899999999999999998 77777889999
Q ss_pred ccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007962 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531 (583)
Q Consensus 453 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~ 531 (583)
|++|++++|.+++..+..+. ++|+.|++++|+++.+|..++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 99999999998765443333 799999999999999999999999999999999999999876 889999999999999
Q ss_pred CCC
Q 007962 532 NIS 534 (583)
Q Consensus 532 ~l~ 534 (583)
+++
T Consensus 479 ~~~ 481 (520)
T 2z7x_B 479 PWD 481 (520)
T ss_dssp CBC
T ss_pred CCc
Confidence 887
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=375.31 Aligned_cols=468 Identities=25% Similarity=0.279 Sum_probs=382.5
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCC-cchhh-hHhhCCCCCCcEEEcCCCCCccc-ch
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PA 85 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~ 85 (583)
++++++|+++++++.++...+ ..+++|++|++++| .+..+ |..|+++++|++|+|++|.+..+ |.
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSF------------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSC------------SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCcCEEECCCCcCCccChhHC------------cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 578999999999998866443 34789999999999 45566 56899999999999999999976 77
Q ss_pred hhhCCCCccEEEccCCcccc-CCcc--ccccCcccEEEcCCCcCCcCC--cccccCCCCCEEEccccccCCC-CcccccC
Q 007962 86 AIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLADC 159 (583)
Q Consensus 86 ~~~~~~~L~~L~L~~~~l~~-l~~~--~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l 159 (583)
.|.++++|++|++++|.++. ++.. +.++++|++|++++|.+..++ ..++++++|++|++++|.+..+ +..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 99999999999999999874 5554 889999999999999998663 5789999999999999998753 4566666
Q ss_pred --CCCcEEEecCCcceeechhhhccccc------CcEEEcCCCcCCc-cchh----------------------------
Q 007962 160 --SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET---------------------------- 202 (583)
Q Consensus 160 --~~L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~---------------------------- 202 (583)
++|+.|++++|.+.......+..+++ |+.|++++|.+.. .+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999887655444555544 8999999886531 1111
Q ss_pred --------hcC--CccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccc
Q 007962 203 --------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCV 270 (583)
Q Consensus 203 --------l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~ 270 (583)
+.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 111 26899999999998855 56789999999999999999965 5678999999999999999987644
Q ss_pred ccc--cccccEEECcCCCCCCCCh-hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhh
Q 007962 271 EAC--QLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (583)
Q Consensus 271 ~~~--~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (583)
..+ ..+|+.|++++|.+..++. .+..+++|++|++++|.+..++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------------- 379 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------------------------------- 379 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------------------------------
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------------------------------
Confidence 332 3459999999999988765 48889999999999998764431
Q ss_pred hhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc--cccCCCCCcEEEccCCCCCCCChh-hhh
Q 007962 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-ILT 424 (583)
Q Consensus 348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~-~l~ 424 (583)
..+++.+.+++|.+..++.. ...++.+++++|.+..++. .+..+++|++|++++|.+...... .+.
T Consensus 380 --------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 380 --------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp --------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred --------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 24688999999999887654 5679999999999988654 356899999999999999875432 346
Q ss_pred cCCCCcEEecCCCCCccC-----CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCc
Q 007962 425 SLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499 (583)
Q Consensus 425 ~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 499 (583)
.+++|+.|++++|.+... ....|.++++|+.|++++|.++...+..+..+++|+.|+|++|.++.++..... ++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-AN 527 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SC
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-cc
Confidence 789999999999998743 334588899999999999999999998999999999999999999988776555 89
Q ss_pred ccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCC
Q 007962 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (583)
Q Consensus 500 L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~ 534 (583)
|+.|++++|.++.++.. .+.+|+.|++++|++.
T Consensus 528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence 99999999999976432 3468999999988654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-41 Score=353.84 Aligned_cols=450 Identities=20% Similarity=0.235 Sum_probs=361.6
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccch-h
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~-~ 86 (583)
+.++++|+++++++.++...+ ..+++|++|++++|.++.++ ..|.++++|++|++++|.+..++. .
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDL------------RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTT------------SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCccEEECcCCccCccChhhh------------hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 478999999999998876443 34789999999999999886 579999999999999999998876 5
Q ss_pred hhCCCCccEEEccCCcccc--CCccccccCcccEEEcCCCc-CCcCC-cccccCCCCCEEEccccccCC-CCcccccCCC
Q 007962 87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~-l~~~l~~l~~ 161 (583)
|+.+++|++|++++|.++. .|..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+.. ++..+..+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999999999999999984 46789999999999999998 66676 578999999999999999984 6778999999
Q ss_pred CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc---h-hhcCCccccEEEccCCcCc-----ccCCCCcCCCCC
Q 007962 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP---E-TIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL 232 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~-~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L 232 (583)
|++|+++++.+..++...+..+++|+.|++++|.+..++ . ....+++|+.|+++++.+. .++..+..+++|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 999999999988887776778999999999999987642 1 2345789999999999876 334556778999
Q ss_pred cEEEcCCCCCccCc-------hhhhCCCCCCEEEccCCcccccccc-------cccccccEEECcCCCCCCCChhh-ccc
Q 007962 233 AEFYMGNNALSALP-------AELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGLPPEI-GKM 297 (583)
Q Consensus 233 ~~L~l~~~~~~~l~-------~~l~~~~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~-~~~ 297 (583)
+.+++++|.+..++ ..+..+++++.+.+.++.+...... ....+++.+++++|.+..+|..+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 99999999876442 2356778999999998876643211 12345899999999988888776 578
Q ss_pred CCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh
Q 007962 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377 (583)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 377 (583)
++|++|++++|.+....... +..+.
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------------~~~~~ 358 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKN-------------------------------------------------------SACKG 358 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHH-------------------------------------------------------HTCTT
T ss_pred ccccEEEccCCccccccccc-------------------------------------------------------hhhhh
Confidence 99999999988764311000 01123
Q ss_pred ccCCccEEEcCCCCCCcCC---ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962 378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (583)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 454 (583)
.+++|++|++++|.++.++ ..+..+++|++|++++|+++.++. .+..+++|++|++++|.++.++... .++|+
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~ 434 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI---PQTLE 434 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTS---CTTCS
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccccchh---cCCce
Confidence 4567888888888887754 347778888888888888886654 3567888888888888888766442 36899
Q ss_pred EEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCC
Q 007962 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNI 533 (583)
Q Consensus 455 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l 533 (583)
+|++++|.+++. ...+++|++|++++|+++.+|. ...+++|++|++++|.++.++ ..+..+++|++|++++|++
T Consensus 435 ~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 435 VLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 999999988764 2578899999999999998876 467899999999999999765 4588999999999999987
Q ss_pred C
Q 007962 534 S 534 (583)
Q Consensus 534 ~ 534 (583)
.
T Consensus 510 ~ 510 (549)
T 2z81_A 510 D 510 (549)
T ss_dssp C
T ss_pred c
Confidence 5
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-42 Score=360.15 Aligned_cols=431 Identities=20% Similarity=0.299 Sum_probs=253.5
Q ss_pred cCccEEEcCCCcch-hhhHhhCCCCCCcEEEcCCCCCc-------------ccchhhhCCCCccEEEccCCccc-cCCcc
Q 007962 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAIGELHMLKSLDVSFNSIM-KIPDE 109 (583)
Q Consensus 45 ~~L~~L~ls~~~i~-~l~~~~~~~~~L~~L~L~~~~l~-------------~l~~~~~~~~~L~~L~L~~~~l~-~l~~~ 109 (583)
..++.|+|+++.++ .+|..++++++|++|+|++|.+. .+|... +..|+ ++++++.+. ..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 36788888888887 66778888888888888887542 122211 22333 333333222 11211
Q ss_pred ccc-cC------------------cccEEEcC--CCcCCcCCcccccCCCCCEEEccccccCC-----------------
Q 007962 110 IGS-AT------------------ALVKFDCS--SNQLKELPSSLGRCLNLSDFKASNNCITS----------------- 151 (583)
Q Consensus 110 ~~~-l~------------------~L~~L~l~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------- 151 (583)
+.. +. .++.+.+. +|.++.+|..++++++|++|++++|.+..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 110 11 11111111 23333445555555555555555555554
Q ss_pred -CCcccc--cCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCc-CCc--cchhhcCC------ccccEEEccCCcC
Q 007962 152 -LPEDLA--DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL-LNG--MPETIGSL------SRLIRLDLHQNRI 219 (583)
Q Consensus 152 -l~~~l~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~l~~~------~~L~~L~l~~~~~ 219 (583)
+|..+. ++++|++|++++|.+....+..+.++++|++|++++|. ++. +|..++.+ ++|+.|++++|.+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 555544 55555555555554443333334444555555555554 432 44433332 4444444444444
Q ss_pred cccCC--CCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcc
Q 007962 220 LSIPS--SISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296 (583)
Q Consensus 220 ~~~~~--~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 296 (583)
..+|. .+..+++|+.|++++|.+. .+| .++.+++|++|+ +++|.+..+|..+..
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~----------------------L~~N~l~~lp~~l~~ 374 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN----------------------LAYNQITEIPANFCG 374 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE----------------------CCSSEEEECCTTSEE
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE----------------------CCCCccccccHhhhh
Confidence 44443 3444444444444444444 333 333334444444 444444444555666
Q ss_pred cCC-CcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChh
Q 007962 297 MTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (583)
Q Consensus 297 ~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 375 (583)
+++ |++|++++|.+..++ ..
T Consensus 375 l~~~L~~L~Ls~N~l~~lp-----------------------------------------------------------~~ 395 (636)
T 4eco_A 375 FTEQVENLSFAHNKLKYIP-----------------------------------------------------------NI 395 (636)
T ss_dssp ECTTCCEEECCSSCCSSCC-----------------------------------------------------------SC
T ss_pred hcccCcEEEccCCcCcccc-----------------------------------------------------------hh
Confidence 666 666666666553222 11
Q ss_pred hhc--cCCccEEEcCCCCCCc-CCcccc-------CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCC
Q 007962 376 IWE--AGEITKLDLSRNSIQE-LPPELS-------SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445 (583)
Q Consensus 376 ~~~--~~~L~~L~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 445 (583)
+.. +++|++|++++|.+.. +|..+. .+++|++|++++|.++.++...+..+++|+.|++++|.++.++..
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 111 2356777777776655 444454 566788888888888877777777788888888888888877766
Q ss_pred ccCCCC-------cccEEeCCCCccCCCCCCCCC--CCCccceEecccccccccccchhccCcccEEeCCC------CcC
Q 007962 446 GFKDIP-------MLQILDLSYNIASLPENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSL 510 (583)
Q Consensus 446 ~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~------n~l 510 (583)
.+.... +|++|++++|.++.+ +..+. .+++|++|++++|.++.+|..+..+++|++|++++ |.+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred HhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 554433 888888888888744 33444 78888888888888888888888888888888844 554
Q ss_pred C-ccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHH
Q 007962 511 Q-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 564 (583)
Q Consensus 511 ~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 564 (583)
. .+|..+..+++|++|++++|+|+.+|..+. ++|+.|++++|++..++...
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTT
T ss_pred cccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHh
Confidence 4 678788888888888888888888887643 68888888888887776433
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.3e-42 Score=362.86 Aligned_cols=434 Identities=20% Similarity=0.251 Sum_probs=267.7
Q ss_pred cCccEEEcCCCcch-hhhHhhCCCCCCcEEEc-CCCCCccc-c-h-----------------------------------
Q 007962 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P-A----------------------------------- 85 (583)
Q Consensus 45 ~~L~~L~ls~~~i~-~l~~~~~~~~~L~~L~L-~~~~l~~l-~-~----------------------------------- 85 (583)
..++.|+|+++.++ .+|..++++++|++|+| ++|.+... + .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999998 77888999999999999 66654311 0 0
Q ss_pred ----hh-----------hCCCCccEEEccC--CccccCCccccccCcccEEEcCCCcCCc------------------CC
Q 007962 86 ----AI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (583)
Q Consensus 86 ----~~-----------~~~~~L~~L~L~~--~~l~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~ 130 (583)
.+ .....++.+.+.. |.++.+|..+.++++|+.|++++|.++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 00 1112233333332 4555677777778888888888887776 77
Q ss_pred cccc--cCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCc-cee--echhhhcccc-------cCcEEEcCCCcCC
Q 007962 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASWT-------MLTELIASKNLLN 197 (583)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~-i~~--~~~~~~~~~~-------~L~~L~l~~~~~~ 197 (583)
..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. +.. ++. .+..++ +|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC
Confidence 7766 7778888888777644 667777777778888887776 654 332 244443 7777777777777
Q ss_pred ccch--hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCC-CCEEEccCCccccccccccc
Q 007962 198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ 274 (583)
Q Consensus 198 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~ 274 (583)
.+|. .++.+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp----- 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP----- 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-----
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-----
Confidence 7776 6777777777777777777666 677777777777777777777766777776 777777777665443
Q ss_pred ccccEEECcCCCCCCCChhhcccC--CCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhh
Q 007962 275 LRLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352 (583)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (583)
..+.... +|++|++++|.+..........
T Consensus 636 -----------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~-------------------------------- 666 (876)
T 4ecn_A 636 -----------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS-------------------------------- 666 (876)
T ss_dssp -----------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC--------------------------------
T ss_pred -----------------hhhhccccCCCCEEECcCCcCCCccccchhh--------------------------------
Confidence 3333332 3666666666553211000000
Q ss_pred hccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc-cCCCCCcEEEccCCCCCCCChhhhhc------
Q 007962 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTS------ 425 (583)
Q Consensus 353 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~------ 425 (583)
......++|+.|++++|.+..+|..+ ..+++|+.|++++|.+..++...+..
T Consensus 667 ---------------------l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 667 ---------------------MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp ---------------------TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred ---------------------hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 00011234555555555555555433 25555666666666555444433322
Q ss_pred -CCCCcEEecCCCCCccCCCCccC--CCCcccEEeCCCCccCCCCCCCCCCCCccceEeccc------cccc-ccccchh
Q 007962 426 -LSSLSCLKLDNNPLRQVPSDGFK--DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR------MQLR-EAPTDIL 495 (583)
Q Consensus 426 -l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~l~-~~~~~~~ 495 (583)
+++|+.|++++|+++.++.. +. .+++|+.|++++|.++.+ +..+..+++|+.|+|++ |.+. .+|..+.
T Consensus 726 nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 22666666666666655543 33 566666666666666552 44455666666666655 4443 6667777
Q ss_pred ccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 496 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 496 ~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
.+++|+.|++++|.+..+|..+. ++|+.|++++|++..+....+.....+..+.+.+++.+.
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred cCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 77888888888887777776644 578888888887776654433222334444444444443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.4e-42 Score=358.22 Aligned_cols=438 Identities=18% Similarity=0.243 Sum_probs=287.0
Q ss_pred hhhceeeccCCcCC-CCChhhhhcccccCCCCCcccccCccEEEcCCCcch-------------hhhHhhCCCCCCcEEE
Q 007962 9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLKEDLRNLPLLTVLN 74 (583)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-------------~l~~~~~~~~~L~~L~ 74 (583)
..++.++++++++. .+|+.+ .++++|++|+|++|.+. .+|... +.+|+ ++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-------------~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~ 144 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-------------GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MH 144 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-------------GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-TH
T ss_pred CCEEEEEecCcccCCcCChHH-------------hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hh
Confidence 46788888888886 666544 34899999999999762 222211 23344 44
Q ss_pred cCCCCCc-ccchhhh-------------------CCCCccEEEcc--CCccccCCccccccCcccEEEcCCCcCCc----
Q 007962 75 VSHNKLS-ELPAAIG-------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE---- 128 (583)
Q Consensus 75 L~~~~l~-~l~~~~~-------------------~~~~L~~L~L~--~~~l~~l~~~~~~l~~L~~L~l~~~~~~~---- 128 (583)
++++.+. .++..+. ....++.+.+. .|.++.+|..++++++|++|++++|.++.
T Consensus 145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 224 (636)
T 4eco_A 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224 (636)
T ss_dssp HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence 4444333 1111111 11222333332 35666788888888888888888888887
Q ss_pred --------------CCcccc--cCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCc-cee-echhhhccc------
Q 007962 129 --------------LPSSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------ 183 (583)
Q Consensus 129 --------------~~~~~~--~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~-i~~-~~~~~~~~~------ 183 (583)
+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|. +.. ..+..+..+
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 888888 8899999999888765 678888889999999999887 774 223335554
Q ss_pred ccCcEEEcCCCcCCccch--hhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCC-CCEEE
Q 007962 184 TMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLD 259 (583)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~ 259 (583)
++|++|++++|.+..+|. .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 889999999999988888 8889999999999999988 788 888899999999999998888888888888 99999
Q ss_pred ccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCc
Q 007962 260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339 (583)
Q Consensus 260 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 339 (583)
+++|.++.++...... .+++|+++++++|.+.......+..
T Consensus 384 Ls~N~l~~lp~~~~~~--------------------~l~~L~~L~Ls~N~l~~~~p~~l~~------------------- 424 (636)
T 4eco_A 384 FAHNKLKYIPNIFDAK--------------------SVSVMSAIDFSYNEIGSVDGKNFDP------------------- 424 (636)
T ss_dssp CCSSCCSSCCSCCCTT--------------------CSSCEEEEECCSSCTTTTTTCSSCT-------------------
T ss_pred ccCCcCcccchhhhhc--------------------ccCccCEEECcCCcCCCcchhhhcc-------------------
Confidence 9888877655432211 1124444444444443221111100
Q ss_pred ccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCcc-ccCCCCCcEEEccCCCCCCC
Q 007962 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~ 418 (583)
.....+..++|++|++++|.++.+|.. +..+++|++|++++|.++.+
T Consensus 425 --------------------------------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 425 --------------------------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp --------------------------------TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred --------------------------------cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 000001223455555555555554443 23355555555555555544
Q ss_pred ChhhhhcC-------CCCcEEecCCCCCccCCCCcc-CCCCcccEEeCCCCccCCCCCCCCCCCCccceEecc------c
Q 007962 419 PDAILTSL-------SSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR------R 484 (583)
Q Consensus 419 ~~~~l~~l-------~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~------~ 484 (583)
+...+... ++|+.|++++|.++.++...+ ..+++|+.|++++|.++. .+..+..+++|++|+++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 43333322 266666666666665554322 256666666666666665 34455566666666664 4
Q ss_pred cccc-ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCC
Q 007962 485 MQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537 (583)
Q Consensus 485 ~~l~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~ 537 (583)
|.+. .+|..+..+++|++|++++|.++.+|..+. ++|++|++++|++..++
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 4443 677788888888888888888888887654 78899999998877554
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-41 Score=356.91 Aligned_cols=436 Identities=23% Similarity=0.321 Sum_probs=287.7
Q ss_pred CCCcEEEcCCCCCc-ccchhhhCCCCccEEEc-cCCccccC-Ccccccc----C-----cccE------EEcC-CCcCC-
Q 007962 68 PLLTVLNVSHNKLS-ELPAAIGELHMLKSLDV-SFNSIMKI-PDEIGSA----T-----ALVK------FDCS-SNQLK- 127 (583)
Q Consensus 68 ~~L~~L~L~~~~l~-~l~~~~~~~~~L~~L~L-~~~~l~~l-~~~~~~l----~-----~L~~------L~l~-~~~~~- 127 (583)
.+++.|+|+++.+. .+|+.++++++|++|+| ++|.+... +...... . .++. +... ...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999988 77889999999999999 77765421 1110000 0 0000 0000 00000
Q ss_pred -----------cCCcccccCCCCCEEEccc--cccCCCCcccccCCCCcEEEecCCccee------------------ec
Q 007962 128 -----------ELPSSLGRCLNLSDFKASN--NCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS 176 (583)
Q Consensus 128 -----------~~~~~~~~~~~L~~L~l~~--~~~~~l~~~l~~l~~L~~L~l~~~~i~~------------------~~ 176 (583)
..+........++.+.+.. |.+..+|..+.++++|++|++++|.+.. ++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0000000111222222221 3333344444445555555555444444 32
Q ss_pred hhhhc--ccccCcEEEcCCCcC-CccchhhcCCccccEEEccCCc-Ccc--cCCCC-------cCCCCCcEEEcCCCCCc
Q 007962 177 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSSI-------SGCCSLAEFYMGNNALS 243 (583)
Q Consensus 177 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~~-------~~~~~L~~L~l~~~~~~ 243 (583)
.. +. .+++|+.|++++|.+ ..+|..++.+++|+.|++++|. +.. +|..+ ..+++|+.|++++|.+.
T Consensus 483 ~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 22 22 455555555555543 3344455555555555555554 432 33322 23346666666666666
Q ss_pred cCch--hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCC-CcEEecCCCccccccccccCC
Q 007962 244 ALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNG 320 (583)
Q Consensus 244 ~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~ 320 (583)
.+|. .++.+++|++|++++|.+..++......+|+.|++++|.+..+|..+..+++ |++|++++|.+..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp------ 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP------ 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC------
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc------
Confidence 6666 6666666666666666666555222233466667777777777777888888 999999988765332
Q ss_pred CcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc--cCCccEEEcCCCCCCcCCcc
Q 007962 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEITKLDLSRNSIQELPPE 398 (583)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~~l~~~ 398 (583)
..+.. .++|+.|++++|.+...++.
T Consensus 636 -----------------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 636 -----------------------------------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -----------------------------------------------------SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -----------------------------------------------------hhhhccccCCCCEEECcCCcCCCcccc
Confidence 22222 23589999999988663322
Q ss_pred ----cc--CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCC-------CcccEEeCCCCccCC
Q 007962 399 ----LS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASL 465 (583)
Q Consensus 399 ----l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~ 465 (583)
+. .+++|+.|++++|.+..++...+..+++|+.|++++|.+..++...+... ++|+.|++++|.++.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 22 45689999999999999988888899999999999999998887655543 499999999999985
Q ss_pred CCCCCCC--CCCccceEecccccccccccchhccCcccEEeCCC------CcCC-ccchhhcCCCCCCEEeCCCCCCCcC
Q 007962 466 PENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISAL 536 (583)
Q Consensus 466 ~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~------n~l~-~l~~~l~~~~~L~~L~l~~~~l~~~ 536 (583)
+ +..+. .+++|+.|+|++|.++.+|..++.+++|+.|++++ |.+. .+|..+.++++|++|++++|+|+.+
T Consensus 743 l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 743 L-SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp C-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred c-hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 4 44555 89999999999999999999999999999999987 5555 7788999999999999999999999
Q ss_pred CCCccccccccceeeccCCCCccchhHHhcc
Q 007962 537 PPELGLLEPSLQALRLDGNPLRSIRRTILDR 567 (583)
Q Consensus 537 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 567 (583)
|..+. ++|+.|++++|++..++...+..
T Consensus 822 p~~l~---~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 822 DEKLT---PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred CHhhc---CCCCEEECCCCCCCccChHHccc
Confidence 98754 69999999999999888666533
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-41 Score=348.34 Aligned_cols=449 Identities=21% Similarity=0.214 Sum_probs=276.7
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~ 89 (583)
+++||++++++++|..++ +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|..
T Consensus 34 ~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT
T ss_pred cEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC
Confidence 566777777777666552 35677777777776665 4666777777777777766655 446666
Q ss_pred CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC--cccccCCCCCEEEccccccCCCCcccccCCCC--cEE
Q 007962 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L 165 (583)
+++|++|++++|.++.+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+... .+..+++| ++|
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L 174 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCI 174 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEE
Confidence 77777777777766666655 5666667777666666543 4666666666666666665532 33334444 666
Q ss_pred EecCCcc--eeechhhhcccc-cCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCC
Q 007962 166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242 (583)
Q Consensus 166 ~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (583)
++++|.+ .......+..+. ..-.+++++|.+.... ....+..+++|+.+++++|..
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~---------------------~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ---------------------VNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC---------------------CEEEESSEEEEEEEEEECCST
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhh---------------------hhhcccccceEEEeccccccc
Confidence 6666655 333322222221 0112233333332100 011233444555555555431
Q ss_pred -----ccCchhhhCCCCCCEEEccCCcccc-----cccccccccccEEECcCCCCC-CCChhh-----cccCCCcEEecC
Q 007962 243 -----SALPAELGKLSKLGTLDLHSNQLKE-----YCVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLT 306 (583)
Q Consensus 243 -----~~l~~~l~~~~~L~~L~l~~~~l~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~ 306 (583)
......+..+++|+.+++.++.+.. ++......++++|++++|.+. .+|..+ .+++.|+.+++.
T Consensus 234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 1223345566666666666554432 222222235666666666665 354443 334444444443
Q ss_pred CCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEE
Q 007962 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (583)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 386 (583)
.+.+ .++.. ....+....+|++|+
T Consensus 314 ~~~~-~~p~~-------------------------------------------------------~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 314 NQVF-LFSKE-------------------------------------------------------ALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECCC-SSCHH-------------------------------------------------------HHHHHHHTCCCSEEE
T ss_pred ccee-ecChh-------------------------------------------------------hhhhhhccCcceEEE
Confidence 3322 11000 000111224678888
Q ss_pred cCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC--CccCCCCcccEEeCCCCccC
Q 007962 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIAS 464 (583)
Q Consensus 387 l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 464 (583)
+++|.+...+ ....+++|++|++++|.+.+.....+..+++|+.|++++|.+++++. ..+.++++|++|++++|.+.
T Consensus 338 l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 338 ISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp EESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred ccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 8887765543 12567888888888888887666667888888888888888887653 34778888888888888887
Q ss_pred C-CCCCCCCCCCccceEecccccccc-cccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccc
Q 007962 465 L-PENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 542 (583)
Q Consensus 465 ~-~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 542 (583)
. .....+..+++|++|++++|.++. ++..+. ++|++|++++|.++.+|..+..+++|++|++++|+|+.+|+..+.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 494 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFD 494 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHh
Confidence 7 555567788888899988888863 333222 689999999999998888777889999999999999988887555
Q ss_pred cccccceeeccCCCCcc
Q 007962 543 LEPSLQALRLDGNPLRS 559 (583)
Q Consensus 543 ~~~~L~~L~l~~~~~~~ 559 (583)
.+++|+.|++++|+++.
T Consensus 495 ~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TCTTCCCEECCSCCBCC
T ss_pred cCCCCCEEEecCCCcCC
Confidence 55889999999998863
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-38 Score=318.39 Aligned_cols=405 Identities=26% Similarity=0.302 Sum_probs=196.3
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc-ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
.+.|++|++++|.+..+|..++++++|++|++++|.+. .+|..++.+++|+.+++..|.. .++++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEECT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEec
Confidence 46788888888888888888888888888888888776 6677777777764444443321 234666666
Q ss_pred CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchh
Q 007962 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (583)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (583)
+|.++.+|.. .++|++|++++|.+..+|.. .++|++|++++|.+..++.. .++|++|++++|.++.+| .
T Consensus 80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence 6666655542 25666666666666655532 35666666666666554321 146777777777666666 4
Q ss_pred hcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEEC
Q 007962 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (583)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 282 (583)
++.+++|++|++++|.+..+|..+ ++|++|++++|.+..+| .++.+++|++|++++|.++.++.. ..+++++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence 666777777777777766665433 46777777777777665 467777777777777777665442 246788888
Q ss_pred cCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccccee
Q 007962 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (583)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (583)
++|.+..++ .++.+++|+++++++|.+..++..
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---------------------------------------------- 255 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL---------------------------------------------- 255 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC----------------------------------------------
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCccccc----------------------------------------------
Confidence 888777776 477888888888888876433210
Q ss_pred ecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccC
Q 007962 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442 (583)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 442 (583)
.++|++|++++|.+..+|.. .++|++|++++|.+.+++. ..++|+.|++++|.++++
T Consensus 256 ----------------~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 256 ----------------PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL 312 (454)
T ss_dssp ----------------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE
T ss_pred ----------------ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc
Confidence 12344444444444444332 2444455554444443221 113455555555544433
Q ss_pred CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCc---cchhhcC
Q 007962 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS---IPEGFKN 519 (583)
Q Consensus 443 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~---l~~~l~~ 519 (583)
+. -.++|++|++++|.++.... .+++|++|++++|.++.+|. .+++|++|++++|.++. +|..+..
T Consensus 313 ~~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 313 CD----LPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred cC----CcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 21 01345555555554443211 13455555555555554444 24455555555555443 2333333
Q ss_pred C-------------CCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccc
Q 007962 520 L-------------TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560 (583)
Q Consensus 520 ~-------------~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 560 (583)
+ ++|++|++++|+++.++. .+++++.|.+.+|.+...
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~----iP~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDP 431 (454)
T ss_dssp EECCC-------------------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCcccc----chhhHhheeCcCcccCCc
Confidence 3 789999999998886543 235788888888876544
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-37 Score=329.65 Aligned_cols=477 Identities=21% Similarity=0.244 Sum_probs=367.3
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-h
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~ 86 (583)
+.++++|+++|+++.+|...+.. +++|++|+|++|.|+.+++ .|+++++|++|+|++|+++.+|. +
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 36899999999999999866543 7899999999999999965 79999999999999999999875 7
Q ss_pred hhCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCC-cccccCCC-
Q 007962 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK- 161 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~- 161 (583)
|.++++|++|++++|.++.++. .|+++++|++|++++|.+.. .|..+..+++|++|++++|.+..++ ..+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8999999999999999998875 58999999999999999874 4678899999999999999998653 34444433
Q ss_pred ---CcEEEecCCcceeechhhhcccccCcEEEcCCCcCC--ccchhhcCCc-----------------------------
Q 007962 162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS----------------------------- 207 (583)
Q Consensus 162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~----------------------------- 207 (583)
...++++.+.+..+....+.. ..++.+++.++... ..+..+..+.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 346788888888776653333 34455555554331 1111222222
Q ss_pred -cccEEEccCCcC----cccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEEC
Q 007962 208 -RLIRLDLHQNRI----LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (583)
Q Consensus 208 -~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 282 (583)
.+....+..+.. ......+....+++.+.+.++.+..++ .+.....++.|++.++.+..+.... ...++.+.+
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~L~~l~l 356 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTF 356 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCB-CTTCCEEEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCccc-chhhhhccc
Confidence 223232222211 133345566778899999888777653 4566789999999999887665432 345888888
Q ss_pred cCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccccee
Q 007962 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (583)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (583)
..+...... ....+++++.++++.+.+....... .......+++.+
T Consensus 357 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~---------------------------------~~~~~~~~L~~L 402 (635)
T 4g8a_A 357 TSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCS---------------------------------QSDFGTISLKYL 402 (635)
T ss_dssp ESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECC---------------------------------HHHHSCSCCCEE
T ss_pred ccccCCCCc-ccccccccccchhhccccccccccc---------------------------------cchhhhhhhhhh
Confidence 888766543 3456899999999998764332110 011123467888
Q ss_pred ecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (583)
Q Consensus 363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 440 (583)
++..+....++..+..++.|+.+++..+...... ..+..+++++.++++.|.+.......+..+++|+.|++++|.+.
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 8888887777777778899999999988765532 35778999999999999999888888899999999999999754
Q ss_pred -cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCcc-chhh
Q 007962 441 -QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGF 517 (583)
Q Consensus 441 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l-~~~l 517 (583)
.+....|..+++|++|++++|+++...+.+|..+++|++|+|++|+++.++. .+..+++|++|++++|.++.+ |+.+
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 3555668999999999999999999988899999999999999999998754 467899999999999999966 4567
Q ss_pred cCC-CCCCEEeCCCCCCC
Q 007962 518 KNL-TSLTELDLSDNNIS 534 (583)
Q Consensus 518 ~~~-~~L~~L~l~~~~l~ 534 (583)
..+ ++|++|++++|++.
T Consensus 563 ~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCCTTCCEEECTTCCBC
T ss_pred HhhhCcCCEEEeeCCCCc
Confidence 777 68999999998665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-37 Score=323.59 Aligned_cols=424 Identities=22% Similarity=0.239 Sum_probs=318.6
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~ 87 (583)
+.++++|+++++++.++...+.. +++|++|++++|.++.+ |..|.++++|++|++++|.++.+|..
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISF------------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTT------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCcCEEECCCCCccccChhhhcc------------CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 57899999999999999755443 78999999999999988 56799999999999999999999877
Q ss_pred hCCCCccEEEccCCccccCC--ccccccCcccEEEcCCCcCCcCCcccccCCCC--CEEEcccccc--C-CCCcccccCC
Q 007962 88 GELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~l~~l~ 160 (583)
.+++|++|++++|.++.++ ..+.++++|++|++++|.+... .+..+++| ++|++++|.+ . ..+..+..+.
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 8999999999999998754 7899999999999999998753 45666667 9999999988 4 3455566554
Q ss_pred -CCcEEEecCCccee-echhhhcccccCcEEEcCCCcC-----CccchhhcCCccccEEEccCCcCc-----ccCCCCcC
Q 007962 161 -KMSKLDVEGNKLTV-LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRIL-----SIPSSISG 228 (583)
Q Consensus 161 -~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~ 228 (583)
..-.+++++|.+.. +....+..+++|+.+++++|.. ......+..+++|+.+++.++.+. .++..+ .
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~ 274 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W 274 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-h
Confidence 11245667666553 3334466778888898888742 222345566777777777766544 122111 2
Q ss_pred CCCCcEEEcCCCCCc-cCchhh-----hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCCh-hhc---ccC
Q 007962 229 CCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIG---KMT 298 (583)
Q Consensus 229 ~~~L~~L~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~~ 298 (583)
.++|++|++++|.+. .+|..+ ..++.|+.+++..+. + .+|. .+. ...
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~----------------------~-~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV----------------------F-LFSKEALYSVFAEM 331 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC----------------------C-SSCHHHHHHHHHTC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccce----------------------e-ecChhhhhhhhccC
Confidence 236677777766665 555544 233333333333222 2 2221 111 125
Q ss_pred CCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc
Q 007962 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378 (583)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 378 (583)
++++++++++.+.... ....
T Consensus 332 ~L~~L~l~~n~~~~~~------------------------------------------------------------~~~~ 351 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV------------------------------------------------------------CPPS 351 (562)
T ss_dssp CCSEEEEESSCCCCCC------------------------------------------------------------CCSS
T ss_pred cceEEEccCCCccccc------------------------------------------------------------CccC
Confidence 6777777776542110 0023
Q ss_pred cCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCcc-CCCCccCCCCccc
Q 007962 379 AGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQ 454 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 454 (583)
+++|++|++++|.+++ +|..+..+++|++|++++|.+..+.. ..+..+++|+.|++++|.++. ++...+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 5688999999998887 66778899999999999999988654 457889999999999999998 7777788999999
Q ss_pred EEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCC
Q 007962 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533 (583)
Q Consensus 455 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l 533 (583)
+|++++|.+++..+..+. ++|++|++++|+++.+|..++.+++|++|++++|.++.+|.. +..+++|++|++++|++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999998765443332 799999999999999999888999999999999999999887 89999999999999987
Q ss_pred C
Q 007962 534 S 534 (583)
Q Consensus 534 ~ 534 (583)
.
T Consensus 510 ~ 510 (562)
T 3a79_B 510 D 510 (562)
T ss_dssp C
T ss_pred C
Confidence 6
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-37 Score=307.21 Aligned_cols=404 Identities=26% Similarity=0.283 Sum_probs=248.8
Q ss_pred HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhHhhCCCCCC-------------cEE
Q 007962 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TVL 73 (583)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~~~~~~~~L-------------~~L 73 (583)
.+.++++++++++++.+|..+. ++++|++|++++|.++ .+|..++++++| ++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~-------------~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAE-------------NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cccchhhhcccCchhhCChhHh-------------cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 4789999999999999998664 3789999999999988 678888888765 889
Q ss_pred EcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCC
Q 007962 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (583)
Q Consensus 74 ~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 153 (583)
++++|.++.+|.. .++|++|++++|.++.+|.. .++|++|++++|.++.++.. .++|++|++++|.+..+|
T Consensus 77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence 9999988887762 47889999999888887753 37889999999888877643 268899999998888887
Q ss_pred cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCc
Q 007962 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (583)
Q Consensus 154 ~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 233 (583)
.+..+++|++|++++|.+..++.. ..+|++|++++|.+..+| .++.+++|+.|++++|.+..+|... ++|+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE 218 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence 588888999999988888876542 358888888888888876 5788888888888888887766533 5788
Q ss_pred EEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccc
Q 007962 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313 (583)
Q Consensus 234 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 313 (583)
.|++++|.+..+| .++.+++|++|++++|.++.++.. ..+++++++++|.+.+++.. .++|+++++++|.+..+
T Consensus 219 ~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 219 SIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred EEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence 8888888888777 477888888888888887765542 34577777777777666543 25666777766655322
Q ss_pred cccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCC
Q 007962 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393 (583)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 393 (583)
+ .. .++|+.|++++|.++
T Consensus 293 ~-----------------------------------------------------------~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 293 S-----------------------------------------------------------EL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp S-----------------------------------------------------------CC---CTTCCEEECCSSCCS
T ss_pred c-----------------------------------------------------------Cc---CCcCCEEECcCCcCC
Confidence 1 10 146788888888777
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCC--CCCCC
Q 007962 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP--ENPPF 471 (583)
Q Consensus 394 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~ 471 (583)
.++.. .++|++|++++|++.+++. .+++|+.|++++|.++.++. .+++|++|++++|.++.. .+.
T Consensus 311 ~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~-- 377 (454)
T 1jl5_A 311 SLCDL---PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPE-- 377 (454)
T ss_dssp EECCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCT--
T ss_pred cccCC---cCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChH--
Confidence 65431 2578888888888877543 25788888888888887665 367888888888887763 222
Q ss_pred CCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCC
Q 007962 472 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534 (583)
Q Consensus 472 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~ 534 (583)
.+..|.. ++....+|. .+++|++|++++|.++.+|.. -++++.|.+.+|.+.
T Consensus 378 ----~l~~L~~-n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 378 ----SVEDLRM-NSHLAEVPE---LPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429 (454)
T ss_dssp ----TCCEEEC-CC-------------------------------------------------
T ss_pred ----HHHhhhh-ccccccccc---ccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence 2333322 112234443 247899999999999865432 146788888888766
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-35 Score=296.16 Aligned_cols=350 Identities=26% Similarity=0.413 Sum_probs=225.2
Q ss_pred CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 168 (583)
.+++|+.|++.++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 4568889999988888776 47888899999999998888876 8888899999999888887765 8888888888888
Q ss_pred CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (583)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 248 (583)
+|.+..++. +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|+.|++++|.+..++ .
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~ 194 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS-V 194 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-G
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-h
Confidence 888887765 778888888888888877765 367778888888763 333332 3667777777777777766553 3
Q ss_pred hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHH
Q 007962 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (583)
Q Consensus 249 l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 328 (583)
+..+++|++|++++|.+..... ++.+++|++|++++|.+..+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~--------------- 236 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-----------------------LGILTNLDELSLNGNQLKDI--------------- 236 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-----------------------GGGCTTCCEEECCSSCCCCC---------------
T ss_pred hccCCCCCEEEecCCccccccc-----------------------ccccCCCCEEECCCCCcccc---------------
Confidence 5666777777776666554433 33445555555555443211
Q ss_pred HHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEE
Q 007962 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408 (583)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L 408 (583)
..+..+++|++|++++|.+..++. +..+++|++|
T Consensus 237 ---------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 237 ---------------------------------------------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp ---------------------------------------------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred ---------------------------------------------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 112234455555555555554433 4555555555
Q ss_pred EccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc
Q 007962 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (583)
Q Consensus 409 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 488 (583)
++++|.+.+... +..+++|+.|++++|.+.+++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 555555555443 4555566666666555555433 4555566666666665554433 455566666666666655
Q ss_pred ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962 489 EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539 (583)
Q Consensus 489 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 539 (583)
.+ ..+..+++|+.|++++|.+++++. +..+++|++|++++|+++.+|..
T Consensus 345 ~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 345 DV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred Cc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 55 245556666666666666664433 55666666666666665554443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.7e-35 Score=295.48 Aligned_cols=347 Identities=25% Similarity=0.366 Sum_probs=198.4
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
+++++.|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +.++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 457888888888888776 47778888888888888887766 7888888888888888777665 77888888888888
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++. +.+..+.. +..+++|+.|++++|.+..++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence 88777754 777788888888887777664 46777777777775 23333322 555566666666666555443 24
Q ss_pred cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECc
Q 007962 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 283 (583)
..+++|+.|++++|.+..++. +..+++|+.|++++|.+..+ ..+..+++|++|++++|.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~------------------- 254 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ------------------- 254 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-------------------
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCc-------------------
Confidence 445555555555554443322 33344444444444444433 123333344443333333
Q ss_pred CCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceee
Q 007962 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (583)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (583)
+.+++. +..+++|++|++++|.+..++
T Consensus 255 ---l~~~~~-~~~l~~L~~L~l~~n~l~~~~------------------------------------------------- 281 (466)
T 1o6v_A 255 ---ISNLAP-LSGLTKLTELKLGANQISNIS------------------------------------------------- 281 (466)
T ss_dssp ---CCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------------------------------
T ss_pred ---cccchh-hhcCCCCCEEECCCCccCccc-------------------------------------------------
Confidence 333222 444455555555554432111
Q ss_pred cCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCC
Q 007962 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (583)
Q Consensus 364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 443 (583)
. +..+++|++|++++|.+.+++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++++
T Consensus 282 ----------~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 282 ----------P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp ----------G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred ----------c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence 1 2223445555555555554433 4455555555555555554433 345555555555555555442
Q ss_pred CCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccc
Q 007962 444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491 (583)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 491 (583)
.+..+++|++|++++|.+++..+ +..+++|+.|++++|.++.+|
T Consensus 348 --~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 348 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp --GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred --hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 24455555555555555544433 444555555555555554433
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-35 Score=296.76 Aligned_cols=380 Identities=22% Similarity=0.272 Sum_probs=265.8
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCc-cc-chhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAI 87 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~-~l-~~~~ 87 (583)
.+.++|++++++++|. + .++|++|++++|.++.+ +..|.++++|++|++++|.+. .+ +.+|
T Consensus 12 ~~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp TTEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred ccccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence 3568999999999998 4 25799999999999987 568999999999999999886 55 4579
Q ss_pred hCCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCc-CCc--ccccCCCCCEEEccccccCCC-Ccc-cccCCC
Q 007962 88 GELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPS--SLGRCLNLSDFKASNNCITSL-PED-LADCSK 161 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~l-~~~-l~~l~~ 161 (583)
.++++|++|++++|.++.+ |..+.++++|++|++++|.++. .+. .+..+++|++|++++|.+..+ +.. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 9999999999999998855 6789999999999999999874 333 378889999999999988866 333 788888
Q ss_pred CcEEEecCCcceeechhhhccc--ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCC
Q 007962 162 MSKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 239 (583)
|++|++++|.+..+....+..+ .+++.++++++.+..++...... .....+..+++|++|++++
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTT
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCC
Confidence 9999988888887766555554 45666666666655443211000 0001233456677777777
Q ss_pred CCCc-cCchhhhCC---CCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccc
Q 007962 240 NALS-ALPAELGKL---SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315 (583)
Q Consensus 240 ~~~~-~l~~~l~~~---~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 315 (583)
|.+. ..+..+... ++|+.++++++....... ....+...... .+
T Consensus 222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------~~~~~~~~~~~-----~~----- 269 (455)
T 3v47_A 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------------------GHTNFKDPDNF-----TF----- 269 (455)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----------------------TCCSSCCCCTT-----TT-----
T ss_pred CcccccchhhhhccccccceeeEeecccccccccc----------------------chhhhccCccc-----cc-----
Confidence 7666 334444332 677777776664332100 00000000000 00
Q ss_pred cccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc-
Q 007962 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE- 394 (583)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~- 394 (583)
.-...++|+++++++|.+..
T Consensus 270 -----------------------------------------------------------~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 270 -----------------------------------------------------------KGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp -----------------------------------------------------------GGGTTSCCCEEECCSSCCCEE
T ss_pred -----------------------------------------------------------ccccccCceEEEecCcccccc
Confidence 00012456777777777666
Q ss_pred CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (583)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 474 (583)
.+..+..+++|++|++++|.+.+.....|..+++|++|++++|.++++....|.++++|++|++++|.++...+..+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 34556777777788887777777766667777788888888887777766667777888888888887777767777778
Q ss_pred CccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962 475 PHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 475 ~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~ 511 (583)
++|++|++++|.++.+|.. +..+++|++|++++|.++
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 8888888888888776654 356788888888888776
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.2e-35 Score=293.33 Aligned_cols=352 Identities=21% Similarity=0.244 Sum_probs=222.0
Q ss_pred cccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEE
Q 007962 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (583)
Q Consensus 41 ~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~ 120 (583)
+.++++|++|++++|.++.+| .+.++++|++|++++|.++.++ ++.+++|++|++++|.++.++ +..+++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 444677777888777777775 5777777778888777777764 777777777777777777664 67777777777
Q ss_pred cCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-cceeechhhhcccccCcEEEcCCCcCCcc
Q 007962 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGM 199 (583)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (583)
+++|.++.++ +..+++|++|++++|.+..+ .+..+++|++|++++| .+..+ .+..+++|+.|++++|.++.+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 7777777664 66777777777777777765 3666777777777777 33333 155666666677766666665
Q ss_pred chhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccE
Q 007962 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279 (583)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~ 279 (583)
+ +..+++|+.|++++|.+..+ .+..+++|+.|++++|.+..+| ++.+++|+.|++++|.++.+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~----------- 248 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL----------- 248 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-----------
T ss_pred c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc-----------
Confidence 4 55566666666666666655 2555666666666666666554 55556666666665555443
Q ss_pred EECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccc
Q 007962 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (583)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (583)
+ .+.+++|+.++++.+.+
T Consensus 249 -----------~--~~~l~~L~~L~l~~n~L------------------------------------------------- 266 (457)
T 3bz5_A 249 -----------D--VSTLSKLTTLHCIQTDL------------------------------------------------- 266 (457)
T ss_dssp -----------C--CTTCTTCCEEECTTCCC-------------------------------------------------
T ss_pred -----------C--HHHCCCCCEEeccCCCC-------------------------------------------------
Confidence 2 23455566666555432
Q ss_pred ceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962 360 KELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (583)
Q Consensus 360 ~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 437 (583)
+.+++++|... .++ ...+++|+.|++++|.... +|. ..++|+.|+++ .+++|+.|++++|
T Consensus 267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N 328 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNT 328 (457)
T ss_dssp SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTC
T ss_pred CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCC
Confidence 22333333321 111 2335667777777765322 331 23344444433 3467778888888
Q ss_pred CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCC-ccchh
Q 007962 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG 516 (583)
Q Consensus 438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~ 516 (583)
++++++ +.++++|+.|++++|++++ ++.|..|.+++|.+... ..+..|..+++++|.++ .+|..
T Consensus 329 ~l~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 329 ELTELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChh
Confidence 777763 6677788888887777654 35566666777666643 24556777777777776 56544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.2e-34 Score=289.11 Aligned_cols=379 Identities=21% Similarity=0.233 Sum_probs=211.2
Q ss_pred cEEEccCCccccCCccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccC-CC-CcccccCCCCcEEEecCC
Q 007962 94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN 170 (583)
Q Consensus 94 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~l~~~ 170 (583)
+.++.+++.++.+|. + .++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..+..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 356666666666665 2 25677777777777655 456667777777777777664 33 344666677777777777
Q ss_pred cceeechhhhcccccCcEEEcCCCcCCc-cchh--hcCCccccEEEccCCcCccc-CCC-CcCCCCCcEEEcCCCCCccC
Q 007962 171 KLTVLSNNLIASWTMLTELIASKNLLNG-MPET--IGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL 245 (583)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--l~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~l 245 (583)
.+..+.+..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6666655556666666666666666543 2222 45555566666655555544 222 44555555555555554432
Q ss_pred -chhhhCC--CCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCc
Q 007962 246 -PAELGKL--SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (583)
Q Consensus 246 -~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (583)
+..+..+ ++|+.++++++.+..++....... ....+..+++|++|++++|.+....
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-------------~~~~~~~~~~L~~L~Ls~n~l~~~~-------- 228 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-------------KCGNPFKNTSITTLDLSGNGFKESM-------- 228 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-------------HHCCTTTTCEEEEEECTTSCCCHHH--------
T ss_pred ChhhhhccccccccccccccCcccccchhhcccc-------------ccccccccceeeeEecCCCcccccc--------
Confidence 2223222 334444444443332221110000 0001223456666666666543211
Q ss_pred HHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh---ccCCccEEEcCCCCCCcCCccc
Q 007962 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW---EAGEITKLDLSRNSIQELPPEL 399 (583)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~l~~~l 399 (583)
+..+. ...+|+.+++++|........
T Consensus 229 --------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 257 (455)
T 3v47_A 229 --------------------------------------------------AKRFFDAIAGTKIQSLILSNSYNMGSSFG- 257 (455)
T ss_dssp --------------------------------------------------HHHHHHHTTTCCEEEEECTTCTTTSCCTT-
T ss_pred --------------------------------------------------hhhhhccccccceeeEeeccccccccccc-
Confidence 01111 124566666666543321100
Q ss_pred cCCCCCcEEEccCCCCCCCChhhhh--cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCcc
Q 007962 400 SSCASLQTLILSRNKIKDWPDAILT--SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (583)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 477 (583)
.+.+.+.....+. ..++|+.+++++|.+.++....+..+++|++|++++|.+....+..+..+++|
T Consensus 258 ------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 258 ------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp ------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 0111111111111 23567777777777666665566667777777777777766666666777777
Q ss_pred ceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCC
Q 007962 478 QELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 555 (583)
Q Consensus 478 ~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 555 (583)
++|++++|.++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+|+.+++..+..+++|+.|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 7777777777655 34556677777777777777755 556777777777777777777777766555577777777777
Q ss_pred CCcc
Q 007962 556 PLRS 559 (583)
Q Consensus 556 ~~~~ 559 (583)
+++.
T Consensus 406 ~l~~ 409 (455)
T 3v47_A 406 PWDC 409 (455)
T ss_dssp CBCC
T ss_pred Cccc
Confidence 7653
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-33 Score=282.27 Aligned_cols=259 Identities=27% Similarity=0.350 Sum_probs=225.9
Q ss_pred HHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc
Q 007962 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (583)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~ 84 (583)
+.+.+.++++|+++++++++|. + ..+++|++|++++|.++.++ ++++++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~-l-------------~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTG-I-------------EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTT-G-------------GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccChh-h-------------cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 4567899999999999999873 3 22789999999999999985 999999999999999999884
Q ss_pred hhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc-ccCCCCcccccCCCCc
Q 007962 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMS 163 (583)
Q Consensus 85 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~l~~l~~L~ 163 (583)
++.+++|++|++++|.++.++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 899999999999999999875 899999999999999999874 889999999999999 45555 578899999
Q ss_pred EEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc
Q 007962 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (583)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (583)
+|++++|.+..++ +..+++|+.|++++|.++.++ ++.+++|+.|++++|.+..+| +..+++|+.|++++|.+.
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9999999999876 788999999999999998873 788999999999999999986 889999999999999999
Q ss_pred cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCC-CChhhcccCCCcEEecCCCcc
Q 007962 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310 (583)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 310 (583)
.++ ++.+++|+.++++.+. ++.+++++|...+ ++ ++.+++|+.|++++|..
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 875 5678999999988764 4566777776544 33 46788999999988853
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-32 Score=264.42 Aligned_cols=307 Identities=25% Similarity=0.357 Sum_probs=216.0
Q ss_pred cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEE
Q 007962 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235 (583)
Q Consensus 156 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 235 (583)
+..+++|++|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 3445666666666666655543 5555566666666665555544 555555555555555555442 34555555555
Q ss_pred EcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccc
Q 007962 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315 (583)
Q Consensus 236 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 315 (583)
++++|.+..++. +..+++|++|++++| ........+..+++|+++++++|.+..+.
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n----------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~- 171 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGAN----------------------HNLSDLSPLSNMTGLNYLTVTESKVKDVT- 171 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTC----------------------TTCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred ECcCCcccCchh-hccCCceeEEECCCC----------------------CCcccccchhhCCCCcEEEecCCCcCCch-
Confidence 555555554433 444455555554444 33333334667778888888777653221
Q ss_pred cccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcC
Q 007962 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395 (583)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 395 (583)
. +..+++|++|++++|.+.++
T Consensus 172 ----------------------------------------------------------~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 172 ----------------------------------------------------------P-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ----------------------------------------------------------G-GGGCTTCSEEECTTSCCCCC
T ss_pred ----------------------------------------------------------h-hccCCCCCEEEccCCccccc
Confidence 1 34567888888888888877
Q ss_pred CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCC
Q 007962 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (583)
Q Consensus 396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 475 (583)
+. +..+++|+.+++++|.+.+... +..+++|+.|++++|.++.++. +..+++|++|++++|.++.. ..+..++
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 65 7788899999999998888765 6888999999999999888765 78899999999999988775 3578899
Q ss_pred ccceEecccccccccccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccC
Q 007962 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 554 (583)
Q Consensus 476 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 554 (583)
+|++|++++|.++.++ .+..+++|+.|++++|.++.. +..+..+++|++|++++|+++.+++ +. .+++|+.|++++
T Consensus 266 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LA-SLSKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GG-GCTTCSEESSSC
T ss_pred CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hh-hhhccceeehhh
Confidence 9999999999999874 578899999999999999854 5668899999999999999998877 33 348999999999
Q ss_pred CCCcc
Q 007962 555 NPLRS 559 (583)
Q Consensus 555 ~~~~~ 559 (583)
|+|++
T Consensus 343 N~i~~ 347 (347)
T 4fmz_A 343 QVIKK 347 (347)
T ss_dssp C----
T ss_pred hcccC
Confidence 99863
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=265.32 Aligned_cols=305 Identities=23% Similarity=0.338 Sum_probs=218.8
Q ss_pred ccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (583)
Q Consensus 42 ~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l 121 (583)
.++++|+.|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 34678888888888888775 37778888888888888887766 888888888888888877764 5778888888888
Q ss_pred CCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch
Q 007962 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (583)
Q Consensus 122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (583)
++|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+.. +..+++|++|++++|.+..++.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 8888877755 777888888888888555444457778888888888887776655 6777777777777777776654
Q ss_pred hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEE
Q 007962 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281 (583)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~ 281 (583)
+..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------------- 258 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI------------- 258 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-------------
T ss_pred -ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-------------
Confidence 6667777777777777665543 6666777777777777766654 66666777766666655543
Q ss_pred CcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccce
Q 007962 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361 (583)
Q Consensus 282 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (583)
+.+..+++|+++++++|.+..+
T Consensus 259 ----------~~~~~l~~L~~L~l~~n~l~~~------------------------------------------------ 280 (347)
T 4fmz_A 259 ----------NAVKDLTKLKMLNVGSNQISDI------------------------------------------------ 280 (347)
T ss_dssp ----------GGGTTCTTCCEEECCSSCCCCC------------------------------------------------
T ss_pred ----------hhHhcCCCcCEEEccCCccCCC------------------------------------------------
Confidence 2355667777777777755322
Q ss_pred eecCCCCCccCChhhhccCCccEEEcCCCCCCcC-CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (583)
Q Consensus 362 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 440 (583)
..+..+++|++|++++|.+... +..+..+++|++|++++|.+++..+ +..+++|+.+++++|+++
T Consensus 281 ------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 ------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 1233456777777777777653 3456777888888888888877665 577888888888888764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.1e-31 Score=262.52 Aligned_cols=305 Identities=22% Similarity=0.263 Sum_probs=162.8
Q ss_pred CCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEE
Q 007962 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 213 (583)
Q Consensus 136 ~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~ 213 (583)
++++++|+++++.+..+|.. +..+++|++|+++++.+..+....+..+++|++|++++|.+..++ ..++.+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45556666666655555443 455566666666666555555544555555555555555554443 2344555555555
Q ss_pred ccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCc-hhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (583)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (583)
+++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.++. +
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~- 180 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----------------------V- 180 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----------------------C-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----------------------c-
Confidence 555555544433 344555555555555554332 234444555555544444332 2
Q ss_pred hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (583)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (583)
.+..+++|+++++++|.+..++
T Consensus 181 -~~~~l~~L~~L~l~~n~l~~~~--------------------------------------------------------- 202 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLLSTLA--------------------------------------------------------- 202 (390)
T ss_dssp -CGGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred -ccccccccceeecccccccccC---------------------------------------------------------
Confidence 1334556666666665442210
Q ss_pred CChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCC
Q 007962 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (583)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 451 (583)
..+.|++|++++|.+..++.. ..++|+.|++++|.+++.. .+..+++|++|++++|.+.++....|.+++
T Consensus 203 ------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 203 ------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp ------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 123566677777666655432 2356666777666666542 345666666666666666665555556666
Q ss_pred cccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC
Q 007962 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (583)
Q Consensus 452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~ 531 (583)
+|++|++++|.++... ..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ +..+++|++|++++|
T Consensus 273 ~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 273 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 6666666666554432 1234455555555555555555555555555555555555555443 444555555555555
Q ss_pred CCC
Q 007962 532 NIS 534 (583)
Q Consensus 532 ~l~ 534 (583)
++.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-30 Score=258.69 Aligned_cols=309 Identities=22% Similarity=0.263 Sum_probs=242.5
Q ss_pred cCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccccEEEccCCcCcccC-CCCcCCCCCcEE
Q 007962 158 DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEF 235 (583)
Q Consensus 158 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 235 (583)
.+++++.|+++++.+..++...+..+++|++|+++++.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35788888998888888888888888889999999888877654 6788888999999988888664 457888889999
Q ss_pred EcCCCCCccCchh-hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccccc
Q 007962 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314 (583)
Q Consensus 236 ~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (583)
++++|.+..+|.. +..+++|++|++++|.+..++ +..+..+++|++|++++|.+..++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTSSCTTCCEEECCSSCCSBCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC---------------------hhhccCCCCCCEEECCCCcCCccc
Confidence 9998888887765 578888888888887765432 224667788888888887663221
Q ss_pred ccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc
Q 007962 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394 (583)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 394 (583)
+..+++|+.+++++|.++.
T Consensus 182 -------------------------------------------------------------~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 182 -------------------------------------------------------------LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp -------------------------------------------------------------GGGCTTCSEEECCSSCCSE
T ss_pred -------------------------------------------------------------cccccccceeecccccccc
Confidence 2235678888888887765
Q ss_pred CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (583)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 474 (583)
+ ...++|+.|++++|.+...+. ...++|+.|++++|.+++. ..+..+++|++|++++|.+....+..+..+
T Consensus 201 ~----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 201 L----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp E----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred c----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 4 234678888998888877644 3357888899988888876 347788889999999888887777778888
Q ss_pred CccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccC
Q 007962 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 554 (583)
Q Consensus 475 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 554 (583)
++|++|++++|.++.++..+..+++|++|++++|.++.+|..+..+++|++|++++|+|+.++.. .+++|+.|++++
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~L~~L~l~~ 348 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSH 348 (390)
T ss_dssp SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC---TTCCCSEEECCS
T ss_pred ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCch---hhccCCEEEcCC
Confidence 88999999999888887777788889999999998888887788888899999999988877632 337888999999
Q ss_pred CCCccc
Q 007962 555 NPLRSI 560 (583)
Q Consensus 555 ~~~~~~ 560 (583)
|+++..
T Consensus 349 N~~~~~ 354 (390)
T 3o6n_A 349 NDWDCN 354 (390)
T ss_dssp SCEEHH
T ss_pred CCccch
Confidence 888654
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=264.71 Aligned_cols=314 Identities=22% Similarity=0.317 Sum_probs=165.0
Q ss_pred cEEEcCCCCCcccchhhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccc
Q 007962 71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNC 148 (583)
Q Consensus 71 ~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 148 (583)
+.++.++..++.+|..+. +++++|++++|.++.+ +..|.++++|++|++++|.+..+ +..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666666666665442 4666677766666644 34566666666666666666544 4455666666666666666
Q ss_pred cCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCccc-CCCC
Q 007962 149 ITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSI 226 (583)
Q Consensus 149 ~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~ 226 (583)
+..++. .+..+++|++|++++|.+..+....+..+ ++|+.|++++|.+..+ +..+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-----------------------YNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-----------------------TTCCEEEECCTTCCEECTTSS
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHcccc-----------------------ccCCEEECCCCccceeChhhc
Confidence 655543 24555556666665555555444434444 4444444444444432 2344
Q ss_pred cCCCCCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEec
Q 007962 227 SGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (583)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 305 (583)
..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++. ..+..+++|++|++
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~---------------------~~~~~l~~L~~L~l 207 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD---------------------YSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT---------------------TCSCSCTTCCEEEE
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh---------------------hhcccCcccceeeC
Confidence 555555555555555554443 35566666666666665543221 12444555666666
Q ss_pred CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEE
Q 007962 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L 385 (583)
++|.... .++.......+|++|
T Consensus 208 ~~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 208 SHWPYLD----------------------------------------------------------TMTPNCLYGLNLTSL 229 (477)
T ss_dssp ECCTTCC----------------------------------------------------------EECTTTTTTCCCSEE
T ss_pred CCCcccc----------------------------------------------------------ccCcccccCccccEE
Confidence 5543210 011111112245555
Q ss_pred EcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC
Q 007962 386 DLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (583)
Q Consensus 386 ~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 464 (583)
++++|.++.++. .+..+++|++|++++|.+.......|..+++|+.|++++|.+..+....|.++++|++|++++|.++
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 555555555442 3445555555555555555544444555555555555555555554444555555555555555555
Q ss_pred CCCCCCCCCCCccceEeccccccc
Q 007962 465 LPENPPFSSLPHLQELYLRRMQLR 488 (583)
Q Consensus 465 ~~~~~~~~~l~~L~~L~l~~~~l~ 488 (583)
......+..+++|++|++++|.+.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred eeCHhHcCCCcccCEEEccCCCcc
Confidence 544444555555555555555444
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=260.58 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=232.5
Q ss_pred cEEEcCCCcCCcCCcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCc
Q 007962 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (583)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (583)
+.++++++.++.+|..+. +++++|++++|.+..+ +..+..+++|++|++++|.+..+.+.+|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456667777777765443 5677777777777655 3456777777777777777777666667777777777777776
Q ss_pred CCccch-hhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccc
Q 007962 196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA 272 (583)
Q Consensus 196 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~ 272 (583)
+..++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc------
Confidence 666554 345666666666666666644 34556666666666666666533 334555566666665555443
Q ss_pred ccccccEEECcCCCCCCCCh-hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhh
Q 007962 273 CQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (583)
Q Consensus 273 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 351 (583)
.++. .+.++++|+.|++++|.+..+...
T Consensus 166 ----------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~----------------------------------- 194 (477)
T 2id5_A 166 ----------------SIPTEALSHLHGLIVLRLRHLNINAIRDY----------------------------------- 194 (477)
T ss_dssp ----------------SCCHHHHTTCTTCCEEEEESCCCCEECTT-----------------------------------
T ss_pred ----------------ccChhHhcccCCCcEEeCCCCcCcEeChh-----------------------------------
Confidence 4333 377788899999888876543221
Q ss_pred hhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCC-cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCc
Q 007962 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430 (583)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 430 (583)
.+..+++|+.|++++|... .++.......+|++|++++|.++.++...+..+++|+
T Consensus 195 -----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 195 -----------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp -----------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred -----------------------hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 2334678999999998644 4666555667999999999999999988899999999
Q ss_pred EEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCc
Q 007962 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNS 509 (583)
Q Consensus 431 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~ 509 (583)
.|++++|.++.++...|.++++|++|++++|.+....+.++..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 999999999999888899999999999999999998888999999999999999999988765 4678999999999998
Q ss_pred CC
Q 007962 510 LQ 511 (583)
Q Consensus 510 l~ 511 (583)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 87
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6e-30 Score=266.96 Aligned_cols=305 Identities=23% Similarity=0.263 Sum_probs=212.9
Q ss_pred CCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccccEEE
Q 007962 136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD 213 (583)
Q Consensus 136 ~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 213 (583)
+++++.++++++.+..+|.. +..+++|++|++++|.+..+....|..+++|+.|++++|.+..++. .++.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666666666655543 4556666666666666666665556666666666666666655443 345566666666
Q ss_pred ccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (583)
Q Consensus 214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (583)
+++|.+..+|.. +..+++|+.|++++|.+..++. .++.+++|++|++++|.++. ++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~ 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----------------------VD 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----------------------CC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----------------------cC
Confidence 666666655443 3556666666666665554432 45555556655555554433 21
Q ss_pred hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (583)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (583)
++.+++|+.+++++|.+..+
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l---------------------------------------------------------- 207 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTL---------------------------------------------------------- 207 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred --hhhhhhhhhhhcccCccccc----------------------------------------------------------
Confidence 34566777777777755322
Q ss_pred CChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCC
Q 007962 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (583)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 451 (583)
...+.|+.|++++|.+..++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.++....|..++
T Consensus 208 -----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred -----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 11346888999998887765433 36899999999988875 4468899999999999999888777788899
Q ss_pred cccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC
Q 007962 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531 (583)
Q Consensus 452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~ 531 (583)
+|+.|++++|.++.. +..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.++.++ +..+++|++|++++|
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 999999999988765 33456688999999999988888888888899999999999888775 667888999999998
Q ss_pred CCC
Q 007962 532 NIS 534 (583)
Q Consensus 532 ~l~ 534 (583)
++.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 776
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.7e-29 Score=263.62 Aligned_cols=306 Identities=20% Similarity=0.255 Sum_probs=233.0
Q ss_pred ccCcccEEEcCCCcCCcCCcc-cccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEE
Q 007962 112 SATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189 (583)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 189 (583)
.+.+++.++++++.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++..|+.+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356788888888888877754 577888888888888888665 378888888888888888888888778888888888
Q ss_pred EcCCCcCCccchh-hcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccc
Q 007962 190 IASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 190 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 267 (583)
++++|.+..+|.. ++.+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++ +..+++|+.+++++|.+..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 8888888877765 477888888888888887664 45788888888888888888663 5567788888887776543
Q ss_pred cccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhh
Q 007962 268 YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347 (583)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (583)
+ ...++|++|++++|.+..++..
T Consensus 207 l--------------------------~~~~~L~~L~ls~n~l~~~~~~------------------------------- 229 (597)
T 3oja_B 207 L--------------------------AIPIAVEELDASHNSINVVRGP------------------------------- 229 (597)
T ss_dssp E--------------------------ECCTTCSEEECCSSCCCEEECS-------------------------------
T ss_pred c--------------------------cCCchhheeeccCCcccccccc-------------------------------
Confidence 2 1233566777776655332210
Q ss_pred hhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCC
Q 007962 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLS 427 (583)
Q Consensus 348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~ 427 (583)
..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..|..++
T Consensus 230 ------------------------------~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 230 ------------------------------VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp ------------------------------CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ------------------------------cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 024688888888888774 4677888888888888888887777778888
Q ss_pred CCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCC
Q 007962 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ 507 (583)
Q Consensus 428 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 507 (583)
+|+.|++++|.++.++.. +..+++|+.|++++|.+... +..+..+++|+.|++++|.++.++ +..+++|+.|++++
T Consensus 279 ~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 279 RLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp SCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 888888888888887554 56688888888888888754 334567788888888888888764 56778888888888
Q ss_pred CcCC
Q 007962 508 NSLQ 511 (583)
Q Consensus 508 n~l~ 511 (583)
|.+.
T Consensus 355 N~~~ 358 (597)
T 3oja_B 355 NDWD 358 (597)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 8876
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.4e-29 Score=240.44 Aligned_cols=280 Identities=21% Similarity=0.294 Sum_probs=239.1
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~ 86 (583)
+.+++++|++++++.+|..++ +++++|++++|.++.++. .|.++++|++|++++|.++.+ |..
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 367899999999999998663 479999999999998875 799999999999999999987 678
Q ss_pred hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccC---CCCcccccCCCC
Q 007962 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKM 162 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~l~~L 162 (583)
|..+++|++|++++|.++.+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+. ..+..+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 9999999999999999998887765 799999999999997764 5889999999999999886 345678899999
Q ss_pred cEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCC
Q 007962 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN 240 (583)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 240 (583)
++|++++|.+..++...+ ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|
T Consensus 174 ~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 999999999998776432 7899999999999776 5678899999999999999987654 7889999999999999
Q ss_pred CCccCchhhhCCCCCCEEEccCCccccccccccc--------ccccEEECcCCCCCC---CChhhcccCCCcEEecCCC
Q 007962 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGN 308 (583)
Q Consensus 241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~ 308 (583)
.+..+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+.. .+..+..+.+++.+++++|
T Consensus 251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 9999999999999999999999999987765542 347889999988764 3345777888999998876
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.6e-28 Score=233.95 Aligned_cols=288 Identities=24% Similarity=0.312 Sum_probs=181.0
Q ss_pred ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEcc
Q 007962 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (583)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~ 261 (583)
.+++.++++++.++.+|..+. ++++.|++++|.+..++. .+..+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 357777777777777765443 577888888888776654 577788888888888888766 6678888888888888
Q ss_pred CCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcc
Q 007962 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (583)
Q Consensus 262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (583)
+|.++.++...+ .+|++|++++|.+..++.. +.++++|+++++++|.+...+
T Consensus 109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 161 (330)
T 1xku_A 109 KNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------------- 161 (330)
T ss_dssp SSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--------------------------
T ss_pred CCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC--------------------------
Confidence 887776654433 4566666666665554432 555666666666655442110
Q ss_pred cccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh
Q 007962 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (583)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 420 (583)
..+..+..+++|++|++++|.++.++.
T Consensus 162 -----------------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 162 -----------------------------------------------------IENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp -----------------------------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred -----------------------------------------------------cChhhccCCCCcCEEECCCCccccCCc
Confidence 112233444444455554444444333
Q ss_pred hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcc
Q 007962 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500 (583)
Q Consensus 421 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L 500 (583)
.. .++|++|++++|.++++....|.++++|++|++++|.++...+..+..+++|++|++++|.++.+|..+..+++|
T Consensus 189 ~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 189 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 21 245666666666665555555666666666666666665555555666677777777777777777667777777
Q ss_pred cEEeCCCCcCCccchh-hc------CCCCCCEEeCCCCCCC--cCCCCccccccccceeeccCCC
Q 007962 501 RILDLSQNSLQSIPEG-FK------NLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 556 (583)
Q Consensus 501 ~~L~l~~n~l~~l~~~-l~------~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~ 556 (583)
++|++++|.++.++.. +. ..+.|+.|++++|++. .+++..+..+.+++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777777765432 21 2467888888888776 3666666666888888888774
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8e-29 Score=239.36 Aligned_cols=278 Identities=27% Similarity=0.365 Sum_probs=223.9
Q ss_pred hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhh
Q 007962 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI 87 (583)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~ 87 (583)
.++.++|++++++.+|..++ +++++|++++|.++.++ ..|.++++|++|++++|.++.+ +.+|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 57888999998888888663 46899999999998875 4788999999999999988877 5688
Q ss_pred hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccC---CCCcccccCCCCc
Q 007962 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~l~~L~ 163 (583)
..+++|++|++++|.++.+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+. ..+..+..+ +|+
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 899999999999998888887665 789999999999887765 5788999999999998886 334556666 899
Q ss_pred EEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCC
Q 007962 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (583)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 241 (583)
+|++++|.+..++.... ++|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus 176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 99999998888765422 68899999999887765 567888899999999998887654 68888999999999999
Q ss_pred CccCchhhhCCCCCCEEEccCCccccccccccc--------ccccEEECcCCCCC--C-CChhhcccCCCcEEecCCC
Q 007962 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGN 308 (583)
Q Consensus 242 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------~~L~~L~l~~~~~~--~-~~~~~~~~~~L~~L~l~~~ 308 (583)
+..+|..+..+++|++|++++|.++.++...+. ..++.+++.+|.+. . .+..+..+++|+.+++++|
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 998888888899999999999988877654432 34788899888776 3 3445777888888888876
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.5e-28 Score=234.88 Aligned_cols=287 Identities=23% Similarity=0.300 Sum_probs=191.0
Q ss_pred ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEcc
Q 007962 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (583)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~ 261 (583)
.+++.++++++.+..+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.+..+ +..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367778888877777776553 67888888888887663 4678888888888888888855 5678888888888888
Q ss_pred CCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcc
Q 007962 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (583)
Q Consensus 262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (583)
+|.++.++.... .+|++|++++|.+..++.. +.++++|++|++++|.+...+
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 163 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-------------------------- 163 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------------
T ss_pred CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------------
Confidence 887776655443 4566666666665554433 555556666665555442110
Q ss_pred cccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh
Q 007962 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (583)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 420 (583)
..+..+..+ +|++|++++|.++.++.
T Consensus 164 -----------------------------------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 164 -----------------------------------------------------FEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp -----------------------------------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred -----------------------------------------------------CCcccccCC-ccCEEECcCCCCCccCc
Confidence 112223333 55555555555555443
Q ss_pred hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcc
Q 007962 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500 (583)
Q Consensus 421 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L 500 (583)
.. .++|++|++++|.++.+....|.++++|++|++++|.+....+..+..+++|++|++++|.++.+|..+..+++|
T Consensus 190 ~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 190 DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 21 256666666666666666556677777777777777777666666777778888888888888777777788888
Q ss_pred cEEeCCCCcCCccchh-hcC------CCCCCEEeCCCCCCC--cCCCCccccccccceeeccCCC
Q 007962 501 RILDLSQNSLQSIPEG-FKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 556 (583)
Q Consensus 501 ~~L~l~~n~l~~l~~~-l~~------~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~ 556 (583)
++|++++|.++.++.. +.. .++|+.|++++|++. .+++..+..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8888888888766432 322 467888888888777 6666666667888888888874
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-30 Score=264.14 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=204.4
Q ss_pred hhhceeeccCCcCCCCChhh-hhcccccCCCCCcccccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc
Q 007962 9 RTSGSLNLSNRSLRDVPNEV-YKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~ 82 (583)
+.++++|++++++++.+... +. .+++|++|++++|.++ .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~------------~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLP------------LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHH------------HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHh------------hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 45788999999888665332 22 2678999999999888 456778889999999999998874
Q ss_pred c--chhhhCCC----CccEEEccCCccc-----cCCccccccCcccEEEcCCCcCCcC-Ccc-----cccCCCCCEEEcc
Q 007962 83 L--PAAIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-PSS-----LGRCLNLSDFKAS 145 (583)
Q Consensus 83 l--~~~~~~~~----~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~-~~~-----~~~~~~L~~L~l~ 145 (583)
. ...+..++ +|++|++++|.++ .++..+..+++|++|++++|.+... +.. ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 2 22334455 6999999999887 3567788899999999999987632 121 2235679999999
Q ss_pred ccccCC-----CCcccccCCCCcEEEecCCcceeechhhhc-----ccccCcEEEcCCCcCCc-----cchhhcCCcccc
Q 007962 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (583)
Q Consensus 146 ~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~ 210 (583)
+|.+.. ++..+..+++|++|++++|.+.......+. ..++|++|++++|.+.. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 998773 455677789999999999887765444333 25589999999998865 466677788999
Q ss_pred EEEccCCcCccc------CCCCcCCCCCcEEEcCCCCCcc-----CchhhhCCCCCCEEEccCCccccccccccc-----
Q 007962 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ----- 274 (583)
Q Consensus 211 ~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~----- 274 (583)
+|++++|.+... +..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+.......
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 999999877632 2223457889999999888885 566777788899999888877643322111
Q ss_pred --ccccEEECcCCCCCC-----CChhhcccCCCcEEecCCCcc
Q 007962 275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL 310 (583)
Q Consensus 275 --~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~ 310 (583)
.+|++|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 245666666665544 223344455555555555544
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-30 Score=265.12 Aligned_cols=301 Identities=21% Similarity=0.198 Sum_probs=200.4
Q ss_pred CCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCcccccccccc-------cccccEEECcCCCCCC-----CChh
Q 007962 231 SLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPE 293 (583)
Q Consensus 231 ~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~-------~~~L~~L~l~~~~~~~-----~~~~ 293 (583)
+|++|++++|.+. .++..+..+++|++|++++|.+.+...... ..+|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4555555555544 224445555566666666555543221111 1136666666665554 3345
Q ss_pred hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc--
Q 007962 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-- 371 (583)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-- 371 (583)
+..+++|++|++++|.+...+.. ..........++++.+++++|.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~------------------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVR------------------------------VLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HhhCCCCCEEECcCCCcchHHHH------------------------------HHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 66678888888888865322110 0011111123478888888888775
Q ss_pred ---CChhhhccCCccEEEcCCCCCCcC------CccccCCCCCcEEEccCCCCCCC----ChhhhhcCCCCcEEecCCCC
Q 007962 372 ---IPSEIWEAGEITKLDLSRNSIQEL------PPELSSCASLQTLILSRNKIKDW----PDAILTSLSSLSCLKLDNNP 438 (583)
Q Consensus 372 ---~~~~~~~~~~L~~L~l~~~~l~~l------~~~l~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~ 438 (583)
++..+..+++|++|++++|.+++. +.....+++|++|++++|.+++. ....+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 456677789999999999988762 22234689999999999998874 23456779999999999999
Q ss_pred CccCCCCcc-----CCCCcccEEeCCCCccCCCC----CCCCCCCCccceEeccccccccc-ccchhc-----cCcccEE
Q 007962 439 LRQVPSDGF-----KDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLREA-PTDILR-----LQQLRIL 503 (583)
Q Consensus 439 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~-----~~~L~~L 503 (583)
+++.....+ ...++|++|++++|.++... +..+..+++|++|++++|.++.. +..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 875432222 23479999999999987653 23345679999999999988843 222222 6799999
Q ss_pred eCCCCcCC-----ccchhhcCCCCCCEEeCCCCCCCcCCC-----CccccccccceeeccCCCCccch
Q 007962 504 DLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALPP-----ELGLLEPSLQALRLDGNPLRSIR 561 (583)
Q Consensus 504 ~l~~n~l~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~ 561 (583)
++++|.++ .+|..+..+++|++|++++|+++.... .+.....+|+.|++.++.+....
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 99999998 578888899999999999999884211 11111247999999998876443
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-29 Score=265.00 Aligned_cols=416 Identities=13% Similarity=0.078 Sum_probs=241.0
Q ss_pred hHhhCCCCCCcEEEcCCCCCc----cc------------chhhhCCCCccEEEccCCccc-cCCccccc-cCc-ccEEEc
Q 007962 61 KEDLRNLPLLTVLNVSHNKLS----EL------------PAAIGELHMLKSLDVSFNSIM-KIPDEIGS-ATA-LVKFDC 121 (583)
Q Consensus 61 ~~~~~~~~~L~~L~L~~~~l~----~l------------~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~-l~~-L~~L~l 121 (583)
+..+..+++|++|+++++... .+ +.....+++|++|+|++|.++ ..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 345677888888888775421 11 112336788888888888665 22333444 334 888888
Q ss_pred CCCcC-C--cCCcccccCCCCCEEEccccccCC-----CCcccccCCCCcEEEecCCcceeech----hhhcccccCcEE
Q 007962 122 SSNQL-K--ELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTEL 189 (583)
Q Consensus 122 ~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L 189 (583)
++|.. . .++.....+++|++|++++|.+.. ++..+..+++|++|+++++.+..+.. ..+..+++|+.|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 87762 2 222334577888888888887653 22345667888888888877763322 224567788888
Q ss_pred EcCCCcCCccchhhcCCccccEEEccCCcCc----ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcc
Q 007962 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (583)
Q Consensus 190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l 265 (583)
++++|.+..++..+..+++|+.|+++.+... ..+..+..+++|+.+.++++....++..+..+++|++|++++|.+
T Consensus 226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 8888877777777777788888888753222 233455666777777777765556666666677777777776664
Q ss_pred cccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccch
Q 007962 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345 (583)
Q Consensus 266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (583)
+... +...+..+++|++|++.++ +...
T Consensus 306 ~~~~--------------------~~~~~~~~~~L~~L~L~~~-~~~~-------------------------------- 332 (592)
T 3ogk_B 306 ETED--------------------HCTLIQKCPNLEVLETRNV-IGDR-------------------------------- 332 (592)
T ss_dssp CHHH--------------------HHHHHTTCTTCCEEEEEGG-GHHH--------------------------------
T ss_pred CHHH--------------------HHHHHHhCcCCCEEeccCc-cCHH--------------------------------
Confidence 3211 1122456677777776622 1100
Q ss_pred hhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCC----------C-CCCc--CCccccCCCCCcEEEccC
Q 007962 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR----------N-SIQE--LPPELSSCASLQTLILSR 412 (583)
Q Consensus 346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~l~~--l~~~l~~~~~L~~L~l~~ 412 (583)
.++.....+++|++|++++ | .+++ +......+++|++|+++.
T Consensus 333 -------------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 333 -------------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp -------------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred -------------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 0011112345566666662 2 3332 222234466677777766
Q ss_pred CCCCCCChhhhhc-CCCCcEEecC----CCCCccCCCC-----ccCCCCcccEEeCCCCc--cCCCCCCCC-CCCCccce
Q 007962 413 NKIKDWPDAILTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPF-SSLPHLQE 479 (583)
Q Consensus 413 ~~l~~~~~~~l~~-l~~L~~L~l~----~~~~~~~~~~-----~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~ 479 (583)
+.+++.....+.. +++|+.|+++ .+.+++.+.. .+.++++|++|+++.|. +++.....+ ..+++|++
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 6665544333333 6677777775 3344433211 14456777777775433 332221112 23677777
Q ss_pred Eecccccccc--cccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCCCCCcCCC-CccccccccceeeccC
Q 007962 480 LYLRRMQLRE--APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPP-ELGLLEPSLQALRLDG 554 (583)
Q Consensus 480 L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~ 554 (583)
|++++|.++. ++..+..+++|++|++++|.++ .++..+..+++|++|++++|+++.... .+...+|.+....+..
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 7777777663 3444556777888888888766 244555677788888888887764322 2222235555444443
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.5e-26 Score=234.26 Aligned_cols=259 Identities=30% Similarity=0.369 Sum_probs=230.9
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~ 88 (583)
..+++++|++++++++|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence 357899999999999998764 479999999999999886 67999999999999999987
Q ss_pred CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 168 (583)
.+++|++|++++|.++.+|. .+++|++|++++|+++.+|.. +++|++|++++|.+..++. .+++|+.|+++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999999998887 678999999999999998864 4899999999999998875 35789999999
Q ss_pred CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (583)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 248 (583)
+|.+..++ ..+++|+.|++++|.+..++.. .++|+.|++++|.+..+|.. +++|+.|++++|.++.+|
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence 99999887 4568999999999999988753 47899999999999988753 488999999999999887
Q ss_pred hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccc
Q 007962 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (583)
Q Consensus 249 l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (583)
..+++|+.|++++|.++.++. ...+|+.|++++|.+..+|..+.++++|+.|++++|++..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 556899999999999998877 5567999999999999999999999999999999998754
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-26 Score=219.19 Aligned_cols=241 Identities=23% Similarity=0.274 Sum_probs=188.8
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc---chh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAA 86 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l---~~~ 86 (583)
-+.++|++++++++|..++ +++++|++++|.++.++. .|+++++|++|++++|.+..+ +..
T Consensus 9 ~~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred CCEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 4678999999999998764 479999999999999886 479999999999999998855 567
Q ss_pred hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc--ccccCCCCCEEEccccccCC-CCcccccCCCCc
Q 007962 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMS 163 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-l~~~l~~l~~L~ 163 (583)
+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+..+..+++|+
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 788999999999999998888888999999999999999887763 67888888888888888774 345577788888
Q ss_pred EEEecCCccee-echhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCC
Q 007962 164 KLDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN 240 (583)
Q Consensus 164 ~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 240 (583)
+|++++|.+.. ..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 88888888765 3344477777888888888877665 4566777777777777777776543 4666777777777777
Q ss_pred CCccC-chhhhCCC-CCCEEEccCCccc
Q 007962 241 ALSAL-PAELGKLS-KLGTLDLHSNQLK 266 (583)
Q Consensus 241 ~~~~l-~~~l~~~~-~L~~L~l~~~~l~ 266 (583)
.+... +..+..++ +|++|++++|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCee
Confidence 77643 44566663 6777777777655
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=225.77 Aligned_cols=266 Identities=21% Similarity=0.292 Sum_probs=209.9
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccc-hh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~-~~ 86 (583)
+....+|+++++++++|..++ ++|++|++++|.++.++. .|.++++|++|++++|.++.++ .+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence 445678999999999998774 479999999999998875 7999999999999999998774 57
Q ss_pred hhCCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCcCCc--ccccCCCCCEEEcccc-ccCCC-CcccccCCC
Q 007962 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSK 161 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~l-~~~l~~l~~ 161 (583)
|.++++|++|++++|.++.++.. +.++++|++|++++|+++.++. .+..+++|++|++++| .+..+ +..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 99999999999999999988776 7889999999999999998876 6888999999999998 46655 456888999
Q ss_pred CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh-cCCccccEEEccCCcCcccCC----CCcCCCCCcEEE
Q 007962 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY 236 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~ 236 (583)
|++|++++|.+..+....+..+++|++|++++|.+..++..+ ..+++|+.|++++|.+..++. .......++.++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 999999999998887777889999999999999888776543 447889999999988875432 123345566666
Q ss_pred cCCCCCc-----cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCcc
Q 007962 237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL 310 (583)
Q Consensus 237 l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 310 (583)
++++.+. .+|..+..+++|++|++++|.++. ++.. +.++++|+++++++|++
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~----------------------i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS----------------------VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc----------------------cCHHHHhcCCCCCEEEeeCCCc
Confidence 6666555 345556666677766666665543 4444 46777888888888876
Q ss_pred c
Q 007962 311 R 311 (583)
Q Consensus 311 ~ 311 (583)
.
T Consensus 314 ~ 314 (353)
T 2z80_A 314 D 314 (353)
T ss_dssp C
T ss_pred c
Confidence 4
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.4e-25 Score=226.88 Aligned_cols=260 Identities=26% Similarity=0.279 Sum_probs=182.3
Q ss_pred ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (583)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 263 (583)
.+++.|+++++.++.+|..+. ++|+.|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 357788888888877776554 678888888887777765 45777778887777777665 5677777777777
Q ss_pred cccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCccccc
Q 007962 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343 (583)
Q Consensus 264 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (583)
.++.++. ...+|+.|++++|.+..++.. +++|++|++++|.+..
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~------------------------------- 155 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS------------------------------- 155 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-------------------------------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-------------------------------
Confidence 7776655 344566666666666665543 2556666666655432
Q ss_pred chhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhh
Q 007962 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL 423 (583)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l 423 (583)
++. ...+|+.|++++|.++.+| ..+++|+.|++++|.++.++.
T Consensus 156 ----------------------------l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~--- 198 (622)
T 3g06_A 156 ----------------------------LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT--- 198 (622)
T ss_dssp ----------------------------CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---
T ss_pred ----------------------------cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC---
Confidence 221 1346778888888877776 346778888888887776553
Q ss_pred hcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEE
Q 007962 424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503 (583)
Q Consensus 424 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 503 (583)
..++|+.|++++|.++.++.. +++|+.|++++|.++.+. ..+++|+.|++++|.++.+|. .+++|++|
T Consensus 199 -~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L 266 (622)
T 3g06_A 199 -LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSL 266 (622)
T ss_dssp -CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred -ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEE
Confidence 346788888888887776542 477888888888777643 455778888888888877766 56778888
Q ss_pred eCCCCcCCccchhhcCCCCCCEEeCCCCCCCcC
Q 007962 504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536 (583)
Q Consensus 504 ~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~ 536 (583)
++++|.++.+|..+.++++|+.|++++|+++..
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 888888887777777788888888888877743
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1e-26 Score=221.90 Aligned_cols=241 Identities=26% Similarity=0.339 Sum_probs=214.1
Q ss_pred cCccEEEcCCCcch---hhhHhhCCCCCCcEEEcCC-CCCc-ccchhhhCCCCccEEEccCCccc-cCCccccccCcccE
Q 007962 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (583)
Q Consensus 45 ~~L~~L~ls~~~i~---~l~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~ 118 (583)
.+++.|+++++.++ .+|..|.++++|++|++++ +.+. .+|..|..+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47999999999998 5788999999999999995 7777 67889999999999999999998 78889999999999
Q ss_pred EEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCcccccCC-CCcEEEecCCcceeechhhhcccccCcEEEcCCCc
Q 007962 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (583)
Q Consensus 119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (583)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 77889999999999999999998 7888999998 999999999999966666688887 9999999999
Q ss_pred CC-ccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCccc-cccccc
Q 007962 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272 (583)
Q Consensus 196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~ 272 (583)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 86 4667788999999999999999866666888999999999999999 78889999999999999999988 455554
Q ss_pred ccccccEEECcCCC
Q 007962 273 CQLRLSVLDLSNNS 286 (583)
Q Consensus 273 ~~~~L~~L~l~~~~ 286 (583)
...+++.+++++|.
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 44568888888875
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.6e-28 Score=255.98 Aligned_cols=409 Identities=14% Similarity=0.075 Sum_probs=265.4
Q ss_pred ccCccEEEcCCCcch----------------hhhHhhCCCCCCcEEEcCCCCCccc-chhhhC-CCC-ccEEEccCCc-c
Q 007962 44 AVDLQKLILAHNNIE----------------KLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGE-LHM-LKSLDVSFNS-I 103 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~----------------~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~-~~~-L~~L~L~~~~-l 103 (583)
+++|+.|+++++.-. .++..+.++++|++|+|++|.++.. +..+.. ++. |++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 677999999775321 1223345889999999999987632 334444 444 9999999986 3
Q ss_pred c--cCCccccccCcccEEEcCCCcCCcC-----CcccccCCCCCEEEccccccC-----CCCcccccCCCCcEEEecCCc
Q 007962 104 M--KIPDEIGSATALVKFDCSSNQLKEL-----PSSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNK 171 (583)
Q Consensus 104 ~--~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~ 171 (583)
+ .++.....+++|++|++++|.+... +.....+++|++|+++++.+. .++..+..+++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2 3334455789999999999987533 234568899999999999886 334456789999999999998
Q ss_pred ceeechhhhcccccCcEEEcCCCcC----CccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc--cC
Q 007962 172 LTVLSNNLIASWTMLTELIASKNLL----NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--AL 245 (583)
Q Consensus 172 i~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l 245 (583)
+..+. ..+..+++|++|+++.... ......+..+++|+.++++++....++..+..+++|++|++++|.+. .+
T Consensus 232 ~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 232 ILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 88866 4488899999999986422 12344667788999999998766677888889999999999999876 33
Q ss_pred chhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCC----------C-cccccc
Q 007962 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG----------N-PLRTLR 314 (583)
Q Consensus 246 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~~~~~~ 314 (583)
...+..+++|++|++.+ .+.+.. ++.....+++|++|++++ + .+...
T Consensus 311 ~~~~~~~~~L~~L~L~~-~~~~~~--------------------l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~- 368 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRN-VIGDRG--------------------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR- 368 (592)
T ss_dssp HHHHTTCTTCCEEEEEG-GGHHHH--------------------HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-
T ss_pred HHHHHhCcCCCEEeccC-ccCHHH--------------------HHHHHHhCCCCCEEEeecCccccccccccCccCHH-
Confidence 34568899999999983 322211 112234566677777762 1 11000
Q ss_pred ccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc
Q 007962 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394 (583)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 394 (583)
.+......+++|++|+++.+.+++
T Consensus 369 --------------------------------------------------------~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 369 --------------------------------------------------------GLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp --------------------------------------------------------HHHHHHHHCTTCSEEEEEESCCCH
T ss_pred --------------------------------------------------------HHHHHHhhCccCeEEEeecCCccH
Confidence 001112235566666665555544
Q ss_pred -CCcccc-CCCCCcEEEcc----CCCCCCCC-----hhhhhcCCCCcEEecCCCC--CccCCCCcc-CCCCcccEEeCCC
Q 007962 395 -LPPELS-SCASLQTLILS----RNKIKDWP-----DAILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSY 460 (583)
Q Consensus 395 -l~~~l~-~~~~L~~L~l~----~~~l~~~~-----~~~l~~l~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~ 460 (583)
.+..+. .+++|+.|+++ .+.+++.+ ...+..+++|++|+++.|. +++.....+ ..+++|++|++++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 122232 26667777775 34555431 2234567777777776543 332211112 3367777777777
Q ss_pred CccCCCCC-CCCCCCCccceEecccccccc--cccchhccCcccEEeCCCCcCCc--cchhhcCCCCCCEEeCCCC
Q 007962 461 NIASLPEN-PPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDN 531 (583)
Q Consensus 461 ~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~~ 531 (583)
|.+++... ..+..+++|++|++++|.++. ++..+..+++|+.|++++|.++. +......++.+....+..+
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 77654322 123567888888888887662 34445567888888888888763 2223346676666655554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.1e-26 Score=218.96 Aligned_cols=222 Identities=21% Similarity=0.274 Sum_probs=188.5
Q ss_pred cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCC
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~ 124 (583)
.+++.|+++++.++.+|..+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+.++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 67889999999999888888889999999999998888888888899999999999988888888889999999999986
Q ss_pred cC-CcCCcccc---------cCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCC
Q 007962 125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (583)
Q Consensus 125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 194 (583)
.. ..+|..+. .+++|++|++++|.+..+|..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence 54 46665554 48999999999999888888899999999999999998887765 888899999999997
Q ss_pred cC-CccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCcccc
Q 007962 195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 195 ~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~ 267 (583)
.+ ..+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.+++..+.+..
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 76 467778888899999999997655 67878889999999999997766 788899999999999888765543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.1e-26 Score=219.77 Aligned_cols=224 Identities=21% Similarity=0.316 Sum_probs=202.9
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~ 88 (583)
+.++++++++++++.+|..+.. +++|++|++++|.++.+|..++++++|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 7899999999999999987653 689999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEccCCcc-ccCCccccc---------cCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCccccc
Q 007962 89 ELHMLKSLDVSFNSI-MKIPDEIGS---------ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l-~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~ 158 (583)
.+++|++|++++|.+ ..+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.+..++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 999999999999755 477776654 9999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcC-CccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEE
Q 007962 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (583)
Q Consensus 159 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~ 236 (583)
+++|++|++++|.+....+..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999988876666799999999999999876 568888999999999999998765 7899999999999999
Q ss_pred cCCCCCccC
Q 007962 237 MGNNALSAL 245 (583)
Q Consensus 237 l~~~~~~~l 245 (583)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 987765543
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3e-26 Score=218.65 Aligned_cols=242 Identities=21% Similarity=0.303 Sum_probs=208.0
Q ss_pred CCCcEEEcCCCCCc---ccchhhhCCCCccEEEccC-Cccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCE
Q 007962 68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD 141 (583)
Q Consensus 68 ~~L~~L~L~~~~l~---~l~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 141 (583)
.++++|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 4788999999999999995 7776 78889999999999999999998 78888999999999
Q ss_pred EEccccccC-CCCcccccCCCCcEEEecCCcceeechhhhcccc-cCcEEEcCCCcCC-ccchhhcCCccccEEEccCCc
Q 007962 142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR 218 (583)
Q Consensus 142 L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 218 (583)
|++++|.+. .+|..+..+++|++|++++|.+....+..+..++ .|+.|++++|.+. .+|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 7888899999999999999999855455588887 9999999999996 6777888776 9999999998
Q ss_pred Cc-ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc-ccccccc-cccccEEECcCCCCCCCChhhc
Q 007962 219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEAC-QLRLSVLDLSNNSLSGLPPEIG 295 (583)
Q Consensus 219 ~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~ 295 (583)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .++.... ..+|++|++++|.+.+..+...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 88 4567788999999999999999966666888999999999999998 4444333 3459999999999986334448
Q ss_pred ccCCCcEEecCCCcc
Q 007962 296 KMTTLRKLLLTGNPL 310 (583)
Q Consensus 296 ~~~~L~~L~l~~~~~ 310 (583)
++++|+.+++.+|+.
T Consensus 289 ~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 289 NLQRFDVSAYANNKC 303 (313)
T ss_dssp TGGGSCGGGTCSSSE
T ss_pred cccccChHHhcCCCC
Confidence 899999999999873
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-25 Score=212.26 Aligned_cols=246 Identities=25% Similarity=0.307 Sum_probs=188.2
Q ss_pred EEEccCCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCC
Q 007962 257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (583)
Q Consensus 257 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 335 (583)
.+++++++++.++... +.++++|++++|.+..++.. +.++++|++|++++|.+..++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------- 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------- 68 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence 4455555555444422 23456666666666666554 577888888888888764321
Q ss_pred CCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCC
Q 007962 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415 (583)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l 415 (583)
..+..+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus 69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence 012333446788999999998888887788899999999999988
Q ss_pred CCCCh-hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEeccccccccc-cc
Q 007962 416 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PT 492 (583)
Q Consensus 416 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~-~~ 492 (583)
..... ..+..+++|++|++++|.+.......+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.+ +.
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 87765 567888999999999999888777778889999999999998876 4566788899999999999999876 56
Q ss_pred chhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCc-cccccccceeeccCCCCcc
Q 007962 493 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPEL-GLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 493 ~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~ 559 (583)
.+..+++|++|++++|.++.++. .+..+++|++|++++|+++..++.. ...+++|+.|++++|+++.
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 77789999999999999987754 5788999999999999998765544 3343589999999999864
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-28 Score=258.26 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=85.9
Q ss_pred ccCCccEEEcCCCCCCcC-Cccc-cCCCCCcEEEcc--C----CCCCCCCh-----hhhhcCCCCcEEecCCCCCccCCC
Q 007962 378 EAGEITKLDLSRNSIQEL-PPEL-SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPS 444 (583)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l-~~~l-~~~~~L~~L~l~--~----~~l~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~ 444 (583)
.+++|++|.+..+.+++. ...+ ..+++|+.|+++ + +.+++.+. ..+..+++|+.|++++ .+++...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 367777777666666541 1122 246777777777 3 34443221 1245677777777765 4444322
Q ss_pred CccCC-CCcccEEeCCCCccCCCCCCCC-CCCCccceEecccccccc--cccchhccCcccEEeCCCCcCCc-cchhh-c
Q 007962 445 DGFKD-IPMLQILDLSYNIASLPENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS-IPEGF-K 518 (583)
Q Consensus 445 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~~-l~~~l-~ 518 (583)
..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.++. +...+..+++|++|++++|.++. ....+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 22333 6777777777776654333223 446777777777776652 22233456777777777776641 11122 4
Q ss_pred CCCCCCEEeCCCC
Q 007962 519 NLTSLTELDLSDN 531 (583)
Q Consensus 519 ~~~~L~~L~l~~~ 531 (583)
.++.|+...+.++
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 5566666555554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1e-25 Score=212.52 Aligned_cols=218 Identities=24% Similarity=0.360 Sum_probs=153.5
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~ 89 (583)
++++|++++++++|..++ +++++|++++|.++.++ ..|.++++|++|++++|.+..+ +.+|..
T Consensus 14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCCC---------------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 578999999999988663 47899999999999886 4688899999999999988877 568888
Q ss_pred CCCccEEEccCCc-cccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCCc-ccccCCCCcEE
Q 007962 90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L 165 (583)
+++|++|++++|. ++.+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 8999999999886 7766 56678888888888888888766 4567777788888888877776654 36667777777
Q ss_pred EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC
Q 007962 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 245 (583)
++++|.+..+....+..+++|+.|++++|.+..+ .|..+..+++|+.|++++|.+..+
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV----------------------HPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCccccc----------------------CHhHccCcccccEeeCCCCcCCcC
Confidence 7777777766655555555566666555555433 133444444555555555554444
Q ss_pred ch-hhhCCCCCCEEEccCCccc
Q 007962 246 PA-ELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 246 ~~-~l~~~~~L~~L~l~~~~l~ 266 (583)
+. .+..+++|++|++++|.+.
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHcccCcccCEEeccCCCcc
Confidence 32 3555555555555555544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8e-25 Score=219.78 Aligned_cols=239 Identities=24% Similarity=0.356 Sum_probs=195.3
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~ 88 (583)
...++|++++++++|..+. ++++.|+|++|.++.++ ..|.++++|++|+|++|.+..++ .+|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred CCEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence 4578899999999998774 46899999999999876 57899999999999999988775 4888
Q ss_pred CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc-ccCCCCc-ccccCCCCcE
Q 007962 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~l~~L~~ 164 (583)
++++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 99999999999999887765 58889999999999999887764 6788899999999884 4444543 5788888999
Q ss_pred EEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCC
Q 007962 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (583)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 242 (583)
|++++|.+..++. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 9998888887764 77888888888888888765 56778888888888888888865 45678888888888888888
Q ss_pred ccCch-hhhCCCCCCEEEccCCccc
Q 007962 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~~~l~ 266 (583)
+.++. .+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 86654 4677888888888888764
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.9e-24 Score=214.79 Aligned_cols=240 Identities=25% Similarity=0.354 Sum_probs=191.2
Q ss_pred cccEEECcCCCCCCCC-hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhc
Q 007962 276 RLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354 (583)
Q Consensus 276 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (583)
+++.|++++|.+..++ ..+.++++|++|++++|.+..+..
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------------------------------------- 105 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--------------------------------------- 105 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG---------------------------------------
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh---------------------------------------
Confidence 3444555555555433 357778888888888887654432
Q ss_pred cccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEe
Q 007962 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (583)
Q Consensus 355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (583)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+....|..+++|+.|+
T Consensus 106 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 106 -------------------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp -------------------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred -------------------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 233446789999999999988775 588899999999999999988888889999999999
Q ss_pred cCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962 434 LDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 434 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~ 511 (583)
+++ +.+..++...|.++++|++|++++|.++... .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 998 5566677778999999999999999998664 488899999999999999976 567788999999999999999
Q ss_pred cc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhccchHHHHHHHhhcCC
Q 007962 512 SI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 581 (583)
Q Consensus 512 ~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
.+ +..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++. ++........|+++..|
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------CdC~l~~l~~~~~~~~~ 309 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN------CNCDILWLSWWIKDMAP 309 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE------CSSTTHHHHHHHHTTSC
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc------CCCCchHHHHHHHhccc
Confidence 76 455889999999999999999999988777799999999999985 33334444556655443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.1e-24 Score=219.74 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=200.7
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~ 88 (583)
...++|++++++++|..+. +++++|+|++|.++.++ ..|.++++|++|+|++|.+..++ .+|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 4678999999999998774 47999999999999874 57999999999999999999775 5889
Q ss_pred CCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc-ccCCCCc-ccccCCCCcE
Q 007962 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK 164 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~l~~L~~ 164 (583)
++++|++|+|++|.++.++.. +..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 999999999999999877654 7889999999999999987764 6888999999999984 4555543 5788899999
Q ss_pred EEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCC
Q 007962 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL 242 (583)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 242 (583)
|++++|.+..++. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 201 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 201 LNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp EECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 9999999888754 78888999999999988765 56788889999999999988865 56688889999999999988
Q ss_pred ccCch-hhhCCCCCCEEEccCCccc
Q 007962 243 SALPA-ELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 243 ~~l~~-~l~~~~~L~~L~l~~~~l~ 266 (583)
..++. .+..+++|+.|++++|.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 87765 4677888999999888765
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=217.28 Aligned_cols=272 Identities=20% Similarity=0.212 Sum_probs=198.9
Q ss_pred CCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccc--cccccEEECcCCCCCCCC-hhhcccCCCcEEec
Q 007962 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLL 305 (583)
Q Consensus 229 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 305 (583)
|+.....+.+++.++.+|..+. ++|++|++++|.++.++...+ ..+|++|++++|.+.+++ ..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4445556777777777766543 477777777777665544221 223555555555555543 23555555555555
Q ss_pred CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChh-hhccCCccE
Q 007962 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITK 384 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~ 384 (583)
++|. +..++.. +..+++|++
T Consensus 108 s~n~-----------------------------------------------------------l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 108 SYNY-----------------------------------------------------------LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CSSC-----------------------------------------------------------CSSCCHHHHTTCTTCSE
T ss_pred CCCc-----------------------------------------------------------CCcCCHhHhCCCccCCE
Confidence 5554 4444444 455788999
Q ss_pred EEcCCCCCCcCCc--cccCCCCCcEEEccCC-CCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 385 LDLSRNSIQELPP--ELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 385 L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
|++++|.++.++. .+..+++|++|++++| .+.......+..+++|++|++++|.+.++....+..+++|++|++++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999998888876 6788999999999998 577776677888999999999999998887777888999999999998
Q ss_pred ccCCCCCCCCCCCCccceEecccccccccccc----hhccCcccEEeCCCCcCC-----ccchhhcCCCCCCEEeCCCCC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNN 532 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~~~ 532 (583)
.+.......+..+++|++|++++|.++.++.. ....+.++.++++++.+. .+|+.+..+++|++|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 87655443445678999999999988865322 223567788888888766 467888999999999999999
Q ss_pred CCcCCCCccccccccceeeccCCCCccch
Q 007962 533 ISALPPELGLLEPSLQALRLDGNPLRSIR 561 (583)
Q Consensus 533 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 561 (583)
|+.+|..++..+++|+.|++++|++....
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 99999988666699999999999987543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.7e-24 Score=214.39 Aligned_cols=223 Identities=25% Similarity=0.335 Sum_probs=186.4
Q ss_pred cccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhc
Q 007962 276 RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354 (583)
Q Consensus 276 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (583)
++++|++++|.+..+ +..+.++++|++|++++|.+..+..
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------------------------------------- 116 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--------------------------------------- 116 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------------------------
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh---------------------------------------
Confidence 345555555555553 3457788889999988887654432
Q ss_pred cccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEe
Q 007962 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (583)
Q Consensus 355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (583)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..++...|..+++|+.|+
T Consensus 117 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 117 -------------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp -------------------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred -------------------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 233446789999999999988775 488899999999999999988888889999999999
Q ss_pred cCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962 434 LDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 434 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~ 511 (583)
+++ +.+..++...|.++++|++|++++|.++... .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 998 5666788778999999999999999998763 588899999999999999976 667889999999999999999
Q ss_pred cc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962 512 SI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (583)
Q Consensus 512 ~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (583)
.+ +..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++.
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66 566899999999999999999999988777799999999999985
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.5e-24 Score=204.65 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=153.5
Q ss_pred ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (583)
Q Consensus 47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~ 124 (583)
-++++++++.++.+|..+ .++|++|+++++.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 467888888888877544 4678888888888887754 677788888888888877754 556677777777777777
Q ss_pred c-CCcC-CcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962 125 Q-LKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201 (583)
Q Consensus 125 ~-~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 201 (583)
. +..+ +..+..+++|++|++++|.+..+ ....+..+++|++|++++|.+..++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-----------------------GPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE-----------------------CHhHhhCCcCCCEEECCCCcccccCHh
Confidence 5 5555 34555556666666665555543 33334444444444455554444432
Q ss_pred hhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCcccccccccc--cccc
Q 007962 202 TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRL 277 (583)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~--~~~L 277 (583)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++...+ ..+|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 35566777777777777776654 478889999999999999855 7789999999999999999998776433 3469
Q ss_pred cEEECcCCCCCC
Q 007962 278 SVLDLSNNSLSG 289 (583)
Q Consensus 278 ~~L~l~~~~~~~ 289 (583)
+++++++|.+..
T Consensus 228 ~~L~l~~N~~~c 239 (285)
T 1ozn_A 228 QYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEeccCCCccC
Confidence 999999998765
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.3e-27 Score=248.98 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred cCCccEEEcC--C----CCCCcCC------ccccCCCCCcEEEccCCCCCCCChhhhhc-CCCCcEEecCCCCCccCCCC
Q 007962 379 AGEITKLDLS--R----NSIQELP------PELSSCASLQTLILSRNKIKDWPDAILTS-LSSLSCLKLDNNPLRQVPSD 445 (583)
Q Consensus 379 ~~~L~~L~l~--~----~~l~~l~------~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~ 445 (583)
+++|++|+++ + +.+++.| ..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++....
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 5666777666 2 2444322 1244566677777755 444433333333 66677777776666543322
Q ss_pred cc-CCCCcccEEeCCCCccCCCCCC-CCCCCCccceEecccccccc-cccch-hccCcccEEeCCCC
Q 007962 446 GF-KDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRMQLRE-APTDI-LRLQQLRILDLSQN 508 (583)
Q Consensus 446 ~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~-~~~~~-~~~~~L~~L~l~~n 508 (583)
.+ .++++|++|++++|.+++.... ....+++|++|++++|.++. ....+ ..++.|+...+..+
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 22 4466777777777666433222 22346677777777776541 11112 34556655555544
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=7.3e-25 Score=209.74 Aligned_cols=215 Identities=23% Similarity=0.292 Sum_probs=106.7
Q ss_pred ccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
+++|++|++++|.++.++ ..|.++++|++|++++|.+..+++ +..+++|++|++++|.++.++ ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 345555555555555443 345555555555555555554433 555555555555555554333 22555555555
Q ss_pred CCcCCcCCcccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhh-cccccCcEEEcCCCcCCccc
Q 007962 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMP 200 (583)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 200 (583)
+|.+..++.. .+++|++|++++|.+..++ ..+..+++|++|++++|.+..+....+ ..+++|++|++++|.++.++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 5555544321 2345555555555555442 234445555555555555554443333 23455555555555554443
Q ss_pred hhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc
Q 007962 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~ 266 (583)
.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.
T Consensus 186 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 21 224455555555555554444444555555555555555544444444455555555544443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.6e-25 Score=212.31 Aligned_cols=246 Identities=16% Similarity=0.154 Sum_probs=133.9
Q ss_pred CCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc--ccchhhh-------CCCCccEEEccCCccc-cCCc
Q 007962 39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPD 108 (583)
Q Consensus 39 ~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~~~~L~~L~L~~~~l~-~l~~ 108 (583)
+.+...++|+++++++|.+ .+|..+... |+.|+++++.+. .++..+. .+++|++|++++|.++ .+|.
T Consensus 37 ~~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 3344455566666666655 455433322 555666665554 2333333 4566666666666655 4454
Q ss_pred cc--cccCcccEEEcCCCcCCcCCcccccC-----CCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceee----c
Q 007962 109 EI--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----S 176 (583)
Q Consensus 109 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~----~ 176 (583)
.+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++++|.+... .
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 44 55666666666666665555555444 56666666666665544 4556666666666666654321 1
Q ss_pred hhhhcccccCcEEEcCCCcCCccc---h-hhcCCccccEEEccCCcCcccC--CCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962 177 NNLIASWTMLTELIASKNLLNGMP---E-TIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELG 250 (583)
Q Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~---~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~l~ 250 (583)
...+..+++|++|++++|.+..++ . .+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.++.+|..+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 111255566666666666665322 1 2234556666666666665433 234445666666666666665555544
Q ss_pred CCCCCCEEEccCCcccccccccccccccEEECcCCCCCC
Q 007962 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289 (583)
Q Consensus 251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 289 (583)
++|++|++++|+++.++......+|+++++++|.+.+
T Consensus 274 --~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 5666666666666655443333446666666665543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.1e-23 Score=195.78 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=174.3
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~ 89 (583)
..++|++.++.++|..++ +++++|++++|.++.++. .|.++++|++|++++|.+..++. +|..
T Consensus 10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 468999999999999774 479999999999998875 79999999999999999998765 7999
Q ss_pred CCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcEE
Q 007962 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L 165 (583)
+++|++|++++|.++.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+.. ++..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999998665 568899999999999999987765 68899999999999999886 67889999999999
Q ss_pred EecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCC-CcCCCCCcEEEcCCC
Q 007962 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 240 (583)
++++|.+..+....+..+++|+ .+++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9999999988777677777766 67777777766555444444666666666666655432 344555555555555
Q ss_pred CCc
Q 007962 241 ALS 243 (583)
Q Consensus 241 ~~~ 243 (583)
.+.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 444
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=208.14 Aligned_cols=255 Identities=18% Similarity=0.178 Sum_probs=211.0
Q ss_pred cCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 45 VDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
..++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..|..+++|++|++++|.++..+. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 35777888998888765 45788899999999999999886 589999999999999999986654 8999999999999
Q ss_pred CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-h
Q 007962 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-E 201 (583)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~ 201 (583)
+|.++.++ ..++|++|++++|.+..++. ..+++|++|++++|.+..+....+..+++|++|++++|.+..++ .
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 99988765 44899999999999987643 34789999999999999988877999999999999999997653 3
Q ss_pred hh-cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccccccccc-ccccE
Q 007962 202 TI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSV 279 (583)
Q Consensus 202 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~ 279 (583)
.+ ..+++|+.|++++|.+..++. ...+++|++|++++|.+..++..+..+++|++|++++|.++.++..... .+|+.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred HHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 44 468999999999999987754 3458999999999999998888899999999999999988876654322 34778
Q ss_pred EECcCCCCC--CCChhhcccCCCcEEecCC
Q 007962 280 LDLSNNSLS--GLPPEIGKMTTLRKLLLTG 307 (583)
Q Consensus 280 L~l~~~~~~--~~~~~~~~~~~L~~L~l~~ 307 (583)
+++++|.+. .++..+..+++++.+++.+
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888877776 2555566677777776653
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.4e-23 Score=190.66 Aligned_cols=200 Identities=30% Similarity=0.428 Sum_probs=182.3
Q ss_pred ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (583)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (583)
..+.++++++.+..+|..+. +.+++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999998887653 689999999999999775 789999999999999999999888889999999999999
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (583)
|.+..++...|.++++|++|++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 999999988899999999999999999999888899999999999999999988765 6789999999999999998865
Q ss_pred -hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 516 -~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
.+..+++|++|++++|+|+.+++..+..+++|+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 48899999999999999999998877767999999999999854
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.2e-24 Score=207.61 Aligned_cols=241 Identities=20% Similarity=0.206 Sum_probs=127.9
Q ss_pred CCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccc--cCCcccc-------ccCcccEEEcCCCcCC-cCCccc--
Q 007962 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL-- 133 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~-- 133 (583)
..++|+++++++|.+ .+|..+... |++|++++|.+. .++..+. ++++|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344555555555555 555544333 555556555553 2333333 4556666666666555 344433
Q ss_pred ccCCCCCEEEccccccCCCCcccccC-----CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCc---cchhh--
Q 007962 134 GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI-- 203 (583)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~l~~~l~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~l-- 203 (583)
..+++|++|++++|.+..++..+..+ ++|++|++++|.+..+....++.+++|++|++++|.+.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 55566666666666555555444444 556666666666655555555556666666666665432 12222
Q ss_pred cCCccccEEEccCCcCcccC----CCCcCCCCCcEEEcCCCCCccCc--hhhhCCCCCCEEEccCCcccccccccccccc
Q 007962 204 GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L 277 (583)
..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++.++.... .+|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L 276 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL 276 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence 45556666666666555221 11234556666666666555432 233445566666666665555544443 456
Q ss_pred cEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311 (583)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (583)
++|++++|.+.++|. +..+++|+++++++|+++
T Consensus 277 ~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 277 SVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred eEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 666666666555543 555566666666665543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.4e-23 Score=209.51 Aligned_cols=235 Identities=21% Similarity=0.252 Sum_probs=184.5
Q ss_pred eccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCCCc
Q 007962 15 NLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHML 93 (583)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L 93 (583)
+++......+|..+.... ..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+++ +..+++|
T Consensus 13 ~~~~~~~~~l~~~l~~l~---------~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 82 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLR---------QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL 82 (487)
T ss_dssp EEESCCTTTHHHHHHTTS---------TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTC
T ss_pred ecccCchhhhHHHHHHhc---------ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCC
Confidence 344444445666554421 12458999999999998775 578899999999999998886654 8888999
Q ss_pred cEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcc
Q 007962 94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL 172 (583)
Q Consensus 94 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i 172 (583)
++|++++|.++.++. .++|++|++++|.+..++.. .+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 83 ~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 83 RTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred CEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 999999998876653 38899999999988877543 467889999999988865 45678888999999999988
Q ss_pred eeechhhhc-ccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhC
Q 007962 173 TVLSNNLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251 (583)
Q Consensus 173 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~ 251 (583)
..+.+..+. .+++|+.|++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence 876665565 67888999999888877754 3357888888888888888877788888888888888888888888888
Q ss_pred CCCCCEEEccCCccc
Q 007962 252 LSKLGTLDLHSNQLK 266 (583)
Q Consensus 252 ~~~L~~L~l~~~~l~ 266 (583)
+++|+.+++++|.+.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 888888888888776
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2e-23 Score=211.24 Aligned_cols=233 Identities=19% Similarity=0.204 Sum_probs=204.0
Q ss_pred HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (583)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~ 87 (583)
.+.++++++++++++.+++..+.. +++|++|+|++|.++.+++ |..+++|++|+|++|.++.++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT------------CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC------------CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence 358999999999999998755443 7899999999999997655 9999999999999999987753
Q ss_pred hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCC-CCcccc-cCCCCcE
Q 007962 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITS-LPEDLA-DCSKMSK 164 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~l~-~l~~L~~ 164 (583)
.++|++|++++|.++.++.. .+++|+.|++++|.++.+ +..+..+++|++|++++|.+.. .+..+. .+++|++
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred --CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 38999999999999876543 568999999999999976 4578899999999999999985 445554 7999999
Q ss_pred EEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-
Q 007962 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS- 243 (583)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 243 (583)
|++++|.+..++. ...+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.+++++|.+.
T Consensus 174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred EecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence 9999999998855 4568999999999999999988899999999999999999999999999999999999999998
Q ss_pred -cCchhhhCCCCCCEEEcc
Q 007962 244 -ALPAELGKLSKLGTLDLH 261 (583)
Q Consensus 244 -~l~~~l~~~~~L~~L~l~ 261 (583)
.+|..+..++.|+.+++.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 667778888888877765
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-22 Score=189.05 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=109.5
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI 87 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~ 87 (583)
+.+++++|++++++++|..++ ++++.|++++|.++.++ ..|.++++|++|++++|.++.++..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred CCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 445666666666666666553 34666666666666553 3566666666666666666655433
Q ss_pred hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCCcc-cccCCCCcEE
Q 007962 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L 165 (583)
..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+..++.. +..+++|++|
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 5566666666666666666555555666666666666655554 3455555555555555555544322 3445555555
Q ss_pred EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc
Q 007962 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (583)
++++|.+..++...+.. +++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus 154 ~L~~N~l~~l~~~~~~~-----------------------l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNG-----------------------LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCSCCCTTTTTT-----------------------CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCccCHHHhcC-----------------------cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 55555555444444444 45555555555555555555555555555555555444
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4e-22 Score=187.00 Aligned_cols=185 Identities=29% Similarity=0.330 Sum_probs=154.4
Q ss_pred hhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcc
Q 007962 375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453 (583)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 453 (583)
.+..+++|++|++++|.++.++. .+..+++|++|++++|.+.......|..+++|++|++++|.+..+....+..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 34456788888888888887654 67888999999999999888877778889999999999999988887778899999
Q ss_pred cEEeCCCCccCCCC-CCCCCCCCccceEecccccccccc-cchhccCccc----EEeCCCCcCCccchhhcCCCCCCEEe
Q 007962 454 QILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR----ILDLSQNSLQSIPEGFKNLTSLTELD 527 (583)
Q Consensus 454 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~L~----~L~l~~n~l~~l~~~l~~~~~L~~L~ 527 (583)
++|++++|.+.... +..+..+++|++|++++|.++.++ ..+..+++|+ +|++++|.++.++.......+|++|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 99999999988754 667888999999999999998764 3555666666 89999999998876665667899999
Q ss_pred CCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 528 LSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 528 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
+++|+++.+++..+..+++|+.|++++|+++.
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99999999988877666899999999999873
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=7.3e-22 Score=184.28 Aligned_cols=195 Identities=25% Similarity=0.386 Sum_probs=113.9
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~ 88 (583)
.++++|++++++.+|..++ ++++.|++++|.++.++. .|.++++|++|++++|.++.++. .|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP---------------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCEEEccCCCCCccCCCCC---------------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 4567777777777776553 356777777777776653 56677777777777777666654 346
Q ss_pred CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCCCCcc-cccCCCCcEE
Q 007962 89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L 165 (583)
.+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 66677777777666665543 34556666666666666655542 345555555655555555544432 4455555555
Q ss_pred EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCc
Q 007962 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 243 (583)
++++|.+..+....+.. +++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 163 ~L~~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDK-----------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSCCCTTTTTT-----------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EecCCcCcEeChhHhcc-----------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 55555555544444444 4555555555555554433 2455556666666665544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.8e-22 Score=185.47 Aligned_cols=198 Identities=25% Similarity=0.296 Sum_probs=127.7
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc-hhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~ 122 (583)
+++++.++++++.++.+|..+. +++++|++++|.+..++ ..|..+++|++|++++|.++.++.. ..+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4556666666666666554432 45666666666655442 3555556666666666555544332 444455555555
Q ss_pred CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201 (583)
Q Consensus 123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 201 (583)
+|.+..+ +..+..+++|++|++++|.+..+....|..+++|++|++++|.+..++.
T Consensus 86 ~N~l~~l-----------------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 86 HNQLQSL-----------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp SSCCSSC-----------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCcCCcC-----------------------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 5554444 4444445555555555555555554445555666666666666655543
Q ss_pred hhcCCccccEEEccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccc
Q 007962 202 TIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 202 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~ 267 (583)
.+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|.+.-
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 345677888888888888877654 578999999999999999999999999999999999998763
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4e-22 Score=189.46 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=110.0
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
+++|++|+++++.++.++ .+.++++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 456666666666666664 46666666666666666666655 666666666666666665553 455666666666666
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+.. +..+
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-------------------- 172 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL-------------------- 172 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC--------------------
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCC--------------------
Confidence 66655542 5555566666666655555433 4555555555555555554433 4444
Q ss_pred cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccc
Q 007962 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~ 268 (583)
++|+.|++++|.+..++. +..+++|+.|++++|.+..++ .+..+++|+.|++++|.++..
T Consensus 173 ---~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 173 ---SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ---TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred ---CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecC
Confidence 445555555544444432 444555555555555555444 255556666666666655543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.1e-21 Score=184.57 Aligned_cols=197 Identities=25% Similarity=0.333 Sum_probs=174.1
Q ss_pred HHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch
Q 007962 6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (583)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~ 85 (583)
...+.++++++++++++++|. +. .+++|++|++++|.++.++. +.++++|++|++++|.+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~-~~-------------~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG-VQ-------------YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GG-------------GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred HHcCCcCEEEeeCCCccCchh-hh-------------ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 456789999999999999874 32 27899999999999999987 999999999999999999885
Q ss_pred hhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEE
Q 007962 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165 (583)
Q Consensus 86 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L 165 (583)
.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 68999999999999999998764 8999999999999999998865 8899999999999999998876 8999999999
Q ss_pred EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC
Q 007962 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224 (583)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 224 (583)
++++|.+..+.. +..+++|++|++++|.+..++ .+..+++|+.|++++|.+...|.
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 999999998775 788889999999999888776 37778888888888888776544
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.4e-22 Score=182.32 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=108.6
Q ss_pred CccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCC-Ccccch-hhhCCCCccEEEccC-CccccCC-ccccccCcccEEE
Q 007962 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFD 120 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~-l~~l~~-~~~~~~~L~~L~L~~-~~l~~l~-~~~~~l~~L~~L~ 120 (583)
++++|++++|.++.++. .|.++++|++|++++|. ++.++. +|..+++|++|++++ |.++.++ ..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56777777777776654 56667777777777665 666654 566666666666666 5665544 2355555566666
Q ss_pred cCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-cceeechhhhcccccCc-EEEcCCCcCCc
Q 007962 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNG 198 (583)
Q Consensus 121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~ 198 (583)
+++|.++.+|. +..+++|+ .|++|++++| .+..++...|..+++|+ .|++++|.++.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred CCCCCCccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 55555555543 44444444 0014555544 44444444455555555 55555555544
Q ss_pred cchhhcCCccccEEEccCCc-CcccC-CCCcCC-CCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962 199 MPETIGSLSRLIRLDLHQNR-ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (583)
Q Consensus 199 ~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 263 (583)
++......++|+.|++++|. +..++ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|++.++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 44332222555566665553 55443 334555 6666666666666655443 4556666666554
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.4e-21 Score=179.00 Aligned_cols=200 Identities=17% Similarity=0.240 Sum_probs=142.5
Q ss_pred chhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCc-cccCCc-cccccCcccEEEcCC-CcCCcCC-c
Q 007962 57 IEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-S 131 (583)
Q Consensus 57 i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~-~ 131 (583)
++.+|. +. ++|++|++++|.++.++. +|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 556665 32 367777777777776655 66677777777777775 665543 455566666666665 5555444 2
Q ss_pred ccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCc---EEEcCCC-cCCccch-hhcCC
Q 007962 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT---ELIASKN-LLNGMPE-TIGSL 206 (583)
Q Consensus 132 ~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~ 206 (583)
.+..+++|++|++++| .+..++. +..+++|+ .|++++| .+..++. .+..+
T Consensus 100 ~f~~l~~L~~L~l~~n-----------------------~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-----------------------GLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp SEECCTTCCEEEEEEE-----------------------CCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred HhCCCCCCCEEeCCCC-----------------------CCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence 3444555555555544 4444433 55556666 9999999 8888765 48889
Q ss_pred cccc-EEEccCCcCcccCCCCcCCCCCcEEEcCCCC-CccCc-hhhhCC-CCCCEEEccCCcccccccccccccccEEEC
Q 007962 207 SRLI-RLDLHQNRILSIPSSISGCCSLAEFYMGNNA-LSALP-AELGKL-SKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (583)
Q Consensus 207 ~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~-~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 282 (583)
++|+ .|++++|.+..+|......++|+.|++++|. +..++ ..+..+ ++|++|++++|.++.++.. ...+++.|++
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 9999 9999999999887765555899999999995 98775 468888 9999999999999988776 4557999998
Q ss_pred cCC
Q 007962 283 SNN 285 (583)
Q Consensus 283 ~~~ 285 (583)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 775
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.1e-20 Score=174.23 Aligned_cols=177 Identities=31% Similarity=0.431 Sum_probs=115.3
Q ss_pred CccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (583)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 460 (583)
..++++++++.++.+|..+. ++++.|++++|.+.......|..+++|++|++++|.+..+....|.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 35566666666666665443 4666666666666666665666666677777766666666666666666777777776
Q ss_pred CccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCC
Q 007962 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP 538 (583)
Q Consensus 461 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~ 538 (583)
|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 666666666666667777777777766666554 3456677777777777666654 36666777777777777776666
Q ss_pred CccccccccceeeccCCCCcc
Q 007962 539 ELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 539 ~~~~~~~~L~~L~l~~~~~~~ 559 (583)
..+..+++|+.|++++|++..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 554444667777777776653
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.1e-20 Score=173.31 Aligned_cols=179 Identities=31% Similarity=0.412 Sum_probs=125.7
Q ss_pred hccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEE
Q 007962 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (583)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 456 (583)
..+++|+.++++++.+..++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++++...|.++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34567777777777766654 3566777777777777776653 45677777777777777777766667777777777
Q ss_pred eCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCCC
Q 007962 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534 (583)
Q Consensus 457 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~ 534 (583)
++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 7777777766666677777777777777777766544 35677777777777777766543 567777777777777777
Q ss_pred cCCCCccccccccceeeccCCCCc
Q 007962 535 ALPPELGLLEPSLQALRLDGNPLR 558 (583)
Q Consensus 535 ~~~~~~~~~~~~L~~L~l~~~~~~ 558 (583)
.+++..+..+++|+.|++++|++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc
Confidence 776665555577777777777765
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7e-21 Score=177.74 Aligned_cols=194 Identities=27% Similarity=0.367 Sum_probs=171.4
Q ss_pred cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (583)
.+++.+.+.++.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++......|..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57889999999888765 4677999999999999998864 688999999999999999999888889999999999999
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 515 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~ 515 (583)
|.++.++...|.++++|++|++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999999888899999999999999999988888889999999999999999987665 4789999999999999997764
Q ss_pred -hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 516 -~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
.+..+++|++|++++|++.. .++.|+.+++++|.++.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 47899999999999997763 23568888888777653
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=8.3e-22 Score=194.40 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=148.2
Q ss_pred cccCccEEEcCCCcchh-----hhHhhCCCCCCcEEEcCCCCCcc----cchh-------hhCCCCccEEEccCCcccc-
Q 007962 43 EAVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK- 105 (583)
Q Consensus 43 ~~~~L~~L~ls~~~i~~-----l~~~~~~~~~L~~L~L~~~~l~~----l~~~-------~~~~~~L~~L~L~~~~l~~- 105 (583)
.+++|++|++++|.++. ++..+.++++|++|+|++|.+.. +|.. +..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 36778888888888874 33457788888888888875542 2332 3678888888888887764
Q ss_pred ----CCccccccCcccEEEcCCCcCCc-----CCcccccC---------CCCCEEEccccccC--CCC---cccccCCCC
Q 007962 106 ----IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKM 162 (583)
Q Consensus 106 ----l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~l~---~~l~~l~~L 162 (583)
++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.+. .++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 56667778888888888887752 22334444 77888888887775 232 356667777
Q ss_pred cEEEecCCccee-----echhhhcccccCcEEEcCCCcC-----CccchhhcCCccccEEEccCCcCcc-----cCCCCc
Q 007962 163 SKLDVEGNKLTV-----LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS 227 (583)
Q Consensus 163 ~~L~l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~ 227 (583)
++|++++|.+.. +....+..+++|+.|++++|.+ ..++..+..+++|+.|++++|.+.. ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 777777777662 2221356667777777777776 3455566666777777777776652 234442
Q ss_pred --CCCCCcEEEcCCCCCcc-----Cchhh-hCCCCCCEEEccCCcccc
Q 007962 228 --GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKE 267 (583)
Q Consensus 228 --~~~~L~~L~l~~~~~~~-----l~~~l-~~~~~L~~L~l~~~~l~~ 267 (583)
.+++|+.|++++|.+.. ++..+ .++++|++|++++|.++.
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 36667777777766664 55555 446666666666666554
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.7e-21 Score=192.16 Aligned_cols=223 Identities=19% Similarity=0.173 Sum_probs=154.7
Q ss_pred cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc----cCCccc-----
Q 007962 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIPDEI----- 110 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~----~l~~~~----- 110 (583)
+.|+...+....+..++..+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+. .+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 35555566666677787888999999999999998884 3345778999999999997554 233333
Q ss_pred --cccCcccEEEcCCCcCCc-----CCcccccCCCCCEEEccccccC-----CCCcccccC---------CCCcEEEecC
Q 007962 111 --GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT-----SLPEDLADC---------SKMSKLDVEG 169 (583)
Q Consensus 111 --~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l---------~~L~~L~l~~ 169 (583)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+. .++..+..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 677888888888888775 5567778888888888888775 233334444 7888888888
Q ss_pred Ccceeech----hhhcccccCcEEEcCCCcCCc------cchhhcCCccccEEEccCCcC-----cccCCCCcCCCCCcE
Q 007962 170 NKLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAE 234 (583)
Q Consensus 170 ~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~ 234 (583)
|.+..... ..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+ ..++..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 87752221 235567777788887777751 222566677777777777776 345556667777777
Q ss_pred EEcCCCCCcc-----CchhhhC--CCCCCEEEccCCcccc
Q 007962 235 FYMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE 267 (583)
Q Consensus 235 L~l~~~~~~~-----l~~~l~~--~~~L~~L~l~~~~l~~ 267 (583)
|++++|.+.. ++..+.. +++|++|++++|.++.
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 7777777663 2444433 6777777777776665
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.5e-19 Score=166.54 Aligned_cols=178 Identities=30% Similarity=0.418 Sum_probs=161.9
Q ss_pred cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (583)
...+.++++++.+..+|..+. +.++.|++++|.+..++. .+..+++|++|++++|.+.......|..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999988764 689999999999998654 68999999999999999999988888999999999999
Q ss_pred CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCccc
Q 007962 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP 514 (583)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~ 514 (583)
+|.++.++...|..+++|++|++++|.++......+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999999998889999999999999999998888889999999999999999998877 5778999999999999999876
Q ss_pred h-hhcCCCCCCEEeCCCCCCCcC
Q 007962 515 E-GFKNLTSLTELDLSDNNISAL 536 (583)
Q Consensus 515 ~-~l~~~~~L~~L~l~~~~l~~~ 536 (583)
. .+..+++|++|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 5 588999999999999998754
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.9e-21 Score=185.38 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=171.0
Q ss_pred CccEEEcCCCcchhhhHhhCCC--CCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc--CCccccccCcccEEEc
Q 007962 46 DLQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDC 121 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~~~~~~~--~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l 121 (583)
.++.++++++.+. +..+..+ ++++.++++++.+...+..+..+++|++|++++|.++. ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3677888887776 3455555 78888888888877666656678888888888887762 6667778888888888
Q ss_pred CCCcCC-cCCcccccCCCCCEEEcccc-ccC--CCCcccccCCCCcEEEecCC-cceee-chhhhcccc-cCcEEEcCCC
Q 007962 122 SSNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKN 194 (583)
Q Consensus 122 ~~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~l~~~l~~l~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~ 194 (583)
++|.++ ..+..+..+++|++|++++| .+. .++..+..+++|++|++++| .+... ....+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 888776 44566777888888888888 565 35566777888888888888 77653 233467777 8888888888
Q ss_pred c--C--CccchhhcCCccccEEEccCCc-Cc-ccCCCCcCCCCCcEEEcCCCC-Cc-cCchhhhCCCCCCEEEccCCccc
Q 007962 195 L--L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLK 266 (583)
Q Consensus 195 ~--~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~-~l~~~l~~~~~L~~L~l~~~~l~ 266 (583)
. + ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 4 3 3456666778888888888887 44 445567778888888888885 22 11235677888888888888 44
Q ss_pred ccccccccccccEEECcCCCCCCC
Q 007962 267 EYCVEACQLRLSVLDLSNNSLSGL 290 (583)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~ 290 (583)
..........+..|+++.|.+++.
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHHHHHhhCcceEEecccCccc
Confidence 322222223466666777766663
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=4.3e-21 Score=187.19 Aligned_cols=244 Identities=19% Similarity=0.216 Sum_probs=164.9
Q ss_pred eeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-----HhhCCCC-CCcEEEcCCCCCccc-ch
Q 007962 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA 85 (583)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-----~~~~~~~-~L~~L~L~~~~l~~l-~~ 85 (583)
++++++++++...+.+... .++|++|++++|.++..+ ..|.+++ +|++|+|++|.++.. +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 4677777777655544432 456899999998888654 5678888 899999998888854 33
Q ss_pred hhhCC-----CCccEEEccCCccccCCc-c----cccc-CcccEEEcCCCcCCcCCc-c----ccc-CCCCCEEEccccc
Q 007962 86 AIGEL-----HMLKSLDVSFNSIMKIPD-E----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNC 148 (583)
Q Consensus 86 ~~~~~-----~~L~~L~L~~~~l~~l~~-~----~~~l-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~ 148 (583)
.+..+ ++|++|++++|.++..+. . +..+ ++|++|++++|.++..+. . +.. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44443 889999999888874432 2 4444 788888888888875542 2 333 3588888888888
Q ss_pred cC-----CCCcccccCC-CCcEEEecCCcceeechhhhc----cc-ccCcEEEcCCCcCCc-----cchhhcC-CccccE
Q 007962 149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR 211 (583)
Q Consensus 149 ~~-----~l~~~l~~l~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~ 211 (583)
+. .++..+..++ +|++|++++|.+.......+. .. ++|++|++++|.+.. ++..+.. .++|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 77 3334455555 888888888888766654333 33 588888888888765 4555544 347888
Q ss_pred EEccCCcCcccC-----CCCcCCCCCcEEEcCCCCCccC--------chhhhCCCCCCEEEccCCccccc
Q 007962 212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY 268 (583)
Q Consensus 212 L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~l--------~~~l~~~~~L~~L~l~~~~l~~~ 268 (583)
|++++|.+...+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+...
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 888888776432 3356667777777777763322 33455666777777777766543
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=174.84 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=139.3
Q ss_pred cCccEEEcCCCcchh--hhH--hhCCCCCCcEEEcCCCCCcc-cchhh--hCCCCccEEEccCCccccC-C----ccccc
Q 007962 45 VDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGS 112 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~--l~~--~~~~~~~L~~L~L~~~~l~~-l~~~~--~~~~~L~~L~L~~~~l~~l-~----~~~~~ 112 (583)
..++.+.+.++.++. +.. .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356677777666542 111 12234567778887777763 34455 6777778888877777632 2 22345
Q ss_pred cCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCC---C--CcccccCCCCcEEEecCCcceeechh---hhccc
Q 007962 113 ATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASW 183 (583)
Q Consensus 113 l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---l--~~~l~~l~~L~~L~l~~~~i~~~~~~---~~~~~ 183 (583)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.. + +..+..+++|++|++++|.+..++.. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 777777777777776554 466777777777777776542 2 12235667777777777777644432 24566
Q ss_pred ccCcEEEcCCCcCCcc-chhhcCC---ccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEE
Q 007962 184 TMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 259 (583)
Q Consensus 184 ~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~ 259 (583)
++|++|++++|.+... |..+..+ ++|++|++++|.+..+|..+. ++|+.|++++|.+..+|. +..+++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 7777777777777654 5444444 577777777777776666553 677777777777776544 56667777777
Q ss_pred ccCCccc
Q 007962 260 LHSNQLK 266 (583)
Q Consensus 260 l~~~~l~ 266 (583)
+++|.++
T Consensus 301 L~~N~l~ 307 (310)
T 4glp_A 301 LDGNPFL 307 (310)
T ss_dssp CSSTTTS
T ss_pred CcCCCCC
Confidence 7777655
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2e-19 Score=174.40 Aligned_cols=234 Identities=20% Similarity=0.238 Sum_probs=180.1
Q ss_pred hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCc-ccch-h
Q 007962 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-A 86 (583)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~-~l~~-~ 86 (583)
.-++++|+++++++||..++ +++++|+|++|+|+.+|. .|+++++|++|+|++|.+. .++. +
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp ETTEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred eCCEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 34689999999999999774 479999999999999985 6999999999999999975 4554 7
Q ss_pred hhCCCCccE-EEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccc-cccCCCCc-ccccC-C
Q 007962 87 IGELHMLKS-LDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-S 160 (583)
Q Consensus 87 ~~~~~~L~~-L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~l~~-~l~~l-~ 160 (583)
|.++++|++ +.+..|.++.++ ..|..+++|++|++++|.+..++. .+....++..+++.+ +.+..++. .+..+ .
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 889998876 555667888764 568899999999999999987764 445666788888865 45665543 34444 4
Q ss_pred CCcEEEecCCcceeechhhhcccccCcEEEcCC-CcCCccch-hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcC
Q 007962 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238 (583)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 238 (583)
.++.|++++|++..++..+|. ..+|+++.+.+ +.++.+|. .+..+++|+.|++++|.++.+|.. .+.+|+.|.+.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l 231 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRAR 231 (350)
T ss_dssp SCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECT
T ss_pred hhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhc
Confidence 688899999999988877554 46788888874 66777775 467888899999999988888753 35567777765
Q ss_pred CC-CCccCchhhhCCCCCCEEEccC
Q 007962 239 NN-ALSALPAELGKLSKLGTLDLHS 262 (583)
Q Consensus 239 ~~-~~~~l~~~l~~~~~L~~L~l~~ 262 (583)
++ .++.+| .+..+++|+.+++.+
T Consensus 232 ~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cCCCcCcCC-CchhCcChhhCcCCC
Confidence 54 445665 477788888888764
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.7e-19 Score=168.35 Aligned_cols=169 Identities=22% Similarity=0.346 Sum_probs=102.6
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 456677777777666664 36666677777777776666654 6666677777777666665443 66666666666666
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
|.+..+ ..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+.. +..+++|+.|++++|.++.++. +
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence 666655 3455666666666666666655 455566666666666666555543 5555555555555555555432 4
Q ss_pred cCCccccEEEccCCcCc
Q 007962 204 GSLSRLIRLDLHQNRIL 220 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~ 220 (583)
..+++|+.|++++|.+.
T Consensus 197 ~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCSEEEEEEEEEE
T ss_pred ccCCCCCEEECcCCccc
Confidence 45555555555555444
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.6e-19 Score=167.47 Aligned_cols=172 Identities=29% Similarity=0.373 Sum_probs=100.1
Q ss_pred cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 458 (583)
++.|+.|++++|.+..++. +..+++|++|++++|.+++... +..+++|+.|++++|.++.++. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 4556666666666655542 5556666666666666665544 4566666666666666655432 555666666666
Q ss_pred CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCC
Q 007962 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 538 (583)
++|.+... ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|++|++++|+|+.++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 66665553 2355566666666666666655 345556666666666666665543 5566666666666666665543
Q ss_pred CccccccccceeeccCCCCccch
Q 007962 539 ELGLLEPSLQALRLDGNPLRSIR 561 (583)
Q Consensus 539 ~~~~~~~~L~~L~l~~~~~~~~~ 561 (583)
+. .+++|+.|++++|+++..+
T Consensus 196 -l~-~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 196 -LA-GLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GT-TCTTCSEEEEEEEEEECCC
T ss_pred -hc-cCCCCCEEECcCCcccCCc
Confidence 22 2356666666666654433
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=7.4e-19 Score=178.89 Aligned_cols=187 Identities=29% Similarity=0.413 Sum_probs=162.7
Q ss_pred cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (583)
.+++.++++++.+..++..+ .++|++|++++|.++.+| ..+++|++|++++|.++.++. +.. +|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 47899999999999888766 378999999999999988 457999999999999998765 444 999999999
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 516 (583)
|.++.++. .+++|+.|++++|.++.+.. .+++|++|++++|.++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99999876 58999999999999987543 67899999999999999988 54 999999999999999987
Q ss_pred hcCCCCC-------CEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhcc
Q 007962 517 FKNLTSL-------TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 567 (583)
Q Consensus 517 l~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 567 (583)
+.. +| ++|++++|+|+.+|..++.+ ++|+.|++++|+++...+..+..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHH
Confidence 544 77 99999999999999988874 99999999999998877766654
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=175.95 Aligned_cols=199 Identities=24% Similarity=0.279 Sum_probs=148.0
Q ss_pred cccceeecCCCCCcc-CChhh--hccCCccEEEcCCCCCCcC-C----ccccCCCCCcEEEccCCCCCCCChhhhhcCCC
Q 007962 357 VTSKELSLEGMNLSA-IPSEI--WEAGEITKLDLSRNSIQEL-P----PELSSCASLQTLILSRNKIKDWPDAILTSLSS 428 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~l~~l-~----~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~ 428 (583)
.+++.+++++|.+.. .+..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+.......+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358888888888763 44444 6678888888888887762 2 22346888888888888888887777788888
Q ss_pred CcEEecCCCCCcc---CC-CCccCCCCcccEEeCCCCccCCCCCC---CCCCCCccceEeccccccccc-ccchhcc---
Q 007962 429 LSCLKLDNNPLRQ---VP-SDGFKDIPMLQILDLSYNIASLPENP---PFSSLPHLQELYLRRMQLREA-PTDILRL--- 497 (583)
Q Consensus 429 L~~L~l~~~~~~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~-~~~~~~~--- 497 (583)
|++|++++|++.+ ++ ...+..+++|++|++++|.++..... .+..+++|++|++++|.++.. |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 8888888888654 22 22246788888888888887643221 135678888888888888866 6666665
Q ss_pred CcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 498 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
++|++|++++|.++.+|..+. ++|++|++++|+|+.+|. . ..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~-~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-P-DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-T-TSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-h-hhCCCccEEECcCCCCCC
Confidence 688888888888888877664 788888888888887755 2 333888888888888865
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=8.6e-19 Score=178.39 Aligned_cols=186 Identities=31% Similarity=0.433 Sum_probs=140.3
Q ss_pred CccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCc
Q 007962 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~ 125 (583)
+++.|++++|.++.+|..+ +++|++|+|++|.++.+| ..+++|++|++++|.++.+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788888888887777644 367888888888877776 456788888888887777776 554 78888888888
Q ss_pred CCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcC
Q 007962 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (583)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (583)
++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.+..++. +. ++|+.|++++|.++.+|. +..
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence 877766 56788888888888877765 56788888888888777665 43 778888888888887776 443
Q ss_pred Cccc-------cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCC
Q 007962 206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKL 252 (583)
Q Consensus 206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~ 252 (583)
+| +.|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66 8899999988888888888889999999999887 445555543
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=9.1e-20 Score=176.47 Aligned_cols=246 Identities=15% Similarity=0.197 Sum_probs=186.4
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcc--cchh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA 86 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~ 86 (583)
+..+.+|++++++. |..+ .... .++++.|+++++.++..+..+.++++|++|++++|.+.. ++..
T Consensus 47 ~~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hhheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 34788999998876 2322 2110 168999999999998776667789999999999998873 6778
Q ss_pred hhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCC-cCC--cCCcccccCCCCCEEEcccc-ccCC--CCcccccC
Q 007962 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC 159 (583)
Q Consensus 87 ~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~l~~l 159 (583)
+..+++|++|++++|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .+.. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 899999999999999887 56677888999999999999 576 36667888999999999999 8873 56678889
Q ss_pred C-CCcEEEecCCc--ce-eechhhhcccccCcEEEcCCCc-CC-ccchhhcCCccccEEEccCCc-Cc-ccCCCCcCCCC
Q 007962 160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS 231 (583)
Q Consensus 160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~ 231 (583)
+ +|++|++++|. +. ......+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999994 43 1222347788999999999998 43 456678888999999999985 22 11235778999
Q ss_pred CcEEEcCCCCCccCchhhhCC-CCCCEEEccCCccccccc
Q 007962 232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCV 270 (583)
Q Consensus 232 L~~L~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~ 270 (583)
|+.|++++| +.. ..+..+ ..++.|++++|.++....
T Consensus 274 L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 274 LKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence 999999999 441 122222 235555688888876444
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=2.1e-19 Score=175.23 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=173.3
Q ss_pred EEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccc-----hhhhCCC-CccEEEccCCccccC-Ccccccc-----Cc
Q 007962 49 KLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-----AAIGELH-MLKSLDVSFNSIMKI-PDEIGSA-----TA 115 (583)
Q Consensus 49 ~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~-----~~~~~~~-~L~~L~L~~~~l~~l-~~~~~~l-----~~ 115 (583)
+++++++.++.. |..+...++|++|++++|.++..+ .++..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899999854 555666667999999999998765 5788888 999999999998854 4445554 89
Q ss_pred ccEEEcCCCcCCcCCc-----ccccC-CCCCEEEccccccCCCCc-----cccc-CCCCcEEEecCCcceeechhh----
Q 007962 116 LVKFDCSSNQLKELPS-----SLGRC-LNLSDFKASNNCITSLPE-----DLAD-CSKMSKLDVEGNKLTVLSNNL---- 179 (583)
Q Consensus 116 L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~l~~-----~l~~-l~~L~~L~l~~~~i~~~~~~~---- 179 (583)
|++|++++|.++..+. .+..+ ++|++|++++|.+...+. .+.. .++|++|++++|.+.......
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999885542 24455 799999999998875542 2334 468999999999888544433
Q ss_pred hcccc-cCcEEEcCCCcCCccc-----hhhcCC-ccccEEEccCCcCcc-----cCCCCcC-CCCCcEEEcCCCCCccCc
Q 007962 180 IASWT-MLTELIASKNLLNGMP-----ETIGSL-SRLIRLDLHQNRILS-----IPSSISG-CCSLAEFYMGNNALSALP 246 (583)
Q Consensus 180 ~~~~~-~L~~L~l~~~~~~~~~-----~~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~l~ 246 (583)
+...+ +|++|++++|.++... ..+..+ ++|+.|++++|.+.. ++..+.. .++|++|++++|.+...+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 8888888888875433 234445 488888888887775 4444544 457888888887777432
Q ss_pred -----hhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccc
Q 007962 247 -----AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (583)
Q Consensus 247 -----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (583)
..+..+++|++|++++|.+..+..... ..+...+.++++|+++++++|.+..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------------~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------------KALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------------HHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHH--------------HHHHHHhccCCceEEEecCCCcCCC
Confidence 234566777777777776543322211 1122345667788888888887643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.3e-18 Score=168.73 Aligned_cols=205 Identities=20% Similarity=0.240 Sum_probs=115.5
Q ss_pred ceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcE-EecCC
Q 007962 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSC-LKLDN 436 (583)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~-L~l~~ 436 (583)
++++.++++++.+|..+ .+++++|++++|.++.+|. .|.++++|++|++++|.+.+ ++...|.+++++.+ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 44555666666666554 3456666666666666654 45666666666666666543 34445566666554 33344
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc-cccccccc-hhcc-CcccEEeCCCCcCCcc
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREAPTD-ILRL-QQLRILDLSQNSLQSI 513 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~-~~~~-~~L~~L~l~~n~l~~l 513 (583)
|+++.++...|.++++|++|++++|.+.......+....++..+++.++ .+..++.. +..+ ..++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 6666666666666666666666666665555444444455555555443 45544432 2222 2455566666666555
Q ss_pred chhhcCCCCCCEEeCCC-CCCCcCCCCccccccccceeeccCCCCccchhHHhc
Q 007962 514 PEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 566 (583)
Q Consensus 514 ~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 566 (583)
|......++|++|++.+ |.++.+|+.++..+++|+.|++++|+++.++...+.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 55444445556666553 355555555554445666666666666555554443
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.3e-18 Score=152.01 Aligned_cols=175 Identities=27% Similarity=0.385 Sum_probs=107.0
Q ss_pred ceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC
Q 007962 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (583)
Q Consensus 360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 438 (583)
+.+...++.+..++..+ .+++++|++++|.++.++. .+..+++|++|++++|.+..+....|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 44555555555555443 3466666666666666544 35566666666666666666665556666666666666666
Q ss_pred CccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchhh
Q 007962 439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGF 517 (583)
Q Consensus 439 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l 517 (583)
++.++...|.++++|++|++++|.++......+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 6666655566666666666666666665555566666666666666666655543 445666666666666544
Q ss_pred cCCCCCCEEeCCCCCCC-cCCCCccc
Q 007962 518 KNLTSLTELDLSDNNIS-ALPPELGL 542 (583)
Q Consensus 518 ~~~~~L~~L~l~~~~l~-~~~~~~~~ 542 (583)
..+++|++|++++|+++ .+|..+..
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 23456666666666555 45544433
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=168.49 Aligned_cols=174 Identities=30% Similarity=0.369 Sum_probs=135.7
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhh-cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
+.++++++.++.+|..+. +.++.|++++|.++.+....|. .+++|+.|++++|.+..++...|.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 567777777777776543 4578888888888877776666 7888888888888888887777888888888888888
Q ss_pred ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccchhh----cCCCCCCEEeCCCCCCCcC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISAL 536 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~l----~~~~~L~~L~l~~~~l~~~ 536 (583)
.+.......+..+++|++|+|++|.++.+ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|+|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 88877777788888888888888888866 456677888888888888888887653 5688899999999988888
Q ss_pred CCCccccccc--cceeeccCCCCc
Q 007962 537 PPELGLLEPS--LQALRLDGNPLR 558 (583)
Q Consensus 537 ~~~~~~~~~~--L~~L~l~~~~~~ 558 (583)
+...+...+. ++.|++.+|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 7654443344 478999999886
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.3e-17 Score=150.89 Aligned_cols=153 Identities=33% Similarity=0.447 Sum_probs=132.1
Q ss_pred CccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (583)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 460 (583)
+.+.++.+++.++.+|..+. ++|++|++++|.+.......|..+++|+.|++++|.+..++...|.++++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45778888888888887554 8899999999999988887888999999999999999888888788999999999999
Q ss_pred CccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCc
Q 007962 461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISA 535 (583)
Q Consensus 461 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~ 535 (583)
|.++......+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9998887777888999999999999999888888888999999999999887764 47888899999999987763
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.9e-18 Score=175.72 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=130.3
Q ss_pred ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 567888888888887775 57778888888888888877765 778888888888888777665 577788888888888
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (583)
|.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+ +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 887776 3577778888888888877776 567777888888888887777655 777777888888877777664 46
Q ss_pred cCCccccEEEccCCcCccc
Q 007962 204 GSLSRLIRLDLHQNRILSI 222 (583)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~ 222 (583)
..+++|+.|++++|.+...
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 6777777777777776644
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.9e-18 Score=175.71 Aligned_cols=172 Identities=26% Similarity=0.365 Sum_probs=103.4
Q ss_pred cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (583)
Q Consensus 357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (583)
.+++.|.++++.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.... .+..+++|+.|+|++
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 34556666666665554 34556666666666666666554 556666666666666665543 245666666666666
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 516 (583)
|.+..++ .+..+++|+.|++++|.++.. ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.++ .
T Consensus 119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 6666542 255666666666666666554 345566666666666666665544 556666666666666666553 3
Q ss_pred hcCCCCCCEEeCCCCCCCcCCC
Q 007962 517 FKNLTSLTELDLSDNNISALPP 538 (583)
Q Consensus 517 l~~~~~L~~L~l~~~~l~~~~~ 538 (583)
+..+++|+.|++++|++...|.
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCCC
T ss_pred HccCCCCCEEEccCCcCcCCcc
Confidence 5566666666666666554444
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=8.9e-18 Score=149.97 Aligned_cols=170 Identities=32% Similarity=0.405 Sum_probs=147.2
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
-+.++.+++.++.+|..+ .++|++|++++|.+.......|..+++|++|++++|+++.++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467888888888888654 468999999999999988888899999999999999999998888899999999999999
Q ss_pred ccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCCCcCCCC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~ 539 (583)
.++......+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 99988877889999999999999999988765 57899999999999999987655 7889999999999997653
Q ss_pred ccccccccceeeccCCCCccc
Q 007962 540 LGLLEPSLQALRLDGNPLRSI 560 (583)
Q Consensus 540 ~~~~~~~L~~L~l~~~~~~~~ 560 (583)
.++.|+.|++++|.++..
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTT
T ss_pred ---CCCCHHHHHHHHHhCCce
Confidence 236788888888877643
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.1e-17 Score=149.56 Aligned_cols=152 Identities=27% Similarity=0.281 Sum_probs=138.5
Q ss_pred CcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccc
Q 007962 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484 (583)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 484 (583)
-+.++++++.++.++.. -.++|+.|++++|.+..+....|.++++|++|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 56799999998888763 348999999999999999888899999999999999999988888899999999999999
Q ss_pred ccccccccc-hhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 485 ~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
|.++.++.. +..+++|++|++++|.++.+|..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999988765 468999999999999999999999999999999999999999998777766999999999999864
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.6e-18 Score=151.77 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=89.0
Q ss_pred CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceE
Q 007962 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480 (583)
Q Consensus 401 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 480 (583)
.+++|+.|++++|.+.+++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++...+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555555443 2445555555555555444332 25555666666666666555444556666666666
Q ss_pred ecccccccc-cccchhccCcccEEeCCCCc-CCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962 481 YLRRMQLRE-APTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (583)
Q Consensus 481 ~l~~~~l~~-~~~~~~~~~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (583)
++++|.++. .+..+..+++|++|++++|. ++.+| .+..+++|++|++++|+++.++ .+. .+++|+.|++++|+|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~-~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIE-DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGG-GCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hhc-cCCCCCEEEeeCcccC
Confidence 666666663 45556667777777777776 66665 5667777777777777777665 222 2367777777777764
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=6.8e-18 Score=156.07 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=83.2
Q ss_pred CccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCc
Q 007962 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (583)
Q Consensus 46 ~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~ 125 (583)
+++.++++++.+++++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3444444444444443 3444444444444444444443 34444445555554444444433 4444455555555554
Q ss_pred CCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcC
Q 007962 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (583)
Q Consensus 126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (583)
++.++.... ++|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+..+ ..+..
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 444432221 45555555555555442 3555555555555555555543 255555555555555555544 44555
Q ss_pred CccccEEEccCCcCccc
Q 007962 206 LSRLIRLDLHQNRILSI 222 (583)
Q Consensus 206 ~~~L~~L~l~~~~~~~~ 222 (583)
+++|+.|++++|.+...
T Consensus 171 l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCCEEEEEEEEEECC
T ss_pred CCCCCEEeCCCCcccCC
Confidence 56666666666655543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=3.6e-17 Score=146.90 Aligned_cols=148 Identities=25% Similarity=0.377 Sum_probs=74.8
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (583)
+.++.+++.++.+|..+. ++++.|++++|.+..+....|..+++|+.|++++|.+..+....|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666655433 456666666665555555445555555555555555555544445555555555555555
Q ss_pred cCCCCCCCCCCCCccceEecccccccccc-cchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCC
Q 007962 463 ASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNN 532 (583)
Q Consensus 463 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~ 532 (583)
++......+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 55444444444555555555555444332 223344444444444444443332 23444444444444443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-18 Score=159.37 Aligned_cols=171 Identities=24% Similarity=0.279 Sum_probs=133.9
Q ss_pred HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (583)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~ 87 (583)
...+..++++++++++++. + . ++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +
T Consensus 18 l~~l~~l~l~~~~i~~~~~-~-~------------~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS-Q-K------------ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC-H-H------------HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred HHHHHHHHhcCCCcccccc-h-h------------hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence 3456677788888887773 2 1 1578888888888888886 67888888888888888888766 8
Q ss_pred hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEe
Q 007962 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l 167 (583)
..+++|++|++++|.++.++.... ++|++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence 888888888888888887765333 88888888888888774 5778888888888888888775 6788888888888
Q ss_pred cCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (583)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (583)
++|.+..+ ..+..+++|+.|++++|.+...+
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 88888877 34788888888888888776544
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=8.7e-18 Score=148.40 Aligned_cols=154 Identities=14% Similarity=0.267 Sum_probs=135.8
Q ss_pred hccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEE
Q 007962 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (583)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 456 (583)
..+++|++|++++|.+.+++ .+..+++|++|++++|.+.... .+..+++|++|++++|.++......+.++++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45788999999999999888 6889999999999999877664 47899999999999999998656669999999999
Q ss_pred eCCCCccCCCCCCCCCCCCccceEeccccc-ccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc
Q 007962 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535 (583)
Q Consensus 457 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~ 535 (583)
++++|.++...+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+|+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999988666778899999999999997 88886 6889999999999999999887 78899999999999998764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.8e-18 Score=163.49 Aligned_cols=172 Identities=26% Similarity=0.287 Sum_probs=146.5
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhC-CCCCCcEEEcCCCCCcccch-hh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLR-NLPLLTVLNVSHNKLSELPA-AI 87 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~-~~~~L~~L~L~~~~l~~l~~-~~ 87 (583)
..+++|++++++.+|..++ ..++.|+|++|.++.++. .|. ++++|++|+|++|.++.++. +|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---------------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---------------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CCEEEeCCCCcCccCccCC---------------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 4689999999999998774 368999999999998875 466 89999999999999998864 79
Q ss_pred hCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCCccc----ccCCC
Q 007962 88 GELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSK 161 (583)
Q Consensus 88 ~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~l----~~l~~ 161 (583)
..+++|++|+|++|.++.++. .|..+++|++|++++|.+..+ +..+..+++|++|++++|.+..++..+ ..+++
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 999999999999999987765 588899999999999999876 467889999999999999999887654 57899
Q ss_pred CcEEEecCCcceeechhhhccccc--CcEEEcCCCcCC
Q 007962 162 MSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLN 197 (583)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~--L~~L~l~~~~~~ 197 (583)
|++|++++|.+..++...+..++. ++.|++.+|.+.
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999999999888777888776 478888888764
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.8e-17 Score=146.70 Aligned_cols=151 Identities=26% Similarity=0.395 Sum_probs=120.7
Q ss_pred cceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (583)
Q Consensus 359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 437 (583)
-+.++++++.+..+|..+. +.+++|++++|.++.++. .+..+++|++|++++|.+..+.+..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3567777888887776553 678888888888887664 6778888888888888888777777788888888888888
Q ss_pred CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~ 511 (583)
.++.++...|.++++|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888877788888888888888888888777888888888888888888877654 566888888888888765
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.9e-17 Score=145.04 Aligned_cols=150 Identities=23% Similarity=0.380 Sum_probs=96.7
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCC-hhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
++++++++.++.+|..+. +.+++|++++|.++... ...|..+++|+.|++++|.++.++...|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 577777777777776443 34577777777777653 344567777777777777777766666677777777777777
Q ss_pred ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 534 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~ 534 (583)
.++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66666555566666666666666666654 34455566666666666666654 445556666666666666554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=146.89 Aligned_cols=152 Identities=24% Similarity=0.308 Sum_probs=127.6
Q ss_pred ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (583)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (583)
..+.++++++.+..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++.+....|..+++|++|+++
T Consensus 12 ~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 12 EGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3467888888888887755 345788999999888863 347888899999999998888887778889999999999
Q ss_pred CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~ 511 (583)
+|.++.++...|.++++|++|++++|.+....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999888888888899999999999998888888888899999999999988877 667778889999999998776
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=5.5e-19 Score=180.99 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=102.6
Q ss_pred ccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCC-------------Cc-ccchhhhCCCCccEEE-ccCCccccC
Q 007962 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (583)
Q Consensus 42 ~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~-------------l~-~l~~~~~~~~~L~~L~-L~~~~l~~l 106 (583)
+.+++|+.|+|++|.++.+|..++++++|+.|+++++. .. .+|..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45777888888888888888888888888888876653 11 2234555566666665 443332221
Q ss_pred Cc------cccc--cCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechh
Q 007962 107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178 (583)
Q Consensus 107 ~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~ 178 (583)
+. .+.. ...|+.|++++|.++.+|. ++.+++|++|++++|.+..+|..+..+++|++|++++|.+..
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~---- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----
Confidence 11 0111 1134555555555555443 455555555555555555555455555555555555554444
Q ss_pred hhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCccc--CCCCcCCCCCcEEEcCCCCCccCchh----hhCC
Q 007962 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKL 252 (583)
Q Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~----l~~~ 252 (583)
+| .++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|+. +..+
T Consensus 501 --------------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 501 --------------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp --------------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred --------------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 44 444455555555555555544 44555555555555555555543322 2335
Q ss_pred CCCCEEE
Q 007962 253 SKLGTLD 259 (583)
Q Consensus 253 ~~L~~L~ 259 (583)
++|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6666664
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=9.7e-16 Score=151.07 Aligned_cols=329 Identities=12% Similarity=0.170 Sum_probs=180.4
Q ss_pred chhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcC-Ccc
Q 007962 57 IEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL-PSS 132 (583)
Q Consensus 57 i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~-~~~ 132 (583)
+++|++ +|.+|.+|+.+.+..+ ++.|.+ +|.+|.+|+.+++.++ ++.++ ..|.++++|+.+.+..+ +..+ ..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 445542 4566666666666432 444433 5566666666666543 33322 23555555555554432 2222 123
Q ss_pred cccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccE
Q 007962 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIR 211 (583)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~ 211 (583)
|..+..++. .........-...|..|++|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+ ...+..+..|+.
T Consensus 136 F~~~~~~~~-~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEI-TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEE-ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eeccccccc-ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 444432222 2221111111234666667777766543 45566666777777777766654 2222 234556666666
Q ss_pred EEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291 (583)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (583)
+.+..+.. .+......+..|+.+.+.......-...+..+..++.+.+..+... +. .
T Consensus 213 i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~---------------------~ 269 (394)
T 4fs7_A 213 MEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IG---------------------G 269 (394)
T ss_dssp CCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-EC---------------------S
T ss_pred eecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-ee---------------------c
Confidence 66655432 2233344556777777765432222345666777777776554221 11 1
Q ss_pred hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371 (583)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 371 (583)
..+..+..++.+......+ +.
T Consensus 270 ~~F~~~~~l~~~~~~~~~i---~~-------------------------------------------------------- 290 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV---PE-------------------------------------------------------- 290 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE---CT--------------------------------------------------------
T ss_pred cccccccccceeccCceee---cc--------------------------------------------------------
Confidence 1344555555555433211 10
Q ss_pred CChhhhccCCccEEEcCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCC
Q 007962 372 IPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (583)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 450 (583)
..+..+.+|+.+.+.++ ++.++ .+|..|.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|
T Consensus 291 --~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 --KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp --TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred --ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 12233556677766543 44433 35778888888888643 66677778888888888888765 778888888889
Q ss_pred CcccEEeCCCCccCCCCCCCCCCCCccceE
Q 007962 451 PMLQILDLSYNIASLPENPPFSSLPHLQEL 480 (583)
Q Consensus 451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 480 (583)
++|+.+++..+ +... ..+|..+++|+.+
T Consensus 366 ~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 99998888754 2222 2457778877765
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=2.2e-15 Score=148.56 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=61.4
Q ss_pred cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 458 (583)
+..++.+......+.+ ..+..+.+|+.+.+.++ +..+...+|.+|.+|+.+++.. .++.+...+|.+|++|+.+++
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECC
T ss_pred ccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEE
Confidence 3444544444332211 23455666666666443 4444555566666666666653 355565566666666666666
Q ss_pred CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccE
Q 007962 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 502 (583)
..+ +..+...+|..|++|+.+.+..+ ++.+...+.+|++|+.
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 544 44455555666666666665443 2333334444555444
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=4.9e-18 Score=173.99 Aligned_cols=191 Identities=18% Similarity=0.187 Sum_probs=151.3
Q ss_pred HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCc--------------chhhhHhhCCCCCCcEE
Q 007962 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL 73 (583)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~--------------i~~l~~~~~~~~~L~~L 73 (583)
...+..+++++++++.+|..+.. +++|+.|+++++. ...+|..++++++|+.|
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence 45677899999999999988754 7889999987663 22445678888899999
Q ss_pred E-cCCCCCcccch------hhhC--CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEc
Q 007962 74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (583)
Q Consensus 74 ~-L~~~~l~~l~~------~~~~--~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 144 (583)
+ ++.+.+..++. .+.. ...|++|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|++|++
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 8 66665443322 1111 1369999999999999987 99999999999999999999999999999999999
Q ss_pred cccccCCCCcccccCCCCcEEEecCCcceeec-hhhhcccccCcEEEcCCCcCCccchhh----cCCccccEEE
Q 007962 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETI----GSLSRLIRLD 213 (583)
Q Consensus 145 ~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~ 213 (583)
++|.+..+| .+..+++|++|++++|.+..+. +..+..+++|+.|++++|.+...+... ..+++|+.|+
T Consensus 494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999987 8999999999999999998885 555888888888888888877655422 2356666664
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.4e-15 Score=146.02 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=54.1
Q ss_pred cCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCc-EEecCCCCCccCCCCccCCCCcccEE
Q 007962 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL 456 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 456 (583)
+++|+++++++|.++.++. +|.+|.+|+.+++.++ +..+...+|.+|++|+ .+++++ .++.++..+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 4455555555555555443 3555555555555554 4445555555555555 555554 4555555555555555555
Q ss_pred eCCCCccCCCCCCCCCCCCccceEe
Q 007962 457 DLSYNIASLPENPPFSSLPHLQELY 481 (583)
Q Consensus 457 ~l~~~~~~~~~~~~~~~l~~L~~L~ 481 (583)
+++++.+..+...+|..+++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555555555555555555554
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.2e-16 Score=132.74 Aligned_cols=134 Identities=24% Similarity=0.215 Sum_probs=95.9
Q ss_pred CCCCcEEecCCCCCc--cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc-cccchhccCcccE
Q 007962 426 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 502 (583)
Q Consensus 426 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~ 502 (583)
.++|+.|++++|.++ .++.. +..+++|++|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777766 44433 56677777777777777665 556777788888888887776 5555556788888
Q ss_pred EeCCCCcCCccc--hhhcCCCCCCEEeCCCCCCCcCCC---CccccccccceeeccCCCCccchh
Q 007962 503 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDGNPLRSIRR 562 (583)
Q Consensus 503 L~l~~n~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~ 562 (583)
|++++|.++.+| ..+..+++|++|++++|+++.+++ ..+..+++|+.|++++|.+.+++.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 888888887765 567778888888888888887776 334444788888888888776653
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=5.4e-16 Score=148.91 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred ccCCccEEEcCCCCCCcCCc-cccCCCCCc-EEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccE
Q 007962 378 EAGEITKLDLSRNSIQELPP-ELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (583)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 455 (583)
.+.+|++++++++ ++.++. +|.+|++|+ .+++.+ .++.+...+|.+|++|+.+++.++.++.++..+|.+|++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 4778999999887 666654 689999999 999988 788888889999999999999999999999999999999999
Q ss_pred EeC
Q 007962 456 LDL 458 (583)
Q Consensus 456 L~l 458 (583)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 874
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=130.88 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCc-CCcccccCCCCCEEE
Q 007962 67 LPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFK 143 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~ 143 (583)
.++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 355555555555555 4555555555555555555555544 445555555555555555554 444444455555555
Q ss_pred ccccccCCCC--cccccCCCCcEEEecCCcceeech---hhhcccccCcEEEcCCCcCCccc
Q 007962 144 ASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP 200 (583)
Q Consensus 144 l~~~~~~~l~--~~l~~l~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~ 200 (583)
+++|.+..++ ..+..+++|++|++++|.+..++. ..+..+++|+.|++++|....+|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 5555555543 445555555555555555554443 33445555555555555444443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.4e-15 Score=126.12 Aligned_cols=126 Identities=22% Similarity=0.209 Sum_probs=100.9
Q ss_pred CCCCcEEecCCCCCc--cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc-cccchhccCcccE
Q 007962 426 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 502 (583)
Q Consensus 426 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~ 502 (583)
.++|+.|++++|.++ .++. .+..+++|++|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467888888888877 4544 467788888888888888776 567888889999999998887 7766677899999
Q ss_pred EeCCCCcCCccc--hhhcCCCCCCEEeCCCCCCCcCCC---CccccccccceeeccC
Q 007962 503 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDG 554 (583)
Q Consensus 503 L~l~~n~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~ 554 (583)
|++++|.++.++ ..+..+++|++|++++|+++.+++ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998765 678889999999999999988877 4445558899988864
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=9.8e-16 Score=132.45 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=94.0
Q ss_pred CCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccc-cccCcc
Q 007962 38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATAL 116 (583)
Q Consensus 38 ~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L 116 (583)
...+.++.+|+.|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3445567788888888888877754333344788888888877776 56777778888888887777666544 677777
Q ss_pred cEEEcCCCcCCcCCc--ccccCCCCCEEEccccccCCCCcc----cccCCCCcEEEecCCcce
Q 007962 117 VKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT 173 (583)
Q Consensus 117 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~----l~~l~~L~~L~l~~~~i~ 173 (583)
++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|+++++...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777777776665 666777777777777777666553 666666666666666544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.2e-15 Score=128.13 Aligned_cols=122 Identities=23% Similarity=0.297 Sum_probs=69.4
Q ss_pred cCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc-CCccccccCcccEEEc
Q 007962 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC 121 (583)
Q Consensus 45 ~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~~L~~L~l 121 (583)
++++.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666666 5555556666666666666666655 555566666666666666554 4444445556666666
Q ss_pred CCCcCCcCC--cccccCCCCCEEEccccccCCCCc----ccccCCCCcEEEe
Q 007962 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV 167 (583)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l 167 (583)
++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666555443 445555555555555555554433 3444555555443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=5.9e-16 Score=163.79 Aligned_cols=195 Identities=20% Similarity=0.266 Sum_probs=107.8
Q ss_pred hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (583)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~ 88 (583)
+.+..++++++.+..++..+..... + .--.+..++++.+.+...++.|..+++|+.|+|++|.+..++..+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~-L-------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKK-L-------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCc-c-------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 3466777777777776655432100 0 0012333344445555455678888888888888888888887777
Q ss_pred CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~ 168 (583)
.+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcceeechhhhccccc-CcEEEcCCCcCCc-cchhhcCCccccEEEccCC
Q 007962 169 GNKLTVLSNNLIASWTM-LTELIASKNLLNG-MPETIGSLSRLIRLDLHQN 217 (583)
Q Consensus 169 ~~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~ 217 (583)
+|.+.......+..... ...+++++|.+.. +| ..|+.|+++.+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 88888665554544322 2235666666542 22 34555555554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=129.52 Aligned_cols=121 Identities=23% Similarity=0.382 Sum_probs=73.3
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGEL 90 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~ 90 (583)
.+++|++++++++|..++ +++++|++++|.++.+|..|.++++|++|+|++|.++.++. +|..+
T Consensus 13 ~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---------------RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCC---------------CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 466777777777776543 35677777777777666666777777777777777666643 56666
Q ss_pred CCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc
Q 007962 91 HMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN 147 (583)
Q Consensus 91 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 147 (583)
++|++|++++|.++.++. .|..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666666666666665443 35555555555555555555443 2344444444444444
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.9e-14 Score=139.58 Aligned_cols=261 Identities=14% Similarity=0.209 Sum_probs=178.9
Q ss_pred CCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHH
Q 007962 252 LSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (583)
Q Consensus 252 ~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 329 (583)
+..++.+.+.+. ++.++...+. .+|+.+.+.++ +..+... |.+ .+|+.+.+.. .+..++..+|.+.
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c-------- 179 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYC-------- 179 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTC--------
T ss_pred cCCccEEEECCc-cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCc--------
Confidence 466777777553 4444443332 34778887665 5554443 555 3688888875 5666666555443
Q ss_pred HhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC-ccccCCCCCcEE
Q 007962 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTL 408 (583)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L 408 (583)
.+|+.+.+.++.+..++...+.+.+|+.+.+..+ +..++ .+|..|++|+.+
T Consensus 180 ---------------------------~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 180 ---------------------------YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp ---------------------------TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred ---------------------------ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 3677888888888877777777788888888744 55544 367788888888
Q ss_pred EccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC-----CCCCCCCCCCCccceEecc
Q 007962 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS-----LPENPPFSSLPHLQELYLR 483 (583)
Q Consensus 409 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~ 483 (583)
++..+ ++.+....|.+ .+|+.+.+. +.++.++..+|.+|++|+.+++.++.+. .+...+|..|++|+.+.+.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 88764 56666666766 678888884 5577787788888888888888776554 4566678888888888888
Q ss_pred ccccccccc-chhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCcCCCCccccc-cccceeeccCCCCc
Q 007962 484 RMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLR 558 (583)
Q Consensus 484 ~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~ 558 (583)
+ .++.++. .+.+|++|+.+++..+ ++.+. .+|.++ +|+.+++.+|.+..++...+..+ ..++.|++-.+.+.
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 4 4665544 3446788888888554 66554 447777 88888888887777777666654 36777777766543
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.2e-13 Score=135.20 Aligned_cols=110 Identities=9% Similarity=0.133 Sum_probs=63.3
Q ss_pred cccCCCCCcEEEccCCCCC-----CCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCC
Q 007962 398 ELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFS 472 (583)
Q Consensus 398 ~l~~~~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 472 (583)
+|..|++|+.+++.++.+. .+...+|.+|++|+.+.+. +.++.+...+|.+|++|+.+++..+ +..+...+|.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence 4555666666666555443 3445556666666666666 3466666666666666666666443 5555555666
Q ss_pred CCCccceEecccccccccccc-hhccC-cccEEeCCCCcC
Q 007962 473 SLPHLQELYLRRMQLREAPTD-ILRLQ-QLRILDLSQNSL 510 (583)
Q Consensus 473 ~l~~L~~L~l~~~~l~~~~~~-~~~~~-~L~~L~l~~n~l 510 (583)
.+ +|+.+.+.++.+..++.. +.+++ .++.|.+..+.+
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 66 666666666655544332 23342 556666665543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=3.1e-15 Score=129.28 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=97.0
Q ss_pred hcCCCCcEEecCCCCCccCCCCccCCC-CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccch-hccCccc
Q 007962 424 TSLSSLSCLKLDNNPLRQVPSDGFKDI-PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLR 501 (583)
Q Consensus 424 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~L~ 501 (583)
..+.+|+.|++++|.++.++. +..+ ++|++|++++|.++.. ..+..+++|++|++++|.++.+|..+ ..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 455666666666666665532 3333 3777777777777655 45777788888888888888777555 6788888
Q ss_pred EEeCCCCcCCccch--hhcCCCCCCEEeCCCCCCCcCCCC---ccccccccceeeccCCCCccc
Q 007962 502 ILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPE---LGLLEPSLQALRLDGNPLRSI 560 (583)
Q Consensus 502 ~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~~~~~ 560 (583)
+|++++|.++.+|. .+..+++|++|++++|+++.++.. .+..+++|+.|++++|...+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 88888888888776 678888899999998888877775 233448889999988886554
No 133
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=2.1e-13 Score=134.36 Aligned_cols=130 Identities=13% Similarity=0.244 Sum_probs=87.0
Q ss_pred ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCc
Q 007962 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476 (583)
Q Consensus 397 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 476 (583)
.+|..|..|+.+.+.+. +..+....|.++++|+.+.+. +.++.++..+|.+|++|+.+++..+ ++.+...+|..|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35677888888887554 344556667888888888886 4577788888888888888888754 66666777888888
Q ss_pred cceEeccccccccccc-chhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCC
Q 007962 477 LQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN 532 (583)
Q Consensus 477 L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~ 532 (583)
|+.+.|..+ ++.+.. .|.+|++|+.+++.++... . ..+..+.+|+.+.+..+.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 888888654 555543 4557888888888877432 1 346677888888877663
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=7e-14 Score=122.37 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=91.6
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (583)
+.++++++.++.+|..+. ++|++|++++|.++.++ ..|..+++|+.|++++|.++.++...|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456677777776665443 56777777777777665 456777777777777777777776667777777777777777
Q ss_pred cCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 463 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~ 511 (583)
++...+.++..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777777777777888888888877777664 556778888888887664
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=5.4e-14 Score=123.18 Aligned_cols=127 Identities=24% Similarity=0.366 Sum_probs=77.4
Q ss_pred cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChh-hhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
+.++++++.++.+|..+. +++++|++++|.+..+... .|..+++|++|++++|.++++....|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 456666666666655433 2566666666666655442 3556666666666666666665555666666666666666
Q ss_pred ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~ 511 (583)
.++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66665555566666666666666666643 445556666666666666655
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.6e-13 Score=118.67 Aligned_cols=127 Identities=31% Similarity=0.421 Sum_probs=66.2
Q ss_pred cEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCC
Q 007962 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQN 508 (583)
Q Consensus 430 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n 508 (583)
+.++++++.++.++.. -.++|+.|++++|.+.......+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3444444444444322 123445555555554444444445555555555555555544433 345555666666666
Q ss_pred cCCccchh-hcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962 509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559 (583)
Q Consensus 509 ~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 559 (583)
.++.+|.. +..+++|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55554433 4556666666666666666665554444666666666666543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.9e-13 Score=118.17 Aligned_cols=128 Identities=28% Similarity=0.413 Sum_probs=72.6
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
.+.++++++.++.+|..+. ++|++|++++|.+..+....|..+++|++|++++|.++.++...|.++++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455666666655554322 45666666666666555555556666666666666666555555555666666666666
Q ss_pred ccCCCCCCCCCCCCccceEecccccccccccch-hccCcccEEeCCCCcCC
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~n~l~ 511 (583)
.++......+..+++|++|++++|.++.++... ..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 655555444555555555555555555554432 34555555555555544
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=7.4e-13 Score=130.42 Aligned_cols=126 Identities=15% Similarity=0.266 Sum_probs=76.0
Q ss_pred cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 458 (583)
+..|+.+.+......-...++..+++|+.+.+. +.+..+....|.+|.+|+.+.+.. .++.+...+|.+|++|+.+.+
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEE
T ss_pred cccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEE
Confidence 445555555543322223356667777777774 345566666777778888887764 367777777888888888887
Q ss_pred CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCc
Q 007962 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~ 509 (583)
..+ +..+...+|.+|++|+.+.+.++.... ..+..+..|+.+.+..+.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 643 666666777888888888877764331 344566777777776654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=8e-14 Score=122.08 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=118.4
Q ss_pred ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc--cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (583)
Q Consensus 358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (583)
..+.++++++.+..+|..+. ..+++|++++|.++.++. .+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 9 ~~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 34788999999999988664 389999999999999875 38899999999999999999988889999999999999
Q ss_pred CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc
Q 007962 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488 (583)
Q Consensus 436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 488 (583)
+|+++.++...|.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999999888999999999999999999988889999999999999999887
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=7.8e-14 Score=147.59 Aligned_cols=149 Identities=23% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCC---------CChhhhhcCCCCcEEecCCCCCccCCCCccCCC
Q 007962 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD---------WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (583)
Q Consensus 380 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 450 (583)
+.++.+++.++.+...+..+ ++.++++.+.+.. .....+..++.|+.|+|++|.+..++.. +..+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGC
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCC
Confidence 44666777666665544332 2223333332222 2233345555555555555555554443 2245
Q ss_pred CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCC
Q 007962 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 530 (583)
Q Consensus 451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~ 530 (583)
++|++|+|++|.++ ..+..+..+++|+.|+|++|.++.+|..++.+++|+.|++++|.++.+|..+..+++|++|+|++
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 55555555555554 22334455555555555555555555555555555555555555555554455555555555555
Q ss_pred CCCCc
Q 007962 531 NNISA 535 (583)
Q Consensus 531 ~~l~~ 535 (583)
|+|+.
T Consensus 326 N~l~~ 330 (727)
T 4b8c_D 326 NPLEK 330 (727)
T ss_dssp SCCCS
T ss_pred CccCC
Confidence 55553
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=2.2e-15 Score=132.99 Aligned_cols=128 Identities=29% Similarity=0.315 Sum_probs=92.8
Q ss_pred CccEEEcCCC--cchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962 46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (583)
Q Consensus 46 ~L~~L~ls~~--~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~ 123 (583)
.++...+.+. .++.+|..|.++++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 4455555544 45566667777888888888888877776 77777888888888887777777677777788888888
Q ss_pred CcCCcCCcccccCCCCCEEEccccccCCCCc--ccccCCCCcEEEecCCcceee
Q 007962 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVL 175 (583)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~i~~~ 175 (583)
|.++.++ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+...
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 8777765 56777778888888777776543 567777777777777776543
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.41 E-value=3.8e-11 Score=117.71 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=58.3
Q ss_pred ccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccc
Q 007962 132 SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRL 209 (583)
Q Consensus 132 ~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L 209 (583)
++....+|+.+.+.+. ++.++ ..|..|.+|+.+.+.. .+..|+..+|.++ +|+.+.+..+ +..+.. ++.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 3444455555555442 23332 2456666666666643 2556666666665 4555555433 222222 2222 356
Q ss_pred cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (583)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 263 (583)
+.+.+.++....-...+.++ +++.+.+..+--..-...+..+.+++.+.+...
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp SEEECCTTCCEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTT
T ss_pred ccccCCCccccccccccccc-eeeeeeccceeeccccchhcccccccccccccc
Confidence 66666543222112223333 455555444322222234555666666665544
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.1e-14 Score=128.52 Aligned_cols=116 Identities=23% Similarity=0.285 Sum_probs=80.6
Q ss_pred CcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccC
Q 007962 80 LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC 159 (583)
Q Consensus 80 l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l 159 (583)
++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++ .+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3445557778888888888888777776 777777788888877777777766666777777777777777664 56666
Q ss_pred CCCcEEEecCCcceeech-hhhcccccCcEEEcCCCcCC
Q 007962 160 SKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN 197 (583)
Q Consensus 160 ~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~ 197 (583)
++|++|++++|.+..++. ..+..+++|++|++++|.+.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 677777777766665543 34556666666666666553
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.3e-13 Score=113.25 Aligned_cols=102 Identities=28% Similarity=0.356 Sum_probs=60.7
Q ss_pred ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (583)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~ 89 (583)
++++|++++++++|..++ ++|++|++++|.++.+ +..|.++++|++|+|++|.++.+|. .|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~---------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCccCCCcC---------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 456666666666666542 3566666666666655 3456666666666666666666554 3456
Q ss_pred CCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCc
Q 007962 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE 128 (583)
Q Consensus 90 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~ 128 (583)
+++|++|++++|.++.+|.. +..+++|++|++++|++..
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 66666666666666655543 5555566666666555543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.1e-12 Score=112.17 Aligned_cols=102 Identities=28% Similarity=0.376 Sum_probs=69.2
Q ss_pred hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccch-hhh
Q 007962 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIG 88 (583)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~-~~~ 88 (583)
.++++|++++++++|..++ +++++|++++|.|+.+ +..|.++++|++|+|++|.++.++. .|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~---------------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP---------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCccCccCC---------------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 4567777777777776553 3577777777777766 3457777777777777777776655 456
Q ss_pred CCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCC
Q 007962 89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLK 127 (583)
Q Consensus 89 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~ 127 (583)
.+++|++|+|++|.++.++.. +..+++|++|++++|++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777777777777777666543 566666666666666654
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=9.1e-11 Score=114.97 Aligned_cols=310 Identities=12% Similarity=0.116 Sum_probs=177.4
Q ss_pred ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCcccCC-CCcCCCCC
Q 007962 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSL 232 (583)
Q Consensus 155 ~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L 232 (583)
++....+|+.+.+. ..+..|+..+|.+|.+|+.+.+..+ ++.+. .++..+ +|+.+.+..+ +..+.. +|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 45566778888885 4578888888888888888888654 44443 244444 5666665543 333322 2333 356
Q ss_pred cEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccc
Q 007962 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR 311 (583)
Q Consensus 233 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 311 (583)
+.+.+..+....-...+.++ .++.+.+..+ +..+ ...+.++..++.+.+......
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~-----------------------v~~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNS-SVKRIVIPKS-----------------------VTTIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp SEEECCTTCCEECTTTTTTC-CCCEEEECTT-----------------------CCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred ccccCCCccccccccccccc-eeeeeeccce-----------------------eeccccchhcccccccccccccccce
Confidence 66666543221111222222 3333333221 1111 123555666666666544321
Q ss_pred cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCC
Q 007962 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391 (583)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 391 (583)
......... +...........+..+..+.+....
T Consensus 172 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 172 YVAENYVLY----------------------------------------------NKNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp EEEETTEEE----------------------------------------------ETTSSEEEECCTTCCCSEEECCTTC
T ss_pred eecccceec----------------------------------------------ccccceeccccccccccccccccce
Confidence 111000000 0000011112223445555554433
Q ss_pred CCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCC
Q 007962 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471 (583)
Q Consensus 392 l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 471 (583)
.......+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 2223334566777777777543 45555566777888888888754 67777777888888888888643 555566678
Q ss_pred CCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCcCCCCccccc
Q 007962 472 SSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE 544 (583)
Q Consensus 472 ~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 544 (583)
..|++|+.+.+.++.++.++. .+.+|.+|+++++..+ ++.+. .+|.+|++|+++.+..+ ++.+....|..+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 888888888888777776654 3456788888888654 66554 45788888888888665 777777766664
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1.1e-11 Score=105.90 Aligned_cols=105 Identities=27% Similarity=0.376 Sum_probs=74.2
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
.++++++++.++.+|..+. ++|++|++++|.+..+....|..+++|++|++++|.++.++...|.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4667777777777776543 67777777777777776666677777777777777777777666677777777777777
Q ss_pred ccCCCCCCCCCCCCccceEeccccccc
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLR 488 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~ 488 (583)
.++...+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 776666666666677777777776655
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.2e-11 Score=106.04 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=78.6
Q ss_pred ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
-+.++++++.++.+|..+. ++|++|++++|.+..+.+..|..+++|+.|++++|+++.++...|.++++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3667777777777776553 67788888888777777766777777788888777777777666677777777777777
Q ss_pred ccCCCCCCCCCCCCccceEecccccccccc
Q 007962 462 IASLPENPPFSSLPHLQELYLRRMQLREAP 491 (583)
Q Consensus 462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 491 (583)
.+.......+..+++|++|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 777666666777777777777777666443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1e-13 Score=134.31 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=126.6
Q ss_pred cCCccEEEcCCCCCCc-----CCcccc-CCCCCcEEEccCCCCCCCChhhh-hcCCCCcEEecCCCCCccCCCCcc----
Q 007962 379 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF---- 447 (583)
Q Consensus 379 ~~~L~~L~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~---- 447 (583)
.+.|+++++++|.++. +...+. .+++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999876 222233 34799999999999876433322 346789999999999886543333
Q ss_pred -CCCCcccEEeCCCCccCCCCCC----CCCCCCccceEecccccccc-----cccchhccCcccEEeCCCCcCCc-----
Q 007962 448 -KDIPMLQILDLSYNIASLPENP----PFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 512 (583)
Q Consensus 448 -~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~n~l~~----- 512 (583)
...++|++|++++|.+++.... .+..+++|++|+|++|.++. +...+..+++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3578999999999988653322 23567899999999999883 34556677899999999999983
Q ss_pred cchhhcCCCCCCEEeCCCCCCCcCCCC----cccccc--ccceee--ccCCCCccc
Q 007962 513 IPEGFKNLTSLTELDLSDNNISALPPE----LGLLEP--SLQALR--LDGNPLRSI 560 (583)
Q Consensus 513 l~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~--~L~~L~--l~~~~~~~~ 560 (583)
++..+...++|++|++++|.|+..... +... . .|+.+. +.++.+++-
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~-~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA-AEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcC-CCccchhhHhhhcCCccCHH
Confidence 445567789999999999998832221 1111 2 177777 777776544
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=125.86 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=92.3
Q ss_pred cCccEEEcCCCcchhhh-----HhhC-CCCCCcEEEcCCCCCcc--cchhhhCCCCccEEEccCCcccc-----CCccc-
Q 007962 45 VDLQKLILAHNNIEKLK-----EDLR-NLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEI- 110 (583)
Q Consensus 45 ~~L~~L~ls~~~i~~l~-----~~~~-~~~~L~~L~L~~~~l~~--l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~- 110 (583)
+.|+.|++++|.++... ..+. ..++|++|+|++|.++. +......+++|++|+|++|.++. +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45777777777766322 2233 23577777777777652 11222344567777777776652 11122
Q ss_pred cccCcccEEEcCCCcCCc-----CCcccccCCCCCEEEccccccCC-----CCcccccCCCCcEEEecCCcceeechhh-
Q 007962 111 GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL- 179 (583)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~~~- 179 (583)
...++|++|++++|.++. ++..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.......
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 235667777777777652 33445666777777777776652 3445666677777777777776543322
Q ss_pred ---hcccccCcEEEcCCCcCC
Q 007962 180 ---IASWTMLTELIASKNLLN 197 (583)
Q Consensus 180 ---~~~~~~L~~L~l~~~~~~ 197 (583)
+...+.|++|++++|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 334567778888777775
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=1.8e-09 Score=104.30 Aligned_cols=102 Identities=27% Similarity=0.346 Sum_probs=61.3
Q ss_pred EEcCCC-CCCcCCccccCCCCCcEEEccC-CCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962 385 LDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (583)
Q Consensus 385 L~l~~~-~l~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 462 (583)
++.+++ .++.+|. +..+++|++|+|++ |.+..++...|..+++|+.|+|++|.+..++...|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5555665 66666666666664 66666655556666666666666666666655556666666666666666
Q ss_pred cCCCCCCCCCCCCccceEeccccccc
Q 007962 463 ASLPENPPFSSLPHLQELYLRRMQLR 488 (583)
Q Consensus 463 ~~~~~~~~~~~l~~L~~L~l~~~~l~ 488 (583)
++.+.+..+..++ |+.|+|.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6655544444444 666666666555
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.7e-09 Score=104.44 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=92.9
Q ss_pred cEEEccCC-CCCCCChhhhhcCCCCcEEecCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecc
Q 007962 406 QTLILSRN-KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483 (583)
Q Consensus 406 ~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 483 (583)
..++++++ .++.++. +..+++|+.|+|++ |.+..++...|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8888776 78999999999996 99999998889999999999999999999888889999999999999
Q ss_pred cccccccccchhccCcccEEeCCCCcCC
Q 007962 484 RMQLREAPTDILRLQQLRILDLSQNSLQ 511 (583)
Q Consensus 484 ~~~l~~~~~~~~~~~~L~~L~l~~n~l~ 511 (583)
+|.++.+|...+....|+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999887666555999999999887
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=2.1e-09 Score=102.99 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.8
Q ss_pred hhccCCccEEEcCCCCCC----------cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCC
Q 007962 376 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445 (583)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~----------~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 445 (583)
...+++|+.|.+.+.... ++...+..+|+|+.|.++++.-..+.. + .+++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence 445678888888654321 133445677889999998773222222 2 378889999888776543222
Q ss_pred cc--CCCCcccEEeCCC--Ccc-CCCCC----CCC--CCCCccceEecccccccc-cccch---hccCcccEEeCCCCcC
Q 007962 446 GF--KDIPMLQILDLSY--NIA-SLPEN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL 510 (583)
Q Consensus 446 ~~--~~~~~L~~L~l~~--~~~-~~~~~----~~~--~~l~~L~~L~l~~~~l~~-~~~~~---~~~~~L~~L~l~~n~l 510 (583)
.+ ..+|+|+.|+++. +.. .+... ..+ ..+|+|+.|.+.+|.+.. .+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 22 3678888888753 211 11100 112 357899999998887762 11222 2478899999998888
Q ss_pred Cc-----cchhhcCCCCCCEEeCCCCCCCcCCCCccccccc-cceeeccCCC
Q 007962 511 QS-----IPEGFKNLTSLTELDLSDNNISALPPELGLLEPS-LQALRLDGNP 556 (583)
Q Consensus 511 ~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~ 556 (583)
.. ++.++.++++|++|++++|.|+........ .. ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~--~alg~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ--KSLPMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH--HHCCSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH--HHcCCEEEecCCc
Confidence 73 445556778899999988877632111111 11 2456776665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=6.8e-09 Score=99.50 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=44.9
Q ss_pred hhCCCCCCcEEEcCCCCCc----------ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC-Cc
Q 007962 63 DLRNLPLLTVLNVSHNKLS----------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PS 131 (583)
Q Consensus 63 ~~~~~~~L~~L~L~~~~l~----------~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~ 131 (583)
+..++++|+.|.+...... .+...+..+|+|+.|++++|.-..++. + .+++|++|++..+.+..- ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 3456677777777543211 244456677777777777663123333 2 266777777766655411 12
Q ss_pred ccc--cCCCCCEEEcc
Q 007962 132 SLG--RCLNLSDFKAS 145 (583)
Q Consensus 132 ~~~--~~~~L~~L~l~ 145 (583)
.+. .+|+|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 222 56677776664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=4.3e-09 Score=90.97 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=68.3
Q ss_pred hhHhhCCCCCCcEEEcCCC-CCc-----ccchhhhCCCCccEEEccCCccc-----cCCccccccCcccEEEcCCCcCCc
Q 007962 60 LKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE 128 (583)
Q Consensus 60 l~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~ 128 (583)
+...+..++.|++|+|++| .+. .+...+...++|++|+|++|.++ .+...+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445666677777777776 665 23345566667777777777665 233344555666666666666652
Q ss_pred -----CCcccccCCCCCEEEc--cccccC-----CCCcccccCCCCcEEEecCCcce
Q 007962 129 -----LPSSLGRCLNLSDFKA--SNNCIT-----SLPEDLADCSKMSKLDVEGNKLT 173 (583)
Q Consensus 129 -----~~~~~~~~~~L~~L~l--~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~ 173 (583)
+...+...++|++|++ ++|.+. .+.+.+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3345556666666666 556655 23445555666777777666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=6.6e-09 Score=89.77 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=89.0
Q ss_pred ccccCccEEEcCCC-cch-----hhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc-----c
Q 007962 42 WEAVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM-----K 105 (583)
Q Consensus 42 ~~~~~L~~L~ls~~-~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~-----~ 105 (583)
...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. +...+...+.|++|+|++|.++ .
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34678999999999 886 355678889999999999999873 4556778889999999999887 2
Q ss_pred CCccccccCcccEEEc--CCCcCCc-----CCcccccCCCCCEEEccccccC
Q 007962 106 IPDEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (583)
Q Consensus 106 l~~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 150 (583)
+...+...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5667788889999999 8888872 4456778899999999999775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=3.1e-08 Score=82.82 Aligned_cols=83 Identities=8% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC-CccCCCCccCCC----CcccEEeCCCCc-cCCCCCCCCCCCCc
Q 007962 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDI----PMLQILDLSYNI-ASLPENPPFSSLPH 476 (583)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 476 (583)
.+|+.||+++|.+++.....+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. +++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666665555444445555666666665553 333222222221 234444444442 33333333334444
Q ss_pred cceEecccc
Q 007962 477 LQELYLRRM 485 (583)
Q Consensus 477 L~~L~l~~~ 485 (583)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=3.8e-07 Score=82.61 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=64.6
Q ss_pred CCCcccccCccE--EEcCCCcchhhhHh----hCCCCCCcEEEcCCCCCcccc---hhhhCCCCccEEEccCCccccCCc
Q 007962 38 GDKWWEAVDLQK--LILAHNNIEKLKED----LRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPD 108 (583)
Q Consensus 38 ~~~~~~~~~L~~--L~ls~~~i~~l~~~----~~~~~~L~~L~L~~~~l~~l~---~~~~~~~~L~~L~L~~~~l~~l~~ 108 (583)
-+.|...+.|+. ++++.|....++.. ..++++|+.|+|++|.++.++ ..+..+++|++|+|++|.+..+ .
T Consensus 134 Ls~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~ 212 (267)
T 3rw6_A 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-R 212 (267)
T ss_dssp CTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-G
T ss_pred HHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-h
Confidence 344555555665 66677765544432 256778888888888777543 4566777888888888777655 2
Q ss_pred cccccC--cccEEEcCCCcCCc-CC-------cccccCCCCCEEE
Q 007962 109 EIGSAT--ALVKFDCSSNQLKE-LP-------SSLGRCLNLSDFK 143 (583)
Q Consensus 109 ~~~~l~--~L~~L~l~~~~~~~-~~-------~~~~~~~~L~~L~ 143 (583)
.+..+. +|+.|++++|++.. ++ ..+..+|+|+.|+
T Consensus 213 ~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 213 ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 344444 67777777777652 32 1245556666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.3e-07 Score=79.15 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=43.5
Q ss_pred cccEEeCCCCccCCCCCCCCCCCCccceEecccc-ccccc-ccchhc----cCcccEEeCCCCc-CC--ccchhhcCCCC
Q 007962 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREA-PTDILR----LQQLRILDLSQNS-LQ--SIPEGFKNLTS 522 (583)
Q Consensus 452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~----~~~L~~L~l~~n~-l~--~l~~~l~~~~~ 522 (583)
.|+.||+++|.+++.+...+..+++|++|+|++| .++.- ...+.. +++|++|++++|. ++ ++ ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 4556666555555554444555666666666666 35521 112222 2356666666663 55 22 23455666
Q ss_pred CCEEeCCCC-CCC
Q 007962 523 LTELDLSDN-NIS 534 (583)
Q Consensus 523 L~~L~l~~~-~l~ 534 (583)
|++|++++| .++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 666666666 444
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=1.6e-06 Score=73.94 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=79.6
Q ss_pred ccCccEEEcCCC-cch-----hhhHhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc-----cCC
Q 007962 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (583)
Q Consensus 44 ~~~L~~L~ls~~-~i~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~ 107 (583)
.+.|+.|+|+++ .|. .+.+.+...+.|+.|+|++|.+. .+..++...+.|++|+|+.|.++ .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888999875 665 35567888888999999999887 34556778888999999999887 345
Q ss_pred ccccccCcccEEEcCCC---cCC-----cCCcccccCCCCCEEEccccccC
Q 007962 108 DEIGSATALVKFDCSSN---QLK-----ELPSSLGRCLNLSDFKASNNCIT 150 (583)
Q Consensus 108 ~~~~~l~~L~~L~l~~~---~~~-----~~~~~~~~~~~L~~L~l~~~~~~ 150 (583)
+.+..-+.|+.|+++++ .+. .+.+.+..-+.|++|+++.+.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 56677778999999865 333 23456777788999998876543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.97 E-value=6.8e-06 Score=70.10 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=75.4
Q ss_pred hhhHhhCCCCCCcEEEcCCC-CCc-----ccchhhhCCCCccEEEccCCccc-----cCCccccccCcccEEEcCCCcCC
Q 007962 59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK 127 (583)
Q Consensus 59 ~l~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~ 127 (583)
.+...+.+.+.|++|+|+++ .+. .+..++.....|+.|+|++|.++ .+...+...+.|++|+++.|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456778889999999885 776 34557778888999999988887 34445666777888888888776
Q ss_pred -----cCCcccccCCCCCEEEcccc---ccC-----CCCcccccCCCCcEEEecCCc
Q 007962 128 -----ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGNK 171 (583)
Q Consensus 128 -----~~~~~~~~~~~L~~L~l~~~---~~~-----~l~~~l~~l~~L~~L~l~~~~ 171 (583)
.+.+.+..-+.|++|+++++ .+. .+.+.+..-++|+.|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 33345555566777777654 222 233445555666666665443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=6.1e-06 Score=74.65 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=62.9
Q ss_pred cccCccEEEcCCCcchhhh---HhhCCCCCCcEEEcCCCCCcccchhhhCCC--CccEEEccCCccc-cCCc-------c
Q 007962 43 EAVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPAAIGELH--MLKSLDVSFNSIM-KIPD-------E 109 (583)
Q Consensus 43 ~~~~L~~L~ls~~~i~~l~---~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~--~L~~L~L~~~~l~-~l~~-------~ 109 (583)
++++|+.|+|++|+++.++ ..+..+++|+.|+|++|.+..+ ..+..+. +|++|+|++|.+. .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3678999999999999764 5678999999999999999977 3334344 9999999999987 3442 3
Q ss_pred ccccCcccEEEcC
Q 007962 110 IGSATALVKFDCS 122 (583)
Q Consensus 110 ~~~l~~L~~L~l~ 122 (583)
+..+++|+.||-.
T Consensus 247 l~~~P~L~~LDg~ 259 (267)
T 3rw6_A 247 RERFPKLLRLDGH 259 (267)
T ss_dssp HHHCTTCCEESSC
T ss_pred HHHCcccCeECCc
Confidence 6778999998753
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.57 E-value=6e-05 Score=60.12 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=48.0
Q ss_pred hceeeccCCcCC--CCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCc
Q 007962 11 SGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS 81 (583)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~ 81 (583)
-..+||++++++ .+|.+++ ++++.|+|++|.|+.++. .|..+++|+.|+|++|.+.
T Consensus 10 ~~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 10 GTLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 357999999999 9998774 469999999999999975 6888999999999998775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00025 Score=56.46 Aligned_cols=55 Identities=40% Similarity=0.633 Sum_probs=38.4
Q ss_pred EEeCCCCcCC--ccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962 502 ILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558 (583)
Q Consensus 502 ~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 558 (583)
.++.+++.++ .+|..+. ++|++|+|++|+|+.++...+...++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777776 6665432 46777777777777777777666677777777777764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.70 E-value=0.24 Score=36.72 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc
Q 007962 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485 (583)
Q Consensus 437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 485 (583)
..++.+...+|.+|++|+.+.+..+ ++.++..+|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555555555555555555532 44445555555555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.85 E-value=0.42 Score=35.44 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=38.5
Q ss_pred CCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (583)
Q Consensus 412 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 461 (583)
+-.++.+....|.+|.+|+.+.|.. .++.+...+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 3456667777888888888888875 477888888888999988888764
Done!