Query 007963
Match_columns 583
No_of_seqs 230 out of 1487
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2446 Glucose-6-phosphate is 100.0 1E-147 3E-152 1144.3 35.7 512 43-569 2-545 (546)
2 PTZ00430 glucose-6-phosphate i 100.0 7E-144 1E-148 1184.3 50.1 524 44-567 2-552 (552)
3 PLN02649 glucose-6-phosphate i 100.0 6E-142 1E-146 1171.8 50.1 528 44-571 7-558 (560)
4 PRK14095 pgi glucose-6-phospha 100.0 2E-139 4E-144 1143.5 46.2 506 44-566 6-532 (533)
5 PRK00179 pgi glucose-6-phospha 100.0 9E-139 2E-143 1145.4 48.6 511 43-569 3-547 (548)
6 PF00342 PGI: Phosphoglucose i 100.0 3E-125 7E-130 1031.4 31.7 458 89-562 1-486 (486)
7 PRK14096 pgi glucose-6-phospha 100.0 1E-113 2E-118 940.0 41.5 433 80-539 16-463 (528)
8 COG0166 Pgi Glucose-6-phosphat 100.0 6E-106 1E-110 865.7 37.1 433 85-559 3-446 (446)
9 PRK14097 pgi glucose-6-phospha 100.0 5.1E-87 1.1E-91 724.1 36.0 398 84-538 2-432 (448)
10 PRK00973 glucose-6-phosphate i 100.0 5E-86 1.1E-90 714.3 35.7 389 86-539 3-428 (446)
11 PRK03868 glucose-6-phosphate i 100.0 4.3E-82 9.3E-87 679.4 30.2 329 184-539 58-408 (410)
12 PRK09533 bifunctional transald 100.0 8.6E-62 1.9E-66 559.1 37.7 329 151-543 430-772 (948)
13 cd05016 SIS_PGI_2 Phosphogluco 100.0 9.4E-45 2E-49 345.4 10.7 152 374-537 1-164 (164)
14 cd05015 SIS_PGI_1 Phosphogluco 100.0 1.1E-33 2.4E-38 268.3 17.4 156 159-327 2-158 (158)
15 PRK08674 bifunctional phosphog 100.0 2.7E-30 5.8E-35 272.8 25.2 278 183-534 33-335 (337)
16 cd05798 SIS_TAL_PGI SIS_TAL_PG 99.9 1.1E-24 2.5E-29 198.9 8.4 119 377-537 3-129 (129)
17 TIGR02128 G6PI_arch bifunction 99.5 2.5E-12 5.5E-17 134.7 25.0 176 184-401 21-203 (308)
18 cd05017 SIS_PGI_PMI_1 The memb 99.2 2E-10 4.4E-15 103.7 11.1 108 186-320 1-111 (119)
19 PRK11382 frlB fructoselysine-6 98.1 5.8E-05 1.3E-09 80.4 15.8 106 161-294 29-136 (340)
20 COG2222 AgaS Predicted phospho 98.0 2.5E-05 5.5E-10 83.2 10.9 106 161-294 24-131 (340)
21 TIGR02815 agaS_fam putative su 98.0 3.8E-05 8.2E-10 82.9 12.0 110 160-295 26-139 (372)
22 cd05710 SIS_1 A subgroup of th 97.8 0.00019 4.1E-09 65.0 10.6 114 186-327 1-116 (120)
23 cd05008 SIS_GlmS_GlmD_1 SIS (S 97.7 0.0002 4.2E-09 64.6 8.8 87 187-294 2-90 (126)
24 TIGR00441 gmhA phosphoheptose 97.7 0.0004 8.6E-09 65.8 11.0 121 165-312 2-137 (154)
25 cd05005 SIS_PHI Hexulose-6-pho 97.7 0.00045 9.8E-09 66.6 11.6 107 161-307 20-128 (179)
26 TIGR03127 RuMP_HxlB 6-phospho 97.7 0.00042 9E-09 66.8 11.2 106 162-307 18-125 (179)
27 PRK13938 phosphoheptose isomer 97.6 0.00087 1.9E-08 66.3 13.0 109 185-309 46-168 (196)
28 cd05006 SIS_GmhA Phosphoheptos 97.6 0.001 2.2E-08 64.1 12.5 129 161-312 16-159 (177)
29 cd05013 SIS_RpiR RpiR-like pro 97.6 0.0017 3.7E-08 58.5 13.2 111 163-308 2-114 (139)
30 PRK11557 putative DNA-binding 97.5 0.0013 2.8E-08 67.8 12.5 101 162-293 116-218 (278)
31 COG0794 GutQ Predicted sugar p 97.5 0.0014 2.9E-08 65.0 12.0 96 186-306 41-138 (202)
32 cd05014 SIS_Kpsf KpsF-like pro 97.4 0.00059 1.3E-08 61.6 8.5 87 186-293 2-90 (128)
33 PRK15482 transcriptional regul 97.4 0.0017 3.8E-08 67.2 12.2 111 162-307 123-235 (285)
34 PRK13937 phosphoheptose isomer 97.3 0.0025 5.4E-08 62.3 11.9 95 185-293 39-149 (188)
35 PRK00414 gmhA phosphoheptose i 97.2 0.0041 9E-08 61.1 12.3 105 185-307 45-164 (192)
36 PRK00331 glucosamine--fructose 97.2 0.0044 9.5E-08 71.0 14.0 90 184-294 289-380 (604)
37 PLN02981 glucosamine:fructose- 97.2 0.0017 3.7E-08 75.5 10.6 91 183-294 362-454 (680)
38 PRK10886 DnaA initiator-associ 97.2 0.006 1.3E-07 60.4 12.9 109 185-308 42-166 (196)
39 PRK11337 DNA-binding transcrip 97.1 0.0041 9E-08 64.5 12.0 112 162-308 128-241 (292)
40 COG1737 RpiR Transcriptional r 97.1 0.0042 9E-08 64.6 11.8 102 162-294 118-221 (281)
41 PRK11543 gutQ D-arabinose 5-ph 97.1 0.0029 6.3E-08 66.4 10.6 103 162-294 29-133 (321)
42 cd04795 SIS SIS domain. SIS (S 97.1 0.0034 7.3E-08 52.4 9.0 80 187-286 1-81 (87)
43 TIGR01135 glmS glucosamine--fr 97.1 0.0049 1.1E-07 70.7 13.0 91 183-294 290-382 (607)
44 PTZ00295 glucosamine-fructose- 97.1 0.0017 3.7E-08 75.0 9.2 92 183-295 321-414 (640)
45 PF01380 SIS: SIS domain SIS d 97.1 0.0031 6.8E-08 56.6 9.0 102 184-309 5-108 (131)
46 PRK11302 DNA-binding transcrip 97.0 0.0078 1.7E-07 62.0 12.2 96 162-288 116-211 (284)
47 PRK13936 phosphoheptose isomer 96.8 0.018 3.9E-07 56.8 12.7 122 162-308 31-168 (197)
48 PRK10892 D-arabinose 5-phospha 96.7 0.016 3.4E-07 61.2 12.4 101 163-293 35-137 (326)
49 PTZ00394 glucosamine-fructose- 96.7 0.0081 1.7E-07 69.8 10.2 91 184-295 354-446 (670)
50 PRK14101 bifunctional glucokin 96.4 0.025 5.5E-07 65.4 11.9 101 162-293 456-557 (638)
51 cd05007 SIS_Etherase N-acetylm 96.3 0.048 1E-06 56.2 12.4 44 241-294 117-162 (257)
52 TIGR00393 kpsF KpsF/GutQ famil 96.2 0.023 4.9E-07 58.0 9.3 87 186-293 2-90 (268)
53 PRK05441 murQ N-acetylmuramic 96.1 0.063 1.4E-06 56.5 12.2 40 239-289 129-168 (299)
54 PRK12570 N-acetylmuramic acid- 96.1 0.071 1.5E-06 56.1 12.6 39 241-289 126-164 (296)
55 cd05009 SIS_GlmS_GlmD_2 SIS (S 96.0 0.027 5.8E-07 52.0 8.1 111 163-308 2-114 (153)
56 TIGR00274 N-acetylmuramic acid 95.7 0.047 1E-06 57.3 8.9 39 241-289 125-163 (291)
57 PRK02947 hypothetical protein; 95.3 0.13 2.9E-06 52.5 10.5 39 241-289 105-143 (246)
58 COG0449 GlmS Glucosamine 6-pho 94.2 0.14 3.1E-06 58.2 8.3 93 182-295 281-375 (597)
59 PF13580 SIS_2: SIS domain; PD 93.6 0.53 1.2E-05 43.6 9.5 99 165-287 26-138 (138)
60 COG0279 GmhA Phosphoheptose is 87.5 13 0.00027 36.2 12.5 91 185-288 42-145 (176)
61 PTZ00295 glucosamine-fructose- 80.4 11 0.00025 43.8 10.9 113 163-307 485-599 (640)
62 KOG1268 Glucosamine 6-phosphat 74.7 6.7 0.00014 44.2 6.3 141 184-349 355-508 (670)
63 COG1660 Predicted P-loop-conta 56.9 1.8E+02 0.004 30.5 12.2 131 185-349 2-138 (286)
64 TIGR03339 phn_lysR aminoethylp 56.4 45 0.00098 33.2 7.9 85 139-236 46-130 (279)
65 COG1434 Uncharacterized conser 54.6 88 0.0019 30.7 9.5 57 234-298 113-175 (223)
66 PRK13018 cell division protein 54.1 1.6E+02 0.0035 32.3 12.1 95 186-298 30-144 (378)
67 COG0206 FtsZ Cell division GTP 50.2 2.5E+02 0.0054 30.4 12.5 96 185-298 12-127 (338)
68 PF01339 CheB_methylest: CheB 49.7 5.4 0.00012 39.0 -0.0 64 189-256 1-64 (182)
69 PF05673 DUF815: Protein of un 49.5 97 0.0021 32.1 8.9 164 157-339 32-202 (249)
70 TIGR00065 ftsZ cell division p 49.2 1.3E+02 0.0028 32.6 10.4 73 186-273 19-99 (349)
71 PF06792 UPF0261: Uncharacteri 48.7 1E+02 0.0022 34.1 9.5 26 377-402 309-334 (403)
72 PRK09330 cell division protein 48.5 1.6E+02 0.0036 32.3 11.1 104 185-306 14-137 (384)
73 PF02887 PK_C: Pyruvate kinase 48.3 23 0.0005 31.7 3.8 41 244-298 18-58 (117)
74 PRK02261 methylaspartate mutas 47.9 2.3E+02 0.0051 26.3 11.4 99 187-304 6-118 (137)
75 PF02698 DUF218: DUF218 domain 47.6 83 0.0018 29.0 7.6 61 230-298 57-123 (155)
76 PF03668 ATP_bind_2: P-loop AT 46.0 1.3E+02 0.0028 31.8 9.4 95 185-298 2-102 (284)
77 PRK10494 hypothetical protein; 44.9 97 0.0021 32.0 8.3 65 230-308 140-210 (259)
78 cd06259 YdcF-like YdcF-like. Y 43.2 1.2E+02 0.0026 27.7 8.0 59 231-297 55-119 (150)
79 PRK12550 shikimate 5-dehydroge 42.1 65 0.0014 33.6 6.5 42 185-238 123-165 (272)
80 PLN02828 formyltetrahydrofolat 40.8 54 0.0012 34.2 5.7 53 242-307 70-131 (268)
81 cd02201 FtsZ_type1 FtsZ is a G 40.7 50 0.0011 34.8 5.5 73 186-273 2-82 (304)
82 PRK13010 purU formyltetrahydro 39.2 1.9E+02 0.0041 30.5 9.5 93 184-306 52-148 (289)
83 TIGR00655 PurU formyltetrahydr 38.8 85 0.0018 32.9 6.8 93 184-306 42-139 (280)
84 PRK03601 transcriptional regul 38.7 1.5E+02 0.0034 29.9 8.7 125 96-237 2-136 (275)
85 PF02254 TrkA_N: TrkA-N domain 37.4 2.7E+02 0.0059 24.0 9.8 68 218-298 41-111 (116)
86 cd02067 B12-binding B12 bindin 37.1 2.2E+02 0.0048 25.1 8.4 86 195-298 12-104 (119)
87 PF05377 FlaC_arch: Flagella a 37.1 25 0.00055 27.9 2.0 16 501-522 39-54 (55)
88 TIGR02370 pyl_corrinoid methyl 36.7 4.2E+02 0.0091 26.0 14.3 98 185-298 85-188 (197)
89 PLN02331 phosphoribosylglycina 35.6 54 0.0012 32.8 4.6 50 245-307 2-57 (207)
90 TIGR01501 MthylAspMutase methy 34.9 3.8E+02 0.0083 25.0 11.5 90 196-304 15-116 (134)
91 PF02056 Glyco_hydro_4: Family 34.8 45 0.00098 32.8 3.8 32 331-362 119-152 (183)
92 CHL00180 rbcR LysR transcripti 34.8 2E+02 0.0043 29.5 8.8 96 93-196 3-105 (305)
93 cd02191 FtsZ FtsZ is a GTPase 34.1 93 0.002 32.9 6.3 102 186-306 2-124 (303)
94 PRK11194 ribosomal RNA large s 33.7 2.7E+02 0.0059 30.4 9.9 49 158-208 134-182 (372)
95 PF13460 NAD_binding_10: NADH( 33.0 3.4E+02 0.0074 25.1 9.5 91 187-289 1-100 (183)
96 COG2185 Sbm Methylmalonyl-CoA 32.6 4.2E+02 0.009 25.2 9.6 103 181-304 10-121 (143)
97 PRK10837 putative DNA-binding 32.1 1.3E+02 0.0029 30.2 6.9 127 94-236 2-135 (290)
98 PRK02399 hypothetical protein; 31.6 7.6E+02 0.017 27.5 13.0 25 378-402 311-335 (406)
99 PRK06027 purU formyltetrahydro 30.4 1E+02 0.0022 32.4 5.7 52 243-307 90-145 (286)
100 PRK10094 DNA-binding transcrip 30.3 2.4E+02 0.0052 29.1 8.6 126 95-235 2-138 (308)
101 cd06211 phenol_2-monooxygenase 30.0 1.2E+02 0.0026 30.1 6.1 14 185-199 110-123 (238)
102 PF14606 Lipase_GDSL_3: GDSL-l 29.9 1.2E+02 0.0026 29.8 5.8 57 185-249 34-100 (178)
103 PF01041 DegT_DnrJ_EryC1: DegT 29.9 50 0.0011 35.3 3.5 48 217-271 85-138 (363)
104 PRK10537 voltage-gated potassi 29.8 3.9E+02 0.0085 29.4 10.4 31 280-313 330-363 (393)
105 PRK05442 malate dehydrogenase; 29.6 4E+02 0.0086 28.5 10.2 29 291-319 167-198 (326)
106 PRK11074 putative DNA-binding 28.8 3.8E+02 0.0083 27.3 9.8 126 95-235 2-137 (300)
107 cd06185 PDR_like Phthalate dio 27.4 4.2E+02 0.0091 25.5 9.3 97 185-303 99-206 (211)
108 cd02202 FtsZ_type2 FtsZ is a G 27.0 1.3E+02 0.0029 32.4 6.1 46 186-237 2-49 (349)
109 PTZ00394 glucosamine-fructose- 26.7 2.2E+02 0.0047 33.6 8.2 101 184-307 526-628 (670)
110 PRK12749 quinate/shikimate deh 26.5 2E+02 0.0044 30.1 7.2 44 185-239 125-171 (288)
111 cd06213 oxygenase_e_transfer_s 26.4 2.8E+02 0.0061 27.2 8.0 15 185-200 101-115 (227)
112 PRK11151 DNA-binding transcrip 26.3 4.4E+02 0.0095 26.8 9.7 125 97-236 3-137 (305)
113 PF04056 Ssl1: Ssl1-like; Int 26.2 1.4E+02 0.0031 29.6 5.7 57 193-253 78-140 (193)
114 cd06191 FNR_iron_sulfur_bindin 25.9 2.7E+02 0.0059 27.3 7.8 107 185-303 103-227 (231)
115 PF00056 Ldh_1_N: lactate/mala 25.7 2.5E+02 0.0054 26.0 7.0 52 251-303 82-140 (141)
116 PRK11139 DNA-binding transcrip 24.8 2.9E+02 0.0062 28.1 7.9 117 94-224 5-128 (297)
117 PF04816 DUF633: Family of unk 23.8 2.1E+02 0.0045 28.6 6.4 67 184-257 67-145 (205)
118 COG2103 Predicted sugar phosph 23.8 8.9E+02 0.019 25.6 11.7 116 151-290 33-167 (298)
119 PRK11382 frlB fructoselysine-6 23.5 7.1E+02 0.015 26.5 10.9 85 184-287 208-293 (340)
120 PRK13011 formyltetrahydrofolat 23.1 1.5E+02 0.0032 31.2 5.4 52 242-306 89-144 (286)
121 PLN02735 carbamoyl-phosphate s 23.0 5.9E+02 0.013 32.0 11.3 25 184-208 23-55 (1102)
122 PRK07535 methyltetrahydrofolat 23.0 6.2E+02 0.013 26.2 9.9 61 186-255 40-102 (261)
123 PF13419 HAD_2: Haloacid dehal 22.9 2.5E+02 0.0054 25.2 6.4 88 197-298 80-172 (176)
124 COG0569 TrkA K+ transport syst 22.8 5.3E+02 0.012 25.8 9.2 85 186-298 2-94 (225)
125 COG0820 Predicted Fe-S-cluster 22.7 1.3E+02 0.0029 32.6 5.1 45 158-207 132-176 (349)
126 PRK08351 DNA-directed RNA poly 22.7 69 0.0015 26.1 2.2 24 282-315 33-58 (61)
127 cd05292 LDH_2 A subgroup of L- 22.5 2.4E+02 0.0052 29.7 6.9 16 187-204 3-18 (308)
128 PRK12549 shikimate 5-dehydroge 22.3 2.4E+02 0.0051 29.4 6.8 43 185-239 128-171 (284)
129 PRK09791 putative DNA-binding 22.2 7.5E+02 0.016 25.0 10.5 130 94-236 4-140 (302)
130 cd01485 E1-1_like Ubiquitin ac 22.1 3.2E+02 0.0069 26.8 7.3 20 185-206 20-39 (198)
131 PRK10082 cell density-dependen 21.9 3.7E+02 0.0081 27.4 8.1 106 93-207 9-121 (303)
132 TIGR02424 TF_pcaQ pca operon t 21.7 7.5E+02 0.016 24.9 10.3 125 94-234 2-136 (300)
133 PRK00331 glucosamine--fructose 21.3 4.1E+02 0.0089 30.6 9.1 29 82-111 335-363 (604)
134 TIGR02853 spore_dpaA dipicolin 21.1 4.2E+02 0.0091 27.7 8.3 27 290-320 249-275 (287)
135 cd06215 FNR_iron_sulfur_bindin 20.6 3E+02 0.0066 26.8 6.9 23 281-303 198-227 (231)
136 PF02719 Polysacc_synt_2: Poly 20.1 1.5E+02 0.0032 31.5 4.6 43 187-239 1-43 (293)
No 1
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-147 Score=1144.33 Aligned_cols=512 Identities=54% Similarity=0.864 Sum_probs=483.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-hcccHHhhc-cChhHHhhhccccCC-----eEEecccCCCCHHHHHHHHHHHHHcChHHH
Q 007963 43 TLICDTEPWKDLKNHVQEI-KKTHLRDLM-SDTDRCQSMMVEFDG-----ILLDYSRQNATLKTMDKLYQLAEAAQLNNK 115 (583)
Q Consensus 43 ~~~~~~~~w~~L~~~a~~~-~~~~l~~lf-~d~~R~~~~~~~~~g-----l~lD~Skq~it~~~l~~L~~la~~~~l~~~ 115 (583)
..++++|+|++|++|+++. ++.+++++| +|++|++++++.+.+ |++|||||++|+++++.|+.||+.+++.++
T Consensus 2 ~~~t~~p~~~~lq~~~e~~~k~~~lk~lf~kD~~r~~k~~~~~~~~~~~~il~D~Skn~~tdE~v~~l~~laK~~~v~~~ 81 (546)
T KOG2446|consen 2 SLLTNLPAWQKLQRHVESDGKHLDLKDLFEKDPDRFEKFSLTFFTQKDGGILLDYSKNRITDEIVDLLLMLAKFRAVEEA 81 (546)
T ss_pred CcccccHHHHHHHHHHHHhhcchhHHHHHhhCHHHHHhhhhhhccCCCCcEEEEeccccccHHHHHHHHHHHHHhhHHHH
Confidence 3578999999999999885 559999999 799999999988755 999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccC
Q 007963 116 INRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGS 195 (583)
Q Consensus 116 ~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS 195 (583)
|++||+||+||.||||+|||+|||++.+.++.+||++++|+|+.++++|++|+++||+|.|+|+|||+|++||+||||||
T Consensus 82 ~d~mf~Ge~iN~tE~RaVlHvaLRn~~~~pi~~dg~~v~peV~~vL~~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGGS 161 (546)
T KOG2446|consen 82 RDAMFKGEHINFTENRAVLHVALRNRANRPILVDGKDVMPEVENVLDHIKEFSDDIRSGSWKGYTGKKITDVVNIGIGGS 161 (546)
T ss_pred HHHHhcCcccCCCCCceeeeHHhhCcccCceecCCcccchhHHHHHHHHHHHHHHhhcCCCCCCCCCeeeeEEEeccccc
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhc-C
Q 007963 196 FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTAL-G 274 (583)
Q Consensus 196 ~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~-g 274 (583)
+|||.|+++||++|. ..++++||++|+||.++++++++|+||+|||||+||||||.||+.|++.+++|++.+. +
T Consensus 162 dLGP~mVteALk~y~-----~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~w~~a~~~d 236 (546)
T KOG2446|consen 162 DLGPLMVTEALKPYG-----PGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKEWFLAKAKD 236 (546)
T ss_pred ccchHHHHHhhccCC-----CCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHHHHHHHHHhhcCC
Confidence 999999999999985 2468999999999999999999999999999999999999999999999999998873 2
Q ss_pred ccccCCeEEEEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCC
Q 007963 275 PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEK 354 (583)
Q Consensus 275 ~~~~~~h~vaVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~ 354 (583)
...+++||||+++|.....+|||+++|+|+||||||||||+||+|| ||+||.+|+++|++||.||+.||+||+++|+++
T Consensus 237 ~s~VAkhfvAlstN~~~v~~fgid~~nmF~fwDWVGGRySlwSAvG-LsiaL~iGf~Nfe~~L~GA~~mDehf~tTp~ek 315 (546)
T KOG2446|consen 237 PSAVAKHFVALSTNTAEVEKFGIDPKNMFEFWDWVGGRYSLWSAVG-LSIALYIGFDNFEKLLKGAHAMDEHFRTTPLEK 315 (546)
T ss_pred hHHHHHHHHHHhccHHHHHHhCCCcccccchhhhccCeeehhhhcC-cceeeehhHHHHHHHhhhhHHHHHHhhcCCccc
Confidence 3457899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCccccee
Q 007963 355 NIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQL 434 (583)
Q Consensus 355 N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Ql 434 (583)
|+|+++|++.+||.++.|+++++++||+++|.+|++|+||+.||||||.++++|.+|+|.||+++||++|||+|||||||
T Consensus 316 N~p~llal~~vwysn~~G~~t~~vlPYdqyl~rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivwGepGTn~QHaf~Ql 395 (546)
T KOG2446|consen 316 NIPVLLALLSVWYSNFFGAETHAVLPYDQYLHRFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVWGEPGTNGQHAFYQL 395 (546)
T ss_pred CHHHHHHHHHHHHhccCCCCceEEeehHHHHHHHHHHHHHhhhhhcCceeecCCccccccccceeecCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec-cccceeEEEecccCCcccccccccCchHHHHhhcccchHHHhCCCCHHHHhhcCCCCcchhHh------------
Q 007963 435 IHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHK------------ 501 (583)
Q Consensus 435 l~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~~~~p~~~~~~~------------ 501 (583)
+||| +.+|||||.++++++|++. -.+|+.+++||+||.+|||.|||.++++++|.+. ++||+
T Consensus 396 ihqGtr~ip~dFi~p~ks~~Pi~~----~~hh~~llsNf~aq~ealm~Gkt~~~~~~Eg~~~-l~phk~f~gnRpt~Si~ 470 (546)
T KOG2446|consen 396 IHQGTRLIPADFIEPLKSHNPIHD----GLHHKMLLSNFLAQTEALMVGKTPEEAKKEGTAS-LLPHKVFSGNRPTISIV 470 (546)
T ss_pred HhhccccccHHHhhhhhccCCccc----chhHHHHHhhhhcchHHHHcCCCHHHHHhccccc-ccchhhhcCCCCceeEE
Confidence 9999 8899999999999887742 2589999999999999999999999998877655 55554
Q ss_pred -----------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHhC
Q 007963 502 -----------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEAS 569 (583)
Q Consensus 502 -----------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~~ 569 (583)
|||+|||+++++|.+||||+|||||||+||++|++|+++|+.. .+...||+||..+|..++++.
T Consensus 471 ~~kvTP~tlGAlIA~YEh~ifv~g~iw~INSfdQwGVElGKklAk~V~~~l~~~----~~v~~~d~stn~li~~lk~~~ 545 (546)
T KOG2446|consen 471 LQKVTPFTLGALIALYEHKIFVQGIIWNINSFDQWGVELGKKLAKEVLAELDSS----GTVLTHDASTNGLINLLKEIA 545 (546)
T ss_pred eeccChHHHHHHHHHHHHHHhhheeEeccccccchhhHHHHHHHHHHHHHHhcc----ccccccccccchHHHHHHHhc
Confidence 9999999999999999999999999999999999999999863 234569999999999987753
No 2
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=6.5e-144 Score=1184.28 Aligned_cols=524 Identities=58% Similarity=0.949 Sum_probs=478.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhccChhHHhhhccccCCeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007963 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (583)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~ 123 (583)
+++++++|++|++|+++++..+|+++|.||+|+++|+++.+||++|||||+||++++++|+++|++++|+++|++||+|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~l~~~f~~~~R~~~~~~~~~~l~lD~sk~~v~~~~~~~l~~la~~~~l~~~~~~m~~G~ 81 (552)
T PTZ00430 2 DLESLKSYKNLLSLAEKLKKVHLRDLLKDEERNKSLIKEFKGVTLDLSRQRLDEETLKLLIELAEEAKLKEKIKDMFNGE 81 (552)
T ss_pred CCcccHHHHHHHHHHHHhccCCHHHHhcCcchHHhheeeeCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHHCCC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHH
Q 007963 124 KINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVH 203 (583)
Q Consensus 124 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~ 203 (583)
+||.||+|+|||||||+|.+.++.++|+++.+++++++++|++|+++||+|+|+|+|||+|++||+||||||+|||+|++
T Consensus 82 ~iN~tE~R~vlH~alR~~~~~~~~~~g~~~~~~v~~~l~~~~~f~~~v~~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~ 161 (552)
T PTZ00430 82 KINTTENRAVLHTALRAPRGEKVVVDGKNVLEDVHEVLDRIKKFSDKIRSGEILGSTGKKLKNVICIGIGGSYLGTEFVY 161 (552)
T ss_pred cCCCCCCcccccHhhcCCcCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCccCCCCCeeceEEEEcCCccchHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCc-cccCCeE
Q 007963 204 TALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGP-SAVAKHM 282 (583)
Q Consensus 204 ~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~-~~~~~h~ 282 (583)
+||.++........++++||++|+||.++.++++.+||++|||||+||||||.||++|++.+++||.+++|. ....+||
T Consensus 162 ~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~ 241 (552)
T PTZ00430 162 EALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHL 241 (552)
T ss_pred HHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeE
Confidence 999976321001124689999999999999999999999999999999999999999999999999876553 3467899
Q ss_pred EEEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 007963 283 VAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGL 362 (583)
Q Consensus 283 vaVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAl 362 (583)
||||++.+.|+++||+++|+|+||||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|||++||+
T Consensus 242 vavT~~~~~a~~~gi~~~~~f~~~d~VGGRySv~SaVGLlP~al~~G~d~~~~lL~GA~~md~hf~~~~~~~N~pvllal 321 (552)
T PTZ00430 242 CAVSTNLKLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDMDEHFRTAPLEENLPVLLGL 321 (552)
T ss_pred EEEcCchHHHHHcCCchhcEecCcCCcCCcceeeccchhHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHH
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccc
Q 007963 363 LSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP 442 (583)
Q Consensus 363 l~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~ 442 (583)
+.+||.+++|+++++++||+++|++||.|+|||+||||||+++++|++++++|||++||++||+|||||+||+|||+.+|
T Consensus 322 l~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~v~~~G~~v~~~tG~~~~G~~Gt~dQHSf~QllhqG~~~~ 401 (552)
T PTZ00430 322 TSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLDYNTGEIYFGEPGTNGQHSFYQLLHQGRVVP 401 (552)
T ss_pred HHHHHHhcCCCCeEEEEecHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCccceeeCCCCCCcchhHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred eeEEEecccCCcccccccccCchHHHHhhcccchHHHhCCCCHHHHhhc--------------CCCCcchhHh-------
Q 007963 443 CDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE--------------NVAPHLIPHK------- 501 (583)
Q Consensus 443 ~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~~--------------~~p~~~~~~~------- 501 (583)
+|||.+.+++++..+++....+|+.|++||++|.++|++|++..++..+ |+|+.++-.+
T Consensus 402 ~~FI~~~~~~~~~~i~~~~~~~~~~llan~laq~~aL~~Gk~~~~~~~~~~~~~l~~~~~~~gnrPs~~I~l~~l~p~~l 481 (552)
T PTZ00430 402 SEFIGFAKSQNPIKLLGEPVSNHDELMSNFFAQPDALAFGKTYEELEKEGVPEELIPHKVFPGNRPSLLLLFPELNPYTI 481 (552)
T ss_pred eEEEEEeccCCCcCcCccccccHHHHHhhhHHHHHHHHcCCCHHHHHhccchhhhhhcccCCCCCceEEEEeCCCCHHHH
Confidence 9999999875554344333357999999999999999999998876643 5665443221
Q ss_pred --HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCC---CCCCCChhHHHHHHHHHH
Q 007963 502 --LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKRE---PIEGFNFSTTTLLTRYLE 567 (583)
Q Consensus 502 --LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~---~~~~~d~st~~li~~~~~ 567 (583)
||++|||+|+|+|++||||||||||||+||++|++|+..+.+....+. ....+|+||++||++|+.
T Consensus 482 G~LialyEh~v~v~G~lwgINpFDQpGVElGK~la~~i~~~~~~~~~~~~~~~~~~~~d~st~~li~~~~~ 552 (552)
T PTZ00430 482 GQLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLFKDNRSNSSPHAKESKFNGSTKRLLSYYLQ 552 (552)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHHhcccccccccccccCCChHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999976421000 034599999999999863
No 3
>PLN02649 glucose-6-phosphate isomerase
Probab=100.00 E-value=6e-142 Score=1171.85 Aligned_cols=528 Identities=73% Similarity=1.151 Sum_probs=482.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhccChhHHhhhccccCCeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007963 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (583)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~ 123 (583)
.++.+++|++|++|++..++.+|+++|+||+|+++|+++++||++|||||+||++++++|++||++++|.++|++||+|+
T Consensus 7 ~~~~~~~w~~l~~~~~~~~~~~l~~lf~~~~R~~~~~~~~~~l~~D~sk~~v~~~~l~~l~~la~~~~l~~~~~~m~~G~ 86 (560)
T PLN02649 7 LISDTPAWKRLVAHVYQIKKTHLRELLNDAERCQSMIAEFDGIYLDYSRQRVTDETMELLFPLAEAANLFEKIEAMFSGE 86 (560)
T ss_pred CCcccHHHHHHHHHHHHhccCCHHHHhcCccchhhceeeeCCEEEEccCCcCCHHHHHHHHHHHHhCChHHHHHHHhCCC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHH
Q 007963 124 KINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVH 203 (583)
Q Consensus 124 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~ 203 (583)
+||.||+|+|||||||.|.+.++.++|+++.++|++++++|++|+++||+|+|+|+||++|++||+||||||+|||+|++
T Consensus 87 ~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~v~~~l~r~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~LGp~~v~ 166 (560)
T PLN02649 87 IINSTEDRAVLHVALRAPRLAPILVDGKNVVPEVWEVLDKIKAFSEDVRSGKWKGATGKRFTNVVSIGIGGSFLGPLFVH 166 (560)
T ss_pred CCCCCCCcchhhHHhhCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCcccCCCCccceEEEEecCcchHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEE
Q 007963 204 TALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMV 283 (583)
Q Consensus 204 ~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~v 283 (583)
+||.++........++++||++|+||.++.++++.++|++|||||+||||+|.||++|++.+++||.+++|...+.+|||
T Consensus 167 ~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~v 246 (560)
T PLN02649 167 EALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMV 246 (560)
T ss_pred HHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEE
Confidence 99997642111123458999999999999999999999999999999999999999999999999987765444679999
Q ss_pred EEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 007963 284 AVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLL 363 (583)
Q Consensus 284 aVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll 363 (583)
+||++.++++.+|++..++|+||||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|||++||++
T Consensus 247 avT~~~~l~~~a~~~~~~~F~~~d~VGGRfSv~SavGLlP~ala~G~d~~~~lL~GA~~md~hf~~~~~~~N~p~llAll 326 (560)
T PLN02649 247 AVSTNLLLVNKFGIDPWNAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEFLEGAASMDEHFRTAPLKENIPVLLGLL 326 (560)
T ss_pred EECCChHHHHHhCcCCccEEeCCCCCCCceeecchhhHHHHHHHhCHHHHHHHHHHHHHHHHHHhcCChhhCHHHHHHHH
Confidence 99999999999999988999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccce
Q 007963 364 SIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPC 443 (583)
Q Consensus 364 ~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~ 443 (583)
.+|+.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|||++||++||+|||||+||+|||+.+|+
T Consensus 327 ~~~~~~~~g~~~~vilpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~tG~~~~g~~Gt~dQHSf~QllhqG~~~~~ 406 (560)
T PLN02649 327 SVWNSSFLGYPARAILPYSQALLKFAPHIQQLDMESNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLIHQGRNIPC 406 (560)
T ss_pred HHHHHhcCCCCeEEEeccchhHHHHHHHHHHHHHHhcCCccccCCCCcccCccceEecCCCCCchHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977899
Q ss_pred eEEEecccCCccccc-ccccCchHHHHhhcccchHHHhCCCCHHHHhhc--------------CCCCcchh------Hh-
Q 007963 444 DFIGVVKSQQPVYLK-GEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE--------------NVAPHLIP------HK- 501 (583)
Q Consensus 444 dfi~~~~~~~~~~~~-~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~~--------------~~p~~~~~------~~- 501 (583)
|||.+.+++++..++ ....++|+.|++||+||.+||++|++.+++..+ |+|..++- +.
T Consensus 407 ~FI~~~~~~~~~~i~~~~~~~~~~~L~an~~aq~~aL~~Gk~~~~~~~~~~~~~l~~~~~~~gnrPs~~i~l~~l~p~~l 486 (560)
T PLN02649 407 DFIGVVRSQQPVHLWLGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAEGVPEELIPHKVFAGNRPSLSILLPELTAYTV 486 (560)
T ss_pred EEEEECCcCCccccccccccchHHHHHHHHHhhHHHHHcCCCHHHHHhhcchhhhhhcccCCCCCceEEEEeCCCCHHHH
Confidence 999988775544333 222468999999999999999999998876543 55654332 11
Q ss_pred --HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHhCCC
Q 007963 502 --LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEASSD 571 (583)
Q Consensus 502 --LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~~~~ 571 (583)
|+++|||+|+|+|++||||||||||||+||++|++|+..+++.+..+....+||+||++||++|+.+...
T Consensus 487 G~LialyEh~v~v~G~lw~IN~FDQpGVElGK~la~~i~~~l~~~~~~~~~~~~~d~sT~~li~~~~~~~~~ 558 (560)
T PLN02649 487 GQLLALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRAVLNEARTKGEPVEGFNSSTTALLNHYLANKRA 558 (560)
T ss_pred HHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999753211122346999999999999987654
No 4
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2e-139 Score=1143.49 Aligned_cols=506 Identities=37% Similarity=0.607 Sum_probs=466.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcccHHhhccChhHHhhhccccCCeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCC
Q 007963 44 LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGE 123 (583)
Q Consensus 44 ~~~~~~~w~~L~~~a~~~~~~~l~~lf~d~~R~~~~~~~~~gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~ 123 (583)
+++++++|++|++|++++++.+++++| ||+|+++|+++.+||++|||||+||++++++|++||++++|+++|++||+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~R~~~~~~~~~~l~~d~sk~~~~~~~~~~l~~la~~~~l~~~~~~m~~G~ 84 (533)
T PRK14095 6 NFLDLESFKILQELAPEPLDLTLPGVL-SEERIKKYSLSGEGFTYNYATERVDDRILAALQNLADEAELIEKMKAMQNGA 84 (533)
T ss_pred CcccCHHHHHHHHHHHhhccCChhhhc-CchhHHhceeecCCEEEEccCCcCCHHHHHHHHHHHHHCCcHHHHHHHhCcc
Confidence 467889999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCcceeeeeccCCCCcccc-cCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCch
Q 007963 124 KIN-----STENRSVLHVALRAPRDAAIN-SDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFL 197 (583)
Q Consensus 124 ~iN-----~tE~R~vlH~aLR~~~~~~~~-~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~L 197 (583)
+|| .||+|+|||||||+|.+.++. ++|+++.++++++++||++|+++||+|+|+|+|||+|++||+||||||+|
T Consensus 85 ~iN~~~~~~tE~R~vlH~alR~~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~L 164 (533)
T PRK14095 85 VINRIEGFPSENRPVLHTATRGQVGDSVLTDEAEDMAEFSKRELERLAEFLKKVRSGEIKNSNGKKFTTVVQIGIGGSDL 164 (533)
T ss_pred cccCCCCCCCCCcchhhHHhhCcCCCCccccCcchhhHHHHHHHHHHHHHHHHHHcCCccCCCCCccceEEEEecCcchH
Confidence 999 999999999999999888764 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccc
Q 007963 198 GPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSA 277 (583)
Q Consensus 198 Gp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~ 277 (583)
||+|++++|.++. ..+.++||++|+||.++.+++..++|++|||||+||||+|.||++|++.+++|+++. |. .
T Consensus 165 Gp~av~~AL~~~~-----~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~wl~~~-G~-~ 237 (533)
T PRK14095 165 GPKALYLALKNYA-----KKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRDALKKA-GL-D 237 (533)
T ss_pred hHHHHHHHHHhhc-----cCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHc-Cc-c
Confidence 9999999999753 234589999999999999999999999999999999999999999999999999776 43 3
Q ss_pred cCCeEEEEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHH
Q 007963 278 VAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIP 357 (583)
Q Consensus 278 ~~~h~vaVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p 357 (583)
+.+||||||++.+.+.++ ....++|++|||||||||+||+|||||+|+++|+|+|++||+||++||+||+++|+++|+|
T Consensus 238 ~~~h~VaVT~~~s~l~~~-~~~~~~f~~~d~VGGRfSv~SavGLlp~ala~G~d~~~~lL~GA~~mD~hf~~~~~~~N~p 316 (533)
T PRK14095 238 YKKHFIAVTSEGSPMDDE-SGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFLKGAAAMDKAALNPNIRENLP 316 (533)
T ss_pred ccceEEEEECCchHHHhh-cCccccCCCCCCCCCcccccccchHHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhhCHH
Confidence 678999999988755565 3555799999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeee
Q 007963 358 VLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQ 437 (583)
Q Consensus 358 ~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~q 437 (583)
+++|++++||.+++|+++++++||+++|++||.|+|||+||||||+++++|++|+++|||++||++||+|||||+|||||
T Consensus 317 ~l~All~~~~~~~~g~~~~~~lpY~~~L~~f~~~lqQL~mESnGK~v~~~G~~v~~~t~pi~wg~~Gt~~QHSf~Qllhq 396 (533)
T PRK14095 317 LLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDMESNGKSVNRFGEPINFKTGPIIWGEPGTNGQHSFFQLLHQ 396 (533)
T ss_pred HHHHHHHHHHhccCCCCeEEEecchHHHHHHHHHHHHHHHHhcCCccccCCCCcccCcccceecCCCCCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccceeEEEecccCCcc--cccccccCchHHHHhhcccchHHHhCCCCHHHHhh---cCCCCcch------hHh---H
Q 007963 438 G-RVIPCDFIGVVKSQQPV--YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQK---ENVAPHLI------PHK---L 502 (583)
Q Consensus 438 G-~~~~~dfi~~~~~~~~~--~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~---~~~p~~~~------~~~---L 502 (583)
| +.+|+|||.+.+++++. .+++ ..+|+.|++||+||.+||+.|++.+...+ .|+|+.++ |+. |
T Consensus 397 G~~~~~~dFI~~~~~~~~~d~~i~~--~~~~~~L~an~~Aq~~al~~G~~~~~~~~~~~gnrPs~~i~l~~l~p~~lG~L 474 (533)
T PRK14095 397 GTDIVPVEFIGFKESQLGQDIVIQG--STSQQKLFANLIAQIIALACGKENTNPNKNFKGNRPSSLLVAKQLTPYTLGAL 474 (533)
T ss_pred CCCCcceeEEEEcCCCCcccccCCC--CchHHHHHHHHHHHHHHHhcCCccchhhhhcCCCCceEEEEeCCCCHHHHHHH
Confidence 9 68999999988865432 2332 34789999999999999999999875544 68998654 322 9
Q ss_pred HHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHH
Q 007963 503 LAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYL 566 (583)
Q Consensus 503 ialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~ 566 (583)
+++|||+|+|+|++||||||||||||+||++|++|+..+.+. . .++|+||++||+++.
T Consensus 475 ialyEh~v~v~G~lwgIN~FDQ~GVElGK~la~~il~~~~~~-----~-~~~d~st~~li~~~~ 532 (533)
T PRK14095 475 LAHYENKVMFQGFCWNINSFDQEGVQLGKVLANQILGIMKGE-----A-PGEFPEADGLLKLFN 532 (533)
T ss_pred HHHHHHHHHHheeecCcCCCCchHHHHHHHHHHHHHHHhcCC-----C-CCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999752 1 469999999998874
No 5
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=100.00 E-value=9.5e-139 Score=1145.37 Aligned_cols=511 Identities=48% Similarity=0.827 Sum_probs=474.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhcccHHhhc-cChhHHhhhccccCCeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhc
Q 007963 43 TLICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYN 121 (583)
Q Consensus 43 ~~~~~~~~w~~L~~~a~~~~~~~l~~lf-~d~~R~~~~~~~~~gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~ 121 (583)
..++.+++|++|++|+.++++.+|+++| +|++|+++|+++++||++|||||+||++++++|+++|++++|+++|++||+
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~l~~lf~~~~~R~~~~~~~~~~~~lD~sk~~i~~~~~~~l~~la~~~~l~~~~~~~~~ 82 (548)
T PRK00179 3 INLTQTPAWQALQAHADEIKDVHLRDLFAADPDRFERFSLTAGGLLLDYSKNRITDETLALLLDLAREAGLEGARDAMFA 82 (548)
T ss_pred CCccchHHHHHHHHHHHhcccCCHHHHhccCchHHHhceeecCCEEEEccCCCCCHHHHHHHHHHHHhCChHHHHHHHhC
Confidence 3567889999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHH
Q 007963 122 GEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLF 201 (583)
Q Consensus 122 G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~ 201 (583)
|++||.||+|+|||||||+|.+.++.++|+++.+++++++++|++|+++||+|+|+|+|||+|++||+||||||+|||+|
T Consensus 83 G~~iN~tE~R~vlH~alR~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~i~~g~~~g~~g~~~~~vV~IGIGGS~LGp~~ 162 (548)
T PRK00179 83 GEKINTTEDRAVLHTALRNPSNTPILVDGQDVMPEVHAVLARMKAFAEAVRSGEWKGYTGKAITDVVNIGIGGSDLGPVM 162 (548)
T ss_pred CCCCCCCCCcchhhHHhhCCcCCccccCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCccCeEEEECCCcchHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCcc-ccCC
Q 007963 202 VHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPS-AVAK 280 (583)
Q Consensus 202 ~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~-~~~~ 280 (583)
+++||.++. ..++++||++|+||.++.++++.++|++|||||+||||+|.||++|++.+++||.+++|++ ...+
T Consensus 163 ~~~al~~~~-----~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~ 237 (548)
T PRK00179 163 VTEALRPYA-----DPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAK 237 (548)
T ss_pred HHHHhhhhc-----cCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccc
Confidence 999998742 2346899999999999999999999999999999999999999999999999998776543 4688
Q ss_pred eEEEEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHH
Q 007963 281 HMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLL 360 (583)
Q Consensus 281 h~vaVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~ll 360 (583)
||||||++.+.++++||+++|+|+||||||||||+||+|||+|++++ |+|+|++||+||++||+||+++|+++|||++|
T Consensus 238 h~vaVT~~~~~~~~~g~~~~~~F~~~d~VGGRfSvlSavGL~pa~~~-G~d~~~~lL~GA~~md~~f~~~~~~~N~p~ll 316 (548)
T PRK00179 238 HFVAVSTNAEAVAEFGIDPDNMFGFWDWVGGRYSLWSAIGLSIALAI-GPDNFEELLAGAHAMDEHFRTAPLEKNLPVLL 316 (548)
T ss_pred eEEEEcCCcHHHHHcCCchhcEEECCCCCCCcceecchhhHHHHHHh-CcHHHHHHHHHHHHHHHHHhcCChhhCHHHHH
Confidence 99999999999999999988999999999999999999998888875 99988999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-c
Q 007963 361 GLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-R 439 (583)
Q Consensus 361 All~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~ 439 (583)
|++.+||.+++|+++++++||+++|++||+|+|||+||||||+++++|++++++|+|++||++||+|||||+||+||| +
T Consensus 317 all~~~~~~~~g~~~~vllpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~t~piv~g~~Gt~dQHSf~QllhqG~~ 396 (548)
T PRK00179 317 ALIGVWYRNFFGAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQTGPIIWGEPGTNGQHAFFQLLHQGTK 396 (548)
T ss_pred HHHHHHHHhcCCCCeEEEecchHHHHHHHHHHHHHhhhhcCCccccCCCccccCccceeecCCCCchhHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ccceeEEEecccCCcccccccccCchHHHHhhcccchHHHhCCCCHHHHhh----------------------cCCCCcc
Q 007963 440 VIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQK----------------------ENVAPHL 497 (583)
Q Consensus 440 ~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~----------------------~~~p~~~ 497 (583)
.+|+|||.+.+++++. ..+|+.|++||++|.++++.|++..++.+ .|+|+.+
T Consensus 397 ~~~~~FI~~~~~~~~~------~~~~~~l~~n~~aq~~al~~Gk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gnrPs~~ 470 (548)
T PRK00179 397 LVPADFIAPAQPHNPL------GDHHDLLLANCFAQTEALMFGKTAEEVRAELRAKGLDEAEAEELAPHKVFPGNRPSTT 470 (548)
T ss_pred CeeeEEEEEcCCCCcc------chhhHhhcCCccccHHHHhcCCCHHHHHHHHhhcccchhHHHHhhhcccCCCCCceEE
Confidence 8999999988765443 24789999999999999999999876542 2677754
Q ss_pred hhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCCCCCCCChhHHHHHHHHHHh
Q 007963 498 IPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEA 568 (583)
Q Consensus 498 ~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~~d~st~~li~~~~~~ 568 (583)
+-.+ |+|+|||+|+++|+|||||||||||||+||++|++|+..+.+. ....++|+||++||++|+.+
T Consensus 471 i~l~~l~p~~lG~LialyEh~~~v~g~l~gIN~FDQpGVElGK~la~~il~~~~~~----~~~~~~d~sT~~li~~~~~~ 546 (548)
T PRK00179 471 ILLDRLTPFTLGALIALYEHKVFVQGVIWGINSFDQWGVELGKQLAKRILPELEGD----SEASAHDSSTNGLINRYRAW 546 (548)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhcCC----CCCCCCChHHHHHHHHHHHh
Confidence 4222 9999999999999999999999999999999999999998753 12236999999999999876
Q ss_pred C
Q 007963 569 S 569 (583)
Q Consensus 569 ~ 569 (583)
+
T Consensus 547 ~ 547 (548)
T PRK00179 547 R 547 (548)
T ss_pred c
Confidence 4
No 6
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=100.00 E-value=3.3e-125 Score=1031.36 Aligned_cols=458 Identities=51% Similarity=0.771 Sum_probs=409.7
Q ss_pred ecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHH
Q 007963 89 DYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFS 168 (583)
Q Consensus 89 D~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa 168 (583)
|||||+||++++++|+++|++++|++++++||+|++||.||+|+|||+|||+|.+.++.++|+++.+.++..+++|++|+
T Consensus 1 d~sk~~~~~~~~~~l~~la~~~~l~~~~~~~~~g~~iN~tE~r~vlH~alr~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ 80 (486)
T PF00342_consen 1 DYSKQRIDEETLDLLIELAEEAGLPEKIEAMFSGEKINITENRAVLHTALRAPSGQSLLVDGKDVLGWVDAPLQRMKEFA 80 (486)
T ss_dssp EETTSS--HHHHHHHHHHHHHTTHHHHHHHHHTTHHHBTTTTB--HHHHHTCTTTT-HEETTEESHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcChHHHHHHHhCcchhhccccHhHHHHHHHcCCCCCccCCCchhHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEE
Q 007963 169 ETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVV 248 (583)
Q Consensus 169 ~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iv 248 (583)
++|+++.|++++|++|++||+||||||+|||+|+++||.++.. ..+++||++|+||.++.++++.|+|++|+|||
T Consensus 81 ~~i~~~~~~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~~-----~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iV 155 (486)
T PF00342_consen 81 ERIRSGAWKGRTGKPITDVVVIGIGGSSLGPRALYEALKPYFS-----NPPRLHFLDNVDPADLARLLERLDPETTLFIV 155 (486)
T ss_dssp HHHHTTHSBHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGTT-----SSCEEEEESSSSHHHHHHHHTTSTGGGEEEEE
T ss_pred HHHHHHHHccccCCceeEEEEEecchhhHHHHHHHHHhhhhcc-----cceEEEEeccCChHHHHHHHhcCCCccEEEEE
Confidence 9999999999999999999999999999999999999998642 34799999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHhcC-ccccCCeEEEEcCCchHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhh
Q 007963 249 VSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327 (583)
Q Consensus 249 iSKSGtT~ETl~n~~~~~~~l~~~~g-~~~~~~h~vaVT~~~~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala 327 (583)
+||||+|+||+.|++.+++||.++++ ++.+.+||||||++.+.+.++|++++++|+||+|||||||+||+|| ||+|++
T Consensus 156 iSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVG-lp~ala 234 (486)
T PF00342_consen 156 ISKSGTTIETLANFRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVG-LPLALA 234 (486)
T ss_dssp EESSST-HHHHHHHHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGG-HHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCc-hHHHHH
Confidence 99999999999999999999999987 4568999999999999999999998899999999999999999999 999999
Q ss_pred cCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcC
Q 007963 328 YGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSID 407 (583)
Q Consensus 328 ~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~ 407 (583)
.|+++|++||+||++||+||+++|+++|+|++||++++|+.+++|+++++++||+++|+.|+.|||||+||||||+++.+
T Consensus 235 ~G~~~~~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK~~~~~ 314 (486)
T PF00342_consen 235 GGFIDFEELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGKSVDRD 314 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSESBTTT
T ss_pred cChhhHHHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccchhhccc
Confidence 77755999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccccCchHHHHhhcccchHHHhCCCCHH
Q 007963 408 GVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPE 486 (583)
Q Consensus 408 G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~ 486 (583)
|+++++.|+|++||++||+|||||+||+||| +.+|+|||.+.++.... ..+|+.+++||++|.++|+.||+.+
T Consensus 315 G~~~~~~t~pi~~G~~Gt~dqHS~~Qll~qG~~~~~~~fi~~~~~~~~~------~~~~~~l~~n~~~q~~~L~~Gk~~~ 388 (486)
T PF00342_consen 315 GEPVDYGTGPIVWGGVGTNDQHSFFQLLHQGGRDKPVDFILFVKNPHDD------LDIHDILLANCLAQLDALAFGKTLE 388 (486)
T ss_dssp SSBESSEESEEEEEEETTGGGGTSHHHHHHSSSSCEEEEEEEECCSSSG------CHHHHHHHHHHHHHHHHHHHTBBHH
T ss_pred CceeeecCCccccCCCCCccccccceeecccCceEEEEEEEEccccccc------cccchhhhhhhhHHHHHHHCCCCHH
Confidence 9999999999999999999999999999998 78999999988776533 4578899999999999999999976
Q ss_pred HHhh-----------------cCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHH
Q 007963 487 QLQK-----------------ENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQ 540 (583)
Q Consensus 487 ~~~~-----------------~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~ 540 (583)
++++ .++|..++..+ |+++|||+|+++|+|||||||||||||+||++|++|++.
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~Gn~Ps~~I~l~~l~~~~lG~Lia~yE~~~~v~g~l~~INpFDQpGVElgK~~a~~il~~ 468 (486)
T PF00342_consen 389 ELNKEAFAATAETLAAHKVFPGNRPSTTILLDELDPYSLGALIAFYEHKTFVQGYLWGINPFDQPGVELGKKLAKKILGK 468 (486)
T ss_dssp HHHHHHHHTHHHHHHHGHHBTTT-EEEEEEESESSHHHHHHHHHHHHHHHHHHHHHHTS-TT--GGGHHHHHHHHHHHHH
T ss_pred HHHhhhccccHHHHHHhhhhcCCcceeeeecccCCchHHHHHHHHHHHHHHHhhhhcCcCCCCCccHHHHHHHHHHHHhh
Confidence 6432 24776654322 999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCCCChhHHHHH
Q 007963 541 LHASRMKREPIEGFNFSTTTLL 562 (583)
Q Consensus 541 l~~~~~~~~~~~~~d~st~~li 562 (583)
++.. +...+||+||++||
T Consensus 469 ~~~~----~~~~~~d~st~~l~ 486 (486)
T PF00342_consen 469 LEGE----EQVSGHDSSTAALI 486 (486)
T ss_dssp HSSS----STCCSSHHHHHHHH
T ss_pred ccCC----CCCCCCChhhhhhC
Confidence 9753 23457999999997
No 7
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.1e-113 Score=939.99 Aligned_cols=433 Identities=31% Similarity=0.441 Sum_probs=384.5
Q ss_pred ccccCCeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHH
Q 007963 80 MVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWK 159 (583)
Q Consensus 80 ~~~~~gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~ 159 (583)
..+..||++|||||++|+++++.|.++++++ .+++++|++|+++|.||+|+|+|+|||+|...+ |.++.+++++
T Consensus 16 ~~~~~g~~lD~sr~~~~~~~l~~l~~~a~~a--~~~~~~l~~G~~~N~tE~R~v~H~~LR~p~~~~----~~~~~~~i~~ 89 (528)
T PRK14096 16 YHPELGLWLDISRMNFDDAFLESLEPKFQKA--FAAMAALEAGAIANPDEGRMVGHYWLRNPELAP----TPEIRAEITE 89 (528)
T ss_pred ecCCCCEEEEccCCCCCHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCchhhhHhhcCCccCC----CcchhHHHHH
Confidence 3456789999999999999999999999875 799999999999999999999999999987643 7889999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccC
Q 007963 160 VLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL 239 (583)
Q Consensus 160 ~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l 239 (583)
++++|++|+++||+|+|+|++|++|++||+||||||+|||+|+++||.++. .++++||+||+||+.+.++++.|
T Consensus 90 ~l~~i~~fa~~i~~G~~~~~~g~~~~~vV~IGIGGS~LGp~~v~~AL~~~~------~~~~~~f~dN~Dp~~~~~~l~~l 163 (528)
T PRK14096 90 TLAQIEAFAAKVHSGTIKPPNGEKFTDVLWIGIGGSALGPQFVAEALQPNS------DGLNIHFIDNTDPDGIDRVLAEL 163 (528)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCCCCeEEEECCCcchHHHHHHHHHHhhcC------CCCcEEEEcCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998642 34689999999999999999999
Q ss_pred C--CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHHHcCCCCC--CeeecccCCCCcchh
Q 007963 240 N--PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPN--NAFAFWDWVGGRYSV 315 (583)
Q Consensus 240 ~--~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~~~Gi~~~--~~f~~~~~VGGRfSv 315 (583)
+ |++|||||+||||+|.||++|++.+++|++++ |. .+.+|+||||++...++++++++. ++|+||||||||||+
T Consensus 164 ~~~~~~TLviViSKSGtT~ET~~n~~~~~~~l~~~-G~-~~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~VGGRfSv 241 (528)
T PRK14096 164 GDRLATTLVVVISKSGGTPETRNGMLEAKAAYEAA-GL-DFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWVGGRTSE 241 (528)
T ss_pred cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhh-cc-cccceEEEEECCCcHHhhhccccCceeEeeCCCCCCCcccc
Confidence 8 99999999999999999999999999999765 33 367899999998877777777643 699999999999999
Q ss_pred hhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHH
Q 007963 316 CSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQV 395 (583)
Q Consensus 316 ~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL 395 (583)
||+|||||+|+ +|+| |++||+||++||+||+++|+++|||++||++.+|+.+++|++.++++||+++|+.|+.|+|||
T Consensus 242 ~SaVGLlP~al-~G~d-i~~lL~GA~~md~~~~~~~~~~N~~~llal~~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL 319 (528)
T PRK14096 242 TSAVGLLPAAL-QGID-IRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKDMVVLPYKDRLLLFSRYLQQL 319 (528)
T ss_pred cchhhHHHHHH-hCcC-HHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHHHHHHH
Confidence 99999999999 4999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCccccccc-ccCchHHHHhhcc
Q 007963 396 SMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGE-VVSNHDELMSNFF 473 (583)
Q Consensus 396 ~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~-~~~~~~~l~~n~~ 473 (583)
+||||||+++++|++++ +|+++||++||+|||||+|+|||| +.+|+|||.+.++.++..++.. ..+.++.|.
T Consensus 320 ~mES~GK~~~~~G~~v~--~G~~v~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~~~~~~g~~~~~~l~---- 393 (528)
T PRK14096 320 VMESLGKELDLDGNVVH--QGIAVYGNKGSTDQHAYVQQLRDGVDNFFVTFIEVLEDRQGSSIEVEPGVTSGDYLS---- 393 (528)
T ss_pred hhhccCCccccCCcCcc--ccCeEecCCCCCchHHHHHHHHccCCCeeEEEEeEcCCCCccchhhccCCCHHHHHH----
Confidence 99999999999999884 899999999999999999999999 6899999998876432211100 012233332
Q ss_pred cchHHHhCCCCHHHHhhcCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHH
Q 007963 474 AQPDALAVGKTPEQLQKENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 539 (583)
Q Consensus 474 aq~~aL~~G~~~~~~~~~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~ 539 (583)
+++.| |...+...|+|+.++..+ |+++|||+|+++|+|||||||||||||+||++|++|++
T Consensus 394 ----~~~~g-t~~al~~g~rPs~~I~l~~l~p~~lGaLialyE~~v~~~g~l~~IN~FDQpGVE~GK~~a~~il~ 463 (528)
T PRK14096 394 ----GFLQG-TRQALYENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAYHQPGVEAGKKAAAAILD 463 (528)
T ss_pred ----HHHhC-cHhhhhcCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHH
Confidence 22334 345566778998655332 99999999999999999999999999999999999986
No 8
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-106 Score=865.65 Aligned_cols=433 Identities=47% Similarity=0.736 Sum_probs=401.7
Q ss_pred CeEEecccCCCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHHHHH
Q 007963 85 GILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKI 164 (583)
Q Consensus 85 gl~lD~Skq~it~~~l~~L~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i 164 (583)
+|++||||++++++++..|.++++++++.+++++||.|+++| ||+|+|||+++| .+++...+++|
T Consensus 3 ~l~~d~sk~~~~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~n-~e~r~~lh~~~r--------------~~e~~~vl~~~ 67 (446)
T COG0166 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALR--------------MPEVDEVLKRM 67 (446)
T ss_pred cEEEehhhccCchHHHHHHHHHHHHHhHHHHHHHhhcCCCCC-cccchhhhhhhh--------------hHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 999999999999 45678899999
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCce
Q 007963 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 244 (583)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~T 244 (583)
++|++++|+| +|++||+||||||+|||+|++++|.++. ..++++||++|+||+++.++++.++|++|
T Consensus 68 ~~f~~~~~~g--------~~~~IV~IGIGGS~LG~~~~~~aL~~~~-----~~~~~~~Fv~nid~~~~~~~l~~i~~~~t 134 (446)
T COG0166 68 KAFADDVRSG--------KITDIVNIGIGGSDLGPRAVTEALRPYA-----PNGPRVHFVSNVDPTYLAEVLKKLDPETT 134 (446)
T ss_pred HHHHhhcccC--------ccceEEEeCCchhHHHHHHHHHHhhhhc-----cCCCceEEecCCCchhhhHHHhccCcccE
Confidence 9999999997 5999999999999999999999999875 24589999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHH-HcCCCCCCeeecccCCCCcchhhhchhhhH
Q 007963 245 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVE-KFGIDPNNAFAFWDWVGGRYSVCSAVGVLP 323 (583)
Q Consensus 245 L~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~-~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP 323 (583)
+|+|+||||||+||+.|++.+++|+.++ .+...+|+|+++++..+.. .+++...++|.||||||||||+||+||++|
T Consensus 135 l~iviSKSGtT~Et~~n~~~~r~~~~~~--~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~SaVG~l~ 212 (446)
T COG0166 135 LFIVISKSGTTLETLTNFRLARKWLEKK--EEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLSAVGLLP 212 (446)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHhh--hhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCCccchhHHHHHHH
Confidence 9999999999999999999999999887 5557889999999876544 888887789999999999999999999999
Q ss_pred HHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCc
Q 007963 324 LSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKG 403 (583)
Q Consensus 324 ~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~ 403 (583)
+++. |.| |+++|+||++||+||+++++++|+|+++|++++|+.+++|+.+++++||+++|+.|++|+|||+|||+||+
T Consensus 213 ~a~~-~~~-~~~lL~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~ 290 (446)
T COG0166 213 LALG-GID-FKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKS 290 (446)
T ss_pred HHHh-ccc-HHHHHHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCC
Confidence 9986 888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccccCchHHHHhhcccchHHHhCC
Q 007963 404 VSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVG 482 (583)
Q Consensus 404 ~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G 482 (583)
+..+|.++.+.|++++||.+|+++||+|||++||| +.+|++||.+.+.+.+. ..+|+.|++|+++|..++++|
T Consensus 291 ~~~~~~~~~~~t~~~~~g~~g~~gqh~ffql~~qgt~~~p~~~I~~~~~~~~~------~~~~~~L~~~~~aq~~~~a~~ 364 (446)
T COG0166 291 VKGIGPEVNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKPADFIEIEESIEDL------DGHHDKLLSNFLAQTEALAFG 364 (446)
T ss_pred ccCcCCccccCCCceeeccccccCceeEEEEEEecccccchhhccccccccCc------cchHHHHHHhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 57899999998876644 236899999999999999999
Q ss_pred CCHHHHhhcCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHHHHhhcccCCCCCCC
Q 007963 483 KTPEQLQKENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEG 553 (583)
Q Consensus 483 ~~~~~~~~~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~~l~~~~~~~~~~~~ 553 (583)
++..+...+++|+.++..+ |+++|||+|+++|++||||||||||||+||++|++|+..+.+. .....
T Consensus 365 ~t~~~~~~gn~P~~~i~~~~l~p~~~G~l~a~yE~~~~~~G~l~~in~FdQ~GVElgK~~~~~ll~~~~~~----~~~~~ 440 (446)
T COG0166 365 KTLLAHTAGNRPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLGKLGGE----LSAEL 440 (446)
T ss_pred hhhhHhhcCCCCceEEEecCCChhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhhccCC----ccccc
Confidence 9999999999998765333 9999999999999999999999999999999999999988753 23345
Q ss_pred CChhHH
Q 007963 554 FNFSTT 559 (583)
Q Consensus 554 ~d~st~ 559 (583)
+|+||+
T Consensus 441 ~~~~~~ 446 (446)
T COG0166 441 HDSSTE 446 (446)
T ss_pred cccccC
Confidence 788873
No 9
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5.1e-87 Score=724.12 Aligned_cols=398 Identities=25% Similarity=0.341 Sum_probs=316.7
Q ss_pred CCeEEeccc--CCCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHHHHH
Q 007963 84 DGILLDYSR--QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVL 161 (583)
Q Consensus 84 ~gl~lD~Sk--q~it~~~l~~L~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l 161 (583)
.+|.+|+|+ ..++++.++.+.+..++ ..+++-++. . .++.++= +++.|+.. . .+.+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~-~---~~~~~lG-~~~lp~~~---------~---~~~~ 59 (448)
T PRK14097 2 THIKFDYSKALSFVGEHELEYLQPQVKA-----AHQTLHNGT-G---AGNDFLG-WLDLPENY---------D---KEEF 59 (448)
T ss_pred CeEEEehhhhhccCCHHHHHHHHHHHHH-----HHHHHHhcc-C---CCCcccC-cccChhhc---------C---HHHH
Confidence 478999887 57999988877776654 233444443 1 1221221 35555421 1 3468
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhH---HhhhCCceEEEe-ccCChHhHHHHhc
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEA---IECARGRQLRFL-ANVDPIDVAKSIT 237 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~---~~~~~~~~i~fl-~nvDp~~~~~~l~ 237 (583)
++|++|++++|++ +++||+||||||+|||+|+++||.+.... .....+++++|+ +|+||.++.++++
T Consensus 60 ~~i~~~~~~~~~~---------~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~ 130 (448)
T PRK14097 60 ARIKKAAEKIKSD---------SDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLE 130 (448)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHh
Confidence 8999999999985 59999999999999999999999752110 000124688877 6799999999999
Q ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCch-----HHHHcCCCCCCeeecccCCCCc
Q 007963 238 GLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLT-----LVEKFGIDPNNAFAFWDWVGGR 312 (583)
Q Consensus 238 ~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~-----~a~~~Gi~~~~~f~~~~~VGGR 312 (583)
.+++++|+||||||||+|+||++|++.+++||++++|.+...+|+|+||++.+ .|++.|++ +|+||+|||||
T Consensus 131 ~l~~~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~---~f~ip~~VGGR 207 (448)
T PRK14097 131 YLKDKDFSINVISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYE---TFVIPDDVGGR 207 (448)
T ss_pred hCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcC---EEeCCCCCCcc
Confidence 99999999999999999999999999999999776665556788999998653 67888887 99999999999
Q ss_pred chhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHH
Q 007963 313 YSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHI 392 (583)
Q Consensus 313 fSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wl 392 (583)
|||||+|||||+|++ |+| |++||+||++||+||+++++++|||+++|++++|+. ..|+++++++||+++|+.|+.||
T Consensus 208 fSvlSavGLlP~al~-G~d-i~~lL~GA~~m~~~~~~~~~~~N~a~l~A~~~~~~~-~~g~~~~vl~~Y~~~L~~f~~w~ 284 (448)
T PRK14097 208 FSVLTAVGLLPIAVA-GID-IDALMKGAADARKDYSSSDLSENPAYQYAAVRNILY-RKGYTTEILVNYEPSLQYFSEWW 284 (448)
T ss_pred cccccHhHHHHHHHh-hhh-HHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHH-hCCCCeEEEEEChHHHHHHHHHH
Confidence 999999999999998 999 899999999999999999999999999999988887 78999999999999999999999
Q ss_pred HHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccccCchHHHHhh
Q 007963 393 QQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSN 471 (583)
Q Consensus 393 qQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n 471 (583)
|||||||+||+ |++ .++.+++||+|||||+|++||| +.++++||.+.++..+..+++. ..+++.+ |
T Consensus 285 ~QL~aESlGK~----g~G------~~P~~~igt~dqHS~~Ql~~~G~~~~~~t~i~~~~~~~~~~i~~~-~~~~~~l--~ 351 (448)
T PRK14097 285 KQLFGESEGKD----QKG------IFPASANFSTDLHSLGQYIQEGRRNLFETVIKVEKPRKDLTIPED-EEDLDGL--N 351 (448)
T ss_pred HHHhccccccC----CCC------cccccCccCCCcchhhhHHHhCCCcEEEEEEeecCCCCcCCCCcc-cccchhh--h
Confidence 99999999996 443 2444678999999999999999 5667777776655443323321 1223333 3
Q ss_pred cccchHHHhCCCCHHH------------HhhcCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHh
Q 007963 472 FFAQPDALAVGKTPEQ------------LQKENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELG 530 (583)
Q Consensus 472 ~~aq~~aL~~G~~~~~------------~~~~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~g 530 (583)
++ .|++..+ +...|+|+..+..+ |+++|||+|+++|+|||||||||||||+|
T Consensus 352 ~l-------~g~~~~~l~~~~~~at~~al~~~~~P~~~I~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFDQpGVE~g 424 (448)
T PRK14097 352 YL-------AGKTVDFVNKKAFEGTLLAHTDGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFDQPGVEAY 424 (448)
T ss_pred hh-------cCCCHHHHHHhhhhhhHhhHhhCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCccHHHH
Confidence 33 3444443 34568888654322 99999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007963 531 KSLATQVR 538 (583)
Q Consensus 531 K~la~~i~ 538 (583)
|+++++++
T Consensus 425 K~~~~~~l 432 (448)
T PRK14097 425 KKNMFALL 432 (448)
T ss_pred HHHHHHHh
Confidence 99999976
No 10
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5e-86 Score=714.29 Aligned_cols=389 Identities=29% Similarity=0.399 Sum_probs=309.2
Q ss_pred eEEeccc-------CCCCHHHHHHHHHHHHHcChHHHHHHHhcCCCCCCCCCcceeeeeccCCCCcccccCCCcchHHHH
Q 007963 86 ILLDYSR-------QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVW 158 (583)
Q Consensus 86 l~lD~Sk-------q~it~~~l~~L~~la~~~~l~~~~~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~~~ 158 (583)
+.+|||+ ..++++.++.+.+.+++ ..+.|.++.. ++. += ++..|... . .
T Consensus 3 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~--lg-~~~lp~~~---------~---~ 58 (446)
T PRK00973 3 LKFDFSNVFEPNIGGGISIEDIESVKEKITS-----AVENLMEKEP----NGE--LG-FLELPYDR---------S---L 58 (446)
T ss_pred eEEehhhccccccccCCCHHHHHHHHHHHHH-----HHHHHHhcCC----CCc--CC-cccCcccc---------C---H
Confidence 6789887 45888888887777754 3455554421 222 11 24444421 0 1
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHh---hhCCceEEEeccCChHhHHHH
Q 007963 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIE---CARGRQLRFLANVDPIDVAKS 235 (583)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~---~~~~~~i~fl~nvDp~~~~~~ 235 (583)
++++++++ .+| .+++||+||||||+|||+|++++|.+...... ...+++++|++|+||..+.++
T Consensus 59 ~~~~~~~~---~~~----------~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~ 125 (446)
T PRK00973 59 DSYEELKE---WSK----------NFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASI 125 (446)
T ss_pred HHHHHHHH---Hhh----------cCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHH
Confidence 13444444 333 17999999999999999999999986421000 012357999999999999999
Q ss_pred hccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc-----hHHHHcCCCCCCeeecccCCC
Q 007963 236 ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-----TLVEKFGIDPNNAFAFWDWVG 310 (583)
Q Consensus 236 l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-----~~a~~~Gi~~~~~f~~~~~VG 310 (583)
++.+++++|+||||||||||+||++||+.+++|| ++.| +...+|+||||++. +.|+++||+ +|++|+|||
T Consensus 126 l~~l~~~~Tl~iviSKSGtT~ET~~~f~~~~~~l-~~~g-~~~~~~~vaiTd~~~g~L~~~A~~~g~~---~f~ip~~VG 200 (446)
T PRK00973 126 LDVIDLEKTLFNVISKSGNTAETLANYLIIRGIL-EKLG-LDPKKHLVFTTDPEKGKLKKIAEKEGYR---TLEIPENVG 200 (446)
T ss_pred HHhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHH-HhcC-ccccceEEEEcCCCccchHHHHHHcCCc---EEeeCCCCC
Confidence 9999999999999999999999999999999999 5566 34677999999952 589999998 999999999
Q ss_pred CcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHH
Q 007963 311 GRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAP 390 (583)
Q Consensus 311 GRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~ 390 (583)
|||||||+|||+|++++ |+| |++||+||++||+||+++++++|||+++|++.+|+.+ .|+++++++||+++|+.|++
T Consensus 201 GRfSvlSaVGL~p~a~~-G~d-i~~lL~GA~~m~~~~~~~~~~~N~a~~~a~~~~~~~~-~g~~~~vl~~Y~~~L~~f~~ 277 (446)
T PRK00973 201 GRFSVLTPVGLAPAAAL-GID-IEELLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLKYFGD 277 (446)
T ss_pred cceeeecHHHHHHHHHh-Ccc-HHHHHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHh-CCCCeEEEEEcHHHHHHHHH
Confidence 99999999999999996 999 8999999999999999999999999999999888765 89999999999999999999
Q ss_pred HHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccccCchHHHH
Q 007963 391 HIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELM 469 (583)
Q Consensus 391 wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~ 469 (583)
|||||||||+||+ | +|++|||++||+|||||+||+||| +.++++||.+.++..+..+++.. .+.+.+
T Consensus 278 w~~QL~~ES~GK~----~------~G~~P~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~v~~~~~~~~i~~~~-~~~~~l- 345 (446)
T PRK00973 278 WYRQLWAESLGKK----G------VGQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVEKYRRDVEIPYEY-EDIEEL- 345 (446)
T ss_pred HHHHHHHHhcCCC----C------CCCceecCCCCccHHHHHHHHHhCCCCeEEEEEEECCCCCccCCCcch-hhhhHH-
Confidence 9999999999996 2 477899999999999999999999 57899999977654433222210 111111
Q ss_pred hhcccchHHHhCCCCHHH------------HhhcCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchH
Q 007963 470 SNFFAQPDALAVGKTPEQ------------LQKENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVE 528 (583)
Q Consensus 470 ~n~~aq~~aL~~G~~~~~------------~~~~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE 528 (583)
|++ .|+|..+ +...|+|+..+..+ |+++|||+|+++|++||||||||||||
T Consensus 346 -~~l-------~g~t~~~l~~~~~~at~~al~~~~~P~~~I~l~~l~~~~lG~L~~~~E~~t~~~G~llgINpFDQPGVE 417 (446)
T PRK00973 346 -SYL-------GGHKLSELINSEQKGTEIALTENGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPGVE 417 (446)
T ss_pred -hhh-------cCCCHHHHHHHHhhhhHHHHhhCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHH
Confidence 222 3444443 33458998654322 999999999999999999999999999
Q ss_pred HhHHHHHHHHH
Q 007963 529 LGKSLATQVRK 539 (583)
Q Consensus 529 ~gK~la~~i~~ 539 (583)
+||++|++++.
T Consensus 418 ~gK~~~~~~l~ 428 (446)
T PRK00973 418 LGKKITYALLG 428 (446)
T ss_pred HHHHHHHHHhc
Confidence 99999999863
No 11
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=4.3e-82 Score=679.43 Aligned_cols=329 Identities=31% Similarity=0.432 Sum_probs=268.4
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
+++||+||||||+|||+++++++.++. ..+++++|++|+||.++.++++.+++++|+|||+||||+|.||+++++
T Consensus 58 ~~~VV~iGIGGS~LG~~~l~~al~~~~-----~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~ 132 (410)
T PRK03868 58 IKNIVVIGIGGSSLGVKAIYSFLKNEK-----NNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFK 132 (410)
T ss_pred CCEEEEEecChHHHHHHHHHHHHHhhc-----cCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999999997532 124689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc----hHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHHH
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 339 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~----~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~G 339 (583)
.+++|+.+. + . ..+|+|+||++. +.|++.|++ +|++|+||||||||||+|||||+|++ |+| +++||+|
T Consensus 133 ~~~~~~~~~-~-~-~~~~~v~vTd~~s~L~~~a~~~g~~---~f~ip~~VGGRfSvlSavGLlP~a~~-G~d-i~~lL~G 204 (410)
T PRK03868 133 YLLSHFKLD-Q-E-LKKNFLFITDPDSKLEQFAKENNIK---CFNIPKNVGGRFSVLSAVGIVPLALC-GYD-IKALLEG 204 (410)
T ss_pred HHHHHhccc-c-c-cccEEEEEecCCchHHHhHHhcCCc---EEecCCCCCcceeecchhhHHHHHHh-Ccc-HHHHHHH
Confidence 999988432 2 2 567999999765 468888887 99999999999999999999999996 999 6999999
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccc
Q 007963 340 AWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEID 419 (583)
Q Consensus 340 A~~md~~f~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~ 419 (583)
|++||+||.+++++ .+++++.+|+.+..|+++++++||+++|+.|+.|||||||||+||++ |... .+|++|
T Consensus 205 A~~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Y~~~L~~f~~w~~QL~~ES~GK~~---~~~~--~~G~~p 275 (410)
T PRK03868 205 AKACKDSFFEQKED----HILKKAYFYATHKNAYNINVLFSYSDALKGFNDWYVQLWGESLGKKQ---GYKT--RVGLTP 275 (410)
T ss_pred HHHHHHHhhcCCHH----HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHhhhhccccc---cCCC--ceeeEE
Confidence 99999999887654 24555567888889999999999999999999999999999999984 3322 589999
Q ss_pred cCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccc---cCchHHH-----HhhcccchHHHhCCCCHHHHhh
Q 007963 420 FGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEV---VSNHDEL-----MSNFFAQPDALAVGKTPEQLQK 490 (583)
Q Consensus 420 ~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~---~~~~~~l-----~~n~~aq~~aL~~G~~~~~~~~ 490 (583)
||++||+|||||+||+||| +.++++||.+.+++.+..++... .++.+-+ -....+|.+| +.+.+..
T Consensus 276 ~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~~a~~~a-----t~~al~~ 350 (410)
T PRK03868 276 IGLIGSRDQHSFLQLIMEGPRDKTVTFIKIKDFQNAPKIPNISLKGLESLDFVNGVSFNELINAQCDA-----TMEALIA 350 (410)
T ss_pred eccCCCCchhHHHHHHhcCCcCCCeEEEEEcCcCCCcCccccccccccchhhhcCCCHHHHHHHHHHH-----HHHHHHh
Confidence 9999999999999999999 57899999977653332222110 0111001 0000011111 2233445
Q ss_pred cCCCCcchhHh---------HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHHHHH
Q 007963 491 ENVAPHLIPHK---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 539 (583)
Q Consensus 491 ~~~p~~~~~~~---------LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~i~~ 539 (583)
+|+|+..+..+ |+++|||+|+++|+|||||||||||||+||++|++++.
T Consensus 351 ~~~P~~~i~l~~l~~~~lG~L~~~yE~~t~~~g~l~~INpFDQpGVE~gK~~~~~~l~ 408 (410)
T PRK03868 351 EDIPVDVITLEKLDEFSIGYLIYYYELLTSAVGKMLGINTYDQPGVEVGKRILKEKLQ 408 (410)
T ss_pred CCcCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHHh
Confidence 68998654322 99999999999999999999999999999999999763
No 12
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=8.6e-62 Score=559.07 Aligned_cols=329 Identities=26% Similarity=0.355 Sum_probs=260.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChH
Q 007963 151 KNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI 230 (583)
Q Consensus 151 ~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~ 230 (583)
-++..+++..+++|++|+++||++ +|++||+||||||+|||+++++++.... ..++++|++|+||.
T Consensus 430 l~~~~~~~~~l~~i~~fa~~Ir~~--------~~d~VVviGIGGS~LG~~~l~~~l~~~~------~~p~l~~ldn~DP~ 495 (948)
T PRK09533 430 LDIVEDELAHLAEYEAFAEEVRAE--------GFTDAVVLGMGGSSLGPEVLAETFGQRD------GFPKLHVLDSTDPA 495 (948)
T ss_pred hhccHHHHHHHHHHHHHHHHHhcC--------CCCEEEEEccChhHHHHHHHHHHHHhcC------CCceEEEEeCCChH
Confidence 345667888999999999999975 4899999999999999999999987431 23688999999999
Q ss_pred hHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc----hHHHHcCCCCCCeeecc
Q 007963 231 DVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL----TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 231 ~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~----~~a~~~Gi~~~~~f~~~ 306 (583)
.+.++++.+++++|+|||+||||+|.||+++++.+++|+.+++|. ..++|+|+||++. +.|+++|++ ++|.+|
T Consensus 496 ~v~~~l~~~~~e~TLvIViSKSGtT~ET~sa~~~~~~~l~~~~g~-~~~~~~VaVTdpgs~L~~~A~~~G~~--~vf~~~ 572 (948)
T PRK09533 496 QVRALEAAVDLARTLFIVSSKSGGTLEPNIFKDYFFARVKEVLGA-KAGRHFVAVTDPGSSLEKVAKEDGFR--KIFHGD 572 (948)
T ss_pred HHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHhhhhccc-ccCCeEEEEeCCCChHHHHHHHcCCe--eEecCC
Confidence 999999999999999999999999999999999999999776664 4678999999843 567889996 699999
Q ss_pred cCCCCcchhhhchhhhHHHhhcCchHHHHHHHHHHHHHHHhh-CCCCCCCHHHHHHH-HHHHHHhcCCCCeEEEeechhh
Q 007963 307 DWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFI-SAPYEKNIPVLLGL-LSIWNVSFLGHPARAILPYSQA 384 (583)
Q Consensus 307 ~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~GA~~md~~f~-~~~~~~N~p~llAl-l~~~~~~~~g~~~~~ilpY~~~ 384 (583)
+|||||||+||+|||+|++++ |+| +++||+||++|+++|. ..|..+|+|+++|+ +.+|+. .|+. .++++|+++
T Consensus 573 p~VGGRYSVLSavGLvPaa~~-GiD-i~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~--~Gr~-~V~i~Ys~~ 647 (948)
T PRK09533 573 PDIGGRYSVLSPFGLVPAAAA-GID-VRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAAT--QGRD-KVTIVASPA 647 (948)
T ss_pred CCCCcchHHhhhhhhHHHHHh-Cch-HHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHh--CCCc-EEEEEChHH
Confidence 999999999999999999996 999 7999999999999775 45888999999987 456643 4755 456779999
Q ss_pred HHhhHHHHHHHhhhhCCCccCcCCCc-ccccccccccCCCCCCCCcccceeeeeccccceeEEEecccCCcccccccccC
Q 007963 385 LEKFAPHIQQVSMESNGKGVSIDGVP-LPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVS 463 (583)
Q Consensus 385 L~~~~~wlqQL~mES~GK~~~~~G~~-v~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~~dfi~~~~~~~~~~~~~~~~~ 463 (583)
|+.|+.|+|||+|||+||. |+. +|... ..+|.+++++.+- + ||.+.... .
T Consensus 648 L~~f~~W~~QL~aES~GK~----g~Gl~Pv~~--e~vg~~~~~g~d~----------~---fi~l~~~~----------~ 698 (948)
T PRK09533 648 IADFGAWAEQLIAESTGKE----GKGLIPIDG--EPLGDPAVYGNDR----------V---FVYLRLAG----------E 698 (948)
T ss_pred HHHHHHHHHHHHHhhcCCC----CCCccCCcc--eeecccCCCCCCc----------E---EEEEeccc----------c
Confidence 9999999999999999996 432 33211 2224444332111 1 22221110 0
Q ss_pred chHHHHhhcccchHHHhCCCCHHHHhhcCCCCcchhH----h---HHHHHHHHHHHHHHHhccCCCCccchHHhHHHHHH
Q 007963 464 NHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPH----K---LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQ 536 (583)
Q Consensus 464 ~~~~l~~n~~aq~~aL~~G~~~~~~~~~~~p~~~~~~----~---LialyE~~t~v~g~l~gINpFDQpGVE~gK~la~~ 536 (583)
.+ ..+.++.++| .+.|+|+..+.. . |+++||++|+++|++||||||||||||.||+++++
T Consensus 699 ~~----~~~~at~~AL---------~~~g~P~~~I~l~~~~~LG~lf~l~E~atav~G~LlGINPFDQPgVE~~K~~~~~ 765 (948)
T PRK09533 699 AD----AAQDAALAAL---------EAAGHPVVRIVLDSAEQLGQEFFRWEMATAVAGAVLGINPFDQPDVEASKIKTRE 765 (948)
T ss_pred ch----HHHHHHHHHH---------HhcCCCeEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Confidence 11 1122334444 456777654432 1 89999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 007963 537 VRKQLHA 543 (583)
Q Consensus 537 i~~~l~~ 543 (583)
++..++.
T Consensus 766 ll~~~~~ 772 (948)
T PRK09533 766 LTAAYEK 772 (948)
T ss_pred HHHHHhh
Confidence 9987643
No 13
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=9.4e-45 Score=345.37 Aligned_cols=152 Identities=52% Similarity=0.811 Sum_probs=131.6
Q ss_pred CeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccC
Q 007963 374 PARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQ 452 (583)
Q Consensus 374 ~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~ 452 (583)
++++++||+++|++|++|+|||+||||||+++++|+ +++||+++||++||+|||||+|++||| +.+++|||.+.++.
T Consensus 1 ~~~vl~~Y~~~L~~f~~w~qQL~~ES~GK~~~~~g~--~~~~G~~p~g~~Gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~ 78 (164)
T cd05016 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGE--DYPTGPIPWGAPGTNDQHSFFQLIHQGTKDKPVDFIAVKKPQ 78 (164)
T ss_pred CeEEEEEcHHHHHHHHHHHHHhHhhcCCCccccCCC--cCCceeEEecCCCCCCCCcccchhhcCCCcEEEEEEEECCcC
Confidence 468999999999999999999999999999999998 678999999999999999999999999 57899999988765
Q ss_pred Ccc--cccccccCchHHHHhhcccchHHHhCCCCHHHHhhcCCCCcchhH------h---HHHHHHHHHHHHHHHhccCC
Q 007963 453 QPV--YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPH------K---LLAIYEHRIAVEGFIWGINS 521 (583)
Q Consensus 453 ~~~--~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~~~~p~~~~~~------~---LialyE~~t~v~g~l~gINp 521 (583)
++. ++.+ ...|+.+.++++||.+||+ ..+|+|...+.. . |+++|||+|+++|++|||||
T Consensus 79 ~~~~~~~~~--~~~~~~l~a~~~a~~~aL~--------~~g~~P~~~i~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINp 148 (164)
T cd05016 79 NDVLDYLAG--KTLHDLLLANCLATREALM--------FPGGRPSNTIVLPELTPYTLGALLALYEHKTAVQGALLGINP 148 (164)
T ss_pred cchhhcccC--CcHHHHHHHHHHHHHHHHH--------hcCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 432 1222 3578999999999999984 234777754432 2 99999999999999999999
Q ss_pred CCccchHHhHHHHHHH
Q 007963 522 FDQWGVELGKSLATQV 537 (583)
Q Consensus 522 FDQpGVE~gK~la~~i 537 (583)
|||||||+||++|++|
T Consensus 149 FDQpgVE~gK~~a~~i 164 (164)
T cd05016 149 FDQPGVELGKKLAKKI 164 (164)
T ss_pred CCChhHHHHHHHHhcC
Confidence 9999999999999864
No 14
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=1.1e-33 Score=268.26 Aligned_cols=156 Identities=51% Similarity=0.765 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhcc
Q 007963 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITG 238 (583)
Q Consensus 159 ~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~ 238 (583)
+.+++|+++++++++| +++++||++|||||++|++++.+++.+.. ..+++++|++|+||+.+.+++..
T Consensus 2 ~~~~~i~~~~~~i~~~-------~~~~~iv~~GiGGS~lg~~~~~~~~~~~~-----~~~~~i~~~~~~D~~~~~~~~~~ 69 (158)
T cd05015 2 AELERIKEFAEKVRSG-------KKITDVVVIGIGGSDLGPRAVYEALKPYF-----KGGLRLHFVSNVDPDDLAELLKK 69 (158)
T ss_pred hHHHHHHHHHHHHhcC-------CCCCEEEEEecCccHHHHHHHHHHHHhhc-----cCCceEEEEeCCCHHHHHHHHHh
Confidence 3688999999999985 35899999999999999999999998753 23678999999999999999999
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHHH-cCCCCCCeeecccCCCCcchhhh
Q 007963 239 LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEK-FGIDPNNAFAFWDWVGGRYSVCS 317 (583)
Q Consensus 239 l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~~-~Gi~~~~~f~~~~~VGGRfSv~S 317 (583)
+++++|+||++||||+|.||+.+++.+++||++++++ ...+|+|+||++.+.+.+ .+....++|.+|++||||||++|
T Consensus 70 ~~~~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~-~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S~Ls 148 (158)
T cd05015 70 LDPETTLFIVISKSGTTLETLANARLAREWLEEAGGD-DLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFSVLS 148 (158)
T ss_pred CCcccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccc-cccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHHHHh
Confidence 9999999999999999999999999999999998764 467899999998764444 34444459999999999999999
Q ss_pred chhhhHHHhh
Q 007963 318 AVGVLPLSLQ 327 (583)
Q Consensus 318 avGLlP~Ala 327 (583)
++||||+|++
T Consensus 149 ~~gl~p~a~~ 158 (158)
T cd05015 149 SVGGLPLALA 158 (158)
T ss_pred HHHHHHHHHC
Confidence 9999999974
No 15
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.97 E-value=2.7e-30 Score=272.80 Aligned_cols=278 Identities=15% Similarity=0.096 Sum_probs=204.8
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
++++|+++|+|||+++.+.+...+.. ..+.++.++.... +.....+++++|++|+||+|.||+..+
T Consensus 33 ~~~~I~i~G~GgS~~~a~~~~~~l~~-------~~~~~~~~~~~~~-------~~~~~~~~dlvI~iS~SG~T~e~~~a~ 98 (337)
T PRK08674 33 KIDNIVISGMGGSGIGGDLLRILLFD-------ELKVPVFVNRDYT-------LPAFVDEKTLVIAVSYSGNTEETLSAV 98 (337)
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHh-------cCCCcEEEeCccc-------hhhcCCCCcEEEEEcCCCCCHHHHHHH
Confidence 47899999999999999988877632 1244555543321 223347889999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcCCc---hHHHHcCCCCCCeeecccCCCCcch----------hhhchhhhHHHhhcC
Q 007963 263 RTLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYS----------VCSAVGVLPLSLQYG 329 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~a~~~Gi~~~~~f~~~~~VGGRfS----------v~SavGLlP~Ala~G 329 (583)
+.+++ + +..+|+||++. +.|++.|++ ++.+|..++||+| +++.+|++|++.+
T Consensus 99 ~~a~~----~------ga~vIaIT~~~~L~~~a~~~~~~---~i~ip~~~~~r~s~~~ll~~l~~~l~~~Gl~~~~~~-- 163 (337)
T PRK08674 99 EQALK----R------GAKIIAITSGGKLKEMAKEHGLP---VIIVPGGYQPRAALGYLFTPLLKILEKLGLIPDKSA-- 163 (337)
T ss_pred HHHHH----C------CCeEEEECCCchHHHHHHhcCCe---EEEeCCCCcchhhHHHHHHHHHHHHHHcCCCccchh--
Confidence 98886 2 24799999865 456666887 9999999999999 9999999998753
Q ss_pred chHHHHHHHHHHHHHHHhhCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCCCccCcCC
Q 007963 330 FSVVEKFLKGAWSIDQHFISA-PYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDG 408 (583)
Q Consensus 330 ~d~~~~lL~GA~~md~~f~~~-~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G 408 (583)
| ++++++|+.++.+.+... +..+|++..+|.- .+....++++ +..+..++.||+|+|+||.|-
T Consensus 164 -d-~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~-------~~~~~pv~~g-s~~~~~~a~~~~~~~~Ena~~------ 227 (337)
T PRK08674 164 -E-VLETKIVLSELAEGLKEKVPTLKNLAKRLAGK-------LYGRIPVIYG-SGLTLAVAYRWKTQINENAKY------ 227 (337)
T ss_pred -h-HHHHHHHHHHHHHhhCcCCCcccCHHHHHHHH-------HhCCCCEEEe-CcccHHHHHHHHHHHHHhcCC------
Confidence 6 899999999999988653 4568887765541 1223666767 899999999999999999952
Q ss_pred CcccccccccccCCCCCCCCcccceeeeec-cccceeEEEecccCCcccccccccCchHHHHhhcccchHHHhCCCCHHH
Q 007963 409 VPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQ 487 (583)
Q Consensus 409 ~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG-~~~~~dfi~~~~~~~~~~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~ 487 (583)
.++.+.++.+||+..|++.+| +..+.-++...++. + |+.+- ++.++ +.+.
T Consensus 228 ---------~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~----~~~~~-----t~~~ 278 (337)
T PRK08674 228 ---------PAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDS----------E-HPRIK----KRVEI-----TIDI 278 (337)
T ss_pred ---------ccccccCCcccccceeeccCchhhccceEEEEEcCC----------c-cHHHH----HHHHH-----HHHH
Confidence 123467899999999999999 44433333332221 1 22210 11111 3344
Q ss_pred HhhcCCCCcchhH----------hHHHHHHHHHHHHHHHhccCCCCccchHHhHHHH
Q 007963 488 LQKENVAPHLIPH----------KLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 534 (583)
Q Consensus 488 ~~~~~~p~~~~~~----------~LialyE~~t~v~g~l~gINpFDQpGVE~gK~la 534 (583)
+...++|...+.. .|+++++.++++.|.++||||||||+||.+|+.+
T Consensus 279 ~~~~~~~~~~i~~~g~~~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~ie~~K~~~ 335 (337)
T PRK08674 279 LTEAVINVIEIYPEGNSPLARIFSLIYLGDFASLYLAELRGVDPTPVPIIDYLKRRL 335 (337)
T ss_pred HHhcCCCeEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHh
Confidence 4455666543311 1899999999999999999999999999999865
No 16
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=99.91 E-value=1.1e-24 Score=198.86 Aligned_cols=119 Identities=24% Similarity=0.230 Sum_probs=83.0
Q ss_pred EEeechhhHHhhHHHHHHHhhhhCCCccCcCCCcccccccccccCCCCCCCCcccceeeeeccccc-eeEEEecccCCcc
Q 007963 377 AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIP-CDFIGVVKSQQPV 455 (583)
Q Consensus 377 ~ilpY~~~L~~~~~wlqQL~mES~GK~~~~~G~~v~~~tg~~~~g~~Gt~dqHS~~Qll~qG~~~~-~dfi~~~~~~~~~ 455 (583)
+.++|+++|+.|++|++|||+||+|| +|+.+ +|. .|||+.| +..+ -|.+.+
T Consensus 3 ~~~~y~~~l~~f~~W~~QL~AES~GK----~G~Gl------~Pv------~~hS~~q-----p~~~~~d~~~i------- 54 (129)
T cd05798 3 VTIIASPGIASLGAWLEQLIAESTGK----EGKGI------IPV------DGEPLGD-----PAVYGDDRVFV------- 54 (129)
T ss_pred EEEecchhHHhHHHHHHHHHHHhcCC----CCcee------eec------CCCCCCC-----CCCCCCCeEEE-------
Confidence 56789999999999999999999999 46533 222 2999998 2221 221100
Q ss_pred cccccccCchHHHHhhcccchHHHhCCCCHHHHhhcCCCCcchhH----h---HHHHHHHHHHHHHHHhccCCCCccchH
Q 007963 456 YLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPH----K---LLAIYEHRIAVEGFIWGINSFDQWGVE 528 (583)
Q Consensus 456 ~~~~~~~~~~~~l~~n~~aq~~aL~~G~~~~~~~~~~~p~~~~~~----~---LialyE~~t~v~g~l~gINpFDQpGVE 528 (583)
++ +-++.+-..+.+ |...+.++|+|+..+.. . |+++||++|+++|++||||||||||||
T Consensus 55 ~L-----~~~~~~~~~~~a---------t~~AL~~~g~P~~~i~~~~~~~lG~l~~~~e~ata~~g~llgINpFDQPgVE 120 (129)
T cd05798 55 YL-----RLAGEADADQEE---------ALLALEAAGHPVIRIDLDDAYDLGQEFFRWEMATAVAGAVLGINPFDQPDVE 120 (129)
T ss_pred EE-----echhhhHHHHHH---------HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCccHH
Confidence 01 001111111111 55566778898776432 2 899999999999999999999999999
Q ss_pred HhHHHHHHH
Q 007963 529 LGKSLATQV 537 (583)
Q Consensus 529 ~gK~la~~i 537 (583)
+||++++++
T Consensus 121 ~~K~~~~~~ 129 (129)
T cd05798 121 ASKIETRRL 129 (129)
T ss_pred HHHHHHhcC
Confidence 999999853
No 17
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.53 E-value=2.5e-12 Score=134.71 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
+++|+++|+|||.++.+.+...+.... .+.+++++.+.. +.....+++++|++|+||+|.||+..++
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l~~~~------~~~~v~~~~d~~-------l~~~~~~~dlvI~iS~SG~t~e~~~a~~ 87 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILLLEKS------FQGPVFVVKDYR-------LPRFVDGKTLLIAVSYSGNTEETLSAVE 87 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHhC------CCccEEEEcCcc-------ccccCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999999888776421 024555554332 2333478899999999999999999988
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc---hHHHHcCCCCCCeeecccCCCCcchh---hhchhhhHHHhhcCchHHHHHH
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSV---CSAVGVLPLSLQYGFSVVEKFL 337 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~---~~a~~~Gi~~~~~f~~~~~VGGRfSv---~SavGLlP~Ala~G~d~~~~lL 337 (583)
.+++ + +.++|+||++. +++++.|.. ++.+|+.++||||+ ++++++++.... |.| +++.-
T Consensus 88 ~A~~----~------g~~ii~iT~~g~L~~~a~~~~~~---~i~vP~~~~~R~s~~~~~~~~l~~l~~~~-g~d-~~~~~ 152 (308)
T TIGR02128 88 EAKK----K------GAKVIAITSGGRLEEMAKERGLD---VIKIPKGLQPRAAFPYLLTPLILMLIKPL-GID-IEEAE 152 (308)
T ss_pred HHHH----c------CCEEEEECCCcHHHHHHHhcCCe---EEEcCCCCCCeeeHHHHHHHHHHHHHHHc-CCC-hHHHH
Confidence 8875 2 24799999865 567777888 89999999999999 788888887754 887 44432
Q ss_pred HHHHHHHHHh-hCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEeechhhHHhhHHHHHHHhhhhCC
Q 007963 338 KGAWSIDQHF-ISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNG 401 (583)
Q Consensus 338 ~GA~~md~~f-~~~~~~~N~p~llAll~~~~~~~~g~~~~~ilpY~~~L~~~~~wlqQL~mES~G 401 (583)
+- . + ...+..+|++-.+|.- ..|+ .-++.+-++ ....+..+++-+.|--+
T Consensus 153 ~~----l--~~~~~~~~~n~Ak~LA~~------l~~~-~pvi~~~~~-~~~~A~R~k~~l~enak 203 (308)
T TIGR02128 153 LL----E--GGLDTPKLKALAKRLAEE------IYNR-IPVIYSSSP-TRPIAERWKNEINENAK 203 (308)
T ss_pred HH----h--cCCccccccCHHHHHHHH------hhCC-CCEEEeCCc-cHHHHHHHHHHHHhhcC
Confidence 21 1 2 2345678999999973 1332 334444334 77788888887787443
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.17 E-value=2e-10 Score=103.70 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=82.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
+|+++|+|+|+...+.+...+... .+.++++..... +.....+++++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~~~~-------~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a 66 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDE-------AKIPVYVVKDYT-------LPAFVDRKTLVIAVSYSGNTEETLSAVEQA 66 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhc-------cCCCEEEecCcc-------CcCCCCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 478999999999888777665531 245666654322 122346889999999999999999999988
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc---hHHHHcCCCCCCeeecccCCCCcchhhhchh
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 320 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~---~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavG 320 (583)
++ + +.++|+||++. +++.++|+. ++++|+..+||+|+|.-+-
T Consensus 67 ~~----~------g~~iI~IT~~~~l~~~~~~~~~~---~~~~p~~~~~r~s~~~~~~ 111 (119)
T cd05017 67 KE----R------GAKIVAITSGGKLLEMAREHGVP---VIIIPKGLQPRAAFPYLFT 111 (119)
T ss_pred HH----C------CCEEEEEeCCchHHHHHHHcCCc---EEECCCCCCCceeHHHHHH
Confidence 76 2 34799999765 467777887 8999999999999998664
No 19
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.13 E-value=5.8e-05 Score=80.43 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCC
Q 007963 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (583)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~ 240 (583)
.+.++++++.+.+. ++++|+++|.|+|+.....+...+... .+.++.+ .++..+.......-
T Consensus 29 ~~~l~~~~~~l~~~--------~~~~I~~~g~GsS~~aa~~~~~~~~k~-------~~i~v~~---~~~~~~~~~~~~~~ 90 (340)
T PRK11382 29 VPLVHAIVEEMVKR--------DIDRIYFVACGSPLNAAQTAKHLADRF-------SDLQVYA---ISGWEFCDNTPYRL 90 (340)
T ss_pred hHHHHHHHHHHHhC--------CCCEEEEEEechHHHHHHHHHHHHHHH-------cCCCeEE---eccHHHHhcCCcCC
Confidence 45677888888763 489999999999998888877666532 2334333 23344443333223
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
.+++++|++|.||.|.||+..++.+++ + +.++|+||.+. .+++.
T Consensus 91 ~~~~lvI~iS~SGeT~e~i~al~~ak~----~------Ga~~I~IT~~~~S~L~~~ 136 (340)
T PRK11382 91 DDRCAVIGVSDYGKTEEVIKALELGRA----C------GALTAAFTKRADSPITSA 136 (340)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH----c------CCeEEEEECCCCChHHHh
Confidence 577899999999999999998888876 2 25799999864 45554
No 20
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=2.5e-05 Score=83.19 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCC
Q 007963 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (583)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~ 240 (583)
...+.++++.++.. ++++|+.+|.|||+-....+...+... .+.. +..+.+..+...-....
T Consensus 24 ~~~~~~l~~~l~~~--------~~~~I~~~g~GsS~~~~~~~~~~~~~~-------~~~~---~~~~~~se~~~~~~~~~ 85 (340)
T COG2222 24 RAVLAELADFLRKR--------GIDRILFVGCGSSLHAATPAKYLLERE-------LGLL---VAAIPASEFLTNGAKYL 85 (340)
T ss_pred hhHHHHHHHHHHhC--------CCcEEEEEecCchHHHHHHHHHHHHHh-------hCce---eeeechhHHhccCcccc
Confidence 45566677777764 389999999999998888777776642 2223 33355666655556667
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
.+++++|++|+||+|.|++++++.++. .+.+.|++|... .+|+.
T Consensus 86 ~~~~lvi~~S~SG~TpE~vaa~~~a~~----------~ga~~i~lT~~~dSpLa~~ 131 (340)
T COG2222 86 GEDSLVIAFSQSGNTPESVAAAELAKE----------GGALTIALTNEEDSPLARA 131 (340)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHhcc----------CCCeEEEEecCCCChhhhc
Confidence 888999999999999999999988873 245789999765 35554
No 21
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=98.03 E-value=3.8e-05 Score=82.90 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH-HHHhcc
Q 007963 160 VLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITG 238 (583)
Q Consensus 160 ~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-~~~l~~ 238 (583)
..+.+++|++.+.++ ++++|+++|.|+|+-....+...+... .+.++.... |..+ ..-...
T Consensus 26 ~~~~~~~~~~~~~~~--------~~~~i~~~g~GsS~~a~~~~~~~~~~~-------~~i~v~~~~---~~e~~~~~~~~ 87 (372)
T TIGR02815 26 LRPALNAFLEPLLAR--------ENLRIVLTGAGTSAFIGDALAPWLASH-------TGLNVSAVP---TTDLVSNPRQY 87 (372)
T ss_pred hHHHHHHHHHHHHhC--------CCCEEEEEechHHHHHHHHHHHHHHHh-------cCCCEEEEe---Ccccccccccc
Confidence 346677888887664 478999999999998888887777643 244554432 1222 111122
Q ss_pred CCC-CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHc
Q 007963 239 LNP-ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (583)
Q Consensus 239 l~~-~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~ 295 (583)
+++ ++||+|.+|.||+|.||+.+++.+++ ++ .+.+.++||.+. .+++.-
T Consensus 88 ~~~~~~~lvi~iSqSGeT~etv~a~~~ak~----~~----~g~~~i~it~~~~s~la~~a 139 (372)
T TIGR02815 88 LDPTRPTLLVSFARSGNSPESVAAVELADQ----LL----PECYHLVLTCNEEGALYRNA 139 (372)
T ss_pred cCCCCCeEEEEEeCCcCcHHHHHHHHHHHH----hC----CCCcEEEEEcCCCCHHHHhh
Confidence 233 57999999999999999999988886 21 124679999753 566553
No 22
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.80 E-value=0.00019 Score=65.00 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
+|+++|.|+|..-...+...+... .+.++.+. ++.++.........++.++|++|+||+|.|++..++.+
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a 70 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKE-------SKLPVFVY---NAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFA 70 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHh-------cCCceEEE---cHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 378999999987777766655531 12333332 33334333333346779999999999999999999988
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhh
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQ 327 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala 327 (583)
++ + +..+|+||++. .+++.-. -++.++.. .|+..++=|+-+.++
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~~ad----~~l~~~~~----~~~~~~~~~~~~~~~ 116 (120)
T cd05710 71 KE----K------GATVIGLTDDEDSPLAKLAD----YVIVYGFE----IDAVEEKYLLLYMLA 116 (120)
T ss_pred HH----c------CCeEEEEECCCCCcHHHhCC----EEEEccCC----cCccchHHHHHHHHH
Confidence 87 2 24799999854 4555322 25666543 555556665555543
No 23
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=97.68 E-value=0.0002 Score=64.57 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=60.5
Q ss_pred EEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 007963 187 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLR 266 (583)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~ 266 (583)
|.++|+|+|..-...+...|... .+.++.+.+ +..+...... -.+++++|++|.||.|.|++..++.++
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~-------~~~~~~~~~---~~~~~~~~~~-~~~~d~~I~iS~sG~t~e~~~~~~~a~ 70 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERL-------AGIPVEVEA---ASEFRYRRPL-LDEDTLVIAISQSGETADTLAALRLAK 70 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHh-------cCCceEEEe---hhHhhhcCCC-CCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 78999999987666666555432 224444443 4444444443 367889999999999999999988887
Q ss_pred HHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 267 EWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 267 ~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
+ + +.++|+||++. .+++.
T Consensus 71 ~----~------g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 71 E----K------GAKTVAITNVVGSTLARE 90 (126)
T ss_pred H----c------CCeEEEEECCCCChHHHh
Confidence 6 2 35799999864 45543
No 24
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=97.67 E-value=0.0004 Score=65.75 Aligned_cols=121 Identities=11% Similarity=0.164 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH------------
Q 007963 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV------------ 232 (583)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~------------ 232 (583)
+.+++.+.++ +.|.++|.|+|..=++.+...+...... .+.+.++.++. .|+...
T Consensus 2 ~~~~~~l~~a----------~rI~~~G~G~S~~~A~~~a~~~~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~d~~~~~~ 68 (154)
T TIGR00441 2 VLLADSFKAG----------GKVLICGNGGSACDAQHFAAELTGRYRE--NRPGLPAIALS-ADVSHLTCVSNDYGYEDV 68 (154)
T ss_pred hHHHHHHHCC----------CEEEEEeCcHHHHHHHHHHHHhhccccc--CCCCceEEecC-CcHHHHHHhhccCCHHHH
Confidence 4567777765 5799999999987665554433221110 12344555544 244322
Q ss_pred -HHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccCC
Q 007963 233 -AKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (583)
Q Consensus 233 -~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~V 309 (583)
.+.+...-.++.++|++|.||.|.|++..++.+++ + +..+|+||++. .+++.-. -++.+|+.-
T Consensus 69 ~~~~~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~----~------g~~ii~iT~~~~s~l~~~ad----~~l~~~~~~ 134 (154)
T TIGR00441 69 FSRQVEALGQKGDVLLGISTSGNSKNVLKAIEAAKD----K------GMKTITLAGKDGGKMAGLAD----IELRVPHFY 134 (154)
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCC----EEEEeCCCC
Confidence 22222233678899999999999999999988876 2 35799999854 3554322 257777654
Q ss_pred CCc
Q 007963 310 GGR 312 (583)
Q Consensus 310 GGR 312 (583)
-||
T Consensus 135 ~~~ 137 (154)
T TIGR00441 135 TPR 137 (154)
T ss_pred cHH
Confidence 443
No 25
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=97.66 E-value=0.00045 Score=66.64 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCC
Q 007963 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN 240 (583)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~ 240 (583)
.+.++++++.+.+. +.|.++|+|+|..-.+.+..-|.. -+.++++++... ... -
T Consensus 20 ~~~l~~~~~~i~~a----------~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~~~~-------~~~-~ 73 (179)
T cd05005 20 EEELDKLISAILNA----------KRIFVYGAGRSGLVAKAFAMRLMH--------LGLNVYVVGETT-------TPA-I 73 (179)
T ss_pred HHHHHHHHHHHHhC----------CeEEEEecChhHHHHHHHHHHHHh--------CCCeEEEeCCCC-------CCC-C
Confidence 35678888888653 679999999997666655554432 245667764211 222 3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeeccc
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~ 307 (583)
.++.++|++|.||.|.|++..++.+++ + +..+|+||++. .+++.-. .+|.+|.
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~----~------g~~iI~IT~~~~s~la~~ad----~~l~~~~ 128 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKK----A------GAKVVLITSNPDSPLAKLAD----VVVVIPA 128 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCCchHHhCC----EEEEeCC
Confidence 567788999999999999998888776 2 35799999854 4554322 2565554
No 26
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=97.66 E-value=0.00042 Score=66.76 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
++++++++.+.+. +.|.++|.|+|..-.+.+..-|. .-+.+++++.... ... -.
T Consensus 18 ~~~~~~~~~l~~a----------~~I~i~G~G~S~~~A~~~~~~l~--------~~g~~~~~~~~~~-------~~~-~~ 71 (179)
T TIGR03127 18 EELDKLADKIIKA----------KRIFVAGAGRSGLVGKAFAMRLM--------HLGFNVYVVGETT-------TPS-IK 71 (179)
T ss_pred HHHHHHHHHHHhC----------CEEEEEecCHHHHHHHHHHHHHH--------hCCCeEEEeCCcc-------cCC-CC
Confidence 5688888888653 57999999999765554444332 1355677764321 123 35
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeeccc
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~ 307 (583)
++.++|++|+||.|.|++..++.+++ + +..+|+||++. .+++.-. -+|.+|.
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~----~------g~~ii~IT~~~~s~la~~ad----~~l~~~~ 125 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKE----I------GATVAAITTNPESTLGKLAD----VVVEIPA 125 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCCchHHhCC----EEEEeCC
Confidence 67889999999999999998888775 2 35799999854 4554322 2566554
No 27
>PRK13938 phosphoheptose isomerase; Provisional
Probab=97.62 E-value=0.00087 Score=66.26 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=67.6
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChH------------hHHHHhccCCCCceEEEEeCCC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPI------------DVAKSITGLNPETTLVVVVSKT 252 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~------------~~~~~l~~l~~~~TL~iviSKS 252 (583)
..|+++|.|||++-.+.+..-|.+.... ..+..+...+..-|+. .+.+.+...-.+.-++|++|.|
T Consensus 46 ~rI~i~G~G~S~~~A~~fa~~L~~~~~~--~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~DllI~iS~S 123 (196)
T PRK13938 46 ARVFMCGNGGSAADAQHFAAELTGHLIF--DRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAISTS 123 (196)
T ss_pred CEEEEEeCcHHHHHHHHHHHHcCCCccC--CcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 4699999999988777666555421100 0112223332211211 1234445556778889999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccCC
Q 007963 253 FTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (583)
Q Consensus 253 GtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~V 309 (583)
|+|.|++..++.+++ + +..+|++|++. .+++.-. -++.+|..-
T Consensus 124 G~t~~vi~a~~~Ak~----~------G~~vI~iT~~~~s~La~~aD----~~l~v~~~e 168 (196)
T PRK13938 124 GNSMSVLRAAKTARE----L------GVTVVAMTGESGGQLAEFAD----FLINVPSRD 168 (196)
T ss_pred CCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhhCC----EEEEeCCCc
Confidence 999999999988876 2 35799999854 4554322 256666543
No 28
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=97.57 E-value=0.001 Score=64.07 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHH-----
Q 007963 161 LDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS----- 235 (583)
Q Consensus 161 l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~----- 235 (583)
.+++++.++.+.+-- +.-+.|+++|.|+|..-+.-+..-|...... .+.+.+++++. .|+..+..+
T Consensus 16 ~~~i~~a~~~i~~~i------~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~--~~~g~~~~~~~-~~~~~~~~~~~~~~ 86 (177)
T cd05006 16 AEAIEQAAQLLAEAL------LNGGKILICGNGGSAADAQHFAAELVKRFEK--ERPGLPAIALT-TDTSILTAIANDYG 86 (177)
T ss_pred HHHHHHHHHHHHHHH------HCCCEEEEEeCcHHHHHHHHHHHHHhchhcc--CCCCCceEecc-CCHHHHHHHhccCC
Confidence 455666666654310 0125799999999987766555444321100 01234555554 233333222
Q ss_pred --------hccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeec
Q 007963 236 --------ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAF 305 (583)
Q Consensus 236 --------l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~ 305 (583)
+...-.++.++|++|.||.|.||+..++.+++ + +..+|+||++. .+++.-. -++.+
T Consensus 87 ~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~----~------Ga~vI~IT~~~~s~La~~aD----~~l~~ 152 (177)
T cd05006 87 YEEVFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKE----R------GMKTIALTGRDGGKLLELAD----IEIHV 152 (177)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchhhhCC----EEEEe
Confidence 22223567889999999999999999988876 2 35799999753 3444322 25777
Q ss_pred ccCCCCc
Q 007963 306 WDWVGGR 312 (583)
Q Consensus 306 ~~~VGGR 312 (583)
|..--+|
T Consensus 153 ~~~~~~~ 159 (177)
T cd05006 153 PSDDTPR 159 (177)
T ss_pred CCCChHH
Confidence 6655555
No 29
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=97.56 E-value=0.0017 Score=58.49 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCC
Q 007963 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPE 242 (583)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~ 242 (583)
.++++++.+.+. +.|+++|.|.|..-.+.+...|.. -+..+.++++ ..........+ .+
T Consensus 2 ~i~~~~~~i~~~----------~~i~i~g~g~s~~~a~~~~~~l~~--------~~~~~~~~~~--~~~~~~~~~~~-~~ 60 (139)
T cd05013 2 ALEKAVDLLAKA----------RRIYIFGVGSSGLVAEYLAYKLLR--------LGKPVVLLSD--PHLQLMSAANL-TP 60 (139)
T ss_pred HHHHHHHHHHhC----------CEEEEEEcCchHHHHHHHHHHHHH--------cCCceEEecC--HHHHHHHHHcC-CC
Confidence 467788888663 679999999987666655555543 2456666643 33444444444 56
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccC
Q 007963 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (583)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~ 308 (583)
++++|++|.||.|.|++..++.+++ + +.++|+||++. .+++-- +.++.+|..
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~----~------g~~iv~iT~~~~~~l~~~~----d~~i~~~~~ 114 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKE----R------GAKVIAITDSANSPLAKLA----DIVLLVSSE 114 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH----c------CCeEEEEcCCCCChhHHhc----CEEEEcCCC
Confidence 7899999999999999887776665 2 24789999865 333321 235666544
No 30
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.47 E-value=0.0013 Score=67.77 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+++.++++.+.+. ++|.++|+|+|..-.+-+..-|.. -+.++++. .|+......+..+++
T Consensus 116 ~~l~~~~~~i~~a----------~~I~i~G~G~s~~~A~~~~~~l~~--------~g~~~~~~--~d~~~~~~~~~~~~~ 175 (278)
T PRK11557 116 EKLHECVTMLRSA----------RRIILTGIGASGLVAQNFAWKLMK--------IGINAVAE--RDMHALLATVQALSP 175 (278)
T ss_pred HHHHHHHHHHhcC----------CeEEEEecChhHHHHHHHHHHHhh--------CCCeEEEc--CChHHHHHHHHhCCC
Confidence 5677888888763 689999999997655555544432 24455554 566666666677755
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHH
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~ 293 (583)
+ .++|++|.||.|.|++..++.+++ + +..+|+||++. .+++
T Consensus 176 ~-Dv~I~iS~sg~~~~~~~~~~~ak~----~------ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 176 D-DLLLAISYSGERRELNLAADEALR----V------GAKVLAITGFTPNALQQ 218 (278)
T ss_pred C-CEEEEEcCCCCCHHHHHHHHHHHH----c------CCCEEEEcCCCCCchHH
Confidence 4 478899999999999998888876 2 35799999864 3454
No 31
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0014 Score=64.98 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=70.9
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
.||+.|+|=|.+=.+.+..-|.. -+.+.+||.-.+ ..+-.+.-+.+++ ++|.+|+||.|.|-+..+..+
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s--------~G~~a~fv~p~e--a~hgdlg~i~~~D-vviaiS~SGeT~el~~~~~~a 109 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAS--------TGTPAFFVGPAE--ALHGDLGMITPGD-VVIAISGSGETKELLNLAPKA 109 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHc--------cCCceEEecCch--hccCCccCCCCCC-EEEEEeCCCcHHHHHHHHHHH
Confidence 49999999999999888877764 356889997222 2223366665554 678899999999999888877
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecc
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~ 306 (583)
++ .+..+|+||+++ .+|+.-.+ ++.+|
T Consensus 110 K~----------~g~~liaiT~~~~SsLak~aDv----vl~ip 138 (202)
T COG0794 110 KR----------LGAKLIAITSNPDSSLAKAADV----VLVIP 138 (202)
T ss_pred HH----------cCCcEEEEeCCCCChHHHhcCe----EEEcc
Confidence 76 245799999976 47776555 46665
No 32
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.44 E-value=0.00059 Score=61.61 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=60.5
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
.|.++|.|+|..-.+.+...|.. -+.++.++. |+..+...+..+ .++.++|++|.||.|.|++..++.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~~~d~vi~iS~sG~t~~~~~~~~~a 70 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSS--------TGTPAFFLH--PTEALHGDLGMV-TPGDVVIAISNSGETDELLNLLPHL 70 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhc--------CCCceEEcc--cchhhccccCcC-CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 48999999998777766655542 244555553 333333333444 5678899999999999999988887
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc--hHHH
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL--TLVE 293 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~a~ 293 (583)
++ + +.++|+||++. .+++
T Consensus 71 ~~----~------g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 71 KR----R------GAPIIAITGNPNSTLAK 90 (128)
T ss_pred HH----C------CCeEEEEeCCCCCchhh
Confidence 76 2 35799999865 3554
No 33
>PRK15482 transcriptional regulator MurR; Provisional
Probab=97.38 E-value=0.0017 Score=67.20 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
++++++++.+.+ -+.|.+.|+|.|..-.+.+..-|.. -+.++.+. .|+.........+ .
T Consensus 123 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~~--------~g~~~~~~--~d~~~~~~~~~~~-~ 181 (285)
T PRK15482 123 ARLQKIIEVISK----------APFIQITGLGGSALVGRDLSFKLMK--------IGYRVACE--ADTHVQATVSQAL-K 181 (285)
T ss_pred HHHHHHHHHHHh----------CCeeEEEEeChhHHHHHHHHHHHHh--------CCCeeEEe--ccHhHHHHHHhcC-C
Confidence 467888888865 3679999999997655555544432 24455554 3555444444555 4
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeeccc
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~ 307 (583)
++.++|++|.||.|.|++..++.+++ + +.++|+||+.. .+++.--+ +|.++.
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~----~------g~~iI~IT~~~~s~la~~ad~----~l~~~~ 235 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARK----Q------GATVIAITSLADSPLRRLAHF----TLDTVS 235 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCCchHHhCCE----EEEcCC
Confidence 55789999999999999998888876 2 35799999864 45553222 566554
No 34
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.32 E-value=0.0025 Score=62.35 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=57.8
Q ss_pred ceEEEEccccCchhHHHH-HHhhhcchhHHhhhCCceEEEeccCChHhH-------------HHHhccCCCCceEEEEeC
Q 007963 185 KDVVAVGIGGSFLGPLFV-HTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVS 250 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~-~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-------------~~~l~~l~~~~TL~iviS 250 (583)
+.|.++|.|+|+.-++.+ .++...+.. .+.+.+...+. .|+..+ ...+...-.++.++|++|
T Consensus 39 ~rI~i~G~G~S~~~A~~~a~~~~~~~~~---~r~g~~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dl~i~iS 114 (188)
T PRK13937 39 GKILLCGNGGSAADAQHIAAELVGRFKK---ERPALPAIALT-TDTSALTAIGNDYGFERVFSRQVEALGRPGDVLIGIS 114 (188)
T ss_pred CEEEEEeCcHhHHHHHHHHHHhhccccC---CCCCcceEecc-CcHHHHHHHhccCCHHHHHHHHHHhhCCCCCEEEEEe
Confidence 579999999997544433 222211110 01234444442 233221 122322346778999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHH
Q 007963 251 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (583)
Q Consensus 251 KSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~ 293 (583)
.||.|.|++..++.+++ + +..+|+||++. .+++
T Consensus 115 ~sG~t~~~~~~~~~ak~----~------g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 115 TSGNSPNVLAALEKARE----L------GMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCCCcHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHH
Confidence 99999999999888876 2 34799999854 3444
No 35
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.22 E-value=0.0041 Score=61.15 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=67.0
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH-------------HHHhccCCCCceEEEEeCC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 251 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-------------~~~l~~l~~~~TL~iviSK 251 (583)
..|.++|.|+|..=.+.+..-|.+.... .+.+.++..+ .|+..+ .+....+..+..++|++|.
T Consensus 45 ~rI~i~G~G~S~~~A~~~a~~l~~~~~~--~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~ 120 (192)
T PRK00414 45 GKVLSCGNGGSHCDAMHFAEELTGRYRE--NRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGIST 120 (192)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhcccccC--CCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4699999999987555555444321100 1234455554 355332 2334444578889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeeccc
Q 007963 252 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 252 SGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~ 307 (583)
||.|.+++..++.+++ + +..+|+||.+. .+++.-.+ ++.+|.
T Consensus 121 SG~t~~~i~~~~~ak~----~------g~~iI~iT~~~~s~l~~~ad~----~l~~~~ 164 (192)
T PRK00414 121 SGNSGNIIKAIEAARA----K------GMKVITLTGKDGGKMAGLADI----EIRVPH 164 (192)
T ss_pred CCCCHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHHhCCE----EEEeCC
Confidence 9999999999988876 2 35799999854 45553222 566655
No 36
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=97.20 E-value=0.0044 Score=71.04 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=61.1
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
.+.|+++|+|+|+.....+...+... .+..+.+.. +..+..... ...+++++|++|.||+|.||+..++
T Consensus 289 a~~I~~~G~GsS~~aa~~a~~~~~~~-------~~~~~~~~~---~~~~~~~~~-~~~~~dlvI~iS~SG~T~e~i~a~~ 357 (604)
T PRK00331 289 IDRIYIVACGTSYHAGLVAKYLIESL-------AGIPVEVEI---ASEFRYRDP-VLSPKTLVIAISQSGETADTLAALR 357 (604)
T ss_pred CCEEEEEEeecHHHHHHHHHHHHHHH-------cCCCEEEEe---hhhhhccCC-CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 67899999999987666665555432 233444332 222322222 2368899999999999999999988
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
.+++ + +.++|+||.+. .+++.
T Consensus 358 ~ak~----~------ga~~IaIT~~~~S~La~~ 380 (604)
T PRK00331 358 LAKE----L------GAKTLAICNVPGSTIARE 380 (604)
T ss_pred HHHH----C------CCCEEEEECCCCChhHHh
Confidence 8876 2 24789999854 45554
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=97.18 E-value=0.0017 Score=75.46 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=61.9
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
.+++|+++|.|+|+.....+...+... .+.++.... +.++...-..+ .+++++|++|.||+|.||+..+
T Consensus 362 ~~~~I~~~G~GsS~~aa~~a~~~l~kl-------~~i~v~~~~---~sef~~~~~~~-~~~~lvI~ISqSGeT~eti~Al 430 (680)
T PLN02981 362 RSRRIVFIGCGTSYNAALAARPILEEL-------SGVPVTMEL---ASDLLDRQGPI-YREDTAVFVSQSGETADTLRAL 430 (680)
T ss_pred cCCEEEEEEecHHHHHHHHHHHHHHHH-------hCCCEEEec---chHHHhccccC-CCCCeEEEEeCCcCCHHHHHHH
Confidence 368899999999998888777666542 234443322 22232222223 3477888999999999999999
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
+.+++ + +.++|+||.+. .+++.
T Consensus 431 ~~Ak~----~------Ga~~IaITn~~~S~La~~ 454 (680)
T PLN02981 431 EYAKE----N------GALCVGITNTVGSAISRG 454 (680)
T ss_pred HHHHH----C------CCcEEEEECCCCChhHhc
Confidence 88876 2 24689999764 45554
No 38
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.18 E-value=0.006 Score=60.35 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred ceEEEEccccCchhHHHHHHhhh-cchhHHhhhCCceEEEeccCChHh-------------HHHHhccCCCCceEEEEeC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQ-TDLEAIECARGRQLRFLANVDPID-------------VAKSITGLNPETTLVVVVS 250 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~-~~~~~~~~~~~~~i~fl~nvDp~~-------------~~~~l~~l~~~~TL~iviS 250 (583)
..|.++|.|||+.-++-+..-|. ++.. .+.+.+...+. .|... +.+.++..-.+.-++|++|
T Consensus 42 ~rI~~~G~GgSa~~A~~~a~~l~~~~~~---~r~gl~a~~l~-~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~iS 117 (196)
T PRK10886 42 NKILCCGNGTSAANAQHFAASMINRFET---ERPSLPAIALN-TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAIS 117 (196)
T ss_pred CEEEEEECcHHHHHHHHHHHHHhccccc---cCCCcceEEec-CcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEEe
Confidence 57999999999876655554442 2211 12344444332 23322 2344445567778888899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccC
Q 007963 251 KTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (583)
Q Consensus 251 KSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~ 308 (583)
.||+|.+.+..++.+++ + +-.+|+||... .+++-.+. .+-.+.+|..
T Consensus 118 ~SG~s~~v~~a~~~Ak~----~------G~~vI~IT~~~~s~l~~l~~~-~D~~i~ip~~ 166 (196)
T PRK10886 118 TRGNSRDIVKAVEAAVT----R------DMTIVALTGYDGGELAGLLGP-QDVEIRIPSH 166 (196)
T ss_pred CCCCCHHHHHHHHHHHH----C------CCEEEEEeCCCCChhhhcccc-CCEEEEcCCC
Confidence 99999999998888876 2 35799999754 34442211 1236777754
No 39
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=97.14 E-value=0.0041 Score=64.52 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+.+.++++.+.+ -+.|.++|+|+|..-++-+..-|. .-+.++.++. |..........+ .
T Consensus 128 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~--------~~g~~~~~~~--d~~~~~~~~~~~-~ 186 (292)
T PRK11337 128 DEFHRAARFFYQ----------ARQRDLYGAGGSAAIARDVQHKFL--------RIGVRCQAYD--DAHIMLMSAALL-Q 186 (292)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEecHHHHHHHHHHHHHh--------hCCCeEEEcC--CHHHHHHHHhcC-C
Confidence 567788888865 367899999999654444433332 1345666663 444444334444 4
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccC
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDW 308 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~ 308 (583)
++.++|++|.||.|.|++..++.+++ + +.++|+||++. .+++.-. -+|.+|..
T Consensus 187 ~~Dl~I~iS~sG~t~~~~~~~~~ak~----~------g~~ii~IT~~~~s~la~~ad----~~l~~~~~ 241 (292)
T PRK11337 187 EGDVVLVVSHSGRTSDVIEAVELAKK----N------GAKIICITNSYHSPIAKLAD----YVICSTAQ 241 (292)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEeCCCCChhHHhCC----EEEEcCCC
Confidence 56778999999999999998888776 2 35899999864 4555322 25666643
No 40
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=97.13 E-value=0.0042 Score=64.61 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+++.+.++.+.+ -+.|+++|.|.|..-..-+...|.. -+.++..++ |+......+..+ .
T Consensus 118 ~~l~~av~~L~~----------A~rI~~~G~g~S~~vA~~~~~~l~~--------ig~~~~~~~--d~~~~~~~~~~~-~ 176 (281)
T COG1737 118 EALERAVELLAK----------ARRIYFFGLGSSGLVASDLAYKLMR--------IGLNVVALS--DTHGQLMQLALL-T 176 (281)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEechhHHHHHHHHHHHHH--------cCCceeEec--chHHHHHHHHhC-C
Confidence 567777888876 3689999988776444444333332 345666665 444444455565 4
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
++.++|++|.||.|.|++..++.+++ + +..+|+||+.. .+++.
T Consensus 177 ~~Dv~i~iS~sG~t~e~i~~a~~ak~----~------ga~vIaiT~~~~spla~~ 221 (281)
T COG1737 177 PGDVVIAISFSGYTREIVEAAELAKE----R------GAKVIAITDSADSPLAKL 221 (281)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCcEEEEcCCCCCchhhh
Confidence 56678899999999999999998886 2 35799999863 34444
No 41
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.12 E-value=0.0029 Score=66.45 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+++.+.++.+.+. -+.|.+.|.|+|+.-++-+..-|.. -+.+.++++ |+..+......+ .
T Consensus 29 ~~~~~~~~~l~~~---------~~~I~i~G~G~S~~~A~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~ 88 (321)
T PRK11543 29 DDFVRAANIILHC---------EGKVVVSGIGKSGHIGKKIAATLAS--------TGTPAFFVH--PAEALHGDLGMI-E 88 (321)
T ss_pred HHHHHHHHHHHhc---------CCcEEEEecChhHHHHHHHHHHHHc--------CCCceeecC--hHHHhhCCcCcc-C
Confidence 3566777777542 2479999999998766665554432 345566664 333333333333 5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
++.++|++|.||.|.|++..++.+++ + +..+|+||++. .+++.
T Consensus 89 ~~d~~i~iS~sG~t~~~~~~~~~ak~----~------g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 89 SRDVMLFISYSGGAKELDLIIPRLED----K------SIALLAMTGKPTSPLGLA 133 (321)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHH----c------CCeEEEEECCCCChhHHh
Confidence 67889999999999999999988876 2 35799999854 45554
No 42
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.11 E-value=0.0034 Score=52.44 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=55.9
Q ss_pred EEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHH-hccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 187 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS-ITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~-l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
|+++|.|+|..-...+...|... .+.++.++.. +...... +.. ..++.++|++|+||.|.|+...++.+
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~-------~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~i~iS~sg~t~~~~~~~~~a 70 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLEL-------TGIEVVALIA--TELEHASLLSL-LRKGDVVIALSYSGRTEELLAALEIA 70 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcc-------cCCceEEeCC--cHHHHHHHHhc-CCCCCEEEEEECCCCCHHHHHHHHHH
Confidence 57899999987777777666542 1456666643 2222222 333 46889999999999999999988877
Q ss_pred HHHHHHhcCccccCCeEEEEc
Q 007963 266 REWISTALGPSAVAKHMVAVS 286 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT 286 (583)
++ + +..+|+||
T Consensus 71 ~~----~------g~~ii~it 81 (87)
T cd04795 71 KE----L------GIPVIAIT 81 (87)
T ss_pred HH----c------CCeEEEEe
Confidence 65 2 24688988
No 43
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=97.09 E-value=0.0049 Score=70.66 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=61.5
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
+.+.|+++|+|+|+.....+...+... .+..+.++. +..+...... ..+++++|++|.||.|.||+..+
T Consensus 290 ~~~~I~~~G~GsS~~aa~~a~~~~~~~-------~~i~~~~~~---~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~v~a~ 358 (607)
T TIGR01135 290 NVDRIQIVACGTSYHAGLVAKYLIERL-------AGIPVEVEI---ASEFRYRKPV-VDKDTLVIAISQSGETADTLAAL 358 (607)
T ss_pred cCCEEEEEEeechHHHHHHHHHHHHHh-------cCCCEEEec---HHHHhhcCCC-CCCCCEEEEEeCCCCCHHHHHHH
Confidence 468899999999976555555444321 233444432 2333332223 36889999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
+.+++ + +..+|+||.+. .+++.
T Consensus 359 ~~ak~----~------ga~~IaIT~~~~S~La~~ 382 (607)
T TIGR01135 359 RLAKE----L------GAKTLGICNVPGSTLVRE 382 (607)
T ss_pred HHHHH----c------CCcEEEEECCCCChHHhh
Confidence 88876 2 24689999864 45554
No 44
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.08 E-value=0.0017 Score=75.01 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=63.0
Q ss_pred ccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 183 VLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 183 ~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
++++|+++|.|+|+.....+...|... .+... +....+..+... . ...+++++|++|.||.|.||+..+
T Consensus 321 ~~~~I~i~g~GsS~~aa~~~~~~l~~~-------~~~~~--v~~~~~s~~~~~-~-~~~~~~lvI~ISqSGeT~d~i~al 389 (640)
T PTZ00295 321 NIKNLILVGCGTSYYAALFAASIMQKL-------KCFNT--VQVIDASELTLY-R-LPDEDAGVIFISQSGETLDVVRAL 389 (640)
T ss_pred cCCEEEEEEeehHHHHHHHHHHHHHHh-------CCCCc--eEEechHHhhhh-c-cCCCCCEEEEEeCCCCcHHHHHHH
Confidence 468899999999998888877666532 12211 111233444322 2 234688999999999999999999
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHc
Q 007963 263 RTLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~ 295 (583)
+.+++ + +..+|+||.+. .+++.-
T Consensus 390 ~~ak~----~------Ga~~IaITn~~~S~La~~a 414 (640)
T PTZ00295 390 NLADE----L------NLPKISVVNTVGSLIARST 414 (640)
T ss_pred HHHHH----C------CCCEEEEECCCCChhHHhc
Confidence 88876 2 24789999754 466553
No 45
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=97.07 E-value=0.0031 Score=56.64 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=65.4
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
-++|+++|.|.|.--++.+...|... ......+.+ ........+..+ .+++++|++|.||.|.|++..++
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l~~~-------~~~~~~~~~--~~~~~~~~~~~~-~~~d~vi~is~sg~~~~~~~~~~ 74 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKLQKL-------GRIVVISYE--AGEFFHGPLENL-DPDDLVIIISYSGETRELIELLR 74 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHHHHH-------HSSEEEEEE--HHHHHTTGGGGC-STTEEEEEEESSSTTHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHh-------cCcceeccc--hHHHhhhhcccc-cccceeEeeeccccchhhhhhhH
Confidence 36899999999976555555444322 122222222 222345546665 46788999999999999999888
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeecccCC
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAFWDWV 309 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~~~~V 309 (583)
.+++ + +.++|+||++. .+++.- +.+|.+|..-
T Consensus 75 ~ak~----~------g~~vi~iT~~~~~~l~~~a----d~~l~~~~~~ 108 (131)
T PF01380_consen 75 FAKE----R------GAPVILITSNSESPLARLA----DIVLYIPTGE 108 (131)
T ss_dssp HHHH----T------TSEEEEEESSTTSHHHHHS----SEEEEEESSC
T ss_pred HHHh----c------CCeEEEEeCCCCCchhhhC----CEEEEecCCC
Confidence 7765 2 35789999754 455543 2467776543
No 46
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=96.98 E-value=0.0078 Score=61.98 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+++.++++.+.+ -+.|.++|.|+|..-...+..-|.. .+.+....+ |..........+ .
T Consensus 116 ~~i~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~-~ 174 (284)
T PRK11302 116 SAINRAVDLLTQ----------AKKISFFGLGASAAVAHDAQNKFFR--------FNVPVVYFD--DIVMQRMSCMNS-S 174 (284)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEcchHHHHHHHHHHHHHh--------cCCceEecC--CHHHHHHHHHhC-C
Confidence 568888888865 3679999999997655443332221 244444443 332222222333 5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCC
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (583)
++.++|++|.||.|.|++..++.+++ + +.++|+||+.
T Consensus 175 ~~D~vI~iS~sG~t~~~~~~~~~ak~----~------g~~vI~IT~~ 211 (284)
T PRK11302 175 DGDVVVLISHTGRTKSLVELAQLARE----N------GATVIAITSA 211 (284)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----c------CCeEEEECCC
Confidence 56788899999999999998888876 2 3579999974
No 47
>PRK13936 phosphoheptose isomerase; Provisional
Probab=96.83 E-value=0.018 Score=56.83 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhh-cchhHHhhhCCceEEEeccCChHhH--------
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ-TDLEAIECARGRQLRFLANVDPIDV-------- 232 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~-~~~~~~~~~~~~~i~fl~nvDp~~~-------- 232 (583)
+.+..+++.+.++ +.|.++|.|||..-++-+..-|. .... .+.+.+...+ +.|+...
T Consensus 31 ~a~~~~~~~l~~a----------~~I~i~G~G~S~~~A~~~~~~l~~r~~~---~r~g~~~~~~-~~~~~~~~~~~~d~~ 96 (197)
T PRK13936 31 QAVELMVQALLNE----------GKILACGNGGSAADAQHFSAELLNRFER---ERPSLPAIAL-TTDTSTLTAIANDYS 96 (197)
T ss_pred HHHHHHHHHHHCC----------CEEEEEeCcHhHHHHHHHHHHccCccCC---CCccceeEec-CCcHHHHHHHhhcCC
Confidence 3445556666665 57999999999865554443332 2110 0122333332 2233321
Q ss_pred -H----HHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHHcCCCCCCeeec
Q 007963 233 -A----KSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEKFGIDPNNAFAF 305 (583)
Q Consensus 233 -~----~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~Gi~~~~~f~~ 305 (583)
. +.+.....++-++|++|.||.|.|++..++.+++ + +..+|+||++. .+++ ..-..+-.+.+
T Consensus 97 ~~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~----~------g~~iI~IT~~~~s~l~~-l~~~ad~~l~v 165 (197)
T PRK13936 97 YNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHE----R------EMHVVALTGRDGGKMAS-LLLPEDVEIRV 165 (197)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCCCChhhh-hhccCCEEEEe
Confidence 1 1122334567788889999999999998888876 2 35799999854 3333 11011235666
Q ss_pred ccC
Q 007963 306 WDW 308 (583)
Q Consensus 306 ~~~ 308 (583)
|..
T Consensus 166 ~~~ 168 (197)
T PRK13936 166 PAE 168 (197)
T ss_pred CCC
Confidence 654
No 48
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.75 E-value=0.016 Score=61.16 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCC
Q 007963 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPE 242 (583)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~ 242 (583)
.+++.++.+.+. -+.|.++|.|.|+.-.+.+..-|.. -+.+..++.. +.........+ .+
T Consensus 35 ~l~~~~~~l~~a---------~~~I~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~~--~~~~~~~~~~~-~~ 94 (326)
T PRK10892 35 DFTLACEKMFWC---------KGKVVVMGMGKSGHIGRKMAATFAS--------TGTPSFFVHP--GEAAHGDLGMV-TP 94 (326)
T ss_pred HHHHHHHHHHhc---------CCeEEEEeCcHhHHHHHHHHHHHhc--------CCceeEEeCh--HHhhccccccC-CC
Confidence 477777777542 1469999999998766655554432 3456666532 11112223344 45
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHH
Q 007963 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVE 293 (583)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~ 293 (583)
+.++|++|.||.|.|++..++.+++ + +..+|+||++. .+++
T Consensus 95 ~d~~I~iS~sG~t~~~~~~~~~ak~----~------g~~vi~iT~~~~s~la~ 137 (326)
T PRK10892 95 QDVVIAISNSGESSEILALIPVLKR----L------HVPLICITGRPESSMAR 137 (326)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH----C------CCcEEEEECCCCCcccc
Confidence 6799999999999999999888876 2 34799999864 4554
No 49
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=96.65 E-value=0.0081 Score=69.83 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=61.9
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
+++|+++|.|+|+.....+..++... .+.++.+. .+.++...... ..+++++|++|.||+|.||+..++
T Consensus 354 a~rI~ivG~GtS~~aa~~ak~~~~kl-------~~i~v~v~---~asef~~~~~~-~~~~dlvI~ISqSGeT~dtl~Al~ 422 (670)
T PTZ00394 354 SRRILFIACGTSLNSCLAVRPLFEEL-------VPLPISVE---NASDFLDRRPR-IQRDDVCFFVSQSGETADTLMALQ 422 (670)
T ss_pred CCEEEEEEechHHHHHHHHHHHHHHh-------cCCCEEEe---ccchhhhhccC-CCCCCEEEEEECCcCcHHHHHHHH
Confidence 58899999999997776665555432 12333322 22333322223 368899999999999999999999
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc--hHHHHc
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL--TLVEKF 295 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~~ 295 (583)
.+++ + +.++|+||.+. .+++.-
T Consensus 423 ~Ak~----~------Ga~tIaITn~~~S~La~~A 446 (670)
T PTZ00394 423 LCKE----A------GAMCVGITNVVGSSISRLT 446 (670)
T ss_pred HHHH----C------CCcEEEEECCCCCHHHHhc
Confidence 8876 2 24789999854 456553
No 50
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.37 E-value=0.025 Score=65.37 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC
Q 007963 162 DKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241 (583)
Q Consensus 162 ~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~ 241 (583)
+.+.++++.+.+ -+.|.++|+|.|..-...+..-|.. -+.++.++ .|..........++
T Consensus 456 ~~l~~aa~~L~~----------a~rI~i~G~G~S~~~A~~~~~~l~~--------lg~~~~~~--~d~~~~~~~~~~l~- 514 (638)
T PRK14101 456 EHVEQAIDILNN----------ARRIEFYGLGNSNIVAQDAHYKFFR--------FGIPTIAY--GDLYMQAASAALLG- 514 (638)
T ss_pred HHHHHHHHHHhc----------CCEEEEEEccHHHHHHHHHHHHHhc--------CCceEEEc--CCHHHHHHHHhcCC-
Confidence 466777888765 3679999999998655554433321 23444444 35444433344554
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc-hHHH
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-TLVE 293 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~a~ 293 (583)
++.++|++|.||.|.|++..++.+++ + +..+|+||+.. .+++
T Consensus 515 ~~DvvI~iS~sG~t~e~i~~~~~Ak~----~------Ga~vIaIT~~~spLa~ 557 (638)
T PRK14101 515 KGDVIVAVSKSGRAPELLRVLDVAMQ----A------GAKVIAITSSNTPLAK 557 (638)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEcCCCChhHh
Confidence 55678889999999999998888876 2 35799999853 3444
No 51
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.32 E-value=0.048 Score=56.15 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc--hHHHH
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL--TLVEK 294 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~--~~a~~ 294 (583)
.++.++|++|.||.|.+++..++.+++ + +..+|+||.+. .+++.
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARA----R------GALTIGIACNPGSPLLQL 162 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCCCChhHHh
Confidence 466677999999999999999988876 2 35689999865 34443
No 52
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.22 E-value=0.023 Score=57.98 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
.|.+.|.|+|..-.+-+..-|.. -+.++.+++. .......... -.++.++|++|.||.|.|++..++.+
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~--------~g~~~~~~~~--~~~~~~~~~~-~~~~d~~i~iS~sG~t~~~~~~~~~a 70 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAS--------TGTPSFFLHP--TEAMHGDLGM-VEPNDVVLMISYSGESLELLNLIPHL 70 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHh--------cCCceEEeCH--hHHhhcccCC-CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 38899999997655554443331 3456666542 2222212223 35678999999999999999999988
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc--hHHH
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL--TLVE 293 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~--~~a~ 293 (583)
++ + +..+|+||++. .+++
T Consensus 71 ~~----~------g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 71 KR----L------SHKIIAFTGSPNSSLAR 90 (268)
T ss_pred HH----c------CCcEEEEECCCCCcccc
Confidence 86 2 24699999854 4444
No 53
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.11 E-value=0.063 Score=56.53 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc
Q 007963 239 LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (583)
Q Consensus 239 l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (583)
++ ++.++|++|.||.|.+++..++.+++ . +..+|+||.+.
T Consensus 129 l~-~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~tI~IT~~~ 168 (299)
T PRK05441 129 LT-AKDVVVGIAASGRTPYVIGALEYARE----R------GALTIGISCNP 168 (299)
T ss_pred CC-CCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCC
Confidence 44 55678888999999999999988876 2 35789999865
No 54
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.11 E-value=0.071 Score=56.07 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (583)
.++.++|++|.||.|.+++..++.+++ . +..+|+||.+.
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~~IaIT~~~ 164 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQ----I------GATTIALSCNP 164 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCeEEEEECCC
Confidence 467888999999999999999888876 2 34689999764
No 55
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=96.04 E-value=0.027 Score=52.04 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHH-hccCCC
Q 007963 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS-ITGLNP 241 (583)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~-l~~l~~ 241 (583)
+++++++.+.+ .++|+++|.|+|+.-..-...-+... ...+... .+..++..- ...+ .
T Consensus 2 ~~~~~a~~~~~----------~~~i~~~G~G~s~~~a~e~~~kl~e~-------~~i~~~~---~~~~e~~hg~~~~~-~ 60 (153)
T cd05009 2 DIKELAEKLKE----------AKSFYVLGRGPNYGTALEGALKLKET-------SYIHAEA---YSAGEFKHGPIALV-D 60 (153)
T ss_pred hHHHHHHHHhc----------cCcEEEEcCCCCHHHHHHHHHHHHHH-------Hhhccee---ccHHHhccChhhhc-c
Confidence 45667777765 58899999999975544433333211 1122222 333333332 3334 4
Q ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHHHcCCCCCCeeecccC
Q 007963 242 ETTLVVVVSKTFTTAE-TMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDW 308 (583)
Q Consensus 242 ~~TL~iviSKSGtT~E-Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~~~Gi~~~~~f~~~~~ 308 (583)
+++++|++|.||.|.| +...++.+++ . +.++++||++.+-+ +. . +.++.+|..
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~~----~------~~~vi~it~~~~s~-~~-~--d~~i~~~~~ 114 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVKA----R------GAKVIVITDDGDAK-DL-A--DVVIRVPAT 114 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHHH----c------CCEEEEEecCCccc-cc-C--CeEEECCCC
Confidence 5788888999998776 5544444443 2 35799999865431 11 1 135666654
No 56
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.65 E-value=0.047 Score=57.27 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (583)
.++-++|++|.||.|.+++..++.+++ + +...|+||.+.
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~------Ga~tIaIT~~~ 163 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARS----L------GALTISIACNP 163 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHH----C------CCeEEEEECCC
Confidence 356788889999999999998888876 2 35789999864
No 57
>PRK02947 hypothetical protein; Provisional
Probab=95.26 E-value=0.13 Score=52.49 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.9
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc
Q 007963 241 PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (583)
Q Consensus 241 ~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (583)
.++-++|++|.||.|.|++..++.+++ + +..+|+||++.
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~----~------g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKE----R------GAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C------CCEEEEEcCCc
Confidence 566788999999999999998888776 2 35799999864
No 58
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.24 E-value=0.14 Score=58.24 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=62.8
Q ss_pred CccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHH
Q 007963 182 KVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 261 (583)
Q Consensus 182 ~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n 261 (583)
+.+++|.+++.|-|+-+..+....+... .+.++.+-- +.++..--..+. ++||+|.+|.||.|.-|+.+
T Consensus 281 ~~~~rI~IvAcGTSYhAglv~ky~~E~l-------a~ipv~Ve~---aSEfry~~~~~~-~~~L~I~ISQSGETaDTl~A 349 (597)
T COG0449 281 REVDRIIIVACGTSYHAGLVAKYFFERL-------AKIPVEVEE---ASEFRYREPALN-PNTLVIAISQSGETADTLAA 349 (597)
T ss_pred cccceEEEEECcHHHHHHHHHHHHHHHH-------hCCCeEEEe---echhhhhccCCC-CCcEEEEEccCcccHHHHHH
Confidence 3589999999999998877776666543 233333321 112222222344 44999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCeEEEEcCC--chHHHHc
Q 007963 262 ARTLREWISTALGPSAVAKHMVAVSTN--LTLVEKF 295 (583)
Q Consensus 262 ~~~~~~~l~~~~g~~~~~~h~vaVT~~--~~~a~~~ 295 (583)
++.+++ . | .+.++||.- ..++++-
T Consensus 350 Lr~ak~----~-G-----~~tlaItNv~gSti~Res 375 (597)
T COG0449 350 LRLAKE----Q-G-----AKTLAITNVPGSTIARES 375 (597)
T ss_pred HHHHHH----c-C-----CCEEEEEecCCChhhccc
Confidence 998886 2 2 468999963 3566653
No 59
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=93.55 E-value=0.53 Score=43.60 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCccccCCCccceEEEEccccCchh-HHHHHHhhhcchhHHhhhCCceEEEecc-----------CChHhH
Q 007963 165 KEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLG-PLFVHTALQTDLEAIECARGRQLRFLAN-----------VDPIDV 232 (583)
Q Consensus 165 ~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LG-p~~~~~aL~~~~~~~~~~~~~~i~fl~n-----------vDp~~~ 232 (583)
+.+++.+++| ..|.++|-|||..- ..+..++...... .....+...+.+ .|+...
T Consensus 26 ~~i~~~~~~g----------g~i~~~G~G~S~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (138)
T PF13580_consen 26 DLIAEALRNG----------GRIFVCGNGHSAAIASHFAADLGGLFGV---NRILLPAIALNDDALTAISNDLEYDEGFA 92 (138)
T ss_dssp HHHHHHHHTT------------EEEEESTHHHHHHHHHHHHHHCHSSS---TSSS-SEEETTSTHHHHHHHHTTGGGTHH
T ss_pred HHHHHHHHCC----------CEEEEEcCchhhhHHHHHHHHHhcCcCC---CcccccccccccchHhhhhcccchhhHHH
Confidence 3445556665 35999999999644 4555555543211 011122222321 122333
Q ss_pred HHHhcc--CCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcC
Q 007963 233 AKSITG--LNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVST 287 (583)
Q Consensus 233 ~~~l~~--l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~ 287 (583)
..++.. +.|.+. +|++|-||+|.=++..++.+++ + +-.+|+||+
T Consensus 93 ~~~~~~~~~~~gDv-li~iS~SG~s~~vi~a~~~Ak~----~------G~~vIalTg 138 (138)
T PF13580_consen 93 RQLLALYDIRPGDV-LIVISNSGNSPNVIEAAEEAKE----R------GMKVIALTG 138 (138)
T ss_dssp HHHHHHTT--TT-E-EEEEESSS-SHHHHHHHHHHHH----T------T-EEEEEEE
T ss_pred HHHHHHcCCCCCCE-EEEECCCCCCHHHHHHHHHHHH----C------CCEEEEEeC
Confidence 444444 556665 5677899999999998888876 2 246888874
No 60
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=87.46 E-value=13 Score=36.22 Aligned_cols=91 Identities=15% Similarity=0.209 Sum_probs=57.9
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH-------------HHHhccCCCCceEEEEeCC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-------------AKSITGLNPETTLVVVVSK 251 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-------------~~~l~~l~~~~TL~iviSK 251 (583)
..|+.+|-|||+--++-...-|-+.+.. ++++.+-.-++ +|+..+ .+..+.+-.+--+++-+|-
T Consensus 42 ~Kvl~cGNGgSaadAqHfaael~gRf~~--eR~~lpaIaLt-~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigIST 118 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFEK--ERPSLPAIALS-TDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGIST 118 (176)
T ss_pred CEEEEECCCcchhhHHHHHHHHhhHHHh--cCCCCCeeEee-cccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 3599999999987766555544443321 23444444333 344433 3444445556667889999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCC
Q 007963 252 TFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288 (583)
Q Consensus 252 SGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~ 288 (583)
||+..-.+..++.+++ .+-++|+.|.+
T Consensus 119 SGNS~nVl~Ai~~Ak~----------~gm~vI~ltG~ 145 (176)
T COG0279 119 SGNSKNVLKAIEAAKE----------KGMTVIALTGK 145 (176)
T ss_pred CCCCHHHHHHHHHHHH----------cCCEEEEEecC
Confidence 9999888887777765 13478999964
No 61
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=80.42 E-value=11 Score=43.75 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCC-
Q 007963 163 KIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP- 241 (583)
Q Consensus 163 ~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~- 241 (583)
.++++++.+.+ .++++++|.|.++ +-+..-+|+= .+ .. .++.-.--+.+..+--+..+++
T Consensus 485 ~~~~~a~~l~~----------a~~i~~lGrG~~~--~iA~E~ALKL-kE----i~--~i~ae~~~~~E~~HGp~ali~~~ 545 (640)
T PTZ00295 485 QCKRIAEKLKN----------AKSMFILGKGLGY--PIALEGALKI-KE----IT--YIHAEGFSGGALKHGPFALIDKE 545 (640)
T ss_pred HHHHHHHHHhC----------CCcEEEEECCCCH--HHHHHHHHHH-HH----Hh--hhhhhhcChHHhhhhHHHHhcCC
Confidence 35555665543 4789999999885 3333334421 00 01 1111111222223333444554
Q ss_pred CceEEEEeCCCCC-CHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHHHcCCCCCCeeeccc
Q 007963 242 ETTLVVVVSKTFT-TAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 242 ~~TL~iviSKSGt-T~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~~~Gi~~~~~f~~~~ 307 (583)
+++.+|++|-+|. +.+++.+++.+++ + +.++++||++.....+ .. +.++.+|.
T Consensus 546 ~~~~VI~i~~~~~~~~~~~~~~~~lk~----r------ga~vi~It~~~~~l~~--~a-d~~i~ip~ 599 (640)
T PTZ00295 546 KNTPVILIILDDEHKELMINAAEQVKA----R------GAYIIVITDDEDLVKD--FA-DEIILIPS 599 (640)
T ss_pred CCCeEEEEEcCCccHHHHHHHHHHHHH----c------CCEEEEEecCCccccc--cC-CeEEEeCC
Confidence 4677776666666 6677777766654 2 3589999986532111 11 23677776
No 62
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=74.74 E-value=6.7 Score=44.22 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=80.3
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
-+.++.||.|-||-..-|....|... ..+++-+ .+-.+-+.+--+-+ .+-..+++|.||.|..|+.+.+
T Consensus 355 ~rRli~iacgtSyhs~~A~R~ilEEL-------~eiPV~v--ElAsDflDR~~pif--RdDvc~FvSqSGETaDtllaL~ 423 (670)
T KOG1268|consen 355 CRRLIMVACGTSYHSALATRPILEEL-------SEIPVSV--ELASDFLDRNTPIF--RDDVCFFVSQSGETADTLLALR 423 (670)
T ss_pred ccccEEEEecchHHHHHHHHHHHHHH-------hcCCeee--ehhhhhHhcCCCce--eccEEEEEecCCchHHHHHHHH
Confidence 46799999999998777776666532 2233322 22222333322222 3445677899999999999998
Q ss_pred HHHHHHHHhcCccccCCeEEEEcC--CchHHHHc--CCCCCCeeecccCCCC--cchhhh-chhhhHHHhhcCchHH---
Q 007963 264 TLREWISTALGPSAVAKHMVAVST--NLTLVEKF--GIDPNNAFAFWDWVGG--RYSVCS-AVGVLPLSLQYGFSVV--- 333 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~--~~~~a~~~--Gi~~~~~f~~~~~VGG--RfSv~S-avGLlP~Ala~G~d~~--- 333 (583)
++++ + +.-.|.||. +...+++- |+. ..--+.||= -=+-.| -|.|+-.||.++-|.+
T Consensus 424 Yc~~----~------gAl~vGvtNtvGSsIsR~thCGvH----iNaGpEigvAsTKaYTSQ~i~lvm~aL~~s~d~is~~ 489 (670)
T KOG1268|consen 424 YCKE----R------GALTVGVTNTVGSSISRETHCGVH----INAGPEIGVASTKAYTSQYIALVMFALWMSEDRVSKQ 489 (670)
T ss_pred HHHh----c------CceEEEeecccCccccccccccee----ccCCCccceeechHHHHHHHHHHHHHHHhccchhhHH
Confidence 8876 2 245788885 33555543 322 111122321 001111 1456666666665543
Q ss_pred ---HHHHHHHHHHHHHhhC
Q 007963 334 ---EKFLKGAWSIDQHFIS 349 (583)
Q Consensus 334 ---~~lL~GA~~md~~f~~ 349 (583)
+|+++|-....+..++
T Consensus 490 ~RR~eIi~gL~~l~~~ike 508 (670)
T KOG1268|consen 490 ERRKEIIDGLKDLPSQIKE 508 (670)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777776654
No 63
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=56.94 E-value=1.8e+02 Score=30.52 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=79.3
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhc---cCC--CCceEEEEeCCCCCCHHHH
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT---GLN--PETTLVVVVSKTFTTAETM 259 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~---~l~--~~~TL~iviSKSGtT~ETl 259 (583)
+-|||-|+.|| |--++.+.|.+. -.+.+||..|+-+-+.+. ..+ -.+..+++==.|+ |-.
T Consensus 2 ~lvIVTGlSGA--GKsvAl~~lEDl----------GyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~---~~~ 66 (286)
T COG1660 2 RLVIVTGLSGA--GKSVALRVLEDL----------GYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSR---EFF 66 (286)
T ss_pred cEEEEecCCCC--cHHHHHHHHHhc----------CeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccc---hhH
Confidence 34788899999 555666777642 356789999997766665 333 2566666666766 455
Q ss_pred HHHHHHHHHHHHhcCccccCCeEEEEcCCch-HHHHcCCCCCCeeecccCCCCcchhhhchhhhHHHhhcCchHHHHHHH
Q 007963 260 LNARTLREWISTALGPSAVAKHMVAVSTNLT-LVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLK 338 (583)
Q Consensus 260 ~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~-~a~~~Gi~~~~~f~~~~~VGGRfSv~SavGLlP~Ala~G~d~~~~lL~ 338 (583)
..+..+.+.|.++. + +.-+++.+.+..+ +.+.+.-. - |-=-+|.-|++.-++. .+ +++|+
T Consensus 67 ~~l~~~l~~l~~~~--~-~~~~iLFLeA~~~~Lv~RY~et---R---------R~HPL~~~~~l~~~I~--~E--RelL~ 127 (286)
T COG1660 67 GDLEEVLDELKDNG--D-IDPRVLFLEADDETLVRRYSET---R---------RSHPLSEDGLLLEAIA--KE--RELLA 127 (286)
T ss_pred HHHHHHHHHHHhcC--C-CCceEEEEECchhHHHHHHhhh---h---------hcCCCCccCcHHHHHH--HH--HHHHH
Confidence 55555666565542 1 3456777776543 44443222 0 1112666775444442 33 78998
Q ss_pred HHHHHHHHhhC
Q 007963 339 GAWSIDQHFIS 349 (583)
Q Consensus 339 GA~~md~~f~~ 349 (583)
--+++.+....
T Consensus 128 pLk~~A~~vID 138 (286)
T COG1660 128 PLREIADLVID 138 (286)
T ss_pred HHHHHhhhEee
Confidence 88888777653
No 64
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=56.38 E-value=45 Score=33.24 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=51.5
Q ss_pred cCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCC
Q 007963 139 RAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG 218 (583)
Q Consensus 139 R~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~ 218 (583)
|...+-.....|+.+.+..+..++.+++..+.+.+.. ......|.||+.++.+-+.++.+....+ ++
T Consensus 46 R~~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~~------~~~~~~l~ig~~~~~~~~~~l~~~~~~~-------p~ 112 (279)
T TIGR03339 46 RNGRRLELTDAGHRLLPIVERLFQQEAEAEFLLRESG------ALREGSLRIAATAPYYVLDLVARFRQRY-------PG 112 (279)
T ss_pred EcCCeEEEChhHHHHHHHHHHHHHHHHHHHHHHHHhc------cCcceEEEEeCchHHHHHHHHHHHHHHC-------CC
Confidence 4444433456688888888888887777777765421 1244578899987766666665544322 34
Q ss_pred ceEEEeccCChHhHHHHh
Q 007963 219 RQLRFLANVDPIDVAKSI 236 (583)
Q Consensus 219 ~~i~fl~nvDp~~~~~~l 236 (583)
.++.+.....++-+..+.
T Consensus 113 v~l~i~~~~~~~~~~~l~ 130 (279)
T TIGR03339 113 IEVSVRIGNSQEVLQALQ 130 (279)
T ss_pred cEEEEEECCHHHHHHHHH
Confidence 677777654444444444
No 65
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=54.60 E-value=88 Score=30.67 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=37.8
Q ss_pred HHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc------hHHHHcCCC
Q 007963 234 KSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 298 (583)
Q Consensus 234 ~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~a~~~Gi~ 298 (583)
+.+....-...-++.--+|.+|.| |++..++++.+. + -++++.||++- ..+++.|++
T Consensus 113 ~~~~~~gv~~~~i~~e~~s~~T~e---Na~~s~~~l~~~-~----~~~~ilVTs~~Hm~Ra~~~~~~~g~~ 175 (223)
T COG1434 113 RYLENLGVPAERIILEDRSRNTVE---NARFSRRLLRTQ-G----PESVILVTSPYHMPRALLLFRKLGIS 175 (223)
T ss_pred HHHHHcCCCcccEEecCCCccHHH---HHHHHHHHHHHc-C----CceEEEECCHHHHHHHHHHHHHCCCc
Confidence 444444445555666667766655 666777877765 2 35899999864 367778887
No 66
>PRK13018 cell division protein FtsZ; Provisional
Probab=54.13 E-value=1.6e+02 Score=32.32 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=52.0
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCC-----CCCCHHH-
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET- 258 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSK-----SGtT~ET- 258 (583)
.|.+||+||. |..++-...... .. .+-|+. |+|...+.. ++.++-+.+=-+. +|+..|.
T Consensus 30 ~I~ViGvGGa--G~N~v~~m~~~~------~~--~v~~iaiNTD~q~L~~----~~a~~ki~iG~~~t~G~GaG~dp~~G 95 (378)
T PRK13018 30 KIVVVGCGGA--GNNTINRLYEIG------IE--GAETIAINTDAQHLAM----IKADKKILIGKSLTRGLGAGGDPEVG 95 (378)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC------CC--CceEEEEECCHHHHhc----CCCCcEEecCCccCCCCCCCCChHHH
Confidence 6899999998 777776655421 12 244554 789865553 3333333221111 4677776
Q ss_pred HHHHHHHHHHHHHhcCccccCCeEEEEcCC-------------chHHHHcCCC
Q 007963 259 MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 298 (583)
Q Consensus 259 l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~a~~~Gi~ 298 (583)
-..+....+.+++.+.. ..+|.||.. .+.++++|+.
T Consensus 96 ~~aaee~~d~I~~~le~----~D~vfI~aGLGGGTGSGaapvIa~iake~g~l 144 (378)
T PRK13018 96 RKAAEESRDEIKEVLKG----ADLVFVTAGMGGGTGTGAAPVVAEIAKEQGAL 144 (378)
T ss_pred HHHHHHHHHHHHHHhcC----CCEEEEEeeccCcchhhHHHHHHHHHHHcCCC
Confidence 33444555666655421 234555532 1577877754
No 67
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=50.18 E-value=2.5e+02 Score=30.44 Aligned_cols=96 Identities=23% Similarity=0.346 Sum_probs=58.3
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCC-----CCCCHHH
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET 258 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSK-----SGtT~ET 258 (583)
-.|++||+||. |..++-......- .+ +-|+. |+|...+... ..++.+-+=-+. -|.-.|.
T Consensus 12 ~~I~VIGvGg~--G~n~v~~m~~~~~------~g--ve~ia~nTD~q~L~~~----~a~~ki~iG~~~t~GlGaGa~P~v 77 (338)
T COG0206 12 ARIKVIGVGGA--GGNAVNRMIEEGV------EG--VEFIAINTDAQALKSS----KADRKILIGESITRGLGAGANPEV 77 (338)
T ss_pred ceEEEEEeCCc--chHHHHHHHHhhh------Cc--eEEEEeccCHHHHhcc----ccCeEEEeccceeeccCCCCCcHH
Confidence 46999999998 7777766655321 22 55554 8997665433 334444333331 2555665
Q ss_pred -HHHHHHHHHHHHHhcCccccCCeEEEEcCC-------------chHHHHcCCC
Q 007963 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGID 298 (583)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~a~~~Gi~ 298 (583)
..++...++-+.+.+. ..++|.||+. .+.|++.|+.
T Consensus 78 G~~aAee~~~~I~~~l~----g~dmvfitaG~GGGTGtGaaPVvakiake~g~l 127 (338)
T COG0206 78 GRAAAEESIEEIEEALK----GADMVFVTAGMGGGTGTGAAPVVAEIAKELGAL 127 (338)
T ss_pred HHHHHHHHHHHHHHHhc----cCCeEEEEeeecCCccccccHHHHHHHHhcCCc
Confidence 4556666666666542 3458888852 1688888887
No 68
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=49.74 E-value=5.4 Score=38.99 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=36.5
Q ss_pred EEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCH
Q 007963 189 AVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTA 256 (583)
Q Consensus 189 ~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ 256 (583)
+++||+|.=||+++.+.|..... ..+..+.++-.++|.....+.+.|+..+.+=|..-+.|..+
T Consensus 1 vV~IGaSaGG~~al~~il~~lp~----~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g~~l 64 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALPA----DFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDGEPL 64 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-T----TSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT-B-
T ss_pred CEEEEeCCCCHHHHHHHHHHhcc----CCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCCCEe
Confidence 57899999999999988876431 23356777777777765555555554455555554554444
No 69
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=49.48 E-value=97 Score=32.08 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHh
Q 007963 157 VWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (583)
Q Consensus 157 ~~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l 236 (583)
++...+.+.+=.+.+.+| ++..||++-|--|+ |--.+..++.... ...+++++-|+.-|-.++.+++
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G-------~pannvLL~G~rGt--GKSSlVkall~~y----~~~GLRlIev~k~~L~~l~~l~ 98 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG-------LPANNVLLWGARGT--GKSSLVKALLNEY----ADQGLRLIEVSKEDLGDLPELL 98 (249)
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCcceEEecCCCC--CHHHHHHHHHHHH----hhcCceEEEECHHHhccHHHHH
Confidence 334455555555666554 57889999987776 4333444443322 1356787777765555555555
Q ss_pred ccC--CCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc-hHHHHcCCC----CCCeeecccCC
Q 007963 237 TGL--NPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGID----PNNAFAFWDWV 309 (583)
Q Consensus 237 ~~l--~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~a~~~Gi~----~~~~f~~~~~V 309 (583)
..| .|.+.++.+-=-||..-|+ .++.++..|.-.+ +..+.+=++..|+|. .+..|.-.+ ...-..-.|.+
T Consensus 99 ~~l~~~~~kFIlf~DDLsFe~~d~--~yk~LKs~LeGgl-e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~ 175 (249)
T PF05673_consen 99 DLLRDRPYKFILFCDDLSFEEGDT--EYKALKSVLEGGL-EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTI 175 (249)
T ss_pred HHHhcCCCCEEEEecCCCCCCCcH--HHHHHHHHhcCcc-ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHH
Confidence 443 4688888888889998887 4566676654322 222344456677764 233332222 11234445667
Q ss_pred CCcchhhhchhhhHHHhhcCchHHHHHHHH
Q 007963 310 GGRYSVCSAVGVLPLSLQYGFSVVEKFLKG 339 (583)
Q Consensus 310 GGRfSv~SavGLlP~Ala~G~d~~~~lL~G 339 (583)
--+-|+.-.+| |-+.+. -+| -++.|+=
T Consensus 176 eEklSLsDRFG-L~l~F~-~~~-q~~YL~I 202 (249)
T PF05673_consen 176 EEKLSLSDRFG-LWLSFY-PPD-QEEYLAI 202 (249)
T ss_pred HHHHhHHHhCC-cEEEec-CCC-HHHHHHH
Confidence 77888888899 566764 677 4788773
No 70
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=49.24 E-value=1.3e+02 Score=32.59 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=39.2
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe-ccCChHhHHHHhccCCCCceEEEEeCC------CCCCHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL-ANVDPIDVAKSITGLNPETTLVVVVSK------TFTTAET 258 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~~~~~l~~l~~~~TL~iviSK------SGtT~ET 258 (583)
.|.+||+||. |..++-...... -..+-|+ -|+|...+. ..+.++. +.+-++ +|+..|.
T Consensus 19 ~i~viGvGg~--G~n~v~~l~~~~--------~~~~~~iainTD~~~L~----~~~a~~k-i~iG~~~t~G~GaG~~~~~ 83 (349)
T TIGR00065 19 KIKVIGVGGG--GNNTVNRMLEEG--------VEGVEFIAINTDAQHLK----TTKADKK-ILIGKKLTRGLGAGGNPEI 83 (349)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC--------CCceEEEEEECCHHHHh----cCCCCeE-EEcCCCCCCCCCCCCCHHH
Confidence 5899999998 777776554431 1134444 378976554 3333333 333332 4556665
Q ss_pred -HHHHHHHHHHHHHhc
Q 007963 259 -MLNARTLREWISTAL 273 (583)
Q Consensus 259 -l~n~~~~~~~l~~~~ 273 (583)
-..+...++.+++..
T Consensus 84 G~~~aee~~d~Ir~~l 99 (349)
T TIGR00065 84 GRKAAEESRDEIRKLL 99 (349)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 223334445454443
No 71
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=48.67 E-value=1e+02 Score=34.08 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=17.9
Q ss_pred EEeechhhHHhhHHHHHHHhhhhCCC
Q 007963 377 AILPYSQALEKFAPHIQQVSMESNGK 402 (583)
Q Consensus 377 ~ilpY~~~L~~~~~wlqQL~mES~GK 402 (583)
.+=...+..+.++.|+.+-+..+.|+
T Consensus 309 lmRtt~eE~~~~g~~ia~kLn~~~gp 334 (403)
T PF06792_consen 309 LMRTTPEENRQLGEFIAEKLNRAKGP 334 (403)
T ss_pred EeeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 34455667778888887777776665
No 72
>PRK09330 cell division protein FtsZ; Validated
Probab=48.51 E-value=1.6e+02 Score=32.33 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe-ccCChHhHHHHhccCCCCceEEEEeCC-----CCCCHHH
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL-ANVDPIDVAKSITGLNPETTLVVVVSK-----TFTTAET 258 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~~~~~l~~l~~~~TL~iviSK-----SGtT~ET 258 (583)
..|.|||+||. |..++-...... .. .+-|+ -|+|...+. ..+.++.+.+=-+. +|+..|.
T Consensus 14 ~~IkViGvGG~--G~Nav~~m~~~~------~~--~v~fia~NTD~q~L~----~~~a~~ki~lG~~~t~GlGaG~~pe~ 79 (384)
T PRK09330 14 AVIKVIGVGGG--GGNAVNRMIEEG------IQ--GVEFIAANTDAQALL----KSKAPVKIQLGEKLTRGLGAGANPEV 79 (384)
T ss_pred CeEEEEEECCc--HHHHHHHHHHcC------CC--CceEEEEeCcHHHHh----cCCCCeEEEcCCcccccCCCCCCHHH
Confidence 35889999998 777776654421 12 23444 378976554 33333333332221 3556664
Q ss_pred -HHHHHHHHHHHHHhcCccccCCeEEEEcCCc-------------hHHHHcCCCCCCeeecc
Q 007963 259 -MLNARTLREWISTALGPSAVAKHMVAVSTNL-------------TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-------------~~a~~~Gi~~~~~f~~~ 306 (583)
-..+...++.+++.+. ...+|.||... ++|+++|+..--+++.|
T Consensus 80 G~~aaee~~e~I~~~l~----~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~P 137 (384)
T PRK09330 80 GRKAAEESREEIREALE----GADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHHHHHHHHHc----CCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3334444555555442 23567777421 57888887633344444
No 73
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=48.27 E-value=23 Score=31.66 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCchHHHHcCCC
Q 007963 244 TLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGID 298 (583)
Q Consensus 244 TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~~a~~~Gi~ 298 (583)
-++||.|+||.|.--++.++ +...++++|++.+.++...+-
T Consensus 18 k~Ivv~T~sG~ta~~isk~R--------------P~~pIiavt~~~~~~r~l~l~ 58 (117)
T PF02887_consen 18 KAIVVFTESGRTARLISKYR--------------PKVPIIAVTPNESVARQLSLY 58 (117)
T ss_dssp SEEEEE-SSSHHHHHHHHT---------------TSSEEEEEESSHHHHHHGGGS
T ss_pred CEEEEECCCchHHHHHHhhC--------------CCCeEEEEcCcHHHHhhhhcc
Confidence 37999999999987776433 346799999999999987654
No 74
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.88 E-value=2.3e+02 Score=26.28 Aligned_cols=99 Identities=22% Similarity=0.195 Sum_probs=61.7
Q ss_pred EEEEcccc--CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 187 VVAVGIGG--SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 187 VV~IGIGG--S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
||+.-+|| -.+|-.++...|+. .+.+++++. ++.++++.++..+.+++ ++.+++-++++.+. ++
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~--------~G~eVi~LG~~vp~e~i~~~a~~~~~d--~V~lS~~~~~~~~~---~~ 72 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE--------AGFEVINLGVMTSQEEFIDAAIETDAD--AILVSSLYGHGEID---CR 72 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcCccccCHHH---HH
Confidence 55555554 37899988887763 578899996 89999999988776553 44445455554444 34
Q ss_pred HHHHHHHHhcCccccCCeEEEEcCCc-----------hHHHHcCCCCCCeee
Q 007963 264 TLREWISTALGPSAVAKHMVAVSTNL-----------TLVEKFGIDPNNAFA 304 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~vaVT~~~-----------~~a~~~Gi~~~~~f~ 304 (583)
.+.+.|++.+ .. .-+ |.+-... +.+++.|++ .+|+
T Consensus 73 ~~~~~L~~~~-~~--~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~--~vf~ 118 (137)
T PRK02261 73 GLREKCIEAG-LG--DIL-LYVGGNLVVGKHDFEEVEKKFKEMGFD--RVFP 118 (137)
T ss_pred HHHHHHHhcC-CC--CCe-EEEECCCCCCccChHHHHHHHHHcCCC--EEEC
Confidence 5556665542 21 122 3333221 478889986 4665
No 75
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=47.57 E-value=83 Score=29.04 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=28.2
Q ss_pred HhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc------hHHHHcCCC
Q 007963 230 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGID 298 (583)
Q Consensus 230 ~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~a~~~Gi~ 298 (583)
+.+.+.+....-....+++-.+|-+|. .|+...++++.+. | . ++++.||++- ..+++.+.+
T Consensus 57 ~~~~~~l~~~gvp~~~I~~e~~s~~T~---ena~~~~~~~~~~-~---~-~~iilVT~~~H~~Ra~~~~~~~~~~ 123 (155)
T PF02698_consen 57 EAMRDYLIELGVPEERIILEPKSTNTY---ENARFSKRLLKER-G---W-QSIILVTSPYHMRRARMIFRKVGPD 123 (155)
T ss_dssp HHHHHHHHHT---GGGEEEE----SHH---HHHHHHHHHHHT--S---S-S-EEEE--CCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcccchheeEccCCCCCHH---HHHHHHHHHHHhh-c---C-CeEEEECCHHHHHHHHHHHHHhCCC
Confidence 455666644433344456666666655 5556666777654 2 2 6899999864 345555555
No 76
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=45.99 E-value=1.3e+02 Score=31.77 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=64.5
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCC-----CCceEEEEeCCCCCCHHHH
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----PETTLVVVVSKTFTTAETM 259 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~-----~~~TL~iviSKSGtT~ETl 259 (583)
+-|||.|+.|| |--.+..+|.+ .-.+-+||+-|.-+.+.++.+. -++..+++-..|+.-.+.+
T Consensus 2 ~~vIiTGlSGa--GKs~Al~~lED----------~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~ 69 (284)
T PF03668_consen 2 ELVIITGLSGA--GKSTALRALED----------LGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL 69 (284)
T ss_pred eEEEEeCCCcC--CHHHHHHHHHh----------cCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH
Confidence 35788899999 55556667764 2467799999998887776544 4688899999998765543
Q ss_pred HHHHHHHHHHHHhcCccccCCeEEEEcCCc-hHHHHcCCC
Q 007963 260 LNARTLREWISTALGPSAVAKHMVAVSTNL-TLVEKFGID 298 (583)
Q Consensus 260 ~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-~~a~~~Gi~ 298 (583)
..+.+.+.+. + ..-+++...+.. .+.+.|.-.
T Consensus 70 ---~~~~~~l~~~-~---~~~~ilFLdA~d~~LirRy~eT 102 (284)
T PF03668_consen 70 ---FEALDELRKK-G---IDVRILFLDASDEVLIRRYSET 102 (284)
T ss_pred ---HHHHHHHHhc-C---CceEEEEEECChHHHHHHHHhc
Confidence 3344445444 2 345788887655 567766554
No 77
>PRK10494 hypothetical protein; Provisional
Probab=44.87 E-value=97 Score=32.00 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=44.1
Q ss_pred HhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc------hHHHHcCCCCCCee
Q 007963 230 IDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGIDPNNAF 303 (583)
Q Consensus 230 ~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~a~~~Gi~~~~~f 303 (583)
+...+.+..+.-...-+++-.+|-+|.|-..+.+ +++ + .++++.||+.- ...++.|++ +.
T Consensus 140 ~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~---~~~----~----~~~iiLVTsa~Hm~RA~~~f~~~Gl~---v~ 205 (259)
T PRK10494 140 EVGARVAQSLGVPREDIITLDLPKDTEEEAAAVK---QAI----G----DAPFLLVTSASHLPRAMIFFQQEGLN---PL 205 (259)
T ss_pred HHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHH---HHh----C----CCCEEEECCHHHHHHHHHHHHHcCCc---ee
Confidence 3446666666555555678889999988776543 332 2 24699999864 467888997 78
Q ss_pred ecccC
Q 007963 304 AFWDW 308 (583)
Q Consensus 304 ~~~~~ 308 (583)
+.|-+
T Consensus 206 p~Ptd 210 (259)
T PRK10494 206 PAPAN 210 (259)
T ss_pred ecCCc
Confidence 88754
No 78
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=43.18 E-value=1.2e+02 Score=27.74 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=35.8
Q ss_pred hHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc------hHHHHcCC
Q 007963 231 DVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL------TLVEKFGI 297 (583)
Q Consensus 231 ~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~------~~a~~~Gi 297 (583)
.+.+.+....-...-+++-.+|-+|.| |+...++++.+.. .++++.||+.- ..++..+.
T Consensus 55 ~m~~~l~~~gv~~~~I~~e~~s~~T~e---na~~~~~~~~~~~-----~~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 55 AMARYLIELGVPAEAILLEDRSTNTYE---NARFSAELLRERG-----IRSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHHHHHcCCCHHHeeecCCCCCHHH---HHHHHHHHHHhcC-----CCeEEEECCHHHHHHHHHHHHHcCC
Confidence 455555444333345666777777555 5566777776653 16899999864 24555554
No 79
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=42.11 E-value=65 Score=33.56 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=26.4
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCc-eEEEeccCChHhHHHHhcc
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGR-QLRFLANVDPIDVAKSITG 238 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~-~i~fl~nvDp~~~~~~l~~ 238 (583)
+.|+++|-||.. +++..+|.. .+. +++++ |-+++..+++.+.
T Consensus 123 ~~vlilGaGGaa---rAi~~aL~~--------~g~~~i~i~-nR~~~~a~~la~~ 165 (272)
T PRK12550 123 LVVALRGSGGMA---KAVAAALRD--------AGFTDGTIV-ARNEKTGKALAEL 165 (272)
T ss_pred CeEEEECCcHHH---HHHHHHHHH--------CCCCEEEEE-eCCHHHHHHHHHH
Confidence 379999999985 666666653 233 45555 4566665555443
No 80
>PLN02828 formyltetrahydrofolate deformylase
Probab=40.81 E-value=54 Score=34.23 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEE-EcCCc--------hHHHHcCCCCCCeeeccc
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVA-VSTNL--------TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~va-VT~~~--------~~a~~~Gi~~~~~f~~~~ 307 (583)
..-+.|.+||+|+..+-+.... . .|. ....+++ ||.+. +.|+++||| ++.+|.
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~------~--~g~--l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP---~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRW------Q--DGR--LPVDITCVISNHERGPNTHVMRFLERHGIP---YHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhh------h--cCC--CCceEEEEEeCCCCCCCchHHHHHHHcCCC---EEEeCC
Confidence 4468899999999998875321 1 132 2234555 45441 579999999 665554
No 81
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=40.68 E-value=50 Score=34.83 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=38.8
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe-ccCChHhHHHHhccCCCCceEEEEeCC------CCCCHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL-ANVDPIDVAKSITGLNPETTLVVVVSK------TFTTAET 258 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~~~~~l~~l~~~~TL~iviSK------SGtT~ET 258 (583)
.|.+||+||. |..++-...... .. .+-|+ -|+|...+... +.++.+ .+-++ +|+..|.
T Consensus 2 ~i~viGvGg~--G~n~v~~l~~~~------~~--~~~~~a~ntD~~~L~~~----~~~~k~-~ig~~~t~g~Gag~~~~~ 66 (304)
T cd02201 2 KIKVIGVGGG--GGNAVNRMIESG------LE--GVEFIAANTDAQALAKS----KAPNKI-QLGKELTRGLGAGGDPEV 66 (304)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcC------CC--CceEEEEECCHHHHhcC----CCCcEE-EcCCCCCCCCCCCCCHHH
Confidence 4889999998 777776554421 12 23343 37897766543 333333 33222 3566665
Q ss_pred HH-HHHHHHHHHHHhc
Q 007963 259 ML-NARTLREWISTAL 273 (583)
Q Consensus 259 l~-n~~~~~~~l~~~~ 273 (583)
-. .+....+.+++..
T Consensus 67 g~~~a~~~~~~I~~~l 82 (304)
T cd02201 67 GRKAAEESREEIKEAL 82 (304)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 22 3334444444443
No 82
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=39.16 E-value=1.9e+02 Score=30.52 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=51.9
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNAR 263 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~ 263 (583)
|..+-+..++-...-...+.++|.+... .-+..+.+-. .+ ...-+.|.+|++|+..+.+..+.
T Consensus 52 fm~i~~~~~~~~~~~~~~l~~~l~~l~~----~l~l~~~i~~-~~------------~~~kiavl~Sg~g~nl~al~~~~ 114 (289)
T PRK13010 52 FMRVSFHAQSAEAASVDTFRQEFQPVAE----KFDMQWAIHP-DG------------QRPKVVIMVSKFDHCLNDLLYRW 114 (289)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHHHHHHH----HhCCeEEEec-CC------------CCeEEEEEEeCCCccHHHHHHHH
Confidence 3344445444344456667777765431 1234433322 22 23357889999999998875431
Q ss_pred HHHHHHHHhcCccccCCeEEE-EcCCc---hHHHHcCCCCCCeeecc
Q 007963 264 TLREWISTALGPSAVAKHMVA-VSTNL---TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 264 ~~~~~l~~~~g~~~~~~h~va-VT~~~---~~a~~~Gi~~~~~f~~~ 306 (583)
++ |. ....+++ ||++. +.|+++||| ++.++
T Consensus 115 ------~~--~~--l~~~i~~visn~~~~~~~A~~~gIp---~~~~~ 148 (289)
T PRK13010 115 ------RM--GE--LDMDIVGIISNHPDLQPLAVQHDIP---FHHLP 148 (289)
T ss_pred ------HC--CC--CCcEEEEEEECChhHHHHHHHcCCC---EEEeC
Confidence 11 22 2234555 45543 689999999 66654
No 83
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=38.75 E-value=85 Score=32.92 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=52.7
Q ss_pred cceEEEEccccCchhHHHHHHhhhc-chhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQT-DLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~-~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
|.-++.+-+-++..-...+.++|.. ... .-+.++.+-+. | ...-+.|.+|++|+..+.+...
T Consensus 42 F~mr~~v~~~~~~~~~~~l~~~l~~~~~~----~~~l~i~l~~~-~------------~~~ki~vl~Sg~g~nl~~l~~~ 104 (280)
T TIGR00655 42 FFMRVEFQLEGFRLEESSLLAAFKSALAE----KFEMTWELILA-D------------KLKRVAILVSKEDHCLGDLLWR 104 (280)
T ss_pred EEEEEEEEeCCCCCCHHHHHHHHHHHHHH----HhCCEEEEecC-C------------CCcEEEEEEcCCChhHHHHHHH
Confidence 4444444444443455667777665 431 23455555432 2 2235788999999999887543
Q ss_pred HHHHHHHHHhcCccccCCeEEE-EcCCc---hHHHHcCCCCCCeeecc
Q 007963 263 RTLREWISTALGPSAVAKHMVA-VSTNL---TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~va-VT~~~---~~a~~~Gi~~~~~f~~~ 306 (583)
. .. |. ....+++ ||++. ..|+++||| ++.++
T Consensus 105 ~------~~--g~--l~~~i~~visn~~~~~~~A~~~gIp---~~~~~ 139 (280)
T TIGR00655 105 W------YS--GE--LDAEIALVISNHEDLRSLVERFGIP---FHYIP 139 (280)
T ss_pred H------Hc--CC--CCcEEEEEEEcChhHHHHHHHhCCC---EEEcC
Confidence 1 11 22 2234555 45544 479999999 66654
No 84
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=38.72 E-value=1.5e+02 Score=29.90 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcChHHHHHHHhcC-CCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHH
Q 007963 96 TLKTMDKLYQLAEAAQLNNKINRMYNG-EKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFS 168 (583)
Q Consensus 96 t~~~l~~L~~la~~~~l~~~~~~m~~G-~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa 168 (583)
+-+.++.|..++++-.+.++-+.|.-- -.|. .-|.. -.|.. |.+.+-.....|+...+.++..+++++++.
T Consensus 2 ~~~~l~~f~~v~~~gs~s~AA~~L~isqpavS~~I~~LE~~lG~~LF~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~~~ 79 (275)
T PRK03601 2 DTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFT--RHRNNIRLTAAGERLLPYAETLMNTWQAAK 79 (275)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCceEE--ECCCceEECHhHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888777776666511 0000 00111 01221 555444455668888888888899999988
Q ss_pred HHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhc
Q 007963 169 ETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSIT 237 (583)
Q Consensus 169 ~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~ 237 (583)
+++.+.. ...-|.||+..+ .+.|.++..+.+.+ ++.++.+....+.+-+..+..
T Consensus 80 ~~~~~~~--------~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~-------P~v~v~~~~~~~~~~~~~l~~ 136 (275)
T PRK03601 80 KEVAHTS--------QHNELSIGASASLWECMLTPWLGRLYQNQ-------EALQFEARIAQRQSLVKQLHE 136 (275)
T ss_pred HHHhhcc--------cCceEEEeccHHHHHHHHHHHHHHHHHhC-------CCcEEEEEECChHHHHHHHHc
Confidence 8886532 123567777654 33455554443322 356777766655555555543
No 85
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.36 E-value=2.7e+02 Score=23.99 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=34.5
Q ss_pred CceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc---hHHHH
Q 007963 218 GRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNL---TLVEK 294 (583)
Q Consensus 218 ~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~---~~a~~ 294 (583)
+.++++-|-.|+..+.++ .++..+++++... +..+++.....+++ .. ...++++...+. +..++
T Consensus 41 ~~~~i~gd~~~~~~l~~a--~i~~a~~vv~~~~---~d~~n~~~~~~~r~----~~----~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 41 GVEVIYGDATDPEVLERA--GIEKADAVVILTD---DDEENLLIALLARE----LN----PDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp TSEEEES-TTSHHHHHHT--TGGCESEEEEESS---SHHHHHHHHHHHHH----HT----TTSEEEEEESSHHHHHHHHH
T ss_pred ccccccccchhhhHHhhc--CccccCEEEEccC---CHHHHHHHHHHHHH----HC----CCCeEEEEECCHHHHHHHHH
Confidence 345555566666655544 3333444444433 44555555554544 11 125777777654 46677
Q ss_pred cCCC
Q 007963 295 FGID 298 (583)
Q Consensus 295 ~Gi~ 298 (583)
.|++
T Consensus 108 ~g~d 111 (116)
T PF02254_consen 108 AGAD 111 (116)
T ss_dssp TT-S
T ss_pred CCcC
Confidence 7876
No 86
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=37.11 E-value=2.2e+02 Score=25.06 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=53.9
Q ss_pred CchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCCC-CCCHHHHHHHHHHHHHHHHh
Q 007963 195 SFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKT-FTTAETMLNARTLREWISTA 272 (583)
Q Consensus 195 S~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSKS-GtT~ETl~n~~~~~~~l~~~ 272 (583)
-.+|.+++..+|+. .+.++.++. ++.++++.+.+.+.+|+ +|++|-| +.+.+.+ ..+.+.+++.
T Consensus 12 H~lG~~~~~~~l~~--------~G~~V~~lg~~~~~~~l~~~~~~~~pd---vV~iS~~~~~~~~~~---~~~i~~l~~~ 77 (119)
T cd02067 12 HDIGKNIVARALRD--------AGFEVIDLGVDVPPEEIVEAAKEEDAD---AIGLSGLLTTHMTLM---KEVIEELKEA 77 (119)
T ss_pred hhHHHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCCC---EEEEeccccccHHHH---HHHHHHHHHc
Confidence 47899999988874 467888875 88888998888877665 5555554 5555443 3344444443
Q ss_pred cCccccCCeEEEEcC-----CchHHHHcCCC
Q 007963 273 LGPSAVAKHMVAVST-----NLTLVEKFGID 298 (583)
Q Consensus 273 ~g~~~~~~h~vaVT~-----~~~~a~~~Gi~ 298 (583)
+. .+-.|.+.. ..+.+++.|++
T Consensus 78 -~~---~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 78 -GL---DDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred -CC---CCCeEEEECCCCChhHHHHHHcCCe
Confidence 22 112244443 23578888876
No 87
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.10 E-value=25 Score=27.94 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCC
Q 007963 501 KLLAIYEHRIAVEGFIWGINSF 522 (583)
Q Consensus 501 ~LialyE~~t~v~g~l~gINpF 522 (583)
+|+.+||..+ -+||||
T Consensus 39 ~ll~lYE~Vs------~~iNPF 54 (55)
T PF05377_consen 39 DLLSLYEVVS------NQINPF 54 (55)
T ss_pred HHHHHHHHHH------ccCCCC
Confidence 3899999866 499999
No 88
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=36.70 E-value=4.2e+02 Score=25.99 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=63.6
Q ss_pred ceEEEEccccC--chhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHH
Q 007963 185 KDVVAVGIGGS--FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLN 261 (583)
Q Consensus 185 ~~VV~IGIGGS--~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n 261 (583)
..||+..++|- .+|..++...|+. .|.+++++. |+.++++.+.....+|+ +|.+|-|-++. +.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~--------~G~~vi~LG~~vp~e~~v~~~~~~~pd---~v~lS~~~~~~--~~~ 151 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRA--------NGFDVIDLGRDVPIDTVVEKVKKEKPL---MLTGSALMTTT--MYG 151 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHh--------CCcEEEECCCCCCHHHHHHHHHHcCCC---EEEEccccccC--HHH
Confidence 35766667754 7899999988874 467899885 89999999998876654 55555543332 334
Q ss_pred HHHHHHHHHHhcCccccCCeEEEEcC---CchHHHHcCCC
Q 007963 262 ARTLREWISTALGPSAVAKHMVAVST---NLTLVEKFGID 298 (583)
Q Consensus 262 ~~~~~~~l~~~~g~~~~~~h~vaVT~---~~~~a~~~Gi~ 298 (583)
++.+.+.+++.+..+ +=-|.|-. +.+.+++.|.+
T Consensus 152 ~~~~i~~l~~~~~~~---~v~i~vGG~~~~~~~~~~~gad 188 (197)
T TIGR02370 152 QKDINDKLKEEGYRD---SVKFMVGGAPVTQDWADKIGAD 188 (197)
T ss_pred HHHHHHHHHHcCCCC---CCEEEEEChhcCHHHHHHhCCc
Confidence 566666666653211 11233333 34788888876
No 89
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=35.63 E-value=54 Score=32.83 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=32.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeE-EEEcCCc-----hHHHHcCCCCCCeeeccc
Q 007963 245 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHM-VAVSTNL-----TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 245 L~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~-vaVT~~~-----~~a~~~Gi~~~~~f~~~~ 307 (583)
+.|.+|.+|+..|.+..+ +++ |. ...++ ++||++. +.|++.||+ ++.++.
T Consensus 2 i~vl~Sg~Gsn~~al~~~------~~~--~~--l~~~i~~visn~~~~~~~~~A~~~gIp---~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDA------CLD--GR--VNGDVVVVVTNKPGCGGAEYARENGIP---VLVYPK 57 (207)
T ss_pred EEEEEeCCChhHHHHHHH------HHc--CC--CCeEEEEEEEeCCCChHHHHHHHhCCC---EEEecc
Confidence 578899999999886433 222 21 22344 4456543 679999999 776544
No 90
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.87 E-value=3.8e+02 Score=25.01 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=59.2
Q ss_pred chhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcC
Q 007963 196 FLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG 274 (583)
Q Consensus 196 ~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g 274 (583)
+.|...+...|+. .+.+++.+. .+.|+.+.+...+-++ -++-++|..|+|.|-+. .+.+.|++++
T Consensus 15 diGk~iv~~~l~~--------~GfeVi~LG~~v~~e~~v~aa~~~~a--diVglS~l~~~~~~~~~---~~~~~l~~~g- 80 (134)
T TIGR01501 15 AVGNKILDHAFTN--------AGFNVVNLGVLSPQEEFIKAAIETKA--DAILVSSLYGHGEIDCK---GLRQKCDEAG- 80 (134)
T ss_pred hHhHHHHHHHHHH--------CCCEEEECCCCCCHHHHHHHHHHcCC--CEEEEecccccCHHHHH---HHHHHHHHCC-
Confidence 6788888888864 467888886 7999999887766444 35667888888877654 4566666552
Q ss_pred ccccCCeEEEEcCC-----c------hHHHHcCCCCCCeee
Q 007963 275 PSAVAKHMVAVSTN-----L------TLVEKFGIDPNNAFA 304 (583)
Q Consensus 275 ~~~~~~h~vaVT~~-----~------~~a~~~Gi~~~~~f~ 304 (583)
. ....|.+-.. . +.+++.|++ ++|.
T Consensus 81 l---~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~--~vF~ 116 (134)
T TIGR01501 81 L---EGILLYVGGNLVVGKQDFPDVEKRFKEMGFD--RVFA 116 (134)
T ss_pred C---CCCEEEecCCcCcChhhhHHHHHHHHHcCCC--EEEC
Confidence 2 1223434332 1 247889987 4665
No 91
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=34.85 E-value=45 Score=32.84 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHH
Q 007963 331 SVVEKFLKGAWSIDQHFISAPY--EKNIPVLLGL 362 (583)
Q Consensus 331 d~~~~lL~GA~~md~~f~~~~~--~~N~p~llAl 362 (583)
-.+--+++=|++|.+.+.++=+ ..||..+...
T Consensus 119 Rtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 119 RTIPVMLDIARDIEELCPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHH
Confidence 3577888889999999876532 4688666554
No 92
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=34.75 E-value=2e+02 Score=29.49 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHcChHHHHHHHhc-CCCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHH
Q 007963 93 QNATLKTMDKLYQLAEAAQLNNKINRMYN-GEKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIK 165 (583)
Q Consensus 93 q~it~~~l~~L~~la~~~~l~~~~~~m~~-G~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~ 165 (583)
.+++-+.|+.|..+++...+.++-++|+- --.|. .=|.. -.|.. |...+-.....|+.+.+.....++.++
T Consensus 3 ~~~~l~~L~~f~~v~e~gs~s~AA~~L~isqpavS~~i~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~ll~~~~ 80 (305)
T CHL00180 3 LPFTLDQLRILKAIATEGSFKKAAESLYISQPAVSLQIKNLEKQLNIPLFD--RSKNKASLTEAGELLLRYGNRILALCE 80 (305)
T ss_pred CcccHHHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhCCEEEE--ecCCCceECHhHHHHHHHHHHHHHHHH
Confidence 35677788889999998888877777761 11000 00111 23333 555444455668888888888888888
Q ss_pred HHHHHHHcCCccccCCCccceEEEEccccCc
Q 007963 166 EFSETIRSGSWVGATGKVLKDVVAVGIGGSF 196 (583)
Q Consensus 166 ~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~ 196 (583)
++.+.+++.. ......|.||+..|.
T Consensus 81 ~~~~~~~~~~------~~~~g~l~ig~~~~~ 105 (305)
T CHL00180 81 ETCRALEDLK------NLQRGTLIIGASQTT 105 (305)
T ss_pred HHHHHHHHhh------cccCceEEEEEcCcc
Confidence 8887776421 113456788888663
No 93
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=34.06 E-value=93 Score=32.92 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=53.6
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeC---C---CCCCHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVS---K---TFTTAET 258 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviS---K---SGtT~ET 258 (583)
.|.+||+||- |..++-...... .. .+.|+. |+|..++.. ++.++.+ .+-. | +|+..|.
T Consensus 2 ~i~viGvGg~--G~n~v~~~~~~~------~~--~~~~iainTd~~~L~~----~~a~~ki-~iG~~~t~g~GaG~~~~~ 66 (303)
T cd02191 2 KIAVIGFGGA--GGNIVDKFLEYD------KE--GRSAVAVNTDAQDLLG----LEAENRV-LIGQARTKGLGAGANPEL 66 (303)
T ss_pred EEEEEEECch--HHHHHHHHHHcC------CC--CccEEEEECcHHHHhc----CCCCcEE-ecCCccccCCCCCCCHHH
Confidence 4789999998 788877665421 12 234443 789776654 3433333 3322 1 4666665
Q ss_pred -HHHHHHHHHHHHHhcCccccCCeEEEEcCC-------------chHHHHcCCCCCCeeecc
Q 007963 259 -MLNARTLREWISTALGPSAVAKHMVAVSTN-------------LTLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 259 -l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~-------------~~~a~~~Gi~~~~~f~~~ 306 (583)
-..+....+.+++.... ..+|.||.. .+.+++.++..-.+++.|
T Consensus 67 G~~~a~e~~~~I~~~le~----~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~P 124 (303)
T cd02191 67 GAEAAEEVQEAIDNIPVH----VDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLP 124 (303)
T ss_pred HHHHHHHHHHHHHHHHcC----CCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCC
Confidence 23344455555554321 224555532 156777766422234444
No 94
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.65 E-value=2.7e+02 Score=30.45 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhc
Q 007963 158 WKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQT 208 (583)
Q Consensus 158 ~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~ 208 (583)
.+.++++....+.++.... ..|.++++||..|||-.-+-.+.+.+++.-
T Consensus 134 ~EIv~Qv~~~~~~~~~~~~--~gg~~~~nvV~mGmGEPL~N~d~v~~al~~ 182 (372)
T PRK11194 134 SEIIGQVWRAAKIIGAAKV--TGQRPITNVVMMGMGEPLLNLNNVVPAMEI 182 (372)
T ss_pred HHHHHHHHHHHHHhhhccc--cCCcccceEEEecCCccccCHHHHHHHHHH
Confidence 3456666655555532100 013469999999999999999888887763
No 95
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.02 E-value=3.4e+02 Score=25.14 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred EEEEccccCchhHHHHHHhhhcchh--------H-HhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHH
Q 007963 187 VVAVGIGGSFLGPLFVHTALQTDLE--------A-IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 257 (583)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~--------~-~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~E 257 (583)
|+++|--|- +|-.++.+.+..... . .....+.++...|-.|++.+.+.+.. -+++|.+++-+.. +
T Consensus 1 I~V~GatG~-vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~---~d~vi~~~~~~~~--~ 74 (183)
T PF13460_consen 1 ILVFGATGF-VGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKG---ADAVIHAAGPPPK--D 74 (183)
T ss_dssp EEEETTTSH-HHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTT---SSEEEECCHSTTT--H
T ss_pred eEEECCCCh-HHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhh---cchhhhhhhhhcc--c
Confidence 456665443 577777666654210 0 00113455666678888888888874 4678877765545 2
Q ss_pred HHHHHHHHHHHHHHhcCccccCCeEEEEcCCc
Q 007963 258 TMLNARTLREWISTALGPSAVAKHMVAVSTNL 289 (583)
Q Consensus 258 Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~ 289 (583)
....+.+.+.+++. | .+|+|.+|+..
T Consensus 75 -~~~~~~~~~a~~~~-~----~~~~v~~s~~~ 100 (183)
T PF13460_consen 75 -VDAAKNIIEAAKKA-G----VKRVVYLSSAG 100 (183)
T ss_dssp -HHHHHHHHHHHHHT-T----SSEEEEEEETT
T ss_pred -cccccccccccccc-c----cccceeeeccc
Confidence 44455555555443 2 35888888643
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.56 E-value=4.2e+02 Score=25.23 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=66.8
Q ss_pred CCccceEEE--EccccCchhHHHHHHhhhcchhHHhhhCCceEEEec-cCChHhHHHHhccCCCCceEEEEeCCCCCCHH
Q 007963 181 GKVLKDVVA--VGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA-NVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 257 (583)
Q Consensus 181 g~~i~~VV~--IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~-nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~E 257 (583)
|++.+ |++ +|.=|=+-|.+.+.++|.. .+..++... ...|+++.+.. ++..--.+.|+|-+|.=.+
T Consensus 10 g~rpr-vlvak~GlDgHd~gakvia~~l~d--------~GfeVi~~g~~~tp~e~v~aA--~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 10 GARPR-VLVAKLGLDGHDRGAKVIARALAD--------AGFEVINLGLFQTPEEAVRAA--VEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CCCce-EEEeccCccccccchHHHHHHHHh--------CCceEEecCCcCCHHHHHHHH--HhcCCCEEEEEeccchHHH
Confidence 34444 444 4666888999999999985 467777775 66777775554 3455567888888888776
Q ss_pred HHHHHHHHHHHHHHhcCccccCCeEEEEcC-C-----chHHHHcCCCCCCeee
Q 007963 258 TMLNARTLREWISTALGPSAVAKHMVAVST-N-----LTLVEKFGIDPNNAFA 304 (583)
Q Consensus 258 Tl~n~~~~~~~l~~~~g~~~~~~h~vaVT~-~-----~~~a~~~Gi~~~~~f~ 304 (583)
... .+++.|++++. .++..+-. + ....++.|++ ++|.
T Consensus 79 l~~---~lve~lre~G~-----~~i~v~~GGvip~~d~~~l~~~G~~--~if~ 121 (143)
T COG2185 79 LVP---GLVEALREAGV-----EDILVVVGGVIPPGDYQELKEMGVD--RIFG 121 (143)
T ss_pred HHH---HHHHHHHHhCC-----cceEEeecCccCchhHHHHHHhCcc--eeeC
Confidence 654 55666766642 24443332 1 1467788887 3554
No 97
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=32.09 E-value=1.3e+02 Score=30.19 Aligned_cols=127 Identities=10% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHhcC-C----CCCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007963 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-E----KINSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (583)
Q Consensus 94 ~it~~~l~~L~~la~~~~l~~~~~~m~~G-~----~iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (583)
.++-..++.|..+++...+.++-++|.-- - .|..=|.+ ..|.. |.+.+-.....|+.+.+.++..++.+++
T Consensus 2 ~m~l~~L~~f~~v~e~~s~t~AA~~L~isqpavS~~I~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~ 79 (290)
T PRK10837 2 HITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFD--RVGKRLVVNEHGRLLYPRALALLEQAVE 79 (290)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHhCCCccHHHHHHHHHHHHhCCccEe--ecCCeEEECHhHHHHHHHHHHHHHHHHH
Confidence 36677888999999999888887777621 0 01111221 23333 6555555566788888888888888877
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHh
Q 007963 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (583)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l 236 (583)
+.+..+. ....|.||+..+. +...+...+..... ..++.++.+......+.+..+.
T Consensus 80 ~~~~~~~----------~~g~l~i~~~~~~-~~~~~~~~l~~~~~---~~P~i~i~v~~~~~~~~~~~l~ 135 (290)
T PRK10837 80 IEQLFRE----------DNGALRIYASSTI-GNYILPAMIARYRR---DYPQLPLELSVGNSQDVINAVL 135 (290)
T ss_pred HHHHHHh----------hCCeEEEEecchh-HhhhhHHHHHHHHH---HCCCceEEEEECCHHHHHHHHH
Confidence 6554431 2346778888763 33333333332211 1134556665433333344443
No 98
>PRK02399 hypothetical protein; Provisional
Probab=31.64 E-value=7.6e+02 Score=27.49 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=19.7
Q ss_pred EeechhhHHhhHHHHHHHhhhhCCC
Q 007963 378 ILPYSQALEKFAPHIQQVSMESNGK 402 (583)
Q Consensus 378 ilpY~~~L~~~~~wlqQL~mES~GK 402 (583)
+-.-.+..+.++.|+.+-+..+.|+
T Consensus 311 mRTt~eE~~~~g~~ia~kLn~a~gp 335 (406)
T PRK02399 311 MRTTPEENRQIGRWIAEKLNRAKGP 335 (406)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCCC
Confidence 4445677788999999988888875
No 99
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=30.35 E-value=1e+02 Score=32.41 Aligned_cols=52 Identities=27% Similarity=0.320 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEE-EcCCc---hHHHHcCCCCCCeeeccc
Q 007963 243 TTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVA-VSTNL---TLVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 243 ~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~va-VT~~~---~~a~~~Gi~~~~~f~~~~ 307 (583)
.-+.|.+|.+|++.|.+..+. .. |. ....+++ ||++. .+|+++||+ ++.++.
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~------~~--~~--~~~~i~~visn~~~~~~lA~~~gIp---~~~~~~ 145 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRW------RS--GE--LPVEIAAVISNHDDLRSLVERFGIP---FHHVPV 145 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHH------Hc--CC--CCcEEEEEEEcChhHHHHHHHhCCC---EEEecc
Confidence 357889999999999876431 11 21 2234555 45443 579999999 776654
No 100
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=30.32 E-value=2.4e+02 Score=29.10 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHhcC-CC----CCCCCC--cceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 007963 95 ATLKTMDKLYQLAEAAQLNNKINRMYNG-EK----INSTEN--RSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEF 167 (583)
Q Consensus 95 it~~~l~~L~~la~~~~l~~~~~~m~~G-~~----iN~tE~--R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~f 167 (583)
+|-+.|+.|..+++...+.++-++|.-- -. |+.=|. -..|.. |.+.+-.....|+.+.+.....+.+++++
T Consensus 2 ~~~~~L~~f~~v~e~gs~s~AA~~L~iSQpavS~~I~~LE~~lg~~Lf~--R~~r~~~lT~~G~~l~~~a~~il~~~~~~ 79 (308)
T PRK10094 2 FDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFF--RTTRSVTLTAAGEHLLSQARDWLSWLESM 79 (308)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCEEEe--eCCCceeECHhHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888887777766511 00 000011 122333 55555445567888888888889998888
Q ss_pred HHHHHcCCccccCCCccceEEEEccccC----chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHH
Q 007963 168 SETIRSGSWVGATGKVLKDVVAVGIGGS----FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 235 (583)
Q Consensus 168 a~~ir~g~~~g~~g~~i~~VV~IGIGGS----~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~ 235 (583)
.+++.+-. . +...-+.||+.-. ++-|+++.++...+ ++.++.+......+-...+
T Consensus 80 ~~~~~~~~-~-----~~~g~l~Ig~~~~~~~~~~l~~~l~~~~~~~-------P~i~l~l~~~~~~~~~~~l 138 (308)
T PRK10094 80 PSELQQVN-D-----GVERQVNIVINNLLYNPQAVAQLLAWLNERY-------PFTQFHISRQIYMGVWDSL 138 (308)
T ss_pred HHHHHHhc-C-----CCCccEEEEecccccCHHHHHHHHHHHHHhC-------CCcEEEEEeehhhhHHHHH
Confidence 88876421 1 1233566676532 23355555444332 3456666654443333443
No 101
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=30.02 E-value=1.2e+02 Score=30.08 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.8
Q ss_pred ceEEEEccccCchhH
Q 007963 185 KDVVAVGIGGSFLGP 199 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp 199 (583)
+++|.|+ ||+.+.|
T Consensus 110 ~~~v~ia-gG~GiaP 123 (238)
T cd06211 110 RPIIFIA-GGSGLSS 123 (238)
T ss_pred CCEEEEe-CCcCHHH
Confidence 5788888 8998888
No 102
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.92 E-value=1.2e+02 Score=29.81 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=35.5
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEec---cCChHhHHHHh-------ccCCCCceEEEEe
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA---NVDPIDVAKSI-------TGLNPETTLVVVV 249 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~---nvDp~~~~~~l-------~~l~~~~TL~ivi 249 (583)
-++|++|.+|+...-..+.+.+..- ...+++++ |.+++.+.+-+ +.-.|++-+++|.
T Consensus 34 ~~~iNLGfsG~~~le~~~a~~ia~~--------~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 34 LDVINLGFSGNGKLEPEVADLIAEI--------DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -EEEEEE-TCCCS--HHHHHHHHHS----------SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CCeEeeeecCccccCHHHHHHHhcC--------CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3699999999999988888888753 22677775 88888665443 4445666665555
No 103
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=29.91 E-value=50 Score=35.27 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=26.2
Q ss_pred CCceEEEec------cCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 007963 217 RGRQLRFLA------NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWIST 271 (583)
Q Consensus 217 ~~~~i~fl~------nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~ 271 (583)
.+.+..|+| ++||+.+.+.+ .+++-.++++.--|...+ +..+.++..+
T Consensus 85 ~G~~pv~~Di~~~~~~id~~~~~~~i---~~~t~ai~~~h~~G~~~d----~~~i~~~~~~ 138 (363)
T PF01041_consen 85 AGAEPVFVDIDPETLNIDPEALEKAI---TPKTKAILVVHLFGNPAD----MDAIRAIARK 138 (363)
T ss_dssp TT-EEEEE-BETTTSSB-HHHHHHHH---HTTEEEEEEE-GGGB-------HHHHHHHHHH
T ss_pred hccEEEEEeccCCcCCcCHHHHHHHh---ccCccEEEEecCCCCccc----HHHHHHHHHH
Confidence 356778875 57777777764 456667777777777663 3445554444
No 104
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.76 E-value=3.9e+02 Score=29.41 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=19.3
Q ss_pred CeEEEEcCCc---hHHHHcCCCCCCeeecccCCCCcc
Q 007963 280 KHMVAVSTNL---TLVEKFGIDPNNAFAFWDWVGGRY 313 (583)
Q Consensus 280 ~h~vaVT~~~---~~a~~~Gi~~~~~f~~~~~VGGRf 313 (583)
.++|+.+.+. ++.++.|.+ ....|..+||+.
T Consensus 330 ~kIIa~v~~~~~~~~L~~~GaD---~VIsp~~l~g~~ 363 (393)
T PRK10537 330 VKTVAAVNDSKNLEKIKRVHPD---MIFSPQLLGSEL 363 (393)
T ss_pred CcEEEEECCHHHHHHHHhcCCC---EEECHHHHHHHH
Confidence 4677766543 456677776 566666666654
No 105
>PRK05442 malate dehydrogenase; Provisional
Probab=29.56 E-value=4e+02 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHcCCCCCCeee--cccCCCCc-chhhhch
Q 007963 291 LVEKFGIDPNNAFA--FWDWVGGR-YSVCSAV 319 (583)
Q Consensus 291 ~a~~~Gi~~~~~f~--~~~~VGGR-fSv~Sav 319 (583)
+|+++|+++.++-. +|..-|+. |=+||.+
T Consensus 167 la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~ 198 (326)
T PRK05442 167 LAAKAGVPVADIKKMTVWGNHSATQYPDFRHA 198 (326)
T ss_pred HHHHhCcChHHeEEeEEEECCcCceeeccccC
Confidence 45666666555532 35555654 4447765
No 106
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=28.78 E-value=3.8e+02 Score=27.29 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcChHHHHHHHh-cCCCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 007963 95 ATLKTMDKLYQLAEAAQLNNKINRMY-NGEKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEF 167 (583)
Q Consensus 95 it~~~l~~L~~la~~~~l~~~~~~m~-~G~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~f 167 (583)
++-+.|..|..+++...+.++-+.|. +--.|. .=|.+ ..|.. |...+-.....|+.+.+.+...++.+.+.
T Consensus 2 ~~~~~L~~f~~v~e~~s~s~AA~~L~isQpavS~~I~~LE~~lg~~LF~--R~~r~~~lT~~G~~l~~~~~~~l~~~~~~ 79 (300)
T PRK11074 2 WSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE--RRHRDVELTPAGEWFVKEARSVIKKMQET 79 (300)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEE--eCCCCceECccHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877766665 111111 00221 12333 55555445566888888888888888888
Q ss_pred HHHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHH
Q 007963 168 SETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKS 235 (583)
Q Consensus 168 a~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~ 235 (583)
.+.+++-. +.....|-||+..+ ++.|.++..+...+ +..++.+......+.+..+
T Consensus 80 ~~~~~~~~------~~~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~-------p~i~i~i~~~~~~~~~~~l 137 (300)
T PRK11074 80 RRQCQQVA------NGWRGQLSIAVDNIVRPDRTRQLIVDFYRHF-------DDVELIIRQEVFNGVWDAL 137 (300)
T ss_pred HHHHHHHh------cCCCceEEEEEcCccchhHHHHHHHHHHHhC-------CCceEEEEehhhhHHHHHH
Confidence 77765411 12345778888654 34455555544332 3445655543333333433
No 107
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=27.35 E-value=4.2e+02 Score=25.47 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=47.4
Q ss_pred ceEEEEccccCchhHHH-HHHhhhcchhHHhhhCCceEEEe-ccCChH--hHHHHhccCCCCceEEEEeCCCCCCHHHHH
Q 007963 185 KDVVAVGIGGSFLGPLF-VHTALQTDLEAIECARGRQLRFL-ANVDPI--DVAKSITGLNPETTLVVVVSKTFTTAETML 260 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~-~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~--~~~~~l~~l~~~~TL~iviSKSGtT~ETl~ 260 (583)
+.+|.|| ||+.++|-. +.+.+.. ...+++++ .+-+++ ...+-|+.+. ...+.+..+.+... .
T Consensus 99 ~~~v~ia-~GtGiap~~~il~~~~~--------~~~~v~l~~~~r~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~--- 164 (211)
T cd06185 99 RRHLLIA-GGIGITPILSMARALAA--------RGADFELHYAGRSREDAAFLDELAALP-GDRVHLHFDDEGGR-L--- 164 (211)
T ss_pred CcEEEEe-ccchHhHHHHHHHHHHh--------CCCCEEEEEEeCCCcchhHHHHHhhhc-CCcEEEEECCCCCc-c---
Confidence 4688888 888888733 3333221 11233332 333333 3455566665 33444445543211 1
Q ss_pred HHHHHHHHHHHhcCccccCCeEEEEcCCc-------hHHHHcCCCCCCee
Q 007963 261 NARTLREWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNAF 303 (583)
Q Consensus 261 n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-------~~a~~~Gi~~~~~f 303 (583)
+ +.+.+.+ .. ....|.|+.+. +.+++.|++.+++.
T Consensus 165 ~---~~~~~~~-~~----~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~ 206 (211)
T cd06185 165 D---LAALLAA-PP----AGTHVYVCGPEGMMDAVRAAAAALGWPEARLH 206 (211)
T ss_pred C---HHHHhcc-CC----CCCEEEEECCHHHHHHHHHHHHHcCCChhheE
Confidence 1 2222222 11 12456777654 46788899877664
No 108
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=26.98 E-value=1.3e+02 Score=32.44 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=28.3
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCC--ceEEEeccCChHhHHHHhc
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARG--RQLRFLANVDPIDVAKSIT 237 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~--~~i~fl~nvDp~~~~~~l~ 237 (583)
.|.+||+||- |..++-..+..... .... ++..++ |+|+.++..+..
T Consensus 2 ~i~viGvGg~--G~niv~~l~~~~~~---~~~~~~~~~iav-ntD~~~L~~l~~ 49 (349)
T cd02202 2 RVLIIGVGQA--GGRIVDALNRHDKR---SGFGYCVGALAI-NTAKNDLKGLKH 49 (349)
T ss_pred EEEEEEeCCc--HHHHHHHHHHhCCC---cCCccceeEEEE-ECCHHHHHhhhc
Confidence 3789999998 88887766553210 0001 343444 689998887643
No 109
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=26.66 E-value=2.2e+02 Score=33.61 Aligned_cols=101 Identities=7% Similarity=0.115 Sum_probs=50.9
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH-HHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
.++++++|-|-++ |-|.--||+= .+ .. .+|- ..+...++ +--+..+++...+|++++..-+...+..+.
T Consensus 526 ~~~~~~lGrG~~y--~~A~EgALKl-kE----~s--yi~a-e~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~ 595 (670)
T PTZ00394 526 SSSILVLGRGYDL--ATAMEAALKV-KE----LS--YVHT-EGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAV 595 (670)
T ss_pred CCcEEEEeCCCCH--HHHHHHHHHH-HH----HH--HHHh-CcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHH
Confidence 5789999998774 3333334431 10 00 0111 11222222 222344667777777776543334455555
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcCCch-HHHHcCCCCCCeeeccc
Q 007963 263 RTLREWISTALGPSAVAKHMVAVSTNLT-LVEKFGIDPNNAFAFWD 307 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~~~~-~a~~~Gi~~~~~f~~~~ 307 (583)
+.+++ . +.++++||+... ...+.. ..++.+|.
T Consensus 596 ~evk~----~------g~~vi~I~~~~~~~~~~~~---~~~i~vp~ 628 (670)
T PTZ00394 596 QQVKA----R------GGAVVVFATEVDAELKAAA---SEIVLVPK 628 (670)
T ss_pred HHHHH----c------CCeEEEEECCCcchhcccC---CcEEECCC
Confidence 55443 2 358999987542 111111 13677885
No 110
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=26.50 E-value=2e+02 Score=30.10 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=26.0
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCC-ceEEEeccCC--hHhHHHHhccC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG-RQLRFLANVD--PIDVAKSITGL 239 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~-~~i~fl~nvD--p~~~~~~l~~l 239 (583)
++|+++|-||.. +++.-+|.. .+ .++++++-.. .+..+++.+.+
T Consensus 125 k~vlvlGaGGaa---rAi~~~l~~--------~g~~~i~i~nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 125 KTMVLLGAGGAS---TAIGAQGAI--------EGLKEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred CEEEEECCcHHH---HHHHHHHHH--------CCCCEEEEEeCCccHHHHHHHHHHHh
Confidence 479999999994 566666643 23 3566665322 33444444444
No 111
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=26.41 E-value=2.8e+02 Score=27.16 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=12.0
Q ss_pred ceEEEEccccCchhHH
Q 007963 185 KDVVAVGIGGSFLGPL 200 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~ 200 (583)
+++|.|| ||+.++|-
T Consensus 101 ~~~llia-gG~GiaP~ 115 (227)
T cd06213 101 APILCIA-GGSGLAPI 115 (227)
T ss_pred CcEEEEe-cccchhHH
Confidence 4688888 88988883
No 112
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=26.34 E-value=4.4e+02 Score=26.82 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHh-cCCCCCC----CCC--cceeeeeccCCCCcccccCCCcchHHHHHHHHHHHHHHH
Q 007963 97 LKTMDKLYQLAEAAQLNNKINRMY-NGEKINS----TEN--RSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSE 169 (583)
Q Consensus 97 ~~~l~~L~~la~~~~l~~~~~~m~-~G~~iN~----tE~--R~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~fa~ 169 (583)
-..++.|...++.-.+.++-++|. +--.|.. =|. --.|.. |...+-.....|+.+.+.++..+++++++.+
T Consensus 3 l~~L~~f~~v~~~gS~s~AA~~L~itQpavS~~i~~LE~~lg~~LF~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~~~~ 80 (305)
T PRK11151 3 IRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLE--RTSRKVLFTQAGLLLVDQARTVLREVKVLKE 80 (305)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhCCCchHHHHHHHHHHHHhCchhee--eCCCceeECccHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777766666655554 1111110 010 012222 5444444556688889999888988888877
Q ss_pred HHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHh
Q 007963 170 TIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (583)
Q Consensus 170 ~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l 236 (583)
.++... +.....+.||+-.| .+.+.++.++...+ ++.++.+..+.+..-+..+.
T Consensus 81 ~~~~~~------~~~~g~l~i~~~~~~~~~~~~~~l~~~~~~~-------P~v~i~~~~~~~~~~~~~l~ 137 (305)
T PRK11151 81 MASQQG------ETMSGPLHIGLIPTVGPYLLPHIIPMLHQTF-------PKLEMYLHEAQTHQLLAQLD 137 (305)
T ss_pred HHHHhc------ccCCceEEEEecchhHHHHHHHHHHHHHHHC-------CCcEEEEEeCCHHHHHHHHH
Confidence 665421 12345677777655 45556555544422 34566666654444444443
No 113
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=26.18 E-value=1.4e+02 Score=29.61 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=42.0
Q ss_pred ccCch--hHHHHHHhhhcchhHHhhhCCceEEEe----ccCChHhHHHHhccCCCCceEEEEeCCCC
Q 007963 193 GGSFL--GPLFVHTALQTDLEAIECARGRQLRFL----ANVDPIDVAKSITGLNPETTLVVVVSKTF 253 (583)
Q Consensus 193 GGS~L--Gp~~~~~aL~~~~~~~~~~~~~~i~fl----~nvDp~~~~~~l~~l~~~~TL~iviSKSG 253 (583)
|..+| |-+++..+|+.... ...+++.|+ .+.||.++.++++.|..++--+-|||-++
T Consensus 78 G~~SLqN~Le~A~~~L~~~p~----~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laa 140 (193)
T PF04056_consen 78 GEPSLQNGLEMARSSLKHMPS----HGSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAA 140 (193)
T ss_pred CChhHHHHHHHHHHHHhhCcc----ccceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhH
Confidence 33444 45788888874321 133566664 48999999999999999999999999865
No 114
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=25.93 E-value=2.7e+02 Score=27.31 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=49.7
Q ss_pred ceEEEEccccCchhHH-HHHHhhhcchhHHhhhCCceEEEe-ccCChHhH--HHHhccCC---CCceEEEEeCCCCCCH-
Q 007963 185 KDVVAVGIGGSFLGPL-FVHTALQTDLEAIECARGRQLRFL-ANVDPIDV--AKSITGLN---PETTLVVVVSKTFTTA- 256 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~-~~~~aL~~~~~~~~~~~~~~i~fl-~nvDp~~~--~~~l~~l~---~~~TL~iviSKSGtT~- 256 (583)
+++|.|| ||+.+.|- .+.+.+... ....+++++ .+-+++++ .+-+..+. +.-.+.++.|......
T Consensus 103 ~~~llia-gG~Gitp~~s~~~~~~~~------~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~ 175 (231)
T cd06191 103 GRYLLVA-AGSGITPLMAMIRATLQT------APESDFTLIHSARTPADMIFAQELRELADKPQRLRLLCIFTRETLDSD 175 (231)
T ss_pred CcEEEEe-cCccHhHHHHHHHHHHhc------CCCCCEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc
Confidence 5688888 88888873 333333221 112344443 45555544 23333332 2334455666543221
Q ss_pred ---HHHHHHHHHHHHHHHhcCccccCCeEEEEcCCc-------hHHHHcCCCCCCee
Q 007963 257 ---ETMLNARTLREWISTALGPSAVAKHMVAVSTNL-------TLVEKFGIDPNNAF 303 (583)
Q Consensus 257 ---ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~-------~~a~~~Gi~~~~~f 303 (583)
.+... ...+.+..-.+ .....|.|+.+. +.+++.|+++++++
T Consensus 176 ~~~~~~~~----~~~l~~~~~~~-~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~ 227 (231)
T cd06191 176 LLHGRIDG----EQSLGAALIPD-RLEREAFICGPAGMMDAVETALKELGMPPERIH 227 (231)
T ss_pred ccCCcccc----cHHHHHHhCcc-ccCCeEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 11100 01121111111 112457788764 45677899876654
No 115
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=25.74 E-value=2.5e+02 Score=25.98 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHhcCccccCCeEEEEcCCch-----HHHHcCCCCCCee
Q 007963 251 KTFTTAET--MLNARTLREWISTALGPSAVAKHMVAVSTNLT-----LVEKFGIDPNNAF 303 (583)
Q Consensus 251 KSGtT~ET--l~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~-----~a~~~Gi~~~~~f 303 (583)
|.|.|-.- -.|++.++++..+-. ......-++.||.+.+ ..+..|++++++|
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~-~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kvi 140 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIA-KYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVI 140 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHH-HHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEE
T ss_pred cccccHHHHHHHhHhHHHHHHHHHH-HhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCc
Confidence 44555533 456777777654321 1112345566665543 3455588877765
No 116
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=24.77 E-value=2.9e+02 Score=28.09 Aligned_cols=117 Identities=16% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHhcC-C----CCCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007963 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-E----KINSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (583)
Q Consensus 94 ~it~~~l~~L~~la~~~~l~~~~~~m~~G-~----~iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (583)
.+|-..++.|..+++...+.++-+.|+-- - .|..-|.+ -.|.. |...+-.....|+.+.+.++..++.+++
T Consensus 5 ~~~l~~l~~f~~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~--R~~r~l~lT~~G~~l~~~~~~~l~~~~~ 82 (297)
T PRK11139 5 LPPLNALRAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFR--RRNRSLLLTEEGQRYFLDIREIFDQLAE 82 (297)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHhCCChHHHHHHHHHHHHHhCchheE--ecCCceeECHhHHHHHHHHHHHHHHHHH
Confidence 45778889999999999988877777621 0 00000111 12222 4444444556788889999989999999
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEe
Q 007963 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFL 224 (583)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl 224 (583)
+.+.+++.. .+..|-||+..+. +...+...+..... ..+..++.+.
T Consensus 83 ~~~~~~~~~--------~~g~l~I~~~~~~-~~~~l~~~l~~f~~---~~p~i~i~l~ 128 (297)
T PRK11139 83 ATRKLRARS--------AKGALTVSLLPSF-AIQWLVPRLSSFNE---AHPDIDVRLK 128 (297)
T ss_pred HHHHHhcCC--------CCceEEEecChHH-HHHHHHHHHHHHHH---HCCCceEEEE
Confidence 988886531 2456888887553 44444444443221 1234556664
No 117
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=23.84 E-value=2.1e+02 Score=28.57 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=34.6
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCC-----------CC-ceEEEEeCC
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLN-----------PE-TTLVVVVSK 251 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~-----------~~-~TL~iviSK 251 (583)
++.||+.||||-- +.+.|...... ..+..++..-.|.++..+.+-|.... .. =--++++++
T Consensus 67 ~d~ivIAGMGG~l-----I~~ILe~~~~~--~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 67 VDTIVIAGMGGEL-----IIEILEAGPEK--LSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAER 139 (205)
T ss_dssp --EEEEEEE-HHH-----HHHHHHHTGGG--GTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEecCCHHH-----HHHHHHhhHHH--hccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEe
Confidence 6889999999973 44444432110 01123455556899999988886542 11 223667777
Q ss_pred CCCCHH
Q 007963 252 TFTTAE 257 (583)
Q Consensus 252 SGtT~E 257 (583)
++...+
T Consensus 140 ~~~~~~ 145 (205)
T PF04816_consen 140 GEEKPE 145 (205)
T ss_dssp SSS---
T ss_pred CCCCCC
Confidence 777663
No 118
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=23.78 E-value=8.9e+02 Score=25.65 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHHHHH----HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhh-CCceEEEec
Q 007963 151 KNVVPEVWKVLDKIKE----FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECA-RGRQLRFLA 225 (583)
Q Consensus 151 ~~~~~~~~~~l~~i~~----fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~-~~~~i~fl~ 225 (583)
+.+...|+..+..|.. .++.+++|. .++.+|-|-| |-.-+.+|..=... +.- +..-+-.+.
T Consensus 33 ~~v~~AV~~alp~Ia~Av~~~~~~l~~GG----------RLiY~GAGTS--GRLGvlDAsEcPPT--fgv~~e~ViglIA 98 (298)
T COG2103 33 QKVPLAVEAALPQIAAAVDIIAAALKQGG----------RLIYIGAGTS--GRLGVLDASECPPT--FGVPPELVIGLIA 98 (298)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHcCC----------eEEEEcCCcc--cchhccchhhCCCC--cCCChhHeeeeec
Confidence 3344455555555544 455566652 5899999988 44445555531100 000 011122222
Q ss_pred cC-------------ChHhHHHHhccCC-CCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEEcCCch
Q 007963 226 NV-------------DPIDVAKSITGLN-PETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLT 290 (583)
Q Consensus 226 nv-------------Dp~~~~~~l~~l~-~~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaVT~~~~ 290 (583)
.- |.+.=.+-++.++ .++-.+|-++-||+|.=.+..++++++ .+.+.|+|+-|+.
T Consensus 99 GG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~----------~Ga~Ti~iacNp~ 167 (298)
T COG2103 99 GGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQ----------RGATTIGIACNPG 167 (298)
T ss_pred CCHHHHHHhhcCccccHHHHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHh----------cCCeEEEeecCCC
Confidence 11 1112223333333 245667889999999999999999887 3467899998764
No 119
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=23.54 E-value=7.1e+02 Score=26.51 Aligned_cols=85 Identities=6% Similarity=0.065 Sum_probs=43.9
Q ss_pred cceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhH-HHHhccCCCCceEEEEeCCCCCCHHHHHHH
Q 007963 184 LKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDV-AKSITGLNPETTLVVVVSKTFTTAETMLNA 262 (583)
Q Consensus 184 i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~-~~~l~~l~~~~TL~iviSKSGtT~ETl~n~ 262 (583)
.+.+.+||-|-++ |.-+..-+|+= .+ .. .++- ..+...++ +--+..+++...+|++++ ++.|.+...
T Consensus 208 ~~~~~~lG~G~~y-~~A~~E~alKl-~E----~~--~i~a-~~~~~~Ef~HGP~~li~~~~~vi~l~~-~~~~~~~~~-- 275 (340)
T PRK11382 208 WPMIYTVAAGPLR-PLGYKEGIVTL-ME----FT--WTHG-CVIESGEFRHGPLEIVEPGVPFLFLLG-NDESRHTTE-- 275 (340)
T ss_pred CCcEEEEeCCCCH-HHHHHHHHHHH-HH----Hh--hhhc-ccccHHHhccChHHHhcCCceEEEEEc-CcchHHHHH--
Confidence 4789999998665 44333334331 10 00 1111 12343333 333455677777677776 676665332
Q ss_pred HHHHHHHHHhcCccccCCeEEEEcC
Q 007963 263 RTLREWISTALGPSAVAKHMVAVST 287 (583)
Q Consensus 263 ~~~~~~l~~~~g~~~~~~h~vaVT~ 287 (583)
.+.+.+.+. ..|+++|+.
T Consensus 276 -~~~~~l~~~------~~~v~~I~~ 293 (340)
T PRK11382 276 -RAINFVKQR------TDNVIVIDY 293 (340)
T ss_pred -HHHHHHHHC------CCeEEEEEC
Confidence 233334333 357888875
No 120
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=23.06 E-value=1.5e+02 Score=31.22 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=34.0
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCccccCCeEEEE-cCCc---hHHHHcCCCCCCeeecc
Q 007963 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAV-STNL---TLVEKFGIDPNNAFAFW 306 (583)
Q Consensus 242 ~~TL~iviSKSGtT~ETl~n~~~~~~~l~~~~g~~~~~~h~vaV-T~~~---~~a~~~Gi~~~~~f~~~ 306 (583)
..-+.|.+|++|++.+-+..+. +. |. ....+++| |++. .+|+++||+ ++.++
T Consensus 89 ~~ri~vl~Sg~g~nl~al~~~~------~~--~~--~~~~i~~visn~~~~~~lA~~~gIp---~~~~~ 144 (286)
T PRK13011 89 RPKVLIMVSKFDHCLNDLLYRW------RI--GE--LPMDIVGVVSNHPDLEPLAAWHGIP---FHHFP 144 (286)
T ss_pred CceEEEEEcCCcccHHHHHHHH------Hc--CC--CCcEEEEEEECCccHHHHHHHhCCC---EEEeC
Confidence 3458899999999988875432 11 22 23456664 5443 579999999 77664
No 121
>PLN02735 carbamoyl-phosphate synthase
Probab=22.99 E-value=5.9e+02 Score=32.05 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.7
Q ss_pred cceEEEEccccCchh--------HHHHHHhhhc
Q 007963 184 LKDVVAVGIGGSFLG--------PLFVHTALQT 208 (583)
Q Consensus 184 i~~VV~IGIGGS~LG--------p~~~~~aL~~ 208 (583)
++.|++||-|...+| ..-++.+|+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke 55 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKE 55 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHH
Confidence 789999999998775 4445566654
No 122
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=22.99 E-value=6.2e+02 Score=26.16 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=34.5
Q ss_pred eEEEEccccCc--hhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCC
Q 007963 186 DVVAVGIGGSF--LGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTT 255 (583)
Q Consensus 186 ~VV~IGIGGS~--LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT 255 (583)
+||=||.| +. -.++.+..++..-. +..+.+ .-+|+.+|..+...|+.+. ... |+-|=||.+
T Consensus 40 diIDVg~~-~~~~eE~~r~~~~v~~l~----~~~~~p-lsIDT~~~~v~eaaL~~~~-G~~--iINsIs~~~ 102 (261)
T PRK07535 40 DYLDVNAG-TAVEEEPETMEWLVETVQ----EVVDVP-LCIDSPNPAAIEAGLKVAK-GPP--LINSVSAEG 102 (261)
T ss_pred CEEEECCC-CCchhHHHHHHHHHHHHH----HhCCCC-EEEeCCCHHHHHHHHHhCC-CCC--EEEeCCCCC
Confidence 58888865 32 12333333433221 112333 4789999999999998764 334 455555654
No 123
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.90 E-value=2.5e+02 Score=25.22 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=52.6
Q ss_pred hhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCc-eEEEEeCC-CCCCHHHHHHHHHHHHHHHHhcC
Q 007963 197 LGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPET-TLVVVVSK-TFTTAETMLNARTLREWISTALG 274 (583)
Q Consensus 197 LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~-TL~iviSK-SGtT~ETl~n~~~~~~~l~~~~g 274 (583)
-|..-+.+.|+ ..+.++.+++|.++..+...++.+.... .=.+++|. .|..-.--..++.+.+ ++|
T Consensus 80 ~~~~~~L~~l~--------~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~----~~~ 147 (176)
T PF13419_consen 80 PGVRELLERLK--------AKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE----KLG 147 (176)
T ss_dssp TTHHHHHHHHH--------HTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH----HHT
T ss_pred hhhhhhhhhcc--------cccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHH----HcC
Confidence 34444555554 2467999999999999999998876541 11344443 2322111222333333 233
Q ss_pred ccccCCeEEEEcCCc---hHHHHcCCC
Q 007963 275 PSAVAKHMVAVSTNL---TLVEKFGID 298 (583)
Q Consensus 275 ~~~~~~h~vaVT~~~---~~a~~~Gi~ 298 (583)
-. .++++.|.+.. +.|++.|+.
T Consensus 148 ~~--p~~~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 148 IP--PEEILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp SS--GGGEEEEESSHHHHHHHHHTTSE
T ss_pred CC--cceEEEEeCCHHHHHHHHHcCCe
Confidence 22 35789999865 689999986
No 124
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.79 E-value=5.3e+02 Score=25.82 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=47.1
Q ss_pred eEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 007963 186 DVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265 (583)
Q Consensus 186 ~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l~~~~TL~iviSKSGtT~ETl~n~~~~ 265 (583)
.+++||.|= +|..++ +.|.. .+-.+..++ .|++.+.+.+.. ...+.+++. +++..+++.
T Consensus 2 ~iiIiG~G~--vG~~va-~~L~~--------~g~~Vv~Id-~d~~~~~~~~~~--~~~~~~v~g--d~t~~~~L~----- 60 (225)
T COG0569 2 KIIIIGAGR--VGRSVA-RELSE--------EGHNVVLID-RDEERVEEFLAD--ELDTHVVIG--DATDEDVLE----- 60 (225)
T ss_pred EEEEECCcH--HHHHHH-HHHHh--------CCCceEEEE-cCHHHHHHHhhh--hcceEEEEe--cCCCHHHHH-----
Confidence 578888772 343333 33332 234667776 577777775541 123444444 445555543
Q ss_pred HHHHHHhcCccccCCeEEEEcCCc-------hHHHH-cCCC
Q 007963 266 REWISTALGPSAVAKHMVAVSTNL-------TLVEK-FGID 298 (583)
Q Consensus 266 ~~~l~~~~g~~~~~~h~vaVT~~~-------~~a~~-~Gi~ 298 (583)
+. |-+. ...+||+|.+. .+|.+ +|++
T Consensus 61 -----~a-gi~~-aD~vva~t~~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 61 -----EA-GIDD-ADAVVAATGNDEVNSVLALLALKEFGVP 94 (225)
T ss_pred -----hc-CCCc-CCEEEEeeCCCHHHHHHHHHHHHhcCCC
Confidence 22 4332 46889999864 24544 7887
No 125
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.72 E-value=1.3e+02 Score=32.56 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhh
Q 007963 158 WKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ 207 (583)
Q Consensus 158 ~~~l~~i~~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~ 207 (583)
.+.++++....+.+.+.. ++++++||+.|||..-+.-+.+..|+.
T Consensus 132 ~EIv~Qv~~~~~~~~~~~-----~~~i~NVV~MGMGEPl~N~dnV~~a~~ 176 (349)
T COG0820 132 GEIVEQVLLAAKALGEDF-----GRRISNVVFMGMGEPLLNLDNVVKALE 176 (349)
T ss_pred HHHHHHHHHHHHhcCccc-----cceeeeEEEecCCchhhhHHHHHHHHH
Confidence 345666666665554421 568999999999999999888887775
No 126
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=22.68 E-value=69 Score=26.05 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEcCCc--hHHHHcCCCCCCeeecccCCCCcchh
Q 007963 282 MVAVSTNL--TLVEKFGIDPNNAFAFWDWVGGRYSV 315 (583)
Q Consensus 282 ~vaVT~~~--~~a~~~Gi~~~~~f~~~~~VGGRfSv 315 (583)
+|+|+++. +.|++.|+. +.|||.+
T Consensus 33 ~viI~dPe~S~IAk~l~i~----------~pG~YAl 58 (61)
T PRK08351 33 LVIIIDVENSRIAKKLGAK----------VPGKYAI 58 (61)
T ss_pred EEEEeCCcHhHHHHHhCCC----------CCCeEEE
Confidence 67788754 799999997 6788864
No 127
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.46 E-value=2.4e+02 Score=29.65 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=9.6
Q ss_pred EEEEccccCchhHHHHHH
Q 007963 187 VVAVGIGGSFLGPLFVHT 204 (583)
Q Consensus 187 VV~IGIGGS~LGp~~~~~ 204 (583)
|.+||.|. .|.-+++.
T Consensus 3 I~IIGaG~--VG~~~a~~ 18 (308)
T cd05292 3 VAIVGAGF--VGSTTAYA 18 (308)
T ss_pred EEEECCCH--HHHHHHHH
Confidence 77888763 35544443
No 128
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=22.35 E-value=2.4e+02 Score=29.44 Aligned_cols=43 Identities=37% Similarity=0.468 Sum_probs=27.1
Q ss_pred ceEEEEccccCchhHHHHHHhhhcchhHHhhhCCc-eEEEeccCChHhHHHHhccC
Q 007963 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGR-QLRFLANVDPIDVAKSITGL 239 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~-~i~fl~nvDp~~~~~~l~~l 239 (583)
+.|++||-||.. +++..+|.. .+. +++++ |.|+.....+.+.+
T Consensus 128 k~vlIlGaGGaa---raia~aL~~--------~G~~~I~I~-nR~~~ka~~la~~l 171 (284)
T PRK12549 128 ERVVQLGAGGAG---AAVAHALLT--------LGVERLTIF-DVDPARAAALADEL 171 (284)
T ss_pred CEEEEECCcHHH---HHHHHHHHH--------cCCCEEEEE-CCCHHHHHHHHHHH
Confidence 579999999964 556566653 233 55555 46666666555444
No 129
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=22.19 E-value=7.5e+02 Score=25.04 Aligned_cols=130 Identities=11% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHhcC-CCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007963 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-EKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (583)
Q Consensus 94 ~it~~~l~~L~~la~~~~l~~~~~~m~~G-~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (583)
.+|-+-|..|..+++.-.+.++-++|.-- -.|. .=|+. -.|.. |.+.+-.....|+...+.+...+..+++
T Consensus 4 ~~~l~~L~~f~~v~~~gs~s~AA~~L~isQ~avS~~i~~LE~~lG~~LF~--R~~r~~~lT~~G~~l~~~a~~~l~~~~~ 81 (302)
T PRK09791 4 QVKIHQIRAFVEVARQGSIRGASRMLNMSQPALTKSIQELEEGLAAQLFF--RRSKGVTLTDAGESFYQHASLILEELRA 81 (302)
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeEEE--EcCCCceECccHHHHHHHHHHHHHHHHH
Confidence 57778888888888888887777766511 0000 00221 12333 6555555567789999999999999999
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHh
Q 007963 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSI 236 (583)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l 236 (583)
+.+.+++.. ......|.||+..+. +...+...+..... ..++.++.+.. .++.++.+.+
T Consensus 82 ~~~~~~~~~------~~~~g~l~I~~~~~~-~~~~l~~~l~~~~~---~~p~i~~~~~~-~~~~~~~~~l 140 (302)
T PRK09791 82 AQEDIRQRQ------GQLAGQINIGMGASI-ARSLMPAVISRFHQ---QHPQVKVRIME-GQLVSMINEL 140 (302)
T ss_pred HHHHHHHhh------cccceEEEEEechHH-HHhhhHHHHHHHHH---HCCCeEEEEEe-CChHHHHHHH
Confidence 988876521 123457788888763 33333333333221 11334455443 3444554444
No 130
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=22.14 E-value=3.2e+02 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.6
Q ss_pred ceEEEEccccCchhHHHHHHhh
Q 007963 185 KDVVAVGIGGSFLGPLFVHTAL 206 (583)
Q Consensus 185 ~~VV~IGIGGS~LGp~~~~~aL 206 (583)
.+|+++|.|| +|.+++..-.
T Consensus 20 s~VlviG~gg--lGsevak~L~ 39 (198)
T cd01485 20 AKVLIIGAGA--LGAEIAKNLV 39 (198)
T ss_pred CcEEEECCCH--HHHHHHHHHH
Confidence 4699999998 7888776543
No 131
>PRK10082 cell density-dependent motility repressor; Provisional
Probab=21.91 E-value=3.7e+02 Score=27.42 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHcChHHHHHHHhcC-CCCC----CCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHH
Q 007963 93 QNATLKTMDKLYQLAEAAQLNNKINRMYNG-EKIN----STENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIK 165 (583)
Q Consensus 93 q~it~~~l~~L~~la~~~~l~~~~~~m~~G-~~iN----~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~ 165 (583)
+.+|-+.++.|...++.-.+.++-++|+-- -.|+ .=|.+ -+|.. |...+-.....|+.+.+.++..++.++
T Consensus 9 ~~m~~~~l~~F~av~e~gS~t~AA~~L~iSQpavS~~I~~LE~~lG~~Lf~--R~~r~~~lT~~G~~l~~~a~~~l~~~e 86 (303)
T PRK10082 9 HNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFN--RQVTPLQLSEQGKIFHSQIRHLLQQLE 86 (303)
T ss_pred cccchHHHHHHHHHHhcCCHHHHHHHhCCChHHHHHHHHHHHHHcCCEEEE--ecCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999988887777621 1111 00221 12322 544444455668888888888889999
Q ss_pred HHHHHHHcCCccccCCCccceEEEEccccCchhHHHHHHhhh
Q 007963 166 EFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ 207 (583)
Q Consensus 166 ~fa~~ir~g~~~g~~g~~i~~VV~IGIGGS~LGp~~~~~aL~ 207 (583)
+..+.+++.. ...+..+-||+..+ ++...+...+.
T Consensus 87 ~~~~~~~~~~------~~~~g~lrIg~~~~-~~~~~l~~~l~ 121 (303)
T PRK10082 87 SNLAELRGGS------DYAQRKIKIAAAHS-LSLGLLPSIIS 121 (303)
T ss_pred HHHHHHHhhc------cccCceEEEEecch-hHHHHhHHHHH
Confidence 9888886532 11334678888654 35444444444
No 132
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=21.66 E-value=7.5e+02 Score=24.89 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHcChHHHHHHHhcC-CC----CCCCCCc--ceeeeeccCCCCcccccCCCcchHHHHHHHHHHHH
Q 007963 94 NATLKTMDKLYQLAEAAQLNNKINRMYNG-EK----INSTENR--SVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166 (583)
Q Consensus 94 ~it~~~l~~L~~la~~~~l~~~~~~m~~G-~~----iN~tE~R--~vlH~aLR~~~~~~~~~~g~~~~~~~~~~l~~i~~ 166 (583)
+++-+.+..|+.+++...+.++-+.|+-- -. |..=|.+ -.|.. |...+-.....|+.+.+.++..++.+++
T Consensus 2 ~m~l~~l~~f~~v~~~gS~s~AA~~L~isq~avS~~I~~LE~~lg~~LF~--R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 79 (300)
T TIGR02424 2 RIKFRHLQCFVEVARQGSVKRAAEALHITQPAVSKTLRELEEILGTPLFE--RDRRGIRLTRYGELFLRHAGASLAALRQ 79 (300)
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHhCCChHHHHHHHHHHHHHhCCeEEE--EcCCCccccHhHHHHHHHHHHHHHHHHH
Confidence 46677888899999988888777777611 00 0011221 12222 5555544556788888888888888888
Q ss_pred HHHHHHcCCccccCCCccceEEEEccccC---chhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHH
Q 007963 167 FSETIRSGSWVGATGKVLKDVVAVGIGGS---FLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAK 234 (583)
Q Consensus 167 fa~~ir~g~~~g~~g~~i~~VV~IGIGGS---~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~ 234 (583)
+.+.+++-. . .....+.||+..+ .+-|.++......+ +..++.+... +..++.+
T Consensus 80 ~~~~~~~~~-~-----~~~~~l~I~~~~~~~~~~~~~~l~~~~~~~-------P~~~i~~~~~-~~~~~~~ 136 (300)
T TIGR02424 80 GVASLSQLG-E-----GEGPTVRIGALPTVAARLMPEVVKRFLARA-------PRLRVRIMTG-PNAYLLD 136 (300)
T ss_pred HHHHHHHhc-C-----CCCceEEEecccHHHHhhhHHHHHHHHHhC-------CCcEEEEEeC-chHHHHH
Confidence 877776521 1 1344678888754 33344444443322 3345555543 4444433
No 133
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=21.30 E-value=4.1e+02 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred ccCCeEEecccCCCCHHHHHHHHHHHHHcC
Q 007963 82 EFDGILLDYSRQNATLKTMDKLYQLAEAAQ 111 (583)
Q Consensus 82 ~~~gl~lD~Skq~it~~~l~~L~~la~~~~ 111 (583)
..+.+.+=.|...=|.+++++ ++.|+++|
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a-~~~ak~~g 363 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAA-LRLAKELG 363 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHH-HHHHHHCC
Confidence 445688888888888888887 55666655
No 134
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=21.10 E-value=4.2e+02 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.082 Sum_probs=19.0
Q ss_pred hHHHHcCCCCCCeeecccCCCCcchhhhchh
Q 007963 290 TLVEKFGIDPNNAFAFWDWVGGRYSVCSAVG 320 (583)
Q Consensus 290 ~~a~~~Gi~~~~~f~~~~~VGGRfSv~SavG 320 (583)
+.|++.|+. ..- -+++.|+|+.-|+--
T Consensus 249 ~~Ak~~G~~---a~~-~~glPg~~ap~ta~~ 275 (287)
T TIGR02853 249 EYAKKRGIK---ALL-APGLPGIVAPKTAGK 275 (287)
T ss_pred HHHHHCCCE---EEE-eCCCCcccCchhHHH
Confidence 689999987 332 366788887766655
No 135
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=20.62 E-value=3e+02 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=15.7
Q ss_pred eEEEEcCCc-------hHHHHcCCCCCCee
Q 007963 281 HMVAVSTNL-------TLVEKFGIDPNNAF 303 (583)
Q Consensus 281 h~vaVT~~~-------~~a~~~Gi~~~~~f 303 (583)
..|.|+.+. +.+++.|+++++++
T Consensus 198 ~~v~icGp~~m~~~~~~~l~~~gv~~~~i~ 227 (231)
T cd06215 198 RTVFVCGPAGFMKAVKSLLAELGFPMSRFH 227 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 346678754 45678899876664
No 136
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=20.14 E-value=1.5e+02 Score=31.49 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=30.7
Q ss_pred EEEEccccCchhHHHHHHhhhcchhHHhhhCCceEEEeccCChHhHHHHhccC
Q 007963 187 VVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGL 239 (583)
Q Consensus 187 VV~IGIGGS~LGp~~~~~aL~~~~~~~~~~~~~~i~fl~nvDp~~~~~~l~~l 239 (583)
|+|.|-||| +|.+++.+.+... ..+++.+| .|...+.++-..+
T Consensus 1 VLVTGa~GS-IGseL~rql~~~~--------p~~lil~d-~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGS-IGSELVRQLLRYG--------PKKLILFD-RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSH-HHHHHHHHHHCCB---------SEEEEEE-S-HHHHHHHHHHC
T ss_pred CEEEccccH-HHHHHHHHHHhcC--------CCeEEEeC-CChhHHHHHHHHH
Confidence 678999999 6999999887642 13677777 4666666666665
Done!