RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007963
(583 letters)
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 819 bits (2117), Expect = 0.0
Identities = 293/560 (52%), Positives = 373/560 (66%), Gaps = 31/560 (5%)
Query: 41 SSTLICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFDGILLDYSRQNATLKT 99
+ T + L ++++K HLRDL+ + + G+ LD+SRQ TL+T
Sbjct: 6 APTQLEQCASHGKLLQEKKKLEKLHLRDLLKDEARNDLLIRSTDQGVYLDFSRQKITLET 65
Query: 100 MDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDA-AINSDGKNVVPEVW 158
+ L LA Q+ + RM++GEKIN TENR+VLHVALR P + ++ DGKNV+ EV
Sbjct: 66 LQHLVNLAHERQVPAMVKRMFSGEKINQTENRAVLHVALRMPEGSEPVHVDGKNVLDEVH 125
Query: 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG 218
VL +I+ FSE +RSG G TGK L +V+++GIGGS+LG FVH AL + A E A G
Sbjct: 126 AVLRRIRVFSEKVRSGEIRGHTGKKLVNVISIGIGGSYLGTEFVHLALAAEGYAAEKAHG 185
Query: 219 RQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG--PS 276
RQ+ FLANVDP+DV + G +PE TLVVV+SKTFTTAETM+NAR++R+W
Sbjct: 186 RQIHFLANVDPVDVWLAERGFDPEETLVVVISKTFTTAETMMNARSVRDWYLHHYKGDER 245
Query: 277 AVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKF 336
A+ H AVSTNL KFGI + F FWDWVGGRYSV SAVG+LPL+LQYG+ V ++F
Sbjct: 246 ALGAHFCAVSTNLDGTSKFGIQSDRVFGFWDWVGGRYSVTSAVGILPLALQYGYDVAQEF 305
Query: 337 LKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVS 396
L GA ++D HF +A N+P+L+GL+S+WN +F G+ A+LPY+QAL +F HIQQ++
Sbjct: 306 LNGAHAMDVHFKTAELADNLPMLMGLISVWNATFFGYSNVAVLPYAQALLRFPAHIQQLT 365
Query: 397 MESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVY 456
MESNGK V++DG L F+ GEI FGEPGTNGQHSFYQLIHQGRVIP +FIG KSQ+ +
Sbjct: 366 MESNGKRVTMDGKTLDFDVGEIFFGEPGTNGQHSFYQLIHQGRVIPAEFIGFCKSQRAIK 425
Query: 457 LKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHK--------------- 501
LK E VSNHDELMSNFFAQPDALA GKTPE+L+KE + L+PHK
Sbjct: 426 LKEEPVSNHDELMSNFFAQPDALAFGKTPEELRKEGIPEKLVPHKTFPGDRPSCMLLFPE 485
Query: 502 --------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREP--- 550
LLA+YEHR+AVEG++WGINSFDQWGVELGK LA VR L R + P
Sbjct: 486 ISPFHIGQLLALYEHRVAVEGWLWGINSFDQWGVELGKVLAKGVRGILQKRREGKAPHES 545
Query: 551 -IEGFNFSTTTLLTRYLEAS 569
ST +L Y++ S
Sbjct: 546 GQSELCSSTRKILEHYVQQS 565
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 811 bits (2098), Expect = 0.0
Identities = 262/580 (45%), Positives = 358/580 (61%), Gaps = 51/580 (8%)
Query: 39 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLK 98
+ I + + +K+L E K L+D ++D +R +S++ +F +D SRQ + K
Sbjct: 17 QGMNMEITNLKSYKELVTLSAEEKTKDLKDYLNDKNRSESLIKKFKNFYMDLSRQRYSEK 76
Query: 99 TMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDA----AINSDGKNVV 154
T++KL + AE +L K+ + + GEK+N TENRSVLH ALR P + I D KNV+
Sbjct: 77 TLNKLVEYAEEVELKKKVEKTFMGEKVNMTENRSVLHTALRIPIEKINTHKIIIDNKNVL 136
Query: 155 PEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIE 214
+V VL KI+++S+ IR+G K+V+ +GIGGS+LG FV+ A++ +E
Sbjct: 137 EDVHGVLKKIEKYSDDIRNGVIKTCKNTKFKNVICIGIGGSYLGTEFVYEAMKYYYYNME 196
Query: 215 CARGRQ-----------------LRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAE 257
+ + +RFLANVDP DV ++I L+ TLV+++SKTFTTAE
Sbjct: 197 LNKNEKDQVNNFNNNYDQDNVFNVRFLANVDPNDVNRAIQNLDQYDTLVIIISKTFTTAE 256
Query: 258 TMLNARTLREWISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVC 316
TMLNAR++++W+S + ++KHMVAVSTNL L ++FGI +N F FWDWVGGR+SV
Sbjct: 257 TMLNARSIKKWLSLKIKDDENLSKHMVAVSTNLKLTDEFGISRDNVFEFWDWVGGRFSVT 316
Query: 317 SAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPAR 376
S+VG+LPLS+ +G+ + FL G +D+HF+ A ++NIPVLL L S +N F +
Sbjct: 317 SSVGILPLSIAFGYKNMRNFLNGCHDMDEHFLHADLKENIPVLLALTSFYNSHFFDYKNV 376
Query: 377 AILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIH 436
AILPY Q L KF+ HIQQ+SMESNGK V + P+ + ++ FGEPGTNGQHSFYQLIH
Sbjct: 377 AILPYFQNLLKFSAHIQQLSMESNGKSVDRNNQPIHYNTCQVYFGEPGTNGQHSFYQLIH 436
Query: 437 QGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA-- 494
QG+VIP + IG S P+ EVVSNHDELM+NFFAQ DALA+GKT EQ+++EN
Sbjct: 437 QGQVIPVELIGFKHSHFPIKFDKEVVSNHDELMTNFFAQADALAIGKTYEQVKEENEKNK 496
Query: 495 --PHLIPHK-----------------------LLAIYEHRIAVEGFIWGINSFDQWGVEL 529
P L+ HK LL++YE RI EGF+ INSFDQWGVEL
Sbjct: 497 MSPELLTHKVFNGNRPSTLLLFDELNFYTCGLLLSLYESRIVAEGFLLNINSFDQWGVEL 556
Query: 530 GKSLATQVRKQLHASRM--KREPIEGFNFSTTTLLTRYLE 567
GK LA +VR + +R K + FN ST LL YL
Sbjct: 557 GKVLAKEVRNYFNDTRNQKKSDNTYNFNESTKILLNYYLS 596
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 802 bits (2073), Expect = 0.0
Identities = 242/548 (44%), Positives = 327/548 (59%), Gaps = 34/548 (6%)
Query: 45 ICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFDGILLDYSRQNATLKTMDKL 103
I T W L H +I THLR D R + + V + +DYS+ T +T+ L
Sbjct: 3 ITATPAWDALARHHDQIGNTHLRQFFADDPGRGRELTVSVGDLYIDYSKHRVTRETLALL 62
Query: 104 YQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDK 163
LA A L + ++M+ G IN++E+R+VLH ALR PRDA + DG++VV +V VLD
Sbjct: 63 IDLARTAHLEERRDQMFAGVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLDA 122
Query: 164 IKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRF 223
+ F++ +RSG W GATGK + VV +GIGGS LGP+ V+ AL+ G RF
Sbjct: 123 MGAFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGPVMVYQALRH-----YADAGISARF 177
Query: 224 LANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMV 283
++NVDP D+ ++ L+P TTL +V SKTF+T ET+ NA R W++ ALG +AV++H V
Sbjct: 178 VSNVDPADLIATLADLDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFV 237
Query: 284 AVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSI 343
AVSTN LV+ FGI+ +N F FWDWVGGRYSV SA+G L L G FL G I
Sbjct: 238 AVSTNKRLVDDFGINTDNMFGFWDWVGGRYSVDSAIG-LSLMTVIGRDAFADFLAGFHII 296
Query: 344 DQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKG 403
D+HF +AP E N PVLLGL+ +W +F G +R +LPYS L +F ++QQ++MESNGK
Sbjct: 297 DRHFATAPLESNAPVLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKS 356
Query: 404 VSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVV 462
DG P+ + GEI +GEPGTNGQH+FYQL+HQG R++P DFIG + +
Sbjct: 357 TRADGSPVSADTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPLDDLPTAEGTG 416
Query: 463 SNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHK--------------------- 501
S HD LMSNFFAQ LA GKT E++ + H++ HK
Sbjct: 417 SMHDLLMSNFFAQTQVLAFGKTAEEIAADGTPAHVVAHKVMPGNRPSTSILASRLTPSVL 476
Query: 502 --LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTT 559
L+A+YEH++ EG +WGI+SFDQWGVELGK+ A + + + P + ST
Sbjct: 477 GQLIALYEHQVFTEGVVWGIDSFDQWGVELGKTQAKALLPVITGA---GSPPPQSDSSTD 533
Query: 560 TLLTRYLE 567
L+ RY
Sbjct: 534 GLVRRYRT 541
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 784 bits (2027), Expect = 0.0
Identities = 242/571 (42%), Positives = 325/571 (56%), Gaps = 52/571 (9%)
Query: 30 LGFSFRILQMASSTLICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEF-DGIL 87
F M + T+ WK L H + + L+ L D++R F IL
Sbjct: 16 ENLYFGSNAMLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDIL 75
Query: 88 LDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAIN 147
+DYS+ +TM L+ LA+ L + I M+ GE IN TE+R+VLH ALR ++ +
Sbjct: 76 VDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVL 135
Query: 148 SDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQ 207
+G++V+P V VL K+K FSE + G W G TGK + DVV +GIGGS LGP V AL
Sbjct: 136 VNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALV 195
Query: 208 TDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLRE 267
+ F++NVD +A+++ ++PETTL +V SKTFTT ETM NA T R+
Sbjct: 196 P------YKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARD 249
Query: 268 WISTALG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSL 326
W A G + VAKH A+STN V +FGID +N F FWDWVGGRYS+ SA+G L + L
Sbjct: 250 WFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIG-LSIIL 308
Query: 327 QYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALE 386
G+ + L GA +DQHF++ P+E NIPV+L L+ IW +F G + AILPY Q L
Sbjct: 309 SIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLH 368
Query: 387 KFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDF 445
+FA + QQ +MESNGK V +G P+ ++ G I +GEPGTNGQH+FYQLIHQG ++IPCDF
Sbjct: 369 RFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDF 428
Query: 446 IGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKE--------NVAPHL 497
I S V +H +LMSNFFAQ +ALA GK+ + +Q E L
Sbjct: 429 IAPAVSHNL------VGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAAL 482
Query: 498 IPHK-----------------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 534
+P K L+A+YEH+I V+G IW I SFDQWGVELGK LA
Sbjct: 483 VPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLA 542
Query: 535 TQVRKQLHASRMKREPIEGFNFSTTTLLTRY 565
Q+ +L S + + ST L+ +
Sbjct: 543 NQILPELADS----AAVTSHDSSTNGLINAF 569
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 779 bits (2014), Expect = 0.0
Identities = 195/553 (35%), Positives = 303/553 (54%), Gaps = 48/553 (8%)
Query: 47 DTEPWKDLKNHVQEIKKTHLRDL-MSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQ 105
+ + D + + +L++ D R + ++ I DYS+ + L +
Sbjct: 2 NAMLFCDDSKKYLKEQNINLKNEFDKDDKRVEKFSLKHQNIYFDYSKNLINDYILKSLLE 61
Query: 106 LAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIK 165
AE + L +KI +M+NG KINSTE+R+VLH ALR + DG+++ EV K ++K
Sbjct: 62 SAEKSSLKDKIKQMFNGAKINSTEHRAVLHTALRDLSSTPLIVDGQDIRQEVTKEKQRVK 121
Query: 166 EFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA 225
E E + SG W G +GK + D+V +GIGGS LGP V ALQ ++ F++
Sbjct: 122 ELVEKVVSGRWRGFSGKKITDIVNIGIGGSDLGPKMVVRALQP-----YHCTDLKVHFVS 176
Query: 226 NVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSAVAKHMVA 284
NVD + +++ ++PETTL+++ SK+F+T ET+LN+ + REW+ AVA H VA
Sbjct: 177 NVDADSLLQALHVVDPETTLLIIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVA 236
Query: 285 VSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSID 344
+S+ L V++FGID + + WDWVGGRYS+ S++G + ++ G+ EK L GA+S+D
Sbjct: 237 ISSKLDKVKEFGIDLEHCYKMWDWVGGRYSLWSSIG-MSIAFAIGYDNFEKLLAGAYSVD 295
Query: 345 QHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGV 404
+HF + KNIPV++ LL+ + ++A+LPY + L F ++QQ MESNGK V
Sbjct: 296 KHFKETEFSKNIPVIMALLASYYSCTYNSQSQALLPYDERLCYFVDYLQQADMESNGKSV 355
Query: 405 SIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVS 463
+I G + ++ G + +G GTNGQH+F+QL+HQG IP DFI + S +
Sbjct: 356 NIAGETVNYQTGVVLWGGVGTNGQHAFHQLLHQGNIFIPVDFIAIATSHHN------YDN 409
Query: 464 NHDELMSNFFAQPDALAVGKTPEQLQKE--------NVAPHLIPHK-------------- 501
+ L++N FAQ AL G++ + + E A L HK
Sbjct: 410 HQQALLANCFAQSQALMFGQSYDMVYNELLKSGLNETQAKELAAHKVIPGNRPSTTILLD 469
Query: 502 ---------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIE 552
L+A+YEH+I V+G +W INS+DQWGVELGK L + K ++ + +
Sbjct: 470 ELSPYSLGALIALYEHKIFVQGVLWDINSYDQWGVELGKKLGKNILKAMNDD--SSDEYQ 527
Query: 553 GFNFSTTTLLTRY 565
+ ST L+ +
Sbjct: 528 NLDDSTRQLIAKV 540
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase
phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella
melitensis BV}
Length = 553
Score = 776 bits (2005), Expect = 0.0
Identities = 221/553 (39%), Positives = 315/553 (56%), Gaps = 49/553 (8%)
Query: 48 TEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQL 106
LK H E +R +D R + D +L D+S+ +TM L +L
Sbjct: 13 EATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSKCRVNDETMALLKEL 72
Query: 107 AEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKE 166
A AA + + M+ GE IN+TE+R+VLHVALR + DG NV+P+V VLD++
Sbjct: 73 AVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLPDVKHVLDRMAA 132
Query: 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN 226
F++ IRSG+ GATG+ + D+V +GIGGS LGP+ AL + F++N
Sbjct: 133 FADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPY------HDEPRAHFVSN 186
Query: 227 VDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVS 286
+D +A +++ L+P +TL++V SKTFTT ETM NA+T R+W++ LG +AV H AVS
Sbjct: 187 IDGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVS 246
Query: 287 TNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQH 346
T L V FGI + F FWDWVGGRYSV SA+G LP+ + G KFL GA ++D H
Sbjct: 247 TALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIG-LPVMIAVGPDNFRKFLAGAHAMDVH 305
Query: 347 FISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSI 406
F AP EKN+PV+LGL+ W+ + G+ +RAI+PY Q L + ++QQ+ MESNGK V++
Sbjct: 306 FRDAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKSVTL 365
Query: 407 DGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNH 465
DG P+ G + +GEPGTNGQH+F+QL+HQG IP +FI K +P + H
Sbjct: 366 DGKPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPT-----LDHQH 420
Query: 466 DELMSNFFAQPDALAVGKTPEQLQKE--------NVAPHLIPHK---------------- 501
+ LM+N AQ +AL G+T ++ + + + + PH+
Sbjct: 421 EMLMANCLAQSEALMKGRTLDEARAQLQAKNLPASQVERIAPHRVFSGNRPSLTLIHDML 480
Query: 502 -------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGF 554
L+A+YEHR+ VE I+GIN+FDQWGVELGK LAT++ + E G
Sbjct: 481 DPYTLGRLIALYEHRVFVEAQIFGINAFDQWGVELGKELATELLPVVSGK----EGASGR 536
Query: 555 NFSTTTLLTRYLE 567
+ ST L+
Sbjct: 537 DASTQGLVAHLHA 549
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Length = 557
Score = 772 bits (1995), Expect = 0.0
Identities = 243/568 (42%), Positives = 340/568 (59%), Gaps = 56/568 (9%)
Query: 39 MASSTLICDTEPWKDL-KNHVQEIKKTHLRDLM-SDTDRCQSMMVEFD----GILLDYSR 92
MA+ T ++ L + H LR+L +D +R + + + IL+DYS+
Sbjct: 1 MAALT---RNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNHGHILVDYSK 57
Query: 93 QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKN 152
+ + M L +LA++ + + M++G KIN TE+R+VLHVALR + I DGK+
Sbjct: 58 NLVSKEVMQMLVELAKSRGVEAARDNMFSGSKINYTEDRAVLHVALRNRSNTPIKVDGKD 117
Query: 153 VVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEA 212
V+PEV +VLDK+K F + +RSG W G TGK + D++ +GIGGS LGPL V AL+
Sbjct: 118 VMPEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKP---- 173
Query: 213 IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 272
G ++ F++N+D +AK++ L+PET+L ++ SKTFTT ET+ NA T +EW A
Sbjct: 174 -YSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEA 232
Query: 273 LG-PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFS 331
PSAVAKH VA+STN V++FGIDP N F FWDWVGGRYS+ SA+G L ++L GF
Sbjct: 233 AKDPSAVAKHFVALSTNTAKVKEFGIDPQNMFEFWDWVGGRYSLWSAIG-LSIALHVGFD 291
Query: 332 VVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPH 391
E+ L GA +DQHF+ P EKN PVLL LL IW ++ G A+LPY Q + +FA +
Sbjct: 292 HFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAY 351
Query: 392 IQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVK 450
QQ MESNGK ++ G + + G I +GEPGTNGQH+FYQLIHQG ++IPCDF+ V+
Sbjct: 352 FQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQ 411
Query: 451 SQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAP--------HLIPHK- 501
+Q P+ +H L++NF AQ +AL GK PE+ +KE A L+PHK
Sbjct: 412 TQHPI----RKGLHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKV 467
Query: 502 ----------------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 539
L+A+YEH+I V+G +W INSFDQWGVELGK LA ++
Sbjct: 468 FEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEP 527
Query: 540 QLHASRMKREPIEGFNFSTTTLLTRYLE 567
+L S + + ST L++ +
Sbjct: 528 ELEGS----SAVTSHDSSTNGLISFIKQ 551
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 773 bits (1999), Expect = 0.0
Identities = 234/578 (40%), Positives = 333/578 (57%), Gaps = 62/578 (10%)
Query: 33 SFRILQMASSTLICDTEPWKDLKNHVQEIKKTHLRDL-MSDTDRCQSMMVEFD------G 85
++L + S+L+ + WK L++ ++ + D R Q +E D
Sbjct: 39 KTKMLGVTDSSLL-NLPAWKRLQSLYEKYGNDSILSHFEKDHQRFQRYSIEIDLHSDDNF 97
Query: 86 ILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAA 145
+ LDYS+ + + D L LAE + M++G+++NSTENR+VLHVALR +
Sbjct: 98 LFLDYSKSHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRP 157
Query: 146 INSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTA 205
I DGK+V+ +V VL ++K+F+E +RSG W G TGK + ++V +GIGGS LGP+ V A
Sbjct: 158 IIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEA 217
Query: 206 LQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265
L+ R F++NVD +A+ + +N E T+ ++ SKTFTT ET+ NA +
Sbjct: 218 LKP-----FSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSA 272
Query: 266 REWISTALG------PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAV 319
R + + L AVAKH VA+STN V +FGID N FAFWDWVGGRYSV SA+
Sbjct: 273 RNALMSYLKENGISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAI 332
Query: 320 GVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAIL 379
G L + L G+ +FL GA +D HF S P E+N+P++L L+ IW +F G +A+L
Sbjct: 333 G-LSVMLSIGYDNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVL 391
Query: 380 PYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG- 438
PY Q L + ++QQ+ MESNGKGV+ + + G I FGE GTNGQH+FYQLIHQG
Sbjct: 392 PYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGT 451
Query: 439 RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAP--- 495
++IPCDFIG V++Q V +H LMSNFFAQ +AL VGK E++++E V
Sbjct: 452 KIIPCDFIGCVQTQNR------VGDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMS 505
Query: 496 -----HLIPHK-----------------------LLAIYEHRIAVEGFIWGINSFDQWGV 527
++IPHK ++A+YEH++ V+G IWGINS+DQWGV
Sbjct: 506 GDAIENMIPHKTFTGSRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGV 565
Query: 528 ELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRY 565
ELGK LA + QL + + + ST L+ +
Sbjct: 566 ELGKVLAKSILPQLKSG----NIVSDHDGSTNGLINMF 599
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 773 bits (1998), Expect = 0.0
Identities = 227/584 (38%), Positives = 330/584 (56%), Gaps = 63/584 (10%)
Query: 34 FRILQMASSTLICDTEPWKDLKNHVQEIKKTHLRDL-MSDTDRCQSMMVEF-------DG 85
+ + + T + W L+ ++ ++ +D++R Q V+ +
Sbjct: 39 LKGVGADADTTLTSCASWTQLQKLYEQYGDEPIKKHFETDSERGQRYSVKVSLGSKDENF 98
Query: 86 ILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAA 145
+ LDYS+ + + L +LAE + + ++ GE++N+TENR VLH+ALR +
Sbjct: 99 LFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRP 158
Query: 146 INSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTA 205
I DGK+V+P V KVLD+++ FSE +R+G W G TGK ++ VV +GIGGS LGP+ A
Sbjct: 159 IYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEA 218
Query: 206 LQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTL 265
L+ R L F++NVD +A+ + ++ E TL +V SKTFTT ET+ NA +
Sbjct: 219 LKPF-----SQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSA 273
Query: 266 REWISTALG------PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAV 319
R + L +VAKH VA+STN V++FGID N F FWDWVGGRYS+ SA+
Sbjct: 274 RRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAI 333
Query: 320 GVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAIL 379
G LP+ + G+ + L GA ID+HF +AP E+N+P+LL L+ +W ++F G AIL
Sbjct: 334 G-LPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAIL 392
Query: 380 PYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG- 438
PY Q L + ++QQ+ MESNGK V+ G + G I FGE GTNGQH+FYQLIHQG
Sbjct: 393 PYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGT 452
Query: 439 RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAP--- 495
+IPCDFIG ++SQ + +H MSNFFAQ +AL +GK+P ++++E A
Sbjct: 453 NLIPCDFIGAIQSQNK------IGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGER 506
Query: 496 ------HLIPHK-----------------------LLAIYEHRIAVEGFIWGINSFDQWG 526
L+PHK ++A+YEH++ V+G IWGI+S+DQWG
Sbjct: 507 SAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWG 566
Query: 527 VELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYLEASS 570
VELGK LA + QL + + ST L+ + E S
Sbjct: 567 VELGKVLAKSILPQLRPG----MRVNNHDSSTNGLINMFNELSH 606
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 446 bits (1149), Expect = e-153
Identities = 108/447 (24%), Positives = 173/447 (38%), Gaps = 68/447 (15%)
Query: 118 RMYNGEKINSTENRSVLHVA---LRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSG 174
R G + + +L A L A R + G +PE + L +++ + E
Sbjct: 7 RFLPGFPEALSRHGPLLEEARRRLLAKRGEPGSMLGWMDLPEDTETLREVRRYREA---- 62
Query: 175 SWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAK 234
++D V +GIGGS LGP + A G + +L +V+P + +
Sbjct: 63 ------NPWVEDFVLIGIGGSALGPKALEAAFNES--------GVRFHYLDHVEPEPILR 108
Query: 235 SITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEK 294
+ L+P TLV VSK+ +TAET+ +W+ LG +H+V + +
Sbjct: 109 LLRTLDPRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLG-EDWRRHLVVTTDPKEGPLR 167
Query: 295 FGIDPNNA--FAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPY 352
+ FA VGGR+S S VG+LPL+ + + ++ L GA ++ AP
Sbjct: 168 AFAEREGLKAFAIPKEVGGRFSALSPVGLLPLA--FAGADLDALLMGARKANETA-LAPL 224
Query: 353 EKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP 412
E+++P+ LL + P + YS+ L Q+ ES GK V G +
Sbjct: 225 EESLPLKTALLLHLHR---HLPVHVFMVYSERLSHLPSWFVQLHDESLGK-VDRQGQRVG 280
Query: 413 FEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSN 471
A G QH+ QL +G + + V +
Sbjct: 281 TTAV----PALGPKDQHAQVQLFREGPLDKLLALVIPEAPLEDV---------EIPEVEG 327
Query: 472 FFAQPDALAVGKTPEQLQKE------------NV------APHLIPH---KLLAIYEHRI 510
+ + GKT QL K P + P+ L+ +
Sbjct: 328 L--EAASYLFGKTLFQLLKAEAEATYEALAEAGQRVYALFLPEVSPYAVGWLMQHLMWQT 385
Query: 511 AVEGFIWGINSFDQWGVELGKSLATQV 537
A G +W +N+FDQ GVELGK L +
Sbjct: 386 AFLGELWEVNAFDQPGVELGKVLTRKR 412
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 414 bits (1066), Expect = e-140
Identities = 99/427 (23%), Positives = 169/427 (39%), Gaps = 49/427 (11%)
Query: 142 RDAAINSDGKNVVPEVWKVLDKIKEFSETIRS--GSWVGATGKVLK--DVVAVGIGGSFL 197
D + S + V V ++ +F++ RS S ++ VV +GIGGS L
Sbjct: 32 TDEDVKSVEEKVTSAVRNFVENTPDFAKLDRSWIDSVKSLEDWIINFDTVVVLGIGGSGL 91
Query: 198 GPLFVHTALQ----TDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTF 253
G L +H +L+ ++ E ++ + NVDP ++ + ++P+TTL V+SK+
Sbjct: 92 GNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPKTTLFNVISKSG 151
Query: 254 TTAETMLNARTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNN--AFAFWDWVGG 311
+TAE M R + A G +HM+ + + + + VGG
Sbjct: 152 STAEVMATYSIARGIL-EAYGLDP-REHMLITTDPEKGFLRKLVKEEGFRSLEVPPGVGG 209
Query: 312 RYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFL 371
R+SV + VG+L + G +++ +GA + + +N ++ L ++
Sbjct: 210 RFSVLTPVGLLSAMAE-GID-IDELHEGAKDAFEKSMKENILENPAAMIALTHYLYLNK- 266
Query: 372 GHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSF 431
G ++ YS + +Q+ ES GK ++ G + G+ G QHS
Sbjct: 267 GKSISVMMAYSNRMIYLVDWYRQLWAESLGKRYNLKGEEVFT--GQTPVKALGATDQHSQ 324
Query: 432 YQLIHQG-RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQK 490
QL ++G F+ V + + A+ LA K E L
Sbjct: 325 IQLYNEGPNDKVITFLRVENFDR-----------EIVIPETGRAELSYLARKKLSELLLA 373
Query: 491 ENVA-----------------PHLIPH---KLLAIYEHRIAVEGFIWGINSFDQWGVELG 530
E L P+ + A YE A G++ IN FDQ GVELG
Sbjct: 374 EQTGTEEALRENNRPNMRVTFDGLTPYNVGQFFAYYEAATAFMGYLLEINPFDQPGVELG 433
Query: 531 KSLATQV 537
K + +
Sbjct: 434 KKITFAL 440
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 350 bits (899), Expect = e-115
Identities = 106/510 (20%), Positives = 188/510 (36%), Gaps = 93/510 (18%)
Query: 85 GILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDA 144
I DYS ++ ++L L+E + + M + K ++ + +R ++
Sbjct: 2 AISFDYSNALPFMQE-NELDYLSEFVK---AAHHMLHERKGPGSDFLGWVDWPIRYDKN- 56
Query: 145 AINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHT 204
+IK+ +E IR+ S +V +GIGGS+LG
Sbjct: 57 ---------------EFSRIKQAAERIRNHS---------DALVVIGIGGSYLGARAAIE 92
Query: 205 ALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNART 264
AL + N+ ++ + L + + V+SK+ TT E + R
Sbjct: 93 ALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAFRI 152
Query: 265 LREWISTALGPSAVAKHMVAVSTN-----LTLVEKFGIDPNNAFAFWDWVGGRYSVCSAV 319
R+++ G K + + L ++ G + F D +GGRYSV +AV
Sbjct: 153 FRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYE---TFVIPDNIGGRYSVLTAV 209
Query: 320 GVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFL-GHPARAI 378
G+LP+++ G + +++ ++GA S + + N + N+ + G +
Sbjct: 210 GLLPIAVA-GLN-IDRMMEGAASAYHKYNNPDLLTNESYQYAA--VRNILYRKGKAIELL 265
Query: 379 LPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG 438
+ Y +L + +Q+ ES GK D G T HS Q + +G
Sbjct: 266 VNYEPSLHYVSEWWKQLFGESEGK----DQK------GLFPASVDFTTDLHSMGQYVQEG 315
Query: 439 RVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLI 498
R + + VK Q E N D L NF A GKT +++ K+ L+
Sbjct: 316 RRNLIETVLHVKKPQIELTIQEDPENIDGL--NFLA-------GKTLDEVNKKAFQGTLL 366
Query: 499 PHK---------------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQV 537
H ++ +E + G + G+N FDQ GVE K +
Sbjct: 367 AHVDGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAYKKNMFAL 426
Query: 538 RKQLHASRMKREPIEGFNFSTTTLLTRYLE 567
+ + GF L+ R +
Sbjct: 427 --------LGK---PGFEDEKAALMKRLSK 445
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 310 bits (797), Expect = e-100
Identities = 100/453 (22%), Positives = 165/453 (36%), Gaps = 67/453 (14%)
Query: 112 LNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWK--VLDKIKEFSE 169
+ + E E +H + A + G +P + +I E S+
Sbjct: 11 FSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASK 70
Query: 170 TIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLAN-VD 228
I+ S +V +GIGGS+LG L + ++ F+ N +
Sbjct: 71 RIKENS---------DVLVVIGIGGSYLGARAAIEMLTSSFR--NSNEYPEIVFVGNHLS 119
Query: 229 PIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHMVAVSTN 288
+ + L + V V+SK+ TT E + R ++ + G K + A +
Sbjct: 120 STYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDK 179
Query: 289 -----LTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSI 343
L G + F D VGGRYSV +AVG+LP++ G + +E + GA
Sbjct: 180 EKGALKQLATNEGYE---TFIVPDDVGGRYSVLTAVGLLPIATA-GIN-IEAMMIGAAKA 234
Query: 344 DQHFISAPYEKNIPVLLGLLSIWNVSFL-GHPARAILPYSQALEKFAPHIQQVSMESNGK 402
+ S E+NI I N+ + G+ ++ Y +++ F +Q+ ES GK
Sbjct: 235 REELSSDKLEENIAYQYAT--IRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGK 292
Query: 403 GVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVV 462
G T HS Q + +GR F VVK P Y
Sbjct: 293 DFK----------GIYPSSANYTTDLHSLGQYVQEGRRFL--FETVVKVNHPKYDITIEK 340
Query: 463 SNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPHK--------------------- 501
+ D N+ A GKT +++ + L+ H
Sbjct: 341 DSDDLDGLNYLA-------GKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGY 393
Query: 502 LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 534
++ +E A+ G+ G+N F+Q GVE K
Sbjct: 394 VVYFFELACAMSGYQLGVNPFNQPGVEAYKQNM 426
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 3e-08
Identities = 50/286 (17%), Positives = 104/286 (36%), Gaps = 58/286 (20%)
Query: 326 LQYGFSVVEKFLKGAWSIDQHFISAPY--EKNIPVLLGLLSIWNVSFLGHPARAILPYSQ 383
L +V+KF++ I+ F+ +P E+ P ++ + I L + + Y+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 384 ALEKFAPHIQQVSME-SNGKGVSIDGVP------LPFEAGEI--DFGEPGTNGQHSFYQL 434
+ + ++Q +E K V IDGV + A ++ + F+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFW-- 186
Query: 435 IHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA 494
++ + V++ Q + + + N+ ++ D + K + +
Sbjct: 187 LNLKNCNSPE--TVLEMLQKLLYQ---------IDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 495 PHLI----PHKLLAIYEHRIAVEGFIWG---INSFDQWGVELG-KSLAT----QVRKQLH 542
L + LL + + + N+F+ L K L T QV L
Sbjct: 236 RLLKSKPYENCLL-VLLN-------VQNAKAWNAFN-----LSCKILLTTRFKQVTDFLS 282
Query: 543 ASRMKREPIEGFNFSTT-----TLLTRYLEAS-SDIPSDPSTLLPR 582
A+ ++ + + T +LL +YL+ D+P + T PR
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Score = 54.1 bits (129), Expect = 1e-07
Identities = 62/436 (14%), Positives = 128/436 (29%), Gaps = 140/436 (32%)
Query: 20 IQFFYKSLSFLGFSFRILQMASSTLICDTEPWKDLKNHVQEI-KKTHLRDLMSDTDRCQS 78
Q+ YK IL + + + + KD+++ + I K + ++ D
Sbjct: 14 HQYQYKD---------ILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 79 MMVEFDGILLDYSRQNATLK-----TMDKLYQ-LAEAAQLNNK----INRMYNGEKINST 128
+ F LL Q ++ + Y+ L + + + RMY E+ +
Sbjct: 64 TLRLFW-TLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRL 119
Query: 129 ENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWV-----GATGK- 182
N + + R + K+ + E +R V +GK
Sbjct: 120 YNDNQVFAKYNVSR-----------LQPYLKLRQALLE----LRPAKNVLIDGVLGSGKT 164
Query: 183 VL-KDVV-AVGIGGSFLGPLF------VHTA------LQT-------DLEA--------- 212
+ DV + + +F ++ LQ + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 213 --IECARGRQLRF------------LANV------DPIDVA---------KSIT-GLNPE 242
I + R L NV + +++ K +T L+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 243 TTLVVVV---SKTFTTAETMLNARTLREWISTA---LGPSAVAKHMVAVSTNLTLVEKFG 296
TT + + S T T E L +++ L + + +S + E
Sbjct: 285 TTTHISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIR 338
Query: 297 IDPNNAFAFWD-WVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSID--QHFIS-APY 352
WD W ++ C + +++E L + + F + +
Sbjct: 339 DGLAT----WDNW---KHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 353 EKNIPVLLGLLSI-WN 367
+ + LLS+ W
Sbjct: 382 PPSAHIPTILLSLIWF 397
Score = 51.4 bits (122), Expect = 8e-07
Identities = 76/524 (14%), Positives = 142/524 (27%), Gaps = 173/524 (33%)
Query: 130 NRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVL----- 184
+ +L V A D N D K+V +L K +E I S V T ++
Sbjct: 18 YKDILSVFEDAFVD---NFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 185 --KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLA------NVDPIDVAKS- 235
+++V FV L+ + + FL P + +
Sbjct: 74 KQEEMVQK----------FVEEVLRINYK-----------FLMSPIKTEQRQPSMMTRMY 112
Query: 236 ITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALGPSA-VAKH-M---------VA 284
I + V +K + LR+ + L P+ V + +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLE-LRPAKNVLIDGVLGSGKTWVALD 169
Query: 285 VSTNLTLVEKFGIDPNNAFAFWDWVG-GRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSI 343
V + + K F W+ C++ + LQ ++
Sbjct: 170 VCLSYKVQCKM---DFKIF----WLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 344 DQH---------------FISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKF 388
+ S PYE LL LL++ N ++A F
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQN--------------AKAWNAF 262
Query: 389 APH-----------IQQVSMESNGKGVSIDGVPLPFEAGE--------IDFGEPGTNGQH 429
+ + +S+D + E +D
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---------C 313
Query: 430 SFYQLIHQGRVI-P--CDFIGVVKSQQPV---YLKGEVVSNHDELMSNFFAQPDALAVGK 483
L + P I K ++ + + L
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVL---- 366
Query: 484 TPEQLQK---------ENVAPHLIPHKLLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 534
P + +K + IP LL++ W ++ KS
Sbjct: 367 EPAEYRKMFDRLSVFPPSA---HIPTILLSLI----------WF---------DVIKSDV 404
Query: 535 TQVRKQLHASRM-KREPIEGFNFSTTTLLTRYLEASSDIPSDPS 577
V +LH + +++P E ST ++ + YLE + ++ +
Sbjct: 405 MVVVNKLHKYSLVEKQPKE----STISIPSIYLELKVKLENEYA 444
Score = 34.8 bits (79), Expect = 0.087
Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 62/167 (37%)
Query: 11 YCQ--LPAIHLIQFFYKSLSFLG-------------------FSFRILQMASSTLICDTE 49
+ L +L Q+FY S +G FR L+ + D+
Sbjct: 459 FDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHDST 512
Query: 50 PWK---DLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQL 106
W + N +Q++K + + D D +++ ++ +D L ++
Sbjct: 513 AWNASGSILNTLQQLKF--YKPYICDNDP------KYERLVNAI---------LDFLPKI 555
Query: 107 AEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNV 153
E + ++ +L +AL A +A K V
Sbjct: 556 ---------------EENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 31.4 bits (70), Expect = 1.1
Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 60/215 (27%)
Query: 9 SLYCQLPAIHLIQFFYKSLSFLGFSFRILQMASSTLICDTEPWKDLKNHVQE--IKKTHL 66
SL PA + + + LS S I + S + W D+ + K H
Sbjct: 362 SLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLI------WFDVIKSDVMVVVNKLHK 413
Query: 67 RDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKIN 126
L+ + +S + I L+ + L L+ I YN K
Sbjct: 414 YSLV-EKQPKEST-ISIPSIYLELKVK------------LENEYALHRSIVDHYNIPKTF 459
Query: 127 STENRSVL--------HVA--LRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSW 176
+++ H+ L+ +++ F +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHP-----------------ERMTLFRMVFLDFRF 502
Query: 177 VGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLE 211
+ K+ D A GS L L L+
Sbjct: 503 LEQ--KIRHDSTAWNASGSILNTL-------QQLK 528
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 9e-07
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 102/289 (35%)
Query: 142 RDAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGP-- 199
D S +VW D F +T G + D+V P
Sbjct: 1633 MDLYKTSK---AAQDVWNRADNH--FKDTY---------GFSILDIVINN-------PVN 1671
Query: 200 LFVHTALQTDLEAIECARGRQLR-------FLANVDPIDVAKSI-TGLNPETTLVVVVSK 251
L +H + +G+++R F VD + I +N +T S
Sbjct: 1672 LTIHFGGE---------KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST-----SY 1717
Query: 252 TFTTAETMLNARTLREWIST--ALGPSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWV 309
TF + + +L+ T T AL + + K L K I + FA
Sbjct: 1718 TFRSEKGLLS-AT----QFTQPAL--TLMEKAAFED-----LKSKGLIPADATFA----- 1760
Query: 310 G---GRYS--VCSAVGVLPLSLQYGFSVVE------KFLKGAWSIDQHFISAPYEKNIPV 358
G G Y+ A V+ + S+VE ++ A D+ S
Sbjct: 1761 GHSLGEYAALASLA-DVMSIE-----SLVEVVFYRGMTMQVAVPRDELGRSNY------- 1807
Query: 359 LLGLLSIWNVSFLGHPARAILPYSQ-ALEKFAPHIQQVSMESNGKGVSI 406
G+++I +P R +SQ AL+ +++V + G V I
Sbjct: 1808 --GMIAI-------NPGRVAASFSQEALQYV---VERVGKRT-GWLVEI 1843
Score = 50.8 bits (121), Expect = 1e-06
Identities = 69/409 (16%), Positives = 117/409 (28%), Gaps = 153/409 (37%)
Query: 2 LFGW-----------FLRSLYCQLPAIHLIQF--FYKSLSFLGFS----FRILQ------ 38
+ W +L S+ P I +IQ + + LGF+ L+
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 39 --MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQ----SMMVEFDGILLDYSR 92
+ ++ I +T+ W+ V++ + L RC + + IL D
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKA----ITVLFFIGVRCYEAYPNTSLPPS-ILEDSLE 329
Query: 93 QNATLKTMDKLYQLA----EAAQLNNKINRMYNGEKINST--ENRSVLHVALRAPRDAAI 146
N + + L+ Q+ + + K NS + V ++L +
Sbjct: 330 NNEGVPS----PMLSISNLTQEQVQDYV------NKTNSHLPAGKQV-EISL-------V 371
Query: 147 NSDGKNVV---PE----VWKVLDKIK----------EFSETIRSGSWVGATGKVLKDVVA 189
N VV P+ + L K K FSE R
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE--R----------------K 413
Query: 190 VGIGGSFLGPLFV--HTALQTDLEAIECARGRQLRFLANVDPI---DVAKSITGLNPETT 244
+ FL P+ H+ L L + D+ K+ N +
Sbjct: 414 LKFSNRFL-PVASPFHSHL-----------------LVPASDLINKDLVKNNVSFNAK-D 454
Query: 245 LVVVVSKTFTTAETMLNARTLREWISTALGPSAVAKHM---VAVSTNLTLVEKFGIDPNN 301
+ + V TF + + R L IS + + + T + FG P
Sbjct: 455 IQIPVYDTFDGS----DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--P-- 506
Query: 302 AFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISA 350
GG S +GVL + G I A
Sbjct: 507 --------GG----ASGLGVL----------THRNKDGTG---VRVIVA 530
Score = 41.2 bits (96), Expect = 0.001
Identities = 45/306 (14%), Positives = 87/306 (28%), Gaps = 124/306 (40%)
Query: 317 SAVGVLPLSLQYG-----FSV-----------VEKFLK-------GAWSIDQHFISAPYE 353
A PL+L +G V E+F K G + D+ + P E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAE 59
Query: 354 KNIPVLLGLLSIWNVSFLGHPARAILP-----YSQALEKFAPHIQQVSMESNGKGVSIDG 408
L+G FLG+ + + P + Q L + +E N
Sbjct: 60 -----LVG-------KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-------- 99
Query: 409 VPLPFEAGEIDFGEPGTNGQHSF-YQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNH-- 465
+I H+ +L+ + ++K+ Y+ +++
Sbjct: 100 --------DI----------HALAAKLLQENDTTLVKTKELIKN----YITARIMAKRPF 137
Query: 466 -DELMSNFFAQPDALAVGK-----------TPEQLQKENVAPHLIPHKLLAIYEH-RIAV 512
+ S F A+ G + +E L +Y+ + V
Sbjct: 138 DKKSNSALF---RAVGEGNAQLVAIFGGQGNTDDYFEE----------LRDLYQTYHVLV 184
Query: 513 EGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPI--EGFNFSTTTLLTRYLEASS 570
I + + +L + + E + +G N + +LE S
Sbjct: 185 GDLI---------------KFSAETLSELIRTTLDAEKVFTQGLN------ILEWLENPS 223
Query: 571 DIPSDP 576
+ P
Sbjct: 224 NTPDKD 229
Score = 32.7 bits (74), Expect = 0.43
Identities = 42/258 (16%), Positives = 76/258 (29%), Gaps = 99/258 (38%)
Query: 324 LSLQYGFSVVEKFLKGAWSIDQHF-------ISAPYEKNI------------PVLLGL-L 363
YGFS+++ + ++ HF I Y I + +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 364 SIWNVSFLGHPA----------RAILPYSQA----LEK---------FAPHIQQVSMESN 400
+ +F A+ +A L+ FA H S+
Sbjct: 1713 HSTSYTF-RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH----SL--- 1764
Query: 401 GKG-----VSIDGVPLPFEA--------GE-IDFGEPGTNGQHSFYQL--IHQGRVIP-- 442
G S+ V + E+ G + P S Y + I+ GRV
Sbjct: 1765 --GEYAALASLADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 443 --------CDFIG-----VVKSQQPV-Y-LKGE--VVSNH----DELMS--NFFAQPDAL 479
+ +G +V + V Y ++ + V + D + + NF +
Sbjct: 1822 SQEALQYVVERVGKRTGWLV---EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ-KI 1877
Query: 480 AVGKTPEQLQKENVAPHL 497
+ + + L E V HL
Sbjct: 1878 DIIELQKSLSLEEVEGHL 1895
Score = 30.0 bits (67), Expect = 2.5
Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 41/146 (28%)
Query: 3 FGW-FLR------SLYCQLPAIHLIQFFYKSLSFLGFSFRILQMASSTLIC---DTEPWK 52
F FL S PA LI K L SF + + DT
Sbjct: 416 FSNRFLPVASPFHSHLLV-PASDLIN---KDLVKNNVSFN-----AKDIQIPVYDTFDGS 466
Query: 53 DLKNHVQEIKKTHLRDLMSDT---DRCQSM----MVEFD-------GILLDYSRQNATLK 98
DL+ I + + ++ + +++F G+L ++ +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV- 525
Query: 99 TMDKLYQLAEAAQLNNKINRMYNGEK 124
++ A L+ + Y G K
Sbjct: 526 ------RVIVAGTLDINPDDDY-GFK 544
Score = 28.5 bits (63), Expect = 7.6
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 29/76 (38%)
Query: 507 EHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASRMKREPIEGFNFSTTTLLTRYL 566
EH + V + +A+Q+++Q + EP EGF
Sbjct: 17 EHVLLV--------PTASF------FIASQLQEQFNKIL--PEPTEGF------------ 48
Query: 567 EASSDIPSDPSTLLPR 582
A+ D P+ P+ L+ +
Sbjct: 49 -AADDEPTTPAELVGK 63
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 34.1 bits (77), Expect = 0.094
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 21/113 (18%)
Query: 160 VLDKIKEFSETIRSGSWVGATGKVLK-----DVVAVGIGGSFLGPLFVHTALQTDLEAIE 214
L+ + + G+V++ + G+GGS + + T +
Sbjct: 8 YLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTWNWEV- 66
Query: 215 CARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLRE 267
+ K L L++ VS + T ET+ +
Sbjct: 67 --------------EVIAVKD-YFLKARDGLLIAVSYSGNTIETLYTVEYAKR 104
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.4
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 17/42 (40%)
Query: 450 KSQQPVYLKGEVVSNHDELMSNF--FAQPD---ALAVGKTPE 486
+ Q LK +L ++ +A D ALA+ T E
Sbjct: 18 EKQA---LK--------KLQASLKLYA-DDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 1.6
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 9/31 (29%)
Query: 123 EK--INSTENRSVLHVALRAPRDA---AINS 148
EK + + + L A A AI +
Sbjct: 18 EKQALKKLQAS----LKLYADDSAPALAIKA 44
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 28.8 bits (64), Expect = 4.4
Identities = 12/127 (9%), Positives = 31/127 (24%), Gaps = 19/127 (14%)
Query: 185 KDVVAVGIGGSFLGPLFV---HTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNP 241
+ A G + ++V + + +T A A + +
Sbjct: 68 VALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRRKG------- 120
Query: 242 ETTLVVVVSKTFTTAETMLNARTLREWISTALGPSAVAK---------HMVAVSTNLTLV 292
++ + + E G ++ K + LT
Sbjct: 121 ADIRIIASGRDAEEFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAA 180
Query: 293 EKFGIDP 299
+ G++
Sbjct: 181 HRLGLEE 187
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 28.0 bits (63), Expect = 10.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 395 VSMESNGKGVSIDGVPLPFEAGEIDFGEPGT 425
+ ++ G +++ G P +D G GT
Sbjct: 67 LRVDGVGSELTVSGRIEPGPGARVDCGLAGT 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,984,488
Number of extensions: 553642
Number of successful extensions: 1192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1094
Number of HSP's successfully gapped: 32
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)