RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007963
(583 letters)
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 407 bits (1047), Expect = e-137
Identities = 231/571 (40%), Positives = 328/571 (57%), Gaps = 61/571 (10%)
Query: 40 ASSTLICDTEPWKDLKNHVQEIKKTHLRDLM-SDTDRCQSMMVEFD------GILLDYSR 92
+ + + + WK L++ ++ + D R Q +E D + LDYS+
Sbjct: 2 VTDSSLLNLPAWKRLQSLYEKYGNDSILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDYSK 61
Query: 93 QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKN 152
+ + D L LAE + M++G+++NSTENR+VLHVALR + I DGK+
Sbjct: 62 SHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKD 121
Query: 153 VVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEA 212
V+ +V VL ++K+F+E +RSG W G TGK + ++V +GIGGS LGP+ V AL+
Sbjct: 122 VMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPF--- 178
Query: 213 IECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTA 272
R F++NVD +A+ + +N E T+ ++ SKTFTT ET+ NA + R + +
Sbjct: 179 --SKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSY 236
Query: 273 LG------PSAVAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSL 326
L AVAKH VA+STN V +FGID N FAFWDWVGGRYSV SA+G L + L
Sbjct: 237 LKENGISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIG-LSVML 295
Query: 327 QYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALE 386
G+ +FL GA +D HF S P E+N+P++L L+ IW +F G +A+LPY Q L
Sbjct: 296 SIGYDNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLW 355
Query: 387 KFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQG-RVIPCDF 445
+ ++QQ+ MESNGKGV+ + + G I FGE GTNGQH+FYQLIHQG ++IPCDF
Sbjct: 356 RLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDF 415
Query: 446 IGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA--------PHL 497
IG V++Q V +H LMSNFFAQ +AL VGK E++++E V ++
Sbjct: 416 IGCVQTQNRV------GDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENM 469
Query: 498 IPHK-----------------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLA 534
IPHK ++A+YEH++ V+G IWGINS+DQWGVELGK LA
Sbjct: 470 IPHKTFTGSRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLA 529
Query: 535 TQVRKQLHASRMKREPIEGFNFSTTTLLTRY 565
+ QL + + + ST L+ +
Sbjct: 530 KSILPQLKSG----NIVSDHDGSTNGLINMF 556
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 385 bits (990), Expect = e-128
Identities = 244/562 (43%), Positives = 333/562 (59%), Gaps = 53/562 (9%)
Query: 45 ICDTEPWKDLKNHVQEIKK-THLRDLM-SDTDRCQSMMVEFD----GILLDYSRQNATLK 98
+ ++ L+ +E + +LR L ++ DR + + IL+DYS+ T
Sbjct: 3 LTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLVTED 62
Query: 99 TMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVW 158
M L LA++ + RM+NGEKIN TE R+VLHVALR + I DGK+V+PEV
Sbjct: 63 VMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVN 122
Query: 159 KVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFVHTALQTDLEAIECARG 218
KVLDK+K F + +RSG W G TGK + DV+ +GIGGS LGPL V AL+ + G
Sbjct: 123 KVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKP-----YSSGG 177
Query: 219 RQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNARTLREWISTALG-PSA 277
++ +++N+D +AK++ LNPE++L ++ SKTFTT ET+ NA T +EW A PSA
Sbjct: 178 PRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSA 237
Query: 278 VAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFL 337
VAKH VA+STN T V++FGIDP N F FWDWVGGRYS+ SA+G+ L GF E+ L
Sbjct: 238 VAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIA-LHVGFDNFEQLL 296
Query: 338 KGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSM 397
GA +DQHF + P EKN PVLL LL IW ++ G A+LPY Q L +FA + QQ M
Sbjct: 297 SGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDM 356
Query: 398 ESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIH-QGRVIPCDFIGVVKSQQPVY 456
ESNGK ++ G + + G I +GEPGTNGQH+FYQLIH ++IPCDF+ V++Q P+
Sbjct: 357 ESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPI- 415
Query: 457 LKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVA--------PHLIPHK------- 501
+H L++NF AQ +AL GK+ E+ +KE A L+PHK
Sbjct: 416 ---RKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRP 472
Query: 502 ----------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRKQLHASR 545
L+A+YEH+I V+G IW INSFDQWGVELGK LA ++ +L S
Sbjct: 473 TNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGS- 531
Query: 546 MKREPIEGFNFSTTTLLTRYLE 567
+ + ST L+ +
Sbjct: 532 ---AQVTSHDASTNGLINFIKQ 550
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 190 bits (482), Expect = 7e-55
Identities = 96/505 (19%), Positives = 166/505 (32%), Gaps = 89/505 (17%)
Query: 85 GILLDYSR--QNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPR 142
I DYS +D L + +AA + M + K ++ + +R +
Sbjct: 1 AISFDYSNALPFMQENELDYLSEFVKAA------HHMLHERKGPGSDFLGWVDWPIRYDK 54
Query: 143 DAAINSDGKNVVPEVWKVLDKIKEFSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPLFV 202
+ +IK+ +E IR+ S +V +GIGGS+LG
Sbjct: 55 N----------------EFSRIKQAAERIRNHS---------DALVVIGIGGSYLGARAA 89
Query: 203 HTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETTLVVVVSKTFTTAETMLNA 262
AL + N+ ++ + L + + V+SK+ TT E +
Sbjct: 90 IEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAF 149
Query: 263 RTLREWISTALGPSAVAKHMVAVSTNLTLVEKFGIDPNNA--FAFWDWVGGRYSVCSAVG 320
R R+++ G K + + K D F D +GGRYSV +AVG
Sbjct: 150 RIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIGGRYSVLTAVG 209
Query: 321 VLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYEKNIPVLLGLLSIWNVSFLGHPARAILP 380
+LP + +++ ++GA S + + N + + G ++
Sbjct: 210 LLP--IAVAGLNIDRMMEGAASAYHKYNNPDLLTNESYQYAAV-RNILYRKGKAIELLVN 266
Query: 381 YSQALEKFAPHIQQVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSFYQLIHQGRV 440
Y +L + +Q+ ES GK T HS Q + +GR
Sbjct: 267 YEPSLHYVSEWWKQLFGESEGKDQKGL----------FPASVDFTTDLHSMGQYVQEGRR 316
Query: 441 IPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAVGKTPEQLQKENVAPHLIPH 500
+ + VK Q GKT +++ K+ L+ H
Sbjct: 317 NLIETVLHVKKPQ---------IELTIQEDPENIDGLNFLAGKTLDEVNKKAFQGTLLAH 367
Query: 501 K---------------------LLAIYEHRIAVEGFIWGINSFDQWGVELGKSLATQVRK 539
++ +E + G + G+N FDQ GVE K +
Sbjct: 368 VDGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAYKKNMFALLG 427
Query: 540 QLHASRMKREPIEGFNFSTTTLLTR 564
+ GF L+ R
Sbjct: 428 K-----------PGFEDEKAALMKR 441
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 132
Score = 29.7 bits (66), Expect = 0.41
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 278 VAKHMVAVSTNLTLVEKFGIDPNNAFAFWDWVGGRYSVC 316
+A ++ A L + K G+ A + GR +
Sbjct: 15 LAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNAT 53
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 29.7 bits (66), Expect = 1.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 114 NKINRMYNGEKINSTENRSVLHVALRAPRDAAINSD--GKNVVPEVWKVLDKIKE 166
+K+ G+KI + L+V P I D G +V P + KV+D E
Sbjct: 3 SKVVVPAQGKKITLQNGK--LNVPEN-PIIPYIEGDGIGVDVTPAMLKVVDAAVE 54
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 154
Score = 28.8 bits (64), Expect = 1.2
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 2 LFGWFLRSLYCQLPAIHLIQFFYKSLSFLGFSFRILQMASSTLIC----DTEPWKDLKNH 57
L Y ++ + ++ + L++ G I + + + D + K
Sbjct: 91 LIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKD 150
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 29.3 bits (65), Expect = 1.5
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 19/134 (14%)
Query: 119 MYNGEKINSTENRSVLHVALRAPRDAAINSD--GKNVVPEVWKVLDKIK----------E 166
M GEKI + L+V P I D G ++ KVL+
Sbjct: 1 MAQGEKITVSNGV--LNVPNN-PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKIT 57
Query: 167 FSETIRSGSWVGATGKVLKDVVAVGIGGSFLGPL-FVHTALQTDLEAIECARGRQLRFLA 225
+ E TG+ L I F+ + T + + ++ A ++L
Sbjct: 58 WKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFV 117
Query: 226 NVDPIDVAKSITGL 239
+ P+ + TG+
Sbjct: 118 CLRPV---RYFTGV 128
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 26.6 bits (58), Expect = 2.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 533 LATQVRKQLHASRMKR------EPIEGFNFSTTTLLTRYLEASSDI 572
LA + +++HA MKR P F+FS LL+R E ++
Sbjct: 6 LAEKFLREMHAKYMKRVSRPGNTPRPWFDFSEERLLSRLFEEMDEL 51
>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 248
Score = 27.0 bits (58), Expect = 6.1
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 294 KFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSVVEKFLKGAWSIDQHFISAPYE 353
K N + ++ S +G + + G + + Y
Sbjct: 131 KKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYP 190
Query: 354 KNIPVLLGLLSIWNVSFLGHPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGVPLP 412
+ I + G A +P + + I ++ + NG V+ DG PL
Sbjct: 191 QRIMCVSLHPGWVKTDMGGSSAPLDVP--TSTGQIVQTISKLGEKQNGGFVNYDGTPLA 247
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.9 bits (58), Expect = 6.8
Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 13/161 (8%)
Query: 11 YCQLPAIHLIQFFYKSLSFLGFSFRILQMASSTLICDTEPWKDLKNHVQEIKKTHLRDLM 70
Q I F+ + + S + I + E
Sbjct: 94 LLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGF 153
Query: 71 SDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTEN 130
+ ++ + L +++L+ E + + N
Sbjct: 154 IYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHE-----AWLIHKTTKLHFEALMN 208
Query: 131 RSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKEFSETI 171
VL + D N D V + ++ ++ F + +
Sbjct: 209 IPVLVL------DV--NDDFSEEVTKQEDLMREVNTFVKNL 241
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 139
Score = 26.4 bits (58), Expect = 6.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 68 DLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNN 114
LM + Q + E G++LD R+ T + + + + + N
Sbjct: 94 KLMLQS--AQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDAN 138
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 26.4 bits (57), Expect = 9.7
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 185 KDVVAVGIGGSFLGPLFVHTALQTDLEAIECARGRQLRFLANVDPIDVAKSITGLNPETT 244
+ G+GGS + + T N + +A L
Sbjct: 37 PRLYISGMGGSGVVADLIRDFSLTW----------------NWEVEVIAVKDYFLKARDG 80
Query: 245 LVVVVSKTFTTAETMLNARTLREW 268
L++ VS + T ET+ +
Sbjct: 81 LLIAVSYSGNTIETLYTVEYAKRR 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,169,955
Number of extensions: 100753
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 14
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)