Query 007966
Match_columns 583
No_of_seqs 242 out of 1800
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 17:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 6.5E-53 1.4E-57 461.6 50.0 406 22-432 5-414 (557)
2 KOG1287 Amino acid transporter 100.0 3.4E-50 7.4E-55 414.8 32.9 385 43-440 6-396 (479)
3 PRK15049 L-asparagine permease 100.0 7.4E-48 1.6E-52 417.9 47.6 369 46-431 25-408 (499)
4 PRK10249 phenylalanine transpo 100.0 1.3E-47 2.8E-52 413.0 45.7 369 42-429 14-395 (458)
5 PRK11387 S-methylmethionine tr 100.0 2.2E-47 4.8E-52 413.1 47.3 367 46-432 11-395 (471)
6 PRK11357 frlA putative fructos 100.0 9.5E-48 2.1E-52 413.6 43.5 379 45-439 4-388 (445)
7 PRK10746 putative transport pr 100.0 1.8E-46 3.8E-51 403.9 46.9 369 45-432 6-391 (461)
8 PRK10655 potE putrescine trans 100.0 1.9E-46 4.1E-51 402.8 46.5 365 47-432 4-379 (438)
9 PRK10644 arginine:agmatin anti 100.0 2.2E-46 4.7E-51 402.8 46.7 369 46-432 5-381 (445)
10 PRK10238 aromatic amino acid t 100.0 2.7E-46 5.9E-51 402.5 46.1 369 46-433 9-390 (456)
11 PRK11049 D-alanine/D-serine/gl 100.0 6.1E-46 1.3E-50 401.4 47.9 370 45-433 16-403 (469)
12 TIGR01773 GABAperm gamma-amino 100.0 4.4E-46 9.6E-51 401.4 44.9 368 46-432 9-391 (452)
13 PRK10836 lysine transporter; P 100.0 1.2E-45 2.6E-50 401.2 47.1 368 43-429 9-399 (489)
14 PRK10580 proY putative proline 100.0 4.2E-45 9.1E-50 394.0 48.3 370 44-432 4-388 (457)
15 TIGR00905 2A0302 transporter, 100.0 3.6E-45 7.7E-50 396.0 46.8 370 47-430 5-385 (473)
16 TIGR00911 2A0308 L-type amino 100.0 2.5E-45 5.4E-50 400.3 45.6 378 43-433 36-419 (501)
17 TIGR00908 2A0305 ethanolamine 100.0 3.3E-45 7.2E-50 393.7 45.1 377 44-440 2-385 (442)
18 PRK10435 cadB lysine/cadaverin 100.0 7.8E-45 1.7E-49 389.3 46.2 361 47-427 3-377 (435)
19 TIGR00909 2A0306 amino acid tr 100.0 1.4E-44 2.9E-49 387.8 46.5 377 47-432 1-379 (429)
20 KOG1286 Amino acid transporter 100.0 9.1E-47 2E-51 404.7 29.3 384 45-432 26-426 (554)
21 TIGR00913 2A0310 amino acid pe 100.0 2.2E-44 4.9E-49 391.0 46.3 365 48-431 1-394 (478)
22 PRK10197 gamma-aminobutyrate t 100.0 1.7E-44 3.7E-49 387.4 43.7 352 59-429 2-368 (446)
23 COG0833 LysP Amino acid transp 100.0 3.8E-45 8.3E-50 378.3 36.5 367 46-430 41-429 (541)
24 COG1113 AnsP Gamma-aminobutyra 100.0 1.6E-44 3.5E-49 366.4 38.6 371 43-432 7-392 (462)
25 TIGR03810 arg_ornith_anti argi 100.0 8.1E-44 1.8E-48 385.0 46.3 368 49-430 1-381 (468)
26 TIGR03813 put_Glu_GABA_T putat 100.0 5.3E-44 1.2E-48 387.2 44.6 435 49-552 1-453 (474)
27 TIGR03428 ureacarb_perm permea 100.0 2.6E-43 5.6E-48 381.7 47.4 385 40-429 4-402 (475)
28 TIGR00910 2A0307_GadC glutamat 100.0 1.3E-43 2.7E-48 385.3 44.5 427 48-546 3-450 (507)
29 PRK11021 putative transporter; 100.0 4.3E-43 9.2E-48 373.5 45.9 356 51-429 1-362 (410)
30 TIGR00907 2A0304 amino acid pe 100.0 2.2E-43 4.7E-48 383.5 44.0 380 40-427 3-407 (482)
31 PRK15238 inner membrane transp 100.0 7.1E-42 1.5E-46 372.3 44.7 374 47-429 5-422 (496)
32 TIGR00930 2a30 K-Cl cotranspor 100.0 3.9E-41 8.4E-46 383.9 45.3 381 47-435 74-493 (953)
33 KOG1289 Amino acid transporter 100.0 8.3E-42 1.8E-46 352.6 31.0 456 30-553 29-509 (550)
34 PF13520 AA_permease_2: Amino 100.0 2.8E-41 6.1E-46 361.9 35.3 366 51-433 1-379 (426)
35 COG0531 PotE Amino acid transp 100.0 4.7E-39 1E-43 348.7 42.6 376 45-432 8-392 (466)
36 PF00324 AA_permease: Amino ac 100.0 2.5E-39 5.4E-44 351.4 13.3 365 57-432 3-395 (478)
37 TIGR00837 araaP aromatic amino 99.9 1.9E-25 4.2E-30 235.7 31.7 356 58-442 4-371 (381)
38 KOG1288 Amino acid transporter 99.9 6.4E-22 1.4E-26 206.3 23.4 381 47-435 62-478 (945)
39 TIGR00912 2A0309 spore germina 99.9 5.6E-20 1.2E-24 192.5 38.0 288 49-361 1-295 (359)
40 KOG2082 K+/Cl- cotransporter K 99.9 8.9E-21 1.9E-25 199.1 26.7 382 50-435 113-601 (1075)
41 PHA02764 hypothetical protein; 99.9 3E-19 6.6E-24 171.8 27.8 281 42-382 5-285 (399)
42 KOG2083 Na+/K+ symporter [Inor 99.8 1.1E-19 2.5E-24 188.6 18.6 371 48-433 27-419 (643)
43 TIGR00796 livcs branched-chain 99.8 1.7E-16 3.8E-21 164.1 36.2 340 59-439 3-365 (378)
44 TIGR00814 stp serine transport 99.8 7.6E-17 1.6E-21 169.0 33.2 361 57-440 9-386 (397)
45 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.9E-15 4.2E-20 158.7 36.6 347 49-423 1-356 (394)
46 PRK10483 tryptophan permease; 99.7 9.6E-15 2.1E-19 152.2 33.5 355 47-430 7-371 (414)
47 PRK09664 tryptophan permease T 99.7 3.7E-14 7.9E-19 147.7 32.4 353 52-431 10-373 (415)
48 PRK15132 tyrosine transporter 99.7 2.9E-13 6.3E-18 141.8 33.6 347 52-429 4-359 (403)
49 COG0814 SdaC Amino acid permea 99.7 6.2E-13 1.3E-17 140.8 35.9 286 47-348 5-301 (415)
50 PRK13629 threonine/serine tran 99.6 1.3E-12 2.9E-17 136.2 36.0 367 58-440 26-422 (443)
51 PF03845 Spore_permease: Spore 99.6 9.4E-13 2E-17 135.6 32.6 288 50-363 1-293 (320)
52 COG1115 AlsT Na+/alanine sympo 99.6 8.7E-13 1.9E-17 135.1 25.1 297 47-362 59-382 (452)
53 PF01235 Na_Ala_symp: Sodium:a 99.5 9.5E-12 2.1E-16 129.2 30.3 297 47-362 15-338 (416)
54 TIGR00835 agcS amino acid carr 99.5 1.4E-10 2.9E-15 121.4 30.9 296 48-363 44-366 (425)
55 KOG1303 Amino acid transporter 99.3 3.7E-09 8.1E-14 111.5 29.9 358 47-430 34-400 (437)
56 PTZ00206 amino acid transporte 99.3 3.1E-08 6.6E-13 107.1 36.1 252 52-311 61-319 (467)
57 PLN03074 auxin influx permease 99.3 5E-08 1.1E-12 105.1 36.5 237 50-311 45-294 (473)
58 KOG1304 Amino acid transporter 99.2 3.1E-08 6.7E-13 103.1 29.5 350 48-433 44-416 (449)
59 PRK11375 allantoin permease; P 99.0 1.7E-05 3.7E-10 86.1 40.8 328 46-398 22-364 (484)
60 COG1457 CodB Purine-cytosine p 98.9 2.4E-05 5.2E-10 82.2 38.0 243 85-360 54-299 (442)
61 COG3949 Uncharacterized membra 98.9 4.4E-06 9.5E-11 82.8 29.6 269 57-353 9-280 (349)
62 PF01490 Aa_trans: Transmembra 98.9 3.6E-10 7.9E-15 120.5 1.4 360 49-430 1-373 (409)
63 COG1953 FUI1 Cytosine/uracil/t 98.7 0.00085 1.8E-08 70.9 39.0 364 46-432 36-418 (497)
64 TIGR00800 ncs1 NCS1 nucleoside 98.7 0.00046 1E-08 74.4 38.7 241 46-299 9-257 (442)
65 TIGR00813 sss transporter, SSS 98.6 0.00023 4.9E-09 76.0 35.9 301 48-369 2-333 (407)
66 PRK09442 panF sodium/panthothe 98.6 0.00048 1E-08 75.1 38.9 300 48-368 40-357 (483)
67 TIGR02119 panF sodium/pantothe 98.6 0.00048 1E-08 75.0 38.3 300 48-369 39-357 (471)
68 PRK11017 codB cytosine permeas 98.5 0.003 6.5E-08 67.2 41.3 228 47-301 7-236 (404)
69 PF05525 Branch_AA_trans: Bran 98.5 0.00048 1E-08 72.6 32.3 333 57-429 9-362 (427)
70 COG0733 Na+-dependent transpor 98.4 0.00042 9.1E-09 72.3 29.3 291 53-349 11-322 (439)
71 PF01566 Nramp: Natural resist 98.3 0.00091 2E-08 70.0 30.2 256 78-362 8-285 (358)
72 PRK15433 branched-chain amino 98.3 0.00095 2.1E-08 70.4 29.4 333 54-429 11-365 (439)
73 COG0591 PutP Na+/proline sympo 98.3 0.0033 7.2E-08 68.6 34.3 300 48-369 37-364 (493)
74 PRK12488 acetate permease; Pro 98.3 0.011 2.4E-07 65.5 38.4 154 48-221 66-221 (549)
75 PF00474 SSF: Sodium:solute sy 98.3 0.00013 2.8E-09 77.9 21.7 298 48-368 5-330 (406)
76 TIGR02711 symport_actP cation/ 98.2 0.018 3.9E-07 63.8 39.0 298 48-367 66-391 (549)
77 TIGR02121 Na_Pro_sym sodium/pr 98.2 0.02 4.4E-07 62.5 37.4 294 48-367 35-355 (487)
78 COG1114 BrnQ Branched-chain am 98.1 0.0061 1.3E-07 62.9 29.5 344 52-430 6-365 (431)
79 KOG1305 Amino acid transporter 98.1 0.00037 8E-09 73.6 21.2 250 48-312 3-258 (411)
80 PRK09395 actP acetate permease 98.1 0.029 6.4E-07 62.2 39.5 153 47-221 67-223 (551)
81 PRK15419 proline:sodium sympor 98.1 0.03 6.5E-07 61.4 38.4 294 48-367 39-362 (502)
82 TIGR03648 Na_symport_lg probab 98.1 0.033 7.2E-07 61.8 36.6 148 48-217 31-182 (552)
83 PRK00701 manganese transport p 98.0 0.035 7.5E-07 59.6 33.1 92 63-159 46-139 (439)
84 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.042 9.1E-07 58.0 33.2 90 48-140 14-103 (416)
85 TIGR02358 thia_cytX probable h 97.9 0.046 1E-06 57.8 35.2 246 84-362 30-276 (386)
86 PRK10484 putative transporter; 97.8 0.097 2.1E-06 57.8 44.6 298 48-362 37-359 (523)
87 PLN00151 potassium transporter 97.7 0.0048 1E-07 68.8 22.2 216 181-412 274-503 (852)
88 PF02028 BCCT: BCCT family tra 97.5 0.22 4.7E-06 54.0 33.4 90 331-429 390-484 (485)
89 PLN00150 potassium ion transpo 97.4 0.044 9.5E-07 61.3 23.6 216 181-412 214-443 (779)
90 PF02133 Transp_cyt_pur: Perme 97.3 0.0057 1.2E-07 66.0 16.2 167 47-218 5-174 (440)
91 PF02705 K_trans: K+ potassium 97.3 0.15 3.3E-06 55.2 25.6 222 180-419 131-367 (534)
92 PLN00149 potassium transporter 97.2 0.3 6.4E-06 55.0 27.0 217 183-412 200-430 (779)
93 PLN00148 potassium transporter 96.9 0.54 1.2E-05 53.0 25.6 217 180-412 196-426 (785)
94 COG4147 DhlC Predicted symport 96.6 1.3 2.7E-05 47.0 24.7 293 81-398 75-410 (529)
95 TIGR00794 kup potassium uptake 96.2 0.29 6.2E-06 54.6 18.2 215 180-412 167-397 (688)
96 PF00209 SNF: Sodium:neurotran 95.9 1.3 2.9E-05 48.8 22.0 109 194-304 193-304 (523)
97 PRK10745 trkD potassium transp 95.8 0.94 2E-05 49.9 19.6 213 181-412 143-371 (622)
98 PRK09950 putative transporter; 95.5 4.7 0.0001 43.9 34.4 91 331-427 400-496 (506)
99 COG4145 PanF Na+/panthothenate 95.4 3.8 8.2E-05 42.1 24.7 277 48-351 38-338 (473)
100 COG1292 BetT Choline-glycine b 95.4 4.9 0.00011 43.4 30.0 100 322-429 394-497 (537)
101 PRK09928 choline transport pro 95.3 6.5 0.00014 44.2 32.5 94 331-428 407-503 (679)
102 TIGR01197 nramp NRAMP (natural 95.3 4.8 0.0001 42.5 34.2 43 319-361 282-324 (390)
103 KOG4303 Vesicular inhibitory a 95.1 0.14 3E-06 51.5 9.6 234 46-303 112-355 (524)
104 PF02554 CstA: Carbon starvati 94.8 5.8 0.00013 41.0 22.7 96 50-147 51-147 (376)
105 KOG2466 Uridine permease/thiam 93.9 6.5 0.00014 41.9 18.8 169 46-225 51-230 (572)
106 PRK03356 L-carnitine/gamma-but 93.8 12 0.00027 40.7 35.5 93 331-429 403-500 (504)
107 COG3158 Kup K+ transporter [In 92.2 13 0.00028 40.4 18.3 98 178-285 145-251 (627)
108 KOG3660 Sodium-neurotransmitte 92.0 25 0.00054 39.5 23.1 86 52-138 39-126 (629)
109 PRK15033 tricarballylate utili 89.1 5.8 0.00012 41.3 12.1 68 362-429 103-188 (389)
110 TIGR00842 bcct choline/carniti 87.4 46 0.001 35.9 35.1 91 331-427 354-450 (453)
111 TIGR02484 CitB CitB domain pro 83.8 8.8 0.00019 39.8 10.2 21 534-554 255-275 (372)
112 KOG3659 Sodium-neurotransmitte 76.0 1.2E+02 0.0026 33.6 15.9 124 179-304 252-378 (629)
113 PRK15015 carbon starvation pro 71.3 1.8E+02 0.004 32.7 30.5 96 51-148 83-179 (701)
114 COG1966 CstA Carbon starvation 69.0 1.9E+02 0.004 31.9 27.2 102 51-153 52-153 (575)
115 PTZ00206 amino acid transporte 59.0 1.1E+02 0.0024 33.2 11.9 56 316-371 120-175 (467)
116 COG3949 Uncharacterized membra 52.0 2.9E+02 0.0062 28.5 15.4 114 287-419 39-153 (349)
117 PF01102 Glycophorin_A: Glycop 49.0 18 0.00039 31.3 3.0 33 527-559 62-94 (122)
118 PF14150 YesK: YesK-like prote 46.5 1.1E+02 0.0024 24.4 6.8 45 507-551 30-74 (81)
119 KOG2349 Na+:iodide/myo-inosito 44.0 3.3E+02 0.0071 30.4 12.4 40 329-368 331-370 (585)
120 PF14256 YwiC: YwiC-like prote 43.6 2.2E+02 0.0049 24.8 10.0 47 384-430 6-52 (129)
121 PF11174 DUF2970: Protein of u 39.7 87 0.0019 23.0 5.0 44 253-299 3-46 (56)
122 PF05545 FixQ: Cbb3-type cytoc 39.3 36 0.00079 24.1 2.9 23 536-558 13-35 (49)
123 PRK11383 hypothetical protein; 32.4 3.6E+02 0.0078 23.9 10.2 50 384-433 78-128 (145)
124 COG4025 Predicted membrane pro 31.4 3.9E+02 0.0084 25.9 9.0 16 353-368 55-70 (284)
125 PRK11380 hypothetical protein; 29.3 47 0.001 33.9 2.9 58 491-548 26-84 (353)
126 PF05915 DUF872: Eukaryotic pr 28.3 2.7E+02 0.0058 23.9 6.9 62 52-113 40-104 (115)
127 COG2271 UhpC Sugar phosphate p 27.8 3.8E+02 0.0081 28.8 9.2 46 342-396 67-112 (448)
128 PF08693 SKG6: Transmembrane a 27.3 50 0.0011 22.4 1.8 16 542-557 24-39 (40)
129 PRK00968 tetrahydromethanopter 25.9 79 0.0017 29.9 3.5 32 271-302 203-235 (240)
130 PRK06531 yajC preprotein trans 24.5 33 0.00073 29.2 0.8 18 542-559 9-26 (113)
131 PF11947 DUF3464: Protein of u 24.0 2E+02 0.0043 26.0 5.6 65 55-120 65-135 (153)
132 PF04478 Mid2: Mid2 like cell 24.0 67 0.0015 28.8 2.6 14 558-571 77-90 (154)
133 COG4736 CcoQ Cbb3-type cytochr 23.6 73 0.0016 23.8 2.3 21 537-557 14-34 (60)
134 PF03806 ABG_transport: AbgT p 23.6 1E+03 0.022 26.2 11.9 43 92-134 303-345 (502)
135 PF03595 SLAC1: Voltage-depend 22.1 6.9E+02 0.015 25.3 10.2 24 401-424 31-54 (330)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=6.5e-53 Score=461.65 Aligned_cols=406 Identities=47% Similarity=0.803 Sum_probs=345.7
Q ss_pred hhhhhhhhccccCcccCCCcccccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHH
Q 007966 22 CCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAF 101 (583)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l 101 (583)
+..+++.|+|+.+++ .+++++++|+++.+|+++++++.++|+|+|..++.++.+.+|++.+++|+++++..++.++
T Consensus 5 ~~~~~~~r~k~~~~~----~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al 80 (557)
T TIGR00906 5 TFARCLIRRKIVDLD----SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80 (557)
T ss_pred HHHHHHhccCCcccc----cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 445667777777652 1123468999999999999999999999999999877677899999999999999999999
Q ss_pred HHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-hh-hhhhhccCCCCcc
Q 007966 102 CYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS-LP-FFMARQQIPGLGI 179 (583)
Q Consensus 102 ~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 179 (583)
+++|+++++|++||.|.|+++.+|+.+||+++|.+++.|....+..+.+.+.++...+..... .. .... ...+....
T Consensus 81 ~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~~ 159 (557)
T TIGR00906 81 CYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAE 159 (557)
T ss_pred HHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCcccc
Confidence 999999999999999999999999999999999999999999999888888888776642100 00 0000 00011111
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCCCCCCCchhhhHHHHHHH
Q 007966 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSAT 257 (583)
Q Consensus 180 ~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 257 (583)
....++++++++++.+|.+|+|..++++++.+.++++.++++++.++.....+++.. ....+++.|.++.+++.+...
T Consensus 160 ~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~ 239 (557)
T TIGR00906 160 YPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAAT 239 (557)
T ss_pred cchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHH
Confidence 223567777888899999999999999999999999998888888775433333321 111235667777889999999
Q ss_pred HHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHH
Q 007966 258 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITI 337 (583)
Q Consensus 258 ~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~ 337 (583)
.+|+|.|+|.+++++||+|||+||+||+++.+.++++++|++.++++....|+++++.++|+..+++..+.++...++.+
T Consensus 240 ~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~ 319 (557)
T TIGR00906 240 CFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAV 319 (557)
T ss_pred HHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999998888888899999
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 007966 338 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT 417 (583)
Q Consensus 338 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~ 417 (583)
+.+.+.++++++.+++.+|++++|+|||.+|++|+|+|+|+++|++++++.++++.++.++.+.+.+.++.+++.++.|.
T Consensus 320 ~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~ 399 (557)
T TIGR00906 320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYS 399 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 007966 418 MVAISVLILRYVPPD 432 (583)
Q Consensus 418 ~~~~a~i~lr~~~~~ 432 (583)
+++++.+++|++++.
T Consensus 400 lv~~~~l~lR~~~~~ 414 (557)
T TIGR00906 400 LVAACVLILRYQPGL 414 (557)
T ss_pred HHHHHHHHhhccccc
Confidence 999999999987543
No 2
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-50 Score=414.79 Aligned_cols=385 Identities=26% Similarity=0.389 Sum_probs=330.1
Q ss_pred cccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHH
Q 007966 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (583)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~ 121 (583)
++.+++||++.++++.+.+++++|+|+|..|..+..+.+..+ ++..|++.++++++.+++|+|+|+++|++||+|.|++
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHH
Confidence 334579999999999999999999999999999764444444 8888999999999999999999999999999999999
Q ss_pred HHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhh
Q 007966 122 ICVGEGVAWLIGWALILEYTIGG-SAVARGISPN-LAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (583)
Q Consensus 122 ~~~g~~~g~~~~~~~~~~~~~~~-a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~g 199 (583)
|++|+.+||...|.-++...+.. +..+..++++ +...+. . ........++++.+++++++++|+..
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~-----------c~~p~~~~~lla~~~l~~lt~~n~~~ 153 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L-----------CDVPRVASKLLAAALLVLLTLINSFS 153 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C-----------CCCchHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999887776665 7777777777 333332 1 12334455678999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC-CCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCc
Q 007966 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (583)
Q Consensus 200 vk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP 278 (583)
+|+..++|.+++..|++.+.++++.+++.....+..++.+++ .........+..++....|+|.|||..+..+||+|||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 999999999999999999999999999855444433333221 0111223447789999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 007966 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRI 357 (583)
Q Consensus 279 ~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 357 (583)
+||+|||+..++.++++.|++.++++..++++||+.+++.++.-|.+. +|.+. +.+.+.+.++.++++++.+.+.||.
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~ 312 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRL 312 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999987667776667666 55555 9999999999999999999999999
Q ss_pred HHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCc
Q 007966 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPV 436 (583)
Q Consensus 358 l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~-~~~~ 436 (583)
+++++|||++|+.|++.|++..+|..++++++.+++++.+.+++++++|..+....+.+.+..++++++|+|+|+ .||+
T Consensus 313 ~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPi 392 (479)
T KOG1287|consen 313 FYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPI 392 (479)
T ss_pred HHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCE
Confidence 999999999999999999997799999999999999999999999999999999999999999999999999988 3554
Q ss_pred cccc
Q 007966 437 PSTL 440 (583)
Q Consensus 437 ~~~~ 440 (583)
|.+.
T Consensus 393 Kvpl 396 (479)
T KOG1287|consen 393 KVPL 396 (479)
T ss_pred eeee
Confidence 4444
No 3
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=7.4e-48 Score=417.94 Aligned_cols=369 Identities=24% Similarity=0.382 Sum_probs=307.9
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
+++|+++.+++.+++++.++|+|+|..++... ..+|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G 103 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLG 103 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999999865 67888888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|+.||+++|.||+.|...........+.+... +..... .....+.++++++++++|.+|+|...+
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~~~~--------------~~~~~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHY-WGAFGG--------------VPQWVFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876655444333333321 110000 111234677788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccC--------CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhC
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTG--------WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~kn 277 (583)
++.+.+.++++.++.+++.++....... +....++.++.|+++.+++.++...+|+|.|+|.++++++|+||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 9999999998887777666654211111 11111223455666777777788899999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 278 P~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
|+|++|||+..+...++++|++..+++...+|.+++. ..+|+.+++++.|.++...++.+..+++.+++.++.+++.+|
T Consensus 249 P~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 249 PQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988874 347899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh---h---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---M---DVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~---~---~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
+++++||||.+|++|+|+||+ ++|.+|++++++++++..++ . .++++.++.+...++.|.++.++.+++|++.
T Consensus 329 ~l~a~Ardg~lP~~f~kv~k~-~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~ 407 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMSRQ-HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAI 407 (499)
T ss_pred HHHHHHhcCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999976 99999999988876543222 1 2778999999999999999999999998764
Q ss_pred C
Q 007966 431 P 431 (583)
Q Consensus 431 ~ 431 (583)
+
T Consensus 408 ~ 408 (499)
T PRK15049 408 K 408 (499)
T ss_pred h
Confidence 4
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.3e-47 Score=412.97 Aligned_cols=369 Identities=22% Similarity=0.388 Sum_probs=311.8
Q ss_pred ccccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHH
Q 007966 42 RSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (583)
Q Consensus 42 ~~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~ 121 (583)
+++++++|+++.+++.+++++.++|+|+|..++... +.+|+.++++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~ 92 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAY 92 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 334468999999999999999999999999999855 6788899999999999999999999999999999999999999
Q ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhH
Q 007966 122 ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (583)
Q Consensus 122 ~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk 201 (583)
+.+|+.+||+++|.||+.+....+........+++..+.. . ....+.++++++.+++|.+|+|
T Consensus 93 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~---~--------------~~~~~~~~~~~l~~~lN~~gv~ 155 (458)
T PRK10249 93 KYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD---V--------------PTWIWAAAFFIIINAVNLVNVR 155 (458)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---C--------------cHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999877666665555555433210 0 1113467778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---C---CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKT---G---WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 202 ~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
..++++.+.+.++++.++.+++.++...... . .++..+..+..|+++.+++.++...+|+|.|+|.+++++||+
T Consensus 156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 235 (458)
T PRK10249 156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA 235 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999887777766655421111 1 111111123345677888999999999999999999999999
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 354 (583)
|||+|++||++..+...++++|++..+++....|++++.. ++|+.+++++.++++...++.+..+++.+++.++.+++.
T Consensus 236 ~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 236 RDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887643 479999999988888888899999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007966 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (583)
Q Consensus 355 sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~ 428 (583)
+|++++++|||.+|++|+|+||+ ++|++|++++.+++.+..++. .++++.++.+...++.|.+.+.+++++|+
T Consensus 316 sR~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977 999999999999988765442 26788999999999999999999999986
Q ss_pred c
Q 007966 429 V 429 (583)
Q Consensus 429 ~ 429 (583)
+
T Consensus 395 ~ 395 (458)
T PRK10249 395 A 395 (458)
T ss_pred H
Confidence 4
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.2e-47 Score=413.08 Aligned_cols=367 Identities=20% Similarity=0.377 Sum_probs=303.3
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~-~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
+++|+++.+++.+++++.++|+|+|..++... +.+|+ +.+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~ 89 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYL 89 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Confidence 58999999999999999999999999999865 55676 58999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
||.+||.++|.+|+++....+........+++..+. ..+ .....+++.++++++|++|+|..+
T Consensus 90 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p---------------~~~--~~~~~~~~~~~~~~in~~gvk~~~ 152 (471)
T PRK11387 90 GPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP---------------QVP--VWPWCLLFCALIFGLNVVSTRFFA 152 (471)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------cCc--HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999988776655444433332211 111 112344556678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc-----c-C----CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhh
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFK-----T-G----WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~-----~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E 274 (583)
+++.+...++++.++.+++.++..... + + +++++ .+++.|++..+++.++...+|+|.|+|.+++++||
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999998887777766542110 0 0 11111 12344555567888888899999999999999999
Q ss_pred hhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007966 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (583)
Q Consensus 275 ~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 353 (583)
+|||+|++|||+..+..+++++|++.++++....|.++.. .++|..+++++.++++...++.+..+++.+++.++++++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 354 ~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
.||++++++|||.+|++|+|+||+ ++|+++++++.+++.+..+.. .++.+.++.+...++.|++++++++++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 999999998876655433321 1446788888999999999999999999
Q ss_pred ccCCC
Q 007966 428 YVPPD 432 (583)
Q Consensus 428 ~~~~~ 432 (583)
+++++
T Consensus 391 ~~~~~ 395 (471)
T PRK11387 391 RRHLR 395 (471)
T ss_pred HHHHh
Confidence 87654
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=9.5e-48 Score=413.58 Aligned_cols=379 Identities=26% Similarity=0.367 Sum_probs=307.0
Q ss_pred cccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 45 ~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
++++|+++.++++.++++.++|+|+|..++.++...+++. .+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 4689999999999999999999999999988665556665 889999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 124 VGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 124 ~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
+||.+|++.+|..+ .......+..+....+++...+ ++.......++++++.+++.+|.+|+|.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~---------------~~~~~~~~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT---------------PIDPLLGKFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999744 4445555555555555554322 1111222345666677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc-hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCc
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~ 281 (583)
..++|++.+..+++.++++++.++......++.+... ...... .+.+++.++...+|+|.|+|.+++++||+|||+||
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTT-TAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCc-ccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 9999999999999988777776654322222211110 000111 24567788889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHc--chhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007966 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASH--GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (583)
Q Consensus 282 ~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~--g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 358 (583)
+||++..+..+++++|++.++++....|.+++. +++|..++++.. .+++...++.+...++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999999888888764 356888877764 34556667777888889999999999999999
Q ss_pred HHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 007966 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPS 438 (583)
Q Consensus 359 ~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~~~~~~~ 438 (583)
++++|||.+|++|+|+|+|+++|++++++++++++++.+..+++.+.++.+....+.|.+...+++++|+++++++|+|.
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~ 387 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRT 387 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCccc
Confidence 99999999999999999888999999999999999888788999999999999999999999999988876554455443
Q ss_pred c
Q 007966 439 T 439 (583)
Q Consensus 439 ~ 439 (583)
+
T Consensus 388 p 388 (445)
T PRK11357 388 P 388 (445)
T ss_pred C
Confidence 3
No 7
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.8e-46 Score=403.92 Aligned_cols=369 Identities=23% Similarity=0.335 Sum_probs=310.8
Q ss_pred cccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 45 ~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
++++|+++.+++.++++++++|+|+|..++... ..+||+++++|++++++.++.+++++|+++++|++||.|.|++|.+
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~ 84 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYM 84 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 458999999999999999999999999999854 6789999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
||.+||.++|.||+.|....+....+.+.+++..+.. .+ ......+++++++.+|++|+|..+
T Consensus 85 g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~--------------~~~~~~~~~~~~~~lN~~gv~~~~ 147 (461)
T PRK10746 85 SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MA--------------QWIPALIAVALVALANLAAVRLYG 147 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---Cc--------------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999888777766666665543311 11 113455667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cccc-----CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhh
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYL---GFKT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~k 276 (583)
+++...+.+|++.++.+++.++.. ...+ +++++.++.+..|+++.++..++...+|+|.|+|.++..++|+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 999999999988877776665532 1111 11222222334566788899999999999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007966 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (583)
Q Consensus 277 nP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~s 355 (583)
||+|++|||+..+...+.++|++..+++...+|+++++. ++|+.+++++.+.+....++.+..+++.+++.++.+++.|
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998754 4699999999988888889999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHH---H-hh----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA---F-FM----DVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 356 R~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~---~-~~----~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
|++++++|||.+|++|+|+||+ |+|++++++..+...+.. . .+ .++++.++.+...++.|..++++++++|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977 999999988754433211 1 11 2567999999999999999999999999
Q ss_pred ccCCC
Q 007966 428 YVPPD 432 (583)
Q Consensus 428 ~~~~~ 432 (583)
+++|+
T Consensus 387 ~~~~~ 391 (461)
T PRK10746 387 RAHKA 391 (461)
T ss_pred Hhccc
Confidence 98775
No 8
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.9e-46 Score=402.84 Aligned_cols=365 Identities=18% Similarity=0.317 Sum_probs=304.1
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
++|+++.++++.+.+++++|+|+|..++.++ ..|+..+++|++++++.++.+++++|+++++|++||.|.|++|.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5789999999999999999999999988754 35778889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i 206 (583)
..||+++|.||+.+.......+.....+....+..+ .......++.++++++++.+|.+|+|...++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT-------------LSPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999988765555555555555444211 1112233456677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchh
Q 007966 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (583)
Q Consensus 207 ~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p 283 (583)
+++....+++.++++++.+......++ +.+ .+.+. .+.++..++...+|+|.|+|.+++++||+|||+||+|
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 223 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSL---YVA--AWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc---ccC--CcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccccc
Confidence 999988888877777666654321111 111 11121 2356777788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007966 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 284 ~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
|++..+..+++++|++.+.+.....|++++. +++|..+++++..+++...++.+..+++.+++.++++.+.+|++++++
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a 303 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSA 303 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888888887764 357888888888888888888888999999999999999999999999
Q ss_pred hcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 363 ~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~-------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
|||.+|++|+|+||+ ++|+++++++++++.++.+.. .++++.++.+....+.|.+..++.+++|+|+++
T Consensus 304 ~dg~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~ 379 (438)
T PRK10655 304 DEGYFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANV 379 (438)
T ss_pred cCCchhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999977 999999999999887655432 367899999999999999999999999988754
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=2.2e-46 Score=402.85 Aligned_cols=369 Identities=21% Similarity=0.307 Sum_probs=303.0
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
+++|+++.++++++.++.++|+|+|..++.++ .. |+..+++|+++++..++.+++++|+++++|++||.|.|+++.+|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-ST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 46899999999999999999999999998754 33 55678999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|.+||+++|.+|+.+.............+.+..+... ..++...++.++++++++++|.+|+|...+
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------------KDPLVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------CCcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999887665555544445554433210 011222345677778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
++++.+.++++.++.+++.++.....+.+....+..+ ..++.++..++...+|+|.|+|.+++++||+|||+|++||+
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 9999999998877777666654211111111000111 12345667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhc
Q 007966 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (583)
Q Consensus 286 ~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 364 (583)
++.+..+++++|++.++++....|++++. ++.|..+++++..+++...++.+..+++.+++.++++...+|+.++++||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888764 45788888888877888788888888999999999999999999999999
Q ss_pred CCCcccccccccccCCchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 365 g~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~-------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
|.+|++|+|+||+ ++|+++++++++++.++.+.. .++++.++.+...++.|++..++.+++|+|+++
T Consensus 308 g~lP~~~~~v~~~-~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~ 381 (445)
T PRK10644 308 GLFPPIFARVNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG 381 (445)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999999999986 999999999999988765542 377899999999999999999999999877653
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.7e-46 Score=402.47 Aligned_cols=369 Identities=22% Similarity=0.413 Sum_probs=313.2
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
+++|+++.+++.++++++++|+|+|..++... +.+|+.++++|++++++.++.+++++|+++++|.+||.|+|++|.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 58999999999999999999999999999865 66788999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|..||+++|.+|+.+....+........+++..+. ..+ .....++++++++.+|..|+|..++
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~--------------~~~~~~i~~~~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP---EIP--------------TWVSAAVFFVVINAINLTNVKVFGE 150 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cCc--------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999888877776666654431 111 1134566677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc--cC----CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcC
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFK--TG----WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~ 279 (583)
++.+...++++.++.+++.++..... ++ ..+..+..++.|+++.++..++...+|+|.|+|.+++++||+|||+
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~ 230 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence 99999999998877666654432111 11 1111112334466677788888889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007966 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (583)
Q Consensus 280 k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 358 (583)
|++|||+..+...+.++|++.........|.+++.. ++|+.+++++.+.++...++.+.++++.+++.++++++.||++
T Consensus 231 r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l 310 (456)
T PRK10238 231 QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRML 310 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887888887743 4799999999988888889999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 359 ~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
++++|||.+|++|+|+||+ ++|++|++++++++.+..++. .++++.++.+.+.++.|.+..++.+++||++++
T Consensus 311 ~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 311 FGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred HHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987 999999999999887665542 267899999999999999999999999987655
Q ss_pred C
Q 007966 433 E 433 (583)
Q Consensus 433 ~ 433 (583)
+
T Consensus 390 ~ 390 (456)
T PRK10238 390 Q 390 (456)
T ss_pred c
Confidence 3
No 11
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=6.1e-46 Score=401.39 Aligned_cols=370 Identities=23% Similarity=0.378 Sum_probs=310.8
Q ss_pred cccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 45 ~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
++++|+++.+++.+++++.++|+|+|..++... +.+|+..+++|++++++.++.+++++|+++..|..||.|.|+++.+
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLL 94 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 458999999999999999999999999999865 6678888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
||..||+++|.+|+.+.......+..+..+++..+.. .+ ....+++++++++++|.+|+|..+
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~---~~--------------~~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD---LS--------------DWVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Cc--------------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999876666666666555543321 00 113456677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc-----c-C---CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFK-----T-G---WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
++|++.+.++++.++.+++.++..... + . +.+..+..++.|+++.+++.++...+|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 999999999998888887777653211 1 0 111112233456677789999999999999999999999999
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 354 (583)
|||+|++||++..+.+.+.++|++.++++....|.+++. .++|..++++..++++...++.+..+++.+++.++.+.+.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888899999999999998888888874 3478888888888888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHH---HHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFF-M----DVSALAGMVSVGTLLAFTMVAISVLIL 426 (583)
Q Consensus 355 sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il---~~~-~----~~~~l~~l~~~~~~~~~~~~~~a~i~l 426 (583)
+|++++++|||.+|++|+|+||+ ++|++++++++++..+. ... + .++.+.++.+....+.|.+.+++++++
T Consensus 318 sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~l 396 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVY 396 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 99999999988765431 122 2 256788888889999999999999999
Q ss_pred hccCCCC
Q 007966 427 RYVPPDE 433 (583)
Q Consensus 427 r~~~~~~ 433 (583)
|+|+||.
T Consensus 397 r~~~p~~ 403 (469)
T PRK11049 397 RKQRPHL 403 (469)
T ss_pred HHhhhhc
Confidence 9987763
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=4.4e-46 Score=401.41 Aligned_cols=368 Identities=22% Similarity=0.344 Sum_probs=309.8
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
+++|+++.+++.++.++.++|+|+|..++... ..+|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g 87 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIG 87 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 48999999999999999999999999998855 56788888899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|.+|++++|.+|+.+....+........++...+.+ . ....++++++++++.+|.+|+|..++
T Consensus 88 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--------------~~~~~~~~~~~~~~~~n~~gv~~~~~ 150 (452)
T TIGR01773 88 RWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD---I--------------PLWLFSLILTIVLTLTNLYSVKSYGE 150 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---C--------------cHHHHHHHHHHHHHHHHHHhcchhhH
Confidence 999999999999999988888777766666544311 1 11245777788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--cc--C---CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCc
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGF--KT--G---WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~--~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP 278 (583)
++.+.+.++++.++.+++.++.... .. . +.+..+..++.|+++.+++.++...+|+|.|+|.+++++||+|||
T Consensus 151 ~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P 230 (452)
T TIGR01773 151 FEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh
Confidence 9999999999888777666553211 11 1 112222233445667779999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 279 ~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~--~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
+|++||++..+...++++|++..+......|.++.+ +++|..++.+..++++...++.+..+++.+++.++.+++.+|
T Consensus 231 ~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR 310 (452)
T TIGR01773 231 IKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSR 310 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888766542 234788888888888888889999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh--C----HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D----VSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~--~----~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
++++++|||.+|++|+|+||+ ++|.+|++++.+++.+..++. + ++++.++.+...++.|.+++++.+++|+++
T Consensus 311 ~~~a~ardg~lP~~~~~v~~~-~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~ 389 (452)
T TIGR01773 311 MLYSLAERGDAPRVFMKLNKK-GVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKL 389 (452)
T ss_pred HHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 999999999998888655442 1 456888888888999999999999999876
Q ss_pred CC
Q 007966 431 PD 432 (583)
Q Consensus 431 ~~ 432 (583)
|+
T Consensus 390 ~~ 391 (452)
T TIGR01773 390 KA 391 (452)
T ss_pred Hh
Confidence 55
No 13
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.2e-45 Score=401.15 Aligned_cols=368 Identities=22% Similarity=0.366 Sum_probs=298.5
Q ss_pred cccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHH
Q 007966 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (583)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~ 121 (583)
|.++++|+++.+++.++++++++|+|+|..++..+ +.+|+. ++++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 33568999999999999999999999999999865 567886 8999999999999999999999999999999999999
Q ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhH
Q 007966 122 ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (583)
Q Consensus 122 ~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk 201 (583)
+.+|+.+|++++|.+|+.+....+.........++..+ +..+. .....+++.+++.+|.+|+|
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~lN~~gv~ 150 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWF---------------PDTPG--WIWSALFLGVIFLLNYISVR 150 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------------CCCch--HHHHHHHHHHHHHHHHHcch
Confidence 99999999999999999876655433322222222111 11111 12355666677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccc----CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhh
Q 007966 202 ESTIAQAIVTTANVLAMLFVIIAGSYLG---FKT----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (583)
Q Consensus 202 ~~~~i~~~~~~~~ii~~~~~ii~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E 274 (583)
..++++.+.+..|+..++.+++.++... .++ ++.++++..+..+.++.+++.+....+|+|.|+|.+++++||
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999999999988777666555421 111 111221111112334556666666678999999999999999
Q ss_pred hhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCChHHHHHHHcchhHHHHHHHHHHHHHHHH
Q 007966 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCS 345 (583)
Q Consensus 275 ~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~---------~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 345 (583)
+|||+|++|||+..+...+.++|++.++++...+|.++.+ ..+|+..++++.+.++...++.+..+++.++
T Consensus 231 ~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~ 310 (489)
T PRK10836 231 SEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLS 310 (489)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888866531 1357788888888888888999999999999
Q ss_pred HHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHH
Q 007966 346 TLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMV 419 (583)
Q Consensus 346 ~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~ 419 (583)
+.++.+++.+|++++++|||.+|++|+|+||+ ++|++|++++++++.+..+.. .++++.++.+...++.|+.+
T Consensus 311 ~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 389 (489)
T PRK10836 311 AGNSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGI 389 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999977 999999999999888765542 14678899999999999999
Q ss_pred HHHHHHHhcc
Q 007966 420 AISVLILRYV 429 (583)
Q Consensus 420 ~~a~i~lr~~ 429 (583)
+++.+++||+
T Consensus 390 ~~a~l~~R~~ 399 (489)
T PRK10836 390 AISHYRFRRG 399 (489)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 14
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=4.2e-45 Score=394.01 Aligned_cols=370 Identities=22% Similarity=0.379 Sum_probs=304.6
Q ss_pred ccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 44 ~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
+++++|+++.+++.++++++++|+|+|..++... ..+|++++++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3468999999999999999999999999998854 578889999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
+||.+|++++|.+|+.+.............+.+..+. ..+ . ....+++++++..+|.+|+|..
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~--~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP---TVP------------H--WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCC------------h--HHHHHHHHHHHHHHHHccchhH
Confidence 9999999999999999877666655555555543321 011 1 1235556677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---cccc--CC---CCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 204 TIAQAIVTTANVLAMLFVIIAGSYL---GFKT--GW---SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~~~~ii~~~~~---~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
.+++.+.+.+++..++++++.++.. ...+ +. .+..++++..|+++.+++.++...+|+|.|+|.++++++|+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999998877776655421 1111 10 01111123345667788889999999999999999999999
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 354 (583)
|||+|++|||+..+.+.+.++|++..+......|.+++.. +.|...+++..|.++...++.+..+.+.+++.++++.+.
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888888753 468877888888888888888888999999999999999
Q ss_pred hHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh---h---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007966 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---M---DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (583)
Q Consensus 355 sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~---~---~~~~l~~l~~~~~~~~~~~~~~a~i~lr~ 428 (583)
+|++++++|||.+|++|+|+||+ ++|++++++++++..+...+ . .++.+.++.+....+.|.+.+++.+++|+
T Consensus 306 sR~~~~~ardg~lP~~~~kv~~~-~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTSRR-GIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 99999999997755543222 1 25678999999999999999999999998
Q ss_pred cCCC
Q 007966 429 VPPD 432 (583)
Q Consensus 429 ~~~~ 432 (583)
++++
T Consensus 385 ~~~~ 388 (457)
T PRK10580 385 RLPP 388 (457)
T ss_pred HHHh
Confidence 7544
No 15
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.6e-45 Score=396.05 Aligned_cols=370 Identities=22% Similarity=0.375 Sum_probs=306.9
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcC-CCchhhhHHHHh
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~-~GG~y~~~~~~~ 124 (583)
++|++|.+++.++.+++++|+|+|..+..++ ..+|+. .+++|++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 4789999999999999999999999998865 567776 7899999999999999999999999999 999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
||+.|++++|.+|+.+.......+.....+++..+.... ....+...+.+++++++++.+|.+|+|...
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----------SGNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999998887766666555556555442110 011122234567777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CCCCC-CCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCch
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWS-GYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~ 282 (583)
|+|.+...++++.++++++.++.....+++. ++.+. .+..+..+.++..++...+|+|.|+|.++++++|+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988888777776432111111 11111 0011224556788888999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~-~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
||++..+..+++++|++.+++.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.+|++++
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888763 4567 667777777888888999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 361 ~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~-----~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
|+|||.+|++|+|+||| ++|+++++++++++.++.++ ..++++.++.+...++.|.+.+++.+++|+|+
T Consensus 312 mardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 99999999999988765443 35788999999999999999999999998775
No 16
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2.5e-45 Score=400.25 Aligned_cols=378 Identities=24% Similarity=0.362 Sum_probs=300.9
Q ss_pred cccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhH
Q 007966 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120 (583)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~-~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~ 120 (583)
++++++|+++.++++++++++++|+|+|..++.+. ..+|+ + .++.|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 45679999999999999999999999999998865 44555 4 568899999999999999999999999999999999
Q ss_pred HHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHh
Q 007966 121 YICVGEGVAWLIGWALILEY-TIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (583)
Q Consensus 121 ~~~~g~~~g~~~~~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~ 198 (583)
++.+||.+|++++|.++... ....+..+..++.++.. .+.+. ....+...+++++++++++++|.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~------------~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC------------EVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887633 23334444444443321 11100 011222345677888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC--CchhhhHHHHHHHHHHHhhhhhHHHhhhhhhh
Q 007966 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF--PFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (583)
Q Consensus 199 gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~k 276 (583)
|+|...+++.+.+.++++.++++++.++.....++....+....+. ..+..++..++...+|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 9999999999999999998888777776532222111111111111 12356778888899999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 277 nP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
||+|++||++..+.++++++|++.++++....|.+++.++++....+.....++...++.+...++.+++.++.+.+.+|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR 342 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSR 342 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888875544443333332212456778888889999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE 433 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~~ 433 (583)
++++++|||.+|++|+|+|+|+++|+++++++++++++....++..++.++.+....+.|.+..++++++|+|+|+.
T Consensus 343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~ 419 (501)
T TIGR00911 343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEM 419 (501)
T ss_pred HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCC
Confidence 99999999999999999998889999999999998887766677888888888999999999999999999987763
No 17
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3.3e-45 Score=393.67 Aligned_cols=377 Identities=25% Similarity=0.348 Sum_probs=305.2
Q ss_pred ccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHH
Q 007966 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (583)
Q Consensus 44 ~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~ 122 (583)
+++++|+++.++.++++++.++| |.+...+.. ...+|+. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~-~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFG-LAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45689999999999999999998 666554432 3456775 78899999999999999999999999999999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 123 ~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
.+||..|++++|.+|+.+....+..+..++++++..+... + ...++++++++++++|.+|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~--------------~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---P--------------GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---c--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888877655211 1 1134667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCC
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGW--SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR 280 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k 280 (583)
.++++.+...++++.++++++.........++ ....+.+++.+.++.+++.++...+|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999988877655544332211000011 0111112344555667888888999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcch--hHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 007966 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGM--HWASYVITIGAVTALCSTLMGSILPQPRI 357 (583)
Q Consensus 281 ~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~--~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 357 (583)
|+||+++.+..++.++|+...+......+.+++. .++|..+++++..+ .+...++.+...++.+++.++.+.+.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887776666766663 45688888877632 45667777888888899999999999999
Q ss_pred HHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCc
Q 007966 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD-EVPV 436 (583)
Q Consensus 358 l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~-~~~~ 436 (583)
+++++|||.+|++|+|+|| +++|++++++++++++++.+..+.+.+.++.+....+.|.+.+++++++|+++|+ ++|+
T Consensus 303 l~a~ardg~lP~~~~~~~~-~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~ 381 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVNR-KKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPY 381 (442)
T ss_pred HHHHHhcCCccHHHHHhCC-CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999999999999995 5999999999999998877777778888999999999999999999999988777 4454
Q ss_pred cccc
Q 007966 437 PSTL 440 (583)
Q Consensus 437 ~~~~ 440 (583)
|.|.
T Consensus 382 ~~p~ 385 (442)
T TIGR00908 382 RTPG 385 (442)
T ss_pred cCCC
Confidence 4443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=7.8e-45 Score=389.28 Aligned_cols=361 Identities=19% Similarity=0.271 Sum_probs=296.9
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.+|+++.++++.+.+++++|+|+|..++.++ ..|+.++++|+++++..++.+++++|+++++|++||.|.|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 5789999999999999999999999999854 3688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i 206 (583)
.+||.++|.||................++...+.... .+....+++++++++++++|.+|+|...++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-------------~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-------------DPIPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-------------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999986655555555555555554432100 011122446677778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCC-CCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 207 QAIVTTANVLAMLFVIIAGSYLGFKTGW-SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 207 ~~~~~~~~ii~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
+.+...++++.++.+++.+......+.. +++. +..+.+..+++.++...+|+|.|+|.++.+++|+|||+||+|||
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrA 223 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWN---TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLA 223 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhccccc---CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHH
Confidence 9988888777666555554432111111 1111 11234467788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhc
Q 007966 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (583)
Q Consensus 286 ~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 364 (583)
+..+..+++++|++.+++.....|+++++ .++|+.+++++.++++...++.+..+++.+++.+++++..+|..++++||
T Consensus 224 i~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ard 303 (435)
T PRK10435 224 TMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAAND 303 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988874 56789888888888999899998899999999999999999999999999
Q ss_pred CCCcccccccccccCCchHHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF------------MDVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 365 g~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~------------~~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
|.+||+|+|+||+ ++|.++++++++++.++... ..++++.++.+...++.|++++++.+++|
T Consensus 304 G~lP~~f~k~nk~-g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 304 GNFPKVYGEVDKN-GIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999976 99999999998877654321 13678999999999999999999988654
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.4e-44 Score=387.77 Aligned_cols=377 Identities=39% Similarity=0.645 Sum_probs=320.4
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
++|+++.++.+.+.++.++|+|++..++... ..+|+..+++|+++++..++.+++++|+++++|++||.|.|++|.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 5799999999999999999999999998855 457888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA-DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
+.|++++|.+++.+....+..+...++++...+... .+.+..... ..+........+++++++++.+|.+|+|..+|
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA--KPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc--CCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999999999999999998888888888877666421 111111100 00111112234677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
++.+.+.++++.++++++.+......+ ++. +..|.+..++..++...+|+|.|+|.+++++||+|||+|++||+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN---NYT---PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH---hcC---CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 999999999988877666655432111 111 12344566788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhc
Q 007966 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (583)
Q Consensus 286 ~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 364 (583)
+..+..+++++|++.+++.....|.+++. +++|...+.++.++++...++.+...++.+++.++.+.+.+|++++++||
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888887764 44677788888888999999999999999999999999999999999999
Q ss_pred CCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 365 g~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
|.+|++|+|+|+|+++|+++++++++++.++....+++.+.++.+...++.|.+.+++++++|+|+||
T Consensus 312 g~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~ 379 (429)
T TIGR00909 312 GLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPD 379 (429)
T ss_pred CCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999888999999999999998887778899999999999999999999999999988776
No 20
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-47 Score=404.71 Aligned_cols=384 Identities=38% Similarity=0.629 Sum_probs=322.2
Q ss_pred cccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcC-CCchhhhHHHH
Q 007966 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYIC 123 (583)
Q Consensus 45 ~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~-~GG~y~~~~~~ 123 (583)
++++|+|+++|+.++++++++|+|+++..+......+|++.+++++++++.+++.+++++|++.++|. +||.|.|.+|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 57999999999999999999999999999998877777779999999999999999999999999999 59999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH-hhhHH
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC-VGIKE 202 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~-~gvk~ 202 (583)
.|+.+||.++|.|++.|+...++.+.+.+..+..+. +.. .........+...+....+++++++.++.+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~~~--~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-GAS--LIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-ccc--cccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 999999999999999999999999999999998876 110 00011111222233333344444444444433 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC---CCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcC
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS---GYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~ 279 (583)
....++++..+.++++.+++..|.....+.+|. .+.++..+.|.++.+++.++....|+|.|+|.++..++|.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 888888888888888777777776543332443 34445668888899999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCChHHHHHH-Hcc---hhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007966 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFA-SHG---MHWASYVITIGAVTALCSTLMGSILP 353 (583)
Q Consensus 280 k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~--l~~~~~~~~~~~-~~g---~~~~~~i~~~~~~~~~~~~~~~~~~~ 353 (583)
|++|+|+..+...+.++|++.++.+..++|+++ ++++.+....|. ..+ .+.+..+++++++++..+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999998 777766666655 444 44445599999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV------SALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 354 ~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~------~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
.||.+++||+||.+||+|+++||+ |+|++|++++.+++++..+..+. ++|+++.+++.++.|..++++.+++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999999 99999999999999988777664 99999999999999999999999999
Q ss_pred ccCCC
Q 007966 428 YVPPD 432 (583)
Q Consensus 428 ~~~~~ 432 (583)
+..+.
T Consensus 422 ~a~~~ 426 (554)
T KOG1286|consen 422 YAMKV 426 (554)
T ss_pred ecccc
Confidence 87544
No 21
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.2e-44 Score=391.05 Aligned_cols=365 Identities=23% Similarity=0.329 Sum_probs=298.2
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcC-CCchhhhHHHHhC
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~-~GG~y~~~~~~~g 125 (583)
+|+++.+++.+++++.++|+|+|..++... +.+|+. .+++|++++++.++.+++++|+++++|+ +||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 588999999999999999999999998865 567875 7899999999999999999999999996 5678889999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|.+||+++|.+|++++...+......+.++..... ..+ . .....+++++++++|.+|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~--~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD---KVN------------P--AVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCC------------H--HHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999998888877776666653221 000 0 112334556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccC-------CCCCCCCCCCCCc----hhhhHHHHHHHHHHHhhhhhHHHhhhhh
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTG-------WSGYELPTGYFPF----GVNGMLAGSATVFFAFIGFDAVASTAEE 274 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~fa~~G~e~~~~~~~E 274 (583)
++++.+.++++.++.+++.++.....+. +..+.+++.+.+. .+.++..++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 9999999998887777666654321110 0111112223222 2567888888999999999999999999
Q ss_pred hhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCC--C-C-------CCChHHHHHHHcchhHHHHHHHHHHHHHHH
Q 007966 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--M-D-------PDTPISSAFASHGMHWASYVITIGAVTALC 344 (583)
Q Consensus 275 ~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~--l-~-------~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~ 344 (583)
+|||+|++|||+..+..+++++|++.++++....|.++ + + ..+|+..+++..+.++...++.+..+++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888664 2 1 125777777778878888899999999999
Q ss_pred HHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHH
Q 007966 345 STLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTM 418 (583)
Q Consensus 345 ~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~ 418 (583)
++.++.+++.+|++++++|||.+|++|+|+||+ ++|.+|++++++++.+..+.. .++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~-~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVDRR-GVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999977 999999999999876543332 2677899999999999999
Q ss_pred HHHHHHHHhccCC
Q 007966 419 VAISVLILRYVPP 431 (583)
Q Consensus 419 ~~~a~i~lr~~~~ 431 (583)
.+++.+++|++++
T Consensus 382 ~~~~~i~~r~~~~ 394 (478)
T TIGR00913 382 ICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 22
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.7e-44 Score=387.38 Aligned_cols=352 Identities=20% Similarity=0.309 Sum_probs=295.9
Q ss_pred HHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHH
Q 007966 59 IGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (583)
Q Consensus 59 l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~ 138 (583)
+++++++|+|+|..++... +.+|+.++++|++++++.++.+++++|+++++|++||.|.|++|.+||.+||..+|.||+
T Consensus 2 ~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 5678999999999998754 667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007966 139 EYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAM 218 (583)
Q Consensus 139 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~ 218 (583)
.++...+.........++... +. .....++++++++++.+|.+|+|..+++|.+.+.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWV---------------PG--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------------cc--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 998887766554444433221 10 1122467888888999999999999999999999999988
Q ss_pred HHHHHHHhhhccc-cCC---C---CCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHH
Q 007966 219 LFVIIAGSYLGFK-TGW---S---GYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALS 291 (583)
Q Consensus 219 ~~~ii~~~~~~~~-~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~ 291 (583)
+.+++.++..... .+. . +..+..+..|+++.++..++...+|+|.|+|.++.+++|+|||+|++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 8877776642111 000 0 11111234566778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCC--CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007966 292 ICCALYMLVSIVIVGLVPYYEMDP--DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (583)
Q Consensus 292 i~~vlyil~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 369 (583)
.+.++|++..+++....|+++.+. ..+...+.+..++++...++.+..+++.+++.++++++.+|++++++|||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999999998876433 245666788888888889999999999999999999999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 370 ~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
+|+|+||+ ++|+++++++.+++.+..+.. .++++.++.+...++.|..+.++.+++||+
T Consensus 304 ~~~~~~~~-~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 304 VMGKINRS-KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999966 999999999988776544432 367899999999999999999999999986
No 23
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=378.34 Aligned_cols=367 Identities=24% Similarity=0.354 Sum_probs=323.5
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
++||+|+.+++.++++++.+|+|.|...+.. ..++||+ +++++++.+++..+...+.+||+..+|.+|+...|.+|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~-l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKA-LSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 5999999999999999999999999999884 5788997 9999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
+|-+||..+|.||+.|....+....+.+..++.++... ....++..++..+..++|..++|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~----------------v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT----------------VPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC----------------CChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998887777766555211 12224577888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCC------CCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCc
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGW------SGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP 278 (583)
...-++..+|++.++.++++++........ ..+...++.+++++.++...+..+.|+|.|.|.+.-.++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 999999999999999998888864322211 12222244567789999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---------CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhh
Q 007966 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (583)
Q Consensus 279 ~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~---------~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 349 (583)
+|++|||+.-....+.++|++..+.++..+|+++-+ ..+|+..++++.|.+.+..++++.++++.+++.++
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988721 23699999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 350 SILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISV 423 (583)
Q Consensus 350 ~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~ 423 (583)
.+++.||++++||+||..||.|+|+||+ |+|.+|++++.+++++-.+-. .++||.++.++..++.+..++++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999998887543332 278999999999999999999999
Q ss_pred HHHhccC
Q 007966 424 LILRYVP 430 (583)
Q Consensus 424 i~lr~~~ 430 (583)
+++|+..
T Consensus 423 irFR~A~ 429 (541)
T COG0833 423 IRFRRAM 429 (541)
T ss_pred HHHHHHH
Confidence 9999843
No 24
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=366.45 Aligned_cols=371 Identities=26% Similarity=0.430 Sum_probs=334.4
Q ss_pred cccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHH
Q 007966 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (583)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~ 122 (583)
++++++|.|+.++.-++++++.||+|.|...+.. .+.+||+.++++++++++.+...=..+|+...-|+.|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~-I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSA-IAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchh-hhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 3446899999999999999999999999988874 578999999999999999999999999999999999999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 123 ~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
.+|++.||+++|.||+.|+....+...+++.+++.++.+ .|.| +.+++++.+...+|..++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~---vP~W--------------v~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD---VPQW--------------VFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888742 2443 45888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc---c-----CCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhh
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK---T-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E 274 (583)
.+..+..+..+|++.++.+++.+.+..+. + +.++..+..+++|+++.+++.++...+|+|.|.|.+...+.|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999998888764322 1 223444456789999999999999999999999999999999
Q ss_pred hhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007966 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (583)
Q Consensus 275 ~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 353 (583)
.|||+|.+|||+-.......++|+...+++....|+++++.+ +|+...|+..|.++...++++.++.+.++++++.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 999999999999999999999999999999999999998554 6999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 354 ~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
.+|+++++|+||..||.++|+||+ ++|.++++++++...+-.++. .+..+.+..+.+.+..|.++.++.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999988776544442 2667899999999999999999999999
Q ss_pred ccCCC
Q 007966 428 YVPPD 432 (583)
Q Consensus 428 ~~~~~ 432 (583)
|++++
T Consensus 388 k~~~~ 392 (462)
T COG1113 388 KAKPA 392 (462)
T ss_pred hcchh
Confidence 85443
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=8.1e-44 Score=384.95 Aligned_cols=368 Identities=20% Similarity=0.327 Sum_probs=298.9
Q ss_pred cccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCC-CchhhhHHHHhCc
Q 007966 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSA-GSAYHYSYICVGE 126 (583)
Q Consensus 49 r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~-GG~y~~~~~~~g~ 126 (583)
|++|.++++++.+++++|+|+|..++.++ ..+|+. .+++|+++++..++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 68999999999999999999999999866 456776 78899999999999999999999999995 6999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i 206 (583)
..||+++|.||+++.............+.+..+.... .........++.++++++..+|.+|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999877666555555555544332110 00111112346666778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCCC-CC-CCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCch
Q 007966 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPT-GY-FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (583)
Q Consensus 207 ~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~ 282 (583)
|++.+.++++.++++++.++.....+.... +.+.+ +. ....+.++..++...+|+|.|+|.++.+++|.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999988888776654311111111 11100 00 1122445667788899999999999999999998 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~-~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
||++..+...+.++|++.+++.....|+++++. ++| ..+++++.++++...++.+..+++.+++.++++.+.+|++++
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877643 345 667788888888889999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 361 ~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~-----~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
++|||.+|++|+|+||+ ++|.++++++.+++.++.+. ..++++.++.+...++.|.+.+++.+++|+|+
T Consensus 308 ~ardg~lP~~f~k~~~~-~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 308 MAKDKLMPKYFGKENAN-GAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHhCCCccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999977 99999999998888665443 23778999999999999999999999998775
No 26
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=5.3e-44 Score=387.19 Aligned_cols=435 Identities=19% Similarity=0.268 Sum_probs=314.8
Q ss_pred cccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 49 r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~-~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
||++++++++|+++.+.+..... +.+..|+.++++|++++++. ++.+++++|+++++|++||.|.|++|.+|++
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~~-----~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGLP-----AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcch-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 57999999999998887755442 22457889999999988865 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007966 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (583)
Q Consensus 128 ~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~ 207 (583)
+|++++|.||+++..............+..... ..... ...+...+....+.++++++++.+|.+|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGP-EATVD-----ESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccccC-----cccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999987655444333333322211 00000 011122222224566667788899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhccccCCCCCCCC-CCCCCc--hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchh
Q 007966 208 AIVTTA-NVLAMLFVIIAGSYLGFKTGWSGYELP-TGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (583)
Q Consensus 208 ~~~~~~-~ii~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p 283 (583)
++.+.+ +++.++++++.++.....++....... .+..|+ ++.+...+ ...+|+|.|+|.++.++||+|||+|++|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchh
Confidence 887554 345555555555432111111111000 112222 22223322 3457899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChH----HHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007966 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPI----SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (583)
Q Consensus 284 ~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~----~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 359 (583)
||+..+..+++++|++.++++....|++++..+++. .+.++..|.++...++.+...++.+++.++++.+.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887544443 3344555667788888888889999999999999999999
Q ss_pred HHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh----hC----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007966 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF----MD----VSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (583)
Q Consensus 360 ~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~----~~----~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~ 431 (583)
+++|||.+|++|+|+||+ ++|.++++++++++.++.++ ++ ++.+.++.+....+.|++.+++.+++|+|+|
T Consensus 309 a~ardg~lP~~~~kv~k~-~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTNKN-GMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccCCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999976 99999999999876543332 12 5678888888899999999999999998766
Q ss_pred C-CCCccccccccccccccccccccccccCCccccccCccccccchhccccCCcchhhhHHHHHHhhhcccccchhhHHH
Q 007966 432 D-EVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIM 510 (583)
Q Consensus 432 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (583)
+ +||+|.|.+ +...+.++.+++.
T Consensus 388 ~~~rpf~~p~g--------------------------------------------------------~~g~~~~~~~~~~ 411 (474)
T TIGR03813 388 DRPRPYRIPGG--------------------------------------------------------LAGMWFIGGLGFV 411 (474)
T ss_pred CCCCCeEecCC--------------------------------------------------------ccchhHHHHHHHH
Confidence 5 333333221 1112345566777
Q ss_pred HHHhhHhHhhhcccccCCchHHHHHHHHHHHHHHHHHHHHhh
Q 007966 511 FTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLT 552 (583)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 552 (583)
.+.+.+++.++|.......+-.+|...++++.+++..+-++.
T Consensus 412 ~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~ 453 (474)
T TIGR03813 412 GSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLI 453 (474)
T ss_pred HHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766677777889888888777765444444
No 27
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.6e-43 Score=381.73 Aligned_cols=385 Identities=22% Similarity=0.318 Sum_probs=290.6
Q ss_pred CcccccccccccChHHHHHHHHhhh-hhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhh
Q 007966 40 PERSHQKLAKNLTIPHLVAIGVGST-IGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYH 118 (583)
Q Consensus 40 ~~~~~~~l~r~l~~~~~~~l~~~~v-iG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~ 118 (583)
+++++||++|+++.++.+.++++.+ ++.|++...+.. .+.+|+..+++|+++++..++.+++++|+++++|++||.|+
T Consensus 4 ~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~-~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~ 82 (475)
T TIGR03428 4 RFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFG-YGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQ 82 (475)
T ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHH
Confidence 4678889999999999999999975 888999988874 46789999999999999999999999999999999999999
Q ss_pred hHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccC--CCCccchhHHHHHHHHHHHHHH
Q 007966 119 YSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQI--PGLGIIVDPCAAILVLIVTGLL 196 (583)
Q Consensus 119 ~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~i~ 196 (583)
|+++.+||.+||+++|.+++++....+.........+...+...... ...... +...+...+++++++++++++|
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII---GEDPTLTSPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---ccCccccCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766655554444433221100000 000000 1111223456777788899999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC-CCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 197 CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 197 ~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
.+|+|...+++++...++++.++++++.++.....+....++.. .+..+.....++.+....+|+|.|+|.+++++||+
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~ 239 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET 239 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 99999999999999999987777666555433211110011111 11112223446667778899999999999999999
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhc
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSIL 352 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~--l~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~ 352 (583)
|||+|++||++..+..++.++|.+..++.....+..+ ...+++...++.+. +.++. .++....+++.+++.++.+.
T Consensus 240 knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 240 KNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887777766655321 11223333444444 44444 45556677889999999999
Q ss_pred chhHHHHHHHhcCCCcc--cccccccccCCchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 353 PQPRILMAMARDGLLPP--FFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVLI 425 (583)
Q Consensus 353 ~~sR~l~~~a~dg~lP~--~~~k~n~~~g~P~~aill~~~l~~il~~~~-----~~~~l~~l~~~~~~~~~~~~~~a~i~ 425 (583)
+.+|++++++|||.+|+ +|+|+|+|+++|++++++.++++.++.++. .++.+.++.+....+.|.+..++.+.
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~ 398 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLL 398 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999994 899999888999999999999988766653 26788999999999999999888887
Q ss_pred Hhcc
Q 007966 426 LRYV 429 (583)
Q Consensus 426 lr~~ 429 (583)
.|+|
T Consensus 399 ~~~~ 402 (475)
T TIGR03428 399 RRLR 402 (475)
T ss_pred HHHh
Confidence 7755
No 28
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.3e-43 Score=385.26 Aligned_cols=427 Identities=20% Similarity=0.225 Sum_probs=307.1
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhhhCc-CCCchhhhHHHHhC
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP-SAGSAYHYSYICVG 125 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~-~~~~~l~~~el~s~~p-~~GG~y~~~~~~~g 125 (583)
+||++.+++++|+++.+.+. ...+. .+..|...+..|++++++ .+|.+++++|+++++| ++||.|.|++|.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~~--~~~~~---~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLAV--YEYPT---FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHHH--HhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 57799999999999888653 43332 355788888889988885 6789999999999998 89999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
+++||+++|.+|+.+..................+. .+. .+...+...+..++++++++++|.+|.|...+
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~------~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPA------LNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cch------hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876554443333333333331 011 11112223345566788899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccccCCCCCC-CCCCCCCch-hhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCch
Q 007966 206 AQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGYE-LPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (583)
Q Consensus 206 i~~~~~~~~ii~-~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~ 282 (583)
++++.....++. ++++++++......++..... +.+++.|.. ..+.+..+...+|+|.|+|.++.+++|+|||+||+
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998876654444 333333333221111111110 112233321 12344555567899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHH----HHcc--hhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAF----ASHG--MHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~----~~~g--~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
|||++.+.+++.++|.+.++++....|+++++.+++..+.+ ...+ .+++..++.+..+++.++++++++++++|
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888988876555444433 3332 35777888999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM---------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~---------~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
++++++|||.+|++|+|+||+ ++|.++++++++++.++.++. .++.+.++.+...++.|++.+++++++|
T Consensus 308 ~l~~~ardg~lP~~~~k~nk~-~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMNKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977 999999999999987654331 1345667788899999999999999999
Q ss_pred ccCCCC-CCccccccccccccccccccccccccCCccccccCccccccchhccccCCcchhhhHHHHHHhhhcccccchh
Q 007966 428 YVPPDE-VPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAG 506 (583)
Q Consensus 428 ~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (583)
+|+|+. ||+|.|.+ +...+.+..
T Consensus 387 ~k~p~~~rpf~~pg~--------------------------------------------------------~~~~~i~~~ 410 (507)
T TIGR00910 387 LKHPDLKRTFNIPGG--------------------------------------------------------IGGKLIIAG 410 (507)
T ss_pred HhcCCCCCCeEecCC--------------------------------------------------------ccchhhHHH
Confidence 987763 33333221 111234455
Q ss_pred hHHHHHHhhHhHhhhcccccCCchHHHHHHHHHHHHHHHH
Q 007966 507 WTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLC 546 (583)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (583)
++++.++++++..++|.......+...|....+++.++++
T Consensus 411 ~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~ 450 (507)
T TIGR00910 411 IGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTA 450 (507)
T ss_pred HHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHH
Confidence 6667777777777777654445566777777766544433
No 29
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=4.3e-43 Score=373.51 Aligned_cols=356 Identities=18% Similarity=0.237 Sum_probs=284.2
Q ss_pred cChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 51 l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
+|+|+...+.+++++|+|+|..++..+ +.+|+.++++|++++++.++.+++++|+++++|++||.|.|+++.+||++|+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 588999999999999999999999865 6678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~ 210 (583)
.++|.+|..+.............+....+. ...+....+.++++++++++|.+|+|..++++.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG---------------WSSWQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---------------CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987665544443333334333331 11112224567778888999999999999999987
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHH
Q 007966 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (583)
Q Consensus 211 ~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~ 290 (583)
..+.+..+..+. ... ..+..++. ..+..+.++.++..++...+|+|.|+|.+++++||+|||+||+||++..+.
T Consensus 145 ~~~~~~i~~~~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~ 218 (410)
T PRK11021 145 ALLIVALVVAIW----WAG-DIKPADIP-FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGL 218 (410)
T ss_pred HHHHHHHHHHHH----HHc-CCchhcCC-CCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHH
Confidence 755443322211 111 11111111 111223467788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007966 291 SICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (583)
Q Consensus 291 ~i~~vlyil~~~~~~~~~~~~~l-~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 369 (583)
.+++++|++.+++.....+.++. ..+.+..+++++..+++...++.+..+++.+++.++++.+.+|++++++|||.+|+
T Consensus 219 ~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 219 LLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 99999999999888766655443 23457777777765666667788888999999999999999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 370 ~~~k~n~~~g~P~~aill~~~l~~il~~~-----~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
+|+|+||+ ++|.++++++.+++.+..++ .+++.+.++.+...++.|.+..++.+++++|
T Consensus 299 ~~~k~~~~-~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 299 YLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999987 99999999998887765433 3678899999999999999999999999764
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2.2e-43 Score=383.54 Aligned_cols=380 Identities=18% Similarity=0.235 Sum_probs=286.5
Q ss_pred CcccccccccccChHHHHHHHHhhhh-hhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchh
Q 007966 40 PERSHQKLAKNLTIPHLVAIGVGSTI-GAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAY 117 (583)
Q Consensus 40 ~~~~~~~l~r~l~~~~~~~l~~~~vi-G~gif~~~~~i~~~~~G~-~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y 117 (583)
+.+++|+++|+++.++.+.++++.+. ..|++...+. ....+|+ ..+++|++++++.++.+++++|+++++|++||.|
T Consensus 3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y 81 (482)
T TIGR00907 3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNY-GLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQY 81 (482)
T ss_pred ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 35778889999999999999999552 2566665543 3467888 4899999999999999999999999999999999
Q ss_pred hhHHHHhCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHH
Q 007966 118 HYSYICVGE----GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVT 193 (583)
Q Consensus 118 ~~~~~~~g~----~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 193 (583)
+|++|.+|+ ..||+++|.+++.+....+......+.++...+......+. +....+....+.++++++++
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~ 155 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGRE------YIPTRWHIFGIMIGIHLIHA 155 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------ccccCchhhhhHHHHHHHHH
Confidence 999999874 57899999999999988887777766666544321110000 11112333345677788899
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-C-----CCCCCCCC-CCCCchhhhHHHHHHHHHHHhhhhh
Q 007966 194 GLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-G-----WSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFD 266 (583)
Q Consensus 194 ~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~fa~~G~e 266 (583)
++|.+|+|..++++++...++++.++++++..+.....+ + ++++.+.. ++.+.++ +++.++....|+|.|+|
T Consensus 156 ~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e 234 (482)
T TIGR00907 156 LINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYD 234 (482)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcc
Confidence 999999999999999998888777665544433321111 0 11111111 2233333 46667777889999999
Q ss_pred HHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhccc-CCCC-CC--CChHHHHHHHc-chhHHHHHHHHHHHH
Q 007966 267 AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP-YYEM-DP--DTPISSAFASH-GMHWASYVITIGAVT 341 (583)
Q Consensus 267 ~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~-~~~l-~~--~~~~~~~~~~~-g~~~~~~i~~~~~~~ 341 (583)
.+++++||+|||+|++|||+..+..+..+++++..+......+ .+++ +. .+|+.+++.+. |.++...++.+..++
T Consensus 235 ~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~ 314 (482)
T TIGR00907 235 GTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILV 314 (482)
T ss_pred hhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999999999999998877665555544443333 2222 22 24787887765 555777778888899
Q ss_pred HHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHH
Q 007966 342 ALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLL 414 (583)
Q Consensus 342 ~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~-----~~~~l~~l~~~~~~~ 414 (583)
+.+++.++.+.+.||++++++|||.+| ++|+|+|||+++|+++++++++++.++.++. .++.+.++.+....+
T Consensus 315 ~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i 394 (482)
T TIGR00907 315 TSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDV 394 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999988765553 477899999999999
Q ss_pred HHHHHHHHHHHHh
Q 007966 415 AFTMVAISVLILR 427 (583)
Q Consensus 415 ~~~~~~~a~i~lr 427 (583)
.|.+...+.++.|
T Consensus 395 ~y~~~~~~~l~~~ 407 (482)
T TIGR00907 395 SYVIPIICKLAKG 407 (482)
T ss_pred HHHHHHHHHHHhc
Confidence 9999887665444
No 31
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=7.1e-42 Score=372.25 Aligned_cols=374 Identities=17% Similarity=0.191 Sum_probs=270.8
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhhhCcC-CCchhhhHHHHh
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~-~~~~~l~~~el~s~~p~-~GG~y~~~~~~~ 124 (583)
++|++|++++.+|+++.++|.+.. +. ....+|+..+++|++++++ .++.+++++|+++++|+ +||.|+|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~~--~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--PR--AFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--HH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999998743 22 2356788877778777765 67899999999999997 899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAML-FGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
||++|++++|.+|.+++................. ++.+. .+.+. ..... .......++++.+++++++|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDT-TQTWH-FLGLN-STQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhhh-hhccc-chHHHHHHHHHHHHHHHHHHccchHHH
Confidence 9999999999999988877655443322222222 22211 11000 00000 011122345566668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh-ccccCC-CCCC--CC-CCCCCc--hhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 204 TIAQAIVTTANVLAMLFVIIAG-SYL-GFKTGW-SGYE--LP-TGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~~~~ii~~-~~~-~~~~~~-~~~~--~~-~~~~~~--~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
++++++.+.+++...+++++.. ... ...... .... +. +...+. +..+++.++....|+|.|+|.+++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 9999998877765533222221 111 111110 0110 00 000111 11357777788899999999999999999
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-------ChHHHHHHHcc-----------------hhHH
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFASHG-----------------MHWA 331 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~-------~~~~~~~~~~g-----------------~~~~ 331 (583)
|||+|++||++..+...++++|++..+.+....|.++..+. .+.. ..+..+ +.++
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 99999999999999999999999999888887777665321 1111 122221 3455
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhh--C-------HH
Q 007966 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D-------VS 402 (583)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~--~-------~~ 402 (583)
..++.+..+++.+++.+.+.++++|.++..+|||.+||+|+|+||+ ++|+++++++++++.++.... . ++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~-g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~ 395 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKN-GMPANAMWLQCIIVSVFILLVSFGGDAASAFFN 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 6677888999999999999999999999999999999999999976 999999999998877654332 1 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 403 ALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 403 ~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
++.++.+...++.|++++++++++||+
T Consensus 396 ~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 396 ILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999764
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=3.9e-41 Score=383.88 Aligned_cols=381 Identities=17% Similarity=0.250 Sum_probs=304.7
Q ss_pred cccccChHHHHHHH-HhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhh-CcCCCchhhhHHHH
Q 007966 47 LAKNLTIPHLVAIG-VGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASR-CPSAGSAYHYSYIC 123 (583)
Q Consensus 47 l~r~l~~~~~~~l~-~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~-~p~~GG~y~~~~~~ 123 (583)
..+++|+++.+++- +.+++|+|+|..++.+..+ .|.. +++.|+++++++++.+++++|+++. +|++||.|.|++|.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45789999999997 9999999999999998754 5555 8889999999999999999999998 99999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
+|+.+|+..||.+++++....+.++.++++++...+...... .. .......++++++++++++++|+.|+|+.
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~~-----~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--IM-----VDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cc-----cCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999998877421100 00 00011234678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCCCCC---CCCCC---CchhhhHHHHHHHHHHHhhhhhHHHhhhhh
Q 007966 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKT---GWSGYEL---PTGYF---PFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~~~~ii~~~~~~~~~---~~~~~~~---~~~~~---~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E 274 (583)
.++|.++..++++.++.+++.++...... ++..+.. ..++. +.+..+++..++..+++++|+|+++++++|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998888777766554321110 0000000 01111 122233677777788899999999999999
Q ss_pred hhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChH------------------H----HHHHHc-chhH
Q 007966 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPI------------------S----SAFASH-GMHW 330 (583)
Q Consensus 275 ~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~------------------~----~~~~~~-g~~~ 330 (583)
+|||+|++|||++.++++++++|++.++++..+.+++.... ++.. . ..+... ....
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999998888877554321 0000 0 111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMV 408 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~ 408 (583)
...++.++.+++.+++.++++.+.+|+++++||||.+| ++|+|.|+++++|++|++++++++.+++++++++.+.++.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45789999999999999999999999999999999999 8999999888999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CCCC
Q 007966 409 SVGTLLAFTMVAISVLILRYVPP-DEVP 435 (583)
Q Consensus 409 ~~~~~~~~~~~~~a~i~lr~~~~-~~~~ 435 (583)
+...++.|++++++++++|++++ +.||
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP 493 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRP 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 99999999999999999986653 3344
No 33
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-42 Score=352.59 Aligned_cols=456 Identities=19% Similarity=0.269 Sum_probs=346.1
Q ss_pred ccccCcccCCCcccccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 007966 30 RKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELAS 108 (583)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~-~~i~~~ii~~l~~~~~~l~~~el~s 108 (583)
+++.|++...+.++||+++|++++|+.+.++|+.+=-.-.+...-......+|+ ..+++|++++++.++.+++++|++|
T Consensus 29 ~~~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~S 108 (550)
T KOG1289|consen 29 EDDSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCS 108 (550)
T ss_pred cccCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 344455555667899999999999999999998642111122211112232444 5999999999999999999999999
Q ss_pred hCcCCCchhhhHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHH
Q 007966 109 RCPSAGSAYHYSYICVGEG----VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPC 184 (583)
Q Consensus 109 ~~p~~GG~y~~~~~~~g~~----~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (583)
.+|.+||.|.|....-+|+ .+|++||...+++....++...+.++.+.....-. +..+....+.+.++
T Consensus 109 a~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~--------np~y~~~~~~~~~v 180 (550)
T KOG1289|consen 109 AMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT--------NPNYEPTNYHQFGV 180 (550)
T ss_pred hCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc--------CCCCcccceEeehH
Confidence 9999999999999887655 77788888899999988888888887776554311 12223344666678
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----C---CCCCCCCCCCCCchhhhHHHHHH
Q 007966 185 AAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-----G---WSGYELPTGYFPFGVNGMLAGSA 256 (583)
Q Consensus 185 ~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
..++..+..++|....|+.++++.+..++.++.+++..+...+...++ + +..+++..++.+.++. +..++.
T Consensus 181 ~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f~ 259 (550)
T KOG1289|consen 181 FEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGFF 259 (550)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhhc
Confidence 889999999999999999999999999999888777766655432221 1 3344555556666554 777788
Q ss_pred HHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCC--CChHHHHHHHcchhHH
Q 007966 257 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE---MDP--DTPISSAFASHGMHWA 331 (583)
Q Consensus 257 ~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~---l~~--~~~~~~~~~~~g~~~~ 331 (583)
...|.+.|+|+.++++||+|||+|+.||||+.++.+..++-....+.+....++|. +++ ..|+.+.+.+.-++-.
T Consensus 260 ~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~ 339 (550)
T KOG1289|consen 260 NPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKG 339 (550)
T ss_pred cceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999998888888888888543 122 3688888877644433
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhh-----CHHHH
Q 007966 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSAL 404 (583)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~-----~~~~l 404 (583)
...+....++..+.+..+++.+.||+.++.+|||.+| +++.|+|+++++|.+|+++..+++.++.++. .++.+
T Consensus 340 ~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Al 419 (550)
T KOG1289|consen 340 AVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNAL 419 (550)
T ss_pred eEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3677778888888899999999999999999999999 8999999999999999999999999877663 26677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccccccccccccccccccccCCccccccCccccccchhccccCCc
Q 007966 405 AGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAV 484 (583)
Q Consensus 405 ~~l~~~~~~~~~~~~~~a~i~lr~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (583)
.+...++..++|..-....+.. +|++-+|.|..++
T Consensus 420 fs~a~i~l~~Ay~iP~~~rlf~--~r~~f~~gp~~lG------------------------------------------- 454 (550)
T KOG1289|consen 420 FSAAAIALFIAYAIPIFCRLFF--GRDDFRPGPFNLG------------------------------------------- 454 (550)
T ss_pred HHHHHHHHHHHHHHhHHhheee--cccccCCCCcccc-------------------------------------------
Confidence 7777777788887765443333 3334445333333
Q ss_pred chhhhHHHHHHhhhcccccchhhHHHHHHhhHhHhhhcccccCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 007966 485 SYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTS 553 (583)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (583)
|.....+.|+++.+.+.++++.+|.....++.-++|.--+.|+.+++..+-++.+
T Consensus 455 --------------k~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~ 509 (550)
T KOG1289|consen 455 --------------KFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS 509 (550)
T ss_pred --------------ccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeee
Confidence 2233445678888888888888877666677778888888887777666655555
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.8e-41 Score=361.91 Aligned_cols=366 Identities=33% Similarity=0.534 Sum_probs=305.3
Q ss_pred cChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhhhCcCCCchhhhHHHHhCchHH
Q 007966 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (583)
Q Consensus 51 l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~-~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g 129 (583)
+|+++.+.++++.++|+|++..+ ....+|+..+++|++++++. ++.+++++|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 68999999999999999998877 34668888999999988887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007966 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (583)
Q Consensus 130 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~ 209 (583)
++++|.+++.+....+.......+++...++. ..+.+.+....+++++++++..+|.+|.|..++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP-----------DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----------GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccc-----------ccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999998888877777776655431 0111223344678888999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhccccCCCCC-CCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHH
Q 007966 210 VTTANV-LAMLFVIIAGSYLGFKTGWSGY-ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (583)
Q Consensus 210 ~~~~~i-i~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~ 287 (583)
.+.+++ +.++++++.++.....++.+.. ...+...|.++.+++.++...+|+|.|+|.+++++||+|| ||+||++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 5777777777664333221110 0112234445556788899999999999999999999877 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCC----hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHh
Q 007966 288 TALSICCALYMLVSIVIVGLVPYYEMDPDT----PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (583)
Q Consensus 288 ~~~~i~~vlyil~~~~~~~~~~~~~l~~~~----~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 363 (583)
.+.++++++|++.++++....|+++.+..+ +....++..++++...++.+...++.+++.++.+.+.+|++++++|
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 999999999999999999999998764432 4666777888789999999999999999999999999999999999
Q ss_pred cCCCcccccccccccCCchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007966 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE 433 (583)
Q Consensus 364 dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~------~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~~ 433 (583)
||.+|++|+|+||+ ++|++++++.++++.++.++. +++.+.++.+....+.|.+..++++++|+|+|++
T Consensus 305 d~~lP~~~~~~~k~-~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 305 DGVLPKWFAKVNKF-GTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp TTSSSGGGGTTSSS-SSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred ccchhhhhhhcccc-CCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999999999955 999999999999997654332 4788999999999999999999999999887764
No 35
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=348.72 Aligned_cols=376 Identities=38% Similarity=0.571 Sum_probs=314.7
Q ss_pred cccccccChHH-HHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 45 QKLAKNLTIPH-LVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 45 ~~l~r~l~~~~-~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
++++|+++.++ ...+..+.++|.|++..++..+... +...+.|++++++....+++++|+++.+|++||.|.|+++.
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 85 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRA 85 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhh
Confidence 45789999999 8888999999999999888765332 44455599999988888999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
+|++.|+.++|.+|+.+....+..+.....++...+...... ....+....++++++++.+++|.+|+|..
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 86 LGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL---------SIGPLLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh---------cCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999888888777666432100 00003444678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchh
Q 007966 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p 283 (583)
.+++.+.+.++++.++.+++.++.....+..+......+ .......+..++...+|+|.|+|.+++++||+|||+|++|
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 999999999999999988888776543332111111111 1122346888888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMDPD---TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 284 ~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~---~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
|+++.+.+.++++|++.+++.....+.+++... .|..++.....+.+...++.+..+.+.+++.+++..+.+|++++
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654432 68888888887788999999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-M----DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 361 ~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~-~----~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
++|||.+|++|+|+|+++++|.++++++.+++..+... . .++.+.++.+...++.|.+...+.+.+|+|+++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 392 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD 392 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999889999999999999933333 2 257899999999999999999999999988654
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.5e-39 Score=351.36 Aligned_cols=365 Identities=29% Similarity=0.456 Sum_probs=295.2
Q ss_pred HHHHHhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHH
Q 007966 57 VAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (583)
Q Consensus 57 ~~l~~~~viG~gif~~~~~i~~~~~G~-~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~ 135 (583)
.++++++++|+|.|...+... ..+|+ +.++++++++++.++.+.+++|+++.+|++||.|.|++|.+||..|+.++|.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 356788999999999998865 45666 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007966 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (583)
Q Consensus 136 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~i 215 (583)
||+.++...+.........+...-. ....+ ....+.. .++.++.++++.+|..|+|...+++.+...+++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~-~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGY-FPGLP--------STWVWGI-LIAIIFILLITLLNLFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccc-ccccc--------ccccccc-hhhhhhhhhhhhhhhhhhhccchHHHHHHHHhh
Confidence 9999999888877666655543310 01011 0000100 346777888899999999999999999999999
Q ss_pred HHHHHHHHHH-hhhccccCCCCC---CCCC---CCCCc--------hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCC
Q 007966 216 LAMLFVIIAG-SYLGFKTGWSGY---ELPT---GYFPF--------GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR 280 (583)
Q Consensus 216 i~~~~~ii~~-~~~~~~~~~~~~---~~~~---~~~~~--------~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k 280 (583)
+.++.+++.+ .......+..+. ..+. +..++ .+.+++.++...+++|.|+|.++.++||+|||+|
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 9988888777 322111111111 1110 11222 3678999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007966 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD------TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (583)
Q Consensus 281 ~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~------~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~ 354 (583)
++|||+..+.+.++++|++..++....+|+++.... +|+..+.+..+++++..++.+..+.+.+++.++.+++.
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhccc
Confidence 999999999999999999999999999998885322 37888888999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007966 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAISVLILRY 428 (583)
Q Consensus 355 sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~------~~~l~~l~~~~~~~~~~~~~~a~i~lr~ 428 (583)
||++++|+|||.+|+++.++++|+|+|++|++++.+++++..+... ++++.++.+...++.|..++++++++|+
T Consensus 312 sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~ 391 (478)
T PF00324_consen 312 SRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRK 391 (478)
T ss_pred ceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhh
Confidence 9999999999999955555555559999999999999887665432 4577888999999999999999998887
Q ss_pred cCCC
Q 007966 429 VPPD 432 (583)
Q Consensus 429 ~~~~ 432 (583)
+.+.
T Consensus 392 ~~~~ 395 (478)
T PF00324_consen 392 KFKY 395 (478)
T ss_pred hhcc
Confidence 6443
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=1.9e-25 Score=235.69 Aligned_cols=356 Identities=17% Similarity=0.101 Sum_probs=267.2
Q ss_pred HHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHH
Q 007966 58 AIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALI 137 (583)
Q Consensus 58 ~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~ 137 (583)
++.+++++|.|++..|...+ ..++...+...++++++....+++++|+++++|++||.|.|.++.+||+.|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678899999999998855 44555567777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007966 138 LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLA 217 (583)
Q Consensus 138 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~ 217 (583)
+.+....+++....+..++..+..+... ........+++.+++..++.+|.|..+|++.+....+++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF------------PWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC------------CccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 9888888888777777776665321100 0112234666777888999999999999999999999988
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhh-HHHhhhhhhhCcCCchhhHHHHHHHHHHHH
Q 007966 218 MLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFD-AVASTAEEVKNPQRDLPLGIGTALSICCAL 296 (583)
Q Consensus 218 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e-~~~~~~~E~knP~k~~p~a~~~~~~i~~vl 296 (583)
++++++.+......++. .+. ...+.++.++..++...+++| |+| .+....+|+||++|++||++..+..++.++
T Consensus 151 l~~~ii~~~~~~~~~~~---~~~-~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~l 225 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLL---LDV-ALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVL 225 (381)
T ss_pred HHHHHHHHHhhccHHHH---hcC-ccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 87777666532111111 110 011234556777888888888 564 688889999877999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCC-------CCChHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc
Q 007966 297 YMLVSIVIVGLVPYYEMD-------PDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (583)
Q Consensus 297 yil~~~~~~~~~~~~~l~-------~~~~~~~~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 368 (583)
|++.+++..+.+|++++. +.++..++.+. .++++...++.++..++..++.+++..+.++.+..
T Consensus 226 Y~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~-------- 297 (381)
T TIGR00837 226 YILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD-------- 297 (381)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 999999999999988863 11455666665 46677888999999999999998877776654433
Q ss_pred ccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCCCccccccc
Q 007966 369 PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLIL---RYVPPDEVPVPSTLQS 442 (583)
Q Consensus 369 ~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~l---r~~~~~~~~~~~~~~~ 442 (583)
.+.+.+++ .-|..+.+++.+...++....+-..+.++...+....++....+.+.. |||+++ .++|.+..+
T Consensus 298 -~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~-~~~~~~~~~ 371 (381)
T TIGR00837 298 -LFKFDDSK-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN-AGYRVWGGN 371 (381)
T ss_pred -HhCCCccc-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCCh
Confidence 33333333 236778888888888887777777888888888888878887777777 443333 355555543
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.89 E-value=6.4e-22 Score=206.27 Aligned_cols=381 Identities=18% Similarity=0.199 Sum_probs=278.6
Q ss_pred ccc-ccChHHHHHHHH-hhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCc-CCCchhhhHHH
Q 007966 47 LAK-NLTIPHLVAIGV-GSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYI 122 (583)
Q Consensus 47 l~r-~l~~~~~~~l~~-~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p-~~GG~y~~~~~ 122 (583)
..| |+|.++.++.=. -++...=.|...+.+. .+.|.- .+.-.+++-.+.+...+++.-+++.=- +.||.|.-++|
T Consensus 62 s~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIv-G~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR 140 (945)
T KOG1288|consen 62 SNRAKLGTFEGVFVPTALSMFSILLFLRFGFIV-GQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR 140 (945)
T ss_pred CCcccccceeeEechhHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc
Confidence 345 888887765522 2334444666666654 344554 555555565666667777777776554 47999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 123 ~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
.+|+-.|--.|..+.++.++.++..+.++.+.+-..|+....-+. ....+|...|+..+-+.++..++..+++.|-..
T Consensus 141 sLGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~s--g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsal 218 (945)
T KOG1288|consen 141 SLGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGAS--GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSAL 218 (945)
T ss_pred ccCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCc--ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999988874432211 122456666777677888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCC-----CCC---------------CCC--------CCchhhhHHH
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGW-SGY-----ELP---------------TGY--------FPFGVNGMLA 253 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~-~~~-----~~~---------------~~~--------~~~~~~~~~~ 253 (583)
.+|..++......+.+.-+.+..+..+..+.. +.. .++ ++. ...+-.++-.
T Consensus 219 fAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~ 298 (945)
T KOG1288|consen 219 FAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFAS 298 (945)
T ss_pred HHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhh
Confidence 88877665444333333322222221111110 000 000 000 0112234566
Q ss_pred HHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHH
Q 007966 254 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASY 333 (583)
Q Consensus 254 ~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 333 (583)
.+...+-+.+|.-+.+++++|.|+|.|.+||+.+.+...+.++|++..+.+....|+..+.++-.+ ++.. +.-..
T Consensus 299 ~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v---~~~i--sl~p~ 373 (945)
T KOG1288|consen 299 TFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV---MMHI--SLHPP 373 (945)
T ss_pred hheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh---eeec--cccch
Confidence 777778888999999999999999999999999999999999999999999999988777555322 1111 12234
Q ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 007966 334 VITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVG 411 (583)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~ 411 (583)
++.++++...+.+..+.+.+++|++.++|||+.+| ..++|...+.+.|+.|+.+++.++-+.++.+++|.+..++++.
T Consensus 374 fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~ 453 (945)
T KOG1288|consen 374 FILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMT 453 (945)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56677777777788888999999999999999999 6778887777999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC-CCCCC
Q 007966 412 TLLAFTMVAISVLILRYVP-PDEVP 435 (583)
Q Consensus 412 ~~~~~~~~~~a~i~lr~~~-~~~~~ 435 (583)
+++.|..+.++++.++... |+.||
T Consensus 454 FLlty~~vNLacl~LeissAPNFRP 478 (945)
T KOG1288|consen 454 FLLTYGAVNLACLLLEISSAPNFRP 478 (945)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCc
Confidence 9999999999999998864 45555
No 39
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.89 E-value=5.6e-20 Score=192.54 Aligned_cols=288 Identities=14% Similarity=0.151 Sum_probs=225.9
Q ss_pred cccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchH
Q 007966 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (583)
Q Consensus 49 r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~ 128 (583)
+|+|.++...+.+++++|+|++..|+..+ +.+|.++|+++++++++.++.++++.|+++++|+. |.+.|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHH
Confidence 36899999999999999999999998765 56788899999999999999999999999999986 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007966 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (583)
Q Consensus 129 g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~ 208 (583)
|++.+|.|+.......+......++.+...+. .+.| ...+.+.+++++...+..|+|...|++.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~tp--------------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYLL--PRTP--------------IIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC--------------HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999999988777777777666766654442 1111 1235677777888899999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHH-HHHHHhhhhhHHHhhhhhhhCcCCchhhHH
Q 007966 209 IVTTANVLAM-LFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSA-TVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (583)
Q Consensus 209 ~~~~~~ii~~-~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fa~~G~e~~~~~~~E~knP~k~~p~a~ 286 (583)
+...++++.. +++..... ...++. +-.+..+.++.+.+.+.. ...++|.|+|....+.+|+|||+ +.||++
T Consensus 143 i~~~~~i~~~~~il~~~~~---~~~~~~---~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~ 215 (359)
T TIGR00912 143 ILLIIFLILFILVLILLAP---KLGNIK---NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSI 215 (359)
T ss_pred HHHHHHHHHHHHHHHHHhc---ccccHH---HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHH
Confidence 9988877663 33322221 111111 112334456666777665 78899999999999999999974 699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchh-HHH---HHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966 287 GTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMH-WAS---YVITIGAVTALCSTLMGSILPQPRILMAM 361 (583)
Q Consensus 287 ~~~~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~-~~~---~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 361 (583)
..+.++++++|++..++..+.+++++... ..|..+..+....+ ... .++......+.+......+++.++.+.+.
T Consensus 216 ~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 216 IKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888754 47888888887433 333 45666777777888888888888887654
No 40
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.9e-21 Score=199.13 Aligned_cols=382 Identities=16% Similarity=0.243 Sum_probs=270.6
Q ss_pred ccChHHHHHH-HHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCc-CCCchhhhHHHHhCc
Q 007966 50 NLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYICVGE 126 (583)
Q Consensus 50 ~l~~~~~~~l-~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p-~~GG~y~~~~~~~g~ 126 (583)
++|..-.+.+ ++=++.|.-.|...-++. ..+|.. .+...++.+...++.+.+..-.++.=- .+||.|.-++|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvV-G~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVV-GMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 4554433333 555677777787776654 445554 666666777788888888888888654 379999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
-.|-.+|.++..+..+..+.+..+..+.+-. ++....-+...-.......+....++-+.+++++..++...|+|.+.+
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888765543 221100000000000111222334456778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc-------------------------------c----------------------
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFK-------------------------------T---------------------- 232 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~-------------------------------~---------------------- 232 (583)
+..++....++.++.+.+.++-..+. +
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y 351 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEY 351 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccc
Confidence 88777666666555554443311000 0
Q ss_pred ----------CCCCCCC---CCCCC----------C-------------------chhhhHHHHHHHHHHHhhhhhHHHh
Q 007966 233 ----------GWSGYEL---PTGYF----------P-------------------FGVNGMLAGSATVFFAFIGFDAVAS 270 (583)
Q Consensus 233 ----------~~~~~~~---~~~~~----------~-------------------~~~~~~~~~~~~~~fa~~G~e~~~~ 270 (583)
+.+.+.. ..++. + .--.++..-+...+.+.+|.-+.++
T Consensus 352 ~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSN 431 (1075)
T KOG2082|consen 352 FSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSN 431 (1075)
T ss_pred cccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCC
Confidence 0000000 00000 0 0012344455566788999999999
Q ss_pred hhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHH-Hc--c-hh-HHHHHHHHHHHHHHHH
Q 007966 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFA-SH--G-MH-WASYVITIGAVTALCS 345 (583)
Q Consensus 271 ~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~-~~--g-~~-~~~~i~~~~~~~~~~~ 345 (583)
.+++.|||+|.+|.+.+.+.+.+..+|+...+..+.++...-+.+. +.+... ++ + .. ...+++.++.++|.++
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~G 509 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTCG 509 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHhH
Confidence 9999999999999999999999999999988888887753332111 111110 00 0 01 1346888999999999
Q ss_pred HHhhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 346 TLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISV 423 (583)
Q Consensus 346 ~~~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~ 423 (583)
+.+.++.+++|++|+.|||+.+| ..|.|..++ |-|..|++++.+++-+-+++++.+.+..+.+..++++|.++.+++
T Consensus 510 AgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaC 588 (1075)
T KOG2082|consen 510 AGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLAC 588 (1075)
T ss_pred HHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999 999998888 999999999999999999999999999999999999999999998
Q ss_pred HHHhc-cCCCCCC
Q 007966 424 LILRY-VPPDEVP 435 (583)
Q Consensus 424 i~lr~-~~~~~~~ 435 (583)
...-. |.|++||
T Consensus 589 avqtLLrtPnWRP 601 (1075)
T KOG2082|consen 589 AVQTLLRTPNWRP 601 (1075)
T ss_pred HHHHHhcCCCCCc
Confidence 88754 5567666
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=3e-19 Score=171.84 Aligned_cols=281 Identities=18% Similarity=0.187 Sum_probs=186.8
Q ss_pred ccccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHH
Q 007966 42 RSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (583)
Q Consensus 42 ~~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~ 121 (583)
++...+-|+.+.+|.+..+++.+-+......+...+....|...+.+|+++++++++.+++++|+++++|++||.|.|++
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 44557899999999999998876433333334333334467779999999999999999999999999999999999999
Q ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhH
Q 007966 122 ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (583)
Q Consensus 122 ~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk 201 (583)
|++||..|++.||..|..+.....+.+.-.. .+.+.+...+.. . -..-+.....+...|.|
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--------~~~~i~~~~~~f----------~-~~~s~~~i~~~i~~~~~ 145 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVL--------LNFNIQNQFEQF----------L-IVESLFPIVLLIIANKK 145 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheee--------eeeeeHHHHHHH----------H-HHHHHHHHHHHHHcccH
Confidence 9999999999999999988876655432111 001111111100 0 11112223333345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCc
Q 007966 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (583)
Q Consensus 202 ~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~ 281 (583)
..+|...++.....+.- .....++ .+-.+ +++. . ......++....-+|.=.|+..++++|.||-+|.
T Consensus 146 ~~~~~v~il~~a~~i~a-------if~~~~s-~n~~~--~~f~-~-snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~ 213 (399)
T PHA02764 146 IYAKIVDILAIAQIIIA-------IFIAFKS-FNFQY--QNFT-I-SNTLLSALLFDLSAFIFINAISYIAGEIKNIKKS 213 (399)
T ss_pred HHHHHHHHHHHHHHHHH-------HHhhccc-eeEEE--ccee-e-hHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhh
Confidence 77777666555544311 1111111 11001 1111 0 1124455555566777889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (583)
Q Consensus 282 ~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 361 (583)
...+-..+...+.++-+..+ + +| + .++-+.+....++.+....--+||..++|
T Consensus 214 ~~~gyf~s~~~~~~~~ii~s--------y-----~n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~ 266 (399)
T PHA02764 214 SMIGYFVSYGIVAILSIIDS--------Y-----SN-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTM 266 (399)
T ss_pred hhhhhHHHHHHHHHHHHHHh--------h-----hh-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHH
Confidence 99999888887777655544 0 01 1 12222355666777777778899999999
Q ss_pred HhcCCCcccccccccccCCch
Q 007966 362 ARDGLLPPFFSDVNKTTQVPV 382 (583)
Q Consensus 362 a~dg~lP~~~~k~n~~~g~P~ 382 (583)
+-|+.+|++|+|.||+ +|+
T Consensus 267 ~fd~~lpe~f~k~~~n--v~~ 285 (399)
T PHA02764 267 SFDKVLPEKFSKINPN--VLL 285 (399)
T ss_pred HhhhhchHHHhccCCC--cee
Confidence 9999999999999985 887
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-19 Score=188.65 Aligned_cols=371 Identities=17% Similarity=0.257 Sum_probs=290.1
Q ss_pred ccccChHHHHHH-HHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCc-CCCchhhhHHHHh
Q 007966 48 AKNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYICV 124 (583)
Q Consensus 48 ~r~l~~~~~~~l-~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p-~~GG~y~~~~~~~ 124 (583)
+-+.|||+.++. ..-+++|.-.|...+++. .++|.. .++...+..++....+++..-.+++-. ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wiv-gqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIV-GQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhhee-ecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 346899999887 556788988999999875 556666 777777788899999999999999887 5899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
|+..|--.|.+|.++.....+.+..++++++...+..+. .+.++.++.+.+++...+|..|++|..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--------------~~~i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--------------KEMIDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--------------HHHhcchhHHHHHHHHHhhhccchhHH
Confidence 999999999999999999999999999999998885332 122334688888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCCC---CCCCCCCch--hhhHHHHHHHHHHHhhhhhHHHhhhhhhhC
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGF--KTGWSGYE---LPTGYFPFG--VNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~--~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~fa~~G~e~~~~~~~E~kn 277 (583)
++|.++..+.++....+++..+.... ..+...+. .+++..|.. -.++++.++..+.+.+|.-+.++++++.|+
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCC
Confidence 99988877777777666665543211 11111110 012222221 135677777889999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-----CC----hHHHHHHHcc-hhHHHHHHHHHHHHHHHHHH
Q 007966 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-----DT----PISSAFASHG-MHWASYVITIGAVTALCSTL 347 (583)
Q Consensus 278 P~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~-----~~----~~~~~~~~~g-~~~~~~i~~~~~~~~~~~~~ 347 (583)
|++++|++.+.+...+..+|.....-.+...-++.+.. +. +..+-++..- -.........+.+.+..++.
T Consensus 252 Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsa 331 (643)
T KOG2083|consen 252 PQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSA 331 (643)
T ss_pred chhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999887777665544333211 11 2333333321 12233466778888888889
Q ss_pred hhhhcchhHHHHHHHhcCCCc--ccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 348 MGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLI 425 (583)
Q Consensus 348 ~~~~~~~sR~l~~~a~dg~lP--~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~ 425 (583)
...+.+.++++|++.+|+..| .++.|...+.+.|.+++.++...+...+.++..+.+..+++...+.+|..+..+++.
T Consensus 332 lsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~ 411 (643)
T KOG2083|consen 332 LSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFH 411 (643)
T ss_pred HHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhh
Confidence 999999999999999999999 677888777799999999999999988888999999999999999999999989997
Q ss_pred HhccCCCC
Q 007966 426 LRYVPPDE 433 (583)
Q Consensus 426 lr~~~~~~ 433 (583)
.+...++.
T Consensus 412 aSl~~s~~ 419 (643)
T KOG2083|consen 412 ASLAISEG 419 (643)
T ss_pred hhhccccc
Confidence 77766553
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.81 E-value=1.7e-16 Score=164.11 Aligned_cols=340 Identities=14% Similarity=0.111 Sum_probs=246.3
Q ss_pred HHHhhhhhhhHHHhHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHH
Q 007966 59 IGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWAL 136 (583)
Q Consensus 59 l~~~~viG~gif~~~~~i~~~~~G~-~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~ 136 (583)
+.|+--+|.|++..|..+..+.|.. . +.++|+++++...+.+++ +.|++||.|.+.++..||+.|++.+|..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHH
Confidence 4455578999999999877665544 3 778899999988777776 8899999999999999999999999998
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007966 137 ILEYTIGG-----SAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVT 211 (583)
Q Consensus 137 ~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~ 211 (583)
+...-+.. ++.+...+ +...+... .......+.+++++.+..+++.++.|...+++++++
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~-------------~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LT 141 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLHSP-------------TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLT 141 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccCcc-------------cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHH
Confidence 86655543 22222211 22222110 001112245777777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhh-------hhhHHHhhhh-hhhCcCCchh
Q 007966 212 TANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFI-------GFDAVASTAE-EVKNPQRDLP 283 (583)
Q Consensus 212 ~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~-------G~e~~~~~~~-E~knP~k~~p 283 (583)
.++++.++.+++.++..+.. +.. .+..++... ..+..++....+++. |+-.+.+..+ |+|||+|+.|
T Consensus 142 P~lLi~l~~lii~g~~~p~g-~~~--~~~~~~~~~--~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~ 216 (378)
T TIGR00796 142 PALLVTLLALIIKALLWPAG-PIL--AASGAYASQ--QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITK 216 (378)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CcC--Ccccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999988865321 111 011111110 336667777778888 8888888888 9999999999
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCC----CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007966 284 LGIGTAL-SICCALYMLVSIVIVGLVPYYEMDP----DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (583)
Q Consensus 284 ~a~~~~~-~i~~vlyil~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 358 (583)
+++..+. ..+...|+..++++....+.++..+ .+...++.+...|+....++.+.+.++++++.++.+.+.++.+
T Consensus 217 ~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f 296 (378)
T TIGR00796 217 YTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYF 296 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7777888999999988887665432 2345566677778888999999999999999999887766654
Q ss_pred HHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCC-CCC
Q 007966 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLI--LRYVPPD-EVP 435 (583)
Q Consensus 359 ~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~--lr~~~~~-~~~ 435 (583)
. |.++| +|+++.++...+.+.++....++.++++..-...+.|-......+. +|++.|+ +++
T Consensus 297 ~-------------~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~ 361 (378)
T TIGR00796 297 H-------------KLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAV 361 (378)
T ss_pred H-------------HhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 3 44433 8999999998888888877889998888776665555555544444 5666555 556
Q ss_pred cccc
Q 007966 436 VPST 439 (583)
Q Consensus 436 ~~~~ 439 (583)
+|.+
T Consensus 362 y~~~ 365 (378)
T TIGR00796 362 YQIT 365 (378)
T ss_pred eehH
Confidence 5544
No 44
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.81 E-value=7.6e-17 Score=169.01 Aligned_cols=361 Identities=14% Similarity=0.067 Sum_probs=240.9
Q ss_pred HHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHH----HHhhhCcC-CCchhhhHHHHhCchHHHH
Q 007966 57 VAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYA----ELASRCPS-AGSAYHYSYICVGEGVAWL 131 (583)
Q Consensus 57 ~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~----el~s~~p~-~GG~y~~~~~~~g~~~g~~ 131 (583)
+++.+++.+|+|++..|.. .|.+.+++++++++++.+.++.+. |.....|+ +.+.++++++.+||+.|.+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 3456678999999999975 244467777777777777655544 44444444 5789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007966 132 IGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVT 211 (583)
Q Consensus 132 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~ 211 (583)
.++.|++.......+++.+.+..++..+.... .... ......+++++++...+...|.|...|++.++.
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~----------~~~~-p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQL----------GTAP-PLRGLLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCC-cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999888888777777666553110 0111 111135667777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhh----hhhhCc---CCchhh
Q 007966 212 TANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA----EEVKNP---QRDLPL 284 (583)
Q Consensus 212 ~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~----~E~knP---~k~~p~ 284 (583)
..+++.++++.+........ ++....+ .....+..++.++...+|+|.|+|.+++++ +|.+|| +|...|
T Consensus 153 ~~~ii~l~~l~~~lip~~~~---~~L~~~p-~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k 228 (397)
T TIGR00814 153 FPLVLILVLLSLYLIPHWNG---ANLTTFP-SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLR 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCH---HHHhcCC-cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHH
Confidence 98888877776665532211 1111111 111245678899999999999999999999 666655 477889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCC----CC-ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007966 285 GIGTALSICCALYMLVSIVIVGLVPYYEMD----PD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (583)
Q Consensus 285 a~~~~~~i~~vlyil~~~~~~~~~~~~~l~----~~-~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 359 (583)
++..+..+..++|++..+++....++++.. ++ +.+....+....++...+......++...+..+...+....+.
T Consensus 229 ~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~ 308 (397)
T TIGR00814 229 IMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLN 308 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999988852 12 2222233345667778888888888888888888888877777
Q ss_pred HHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 007966 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPST 439 (583)
Q Consensus 360 ~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~~~~~~~~ 439 (583)
.+.++..-++. .|.|++ .=.+.......++.......+.+-+.-+.+++.++.-.+.++--.+.-+|.|.-++||.+
T Consensus 309 ~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~ 385 (397)
T TIGR00814 309 GIVLNSLKMKG-KKINIR--KLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR 385 (397)
T ss_pred HHHHHHhcccc-cccCHH--HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC
Confidence 77743211100 012222 112222333333333444456666666666666655555554334444455665566654
Q ss_pred c
Q 007966 440 L 440 (583)
Q Consensus 440 ~ 440 (583)
.
T Consensus 386 ~ 386 (397)
T TIGR00814 386 I 386 (397)
T ss_pred c
Confidence 4
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.77 E-value=1.9e-15 Score=158.72 Aligned_cols=347 Identities=18% Similarity=0.177 Sum_probs=245.9
Q ss_pred cccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 49 r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
|+-+.+...++.+++.+|.|++..|... ...|.. ..+..++++.+.....+.++|.....|++.+..+.++|.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~--~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIAT--AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 4567788899999999999999999763 334443 7777778888888899999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007966 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (583)
Q Consensus 128 ~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~ 207 (583)
.+++.+..|++.......++..+.++.++..+...... +...+...+++..++..+...|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~------------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT------------DLSPWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999888888889888888888777532210 111113355566667777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHH
Q 007966 208 AIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (583)
Q Consensus 208 ~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~ 287 (583)
+.+...+++.++.+++..+.+...+ .... ....+..+...+.++...+++|.-...++.+++..++-+|+++|++.
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~---~L~~-~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~ 222 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPS---NLLD-APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAII 222 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHH---Hhhc-cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHH
Confidence 9999999998888777665322111 1111 11123456678889999999999999999999999966788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCC----CCC---ChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007966 288 TALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (583)
Q Consensus 288 ~~~~i~~vlyil~~~~~~~~~~~~~l----~~~---~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 359 (583)
.+..+..++|++..+++.+.+|+++. +.+ ++.....++. ++++...+..++..++..++..+...+....+.
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 122 2344445543 567778888888888888888776666555544
Q ss_pred HHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISV 423 (583)
Q Consensus 360 ~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~ 423 (583)
+.- .+.|++ ..-.....++.+...++.+..+-..+..+.-.+.....+...+..
T Consensus 303 d~~---------k~~~~~-~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~ 356 (394)
T PF03222_consen 303 DLF---------KLKNNS-SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPA 356 (394)
T ss_pred HHH---------cCCccc-cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHH
Confidence 322 111111 122334555555555555554433333333333333333333333
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.73 E-value=9.6e-15 Score=152.17 Aligned_cols=355 Identities=14% Similarity=0.053 Sum_probs=253.6
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
.+++.+.+...++..++.+|.|++..|... ...|-. +....++.++++...++.+.|....+|++-+...-+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~--a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVM--SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 367799999999999999999999999653 233443 77778888999999999999999999988789999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
|.+..+++..|.+-......++..+.++.++..+...+ ..+. +..++++.+++..+...|.|...
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~--------------~~~~llF~~~~~~iv~~gt~~vd 150 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPA--------------RAAGFGFALLVAFVVWLSTKAVS 150 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHHHHHHhhhhHHH
Confidence 99888877778777666777788888888877764211 1111 13467777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhh
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPL 284 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~ 284 (583)
|+++++...|++.+++.+...+.. -+.....+.....+..+...+.++...+++|.=...++.+.+..++-.|+++|
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~---i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGH---VQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 999999999988887666554321 11111111111111223457788999999999999999999998854468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCC----CCC---hHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 285 GIGTALSICCALYMLVSIVIVGLVPYYEMD----PDT---PISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 285 a~~~~~~i~~vlyil~~~~~~~~~~~~~l~----~~~---~~~~~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
++..+..+..++|++..+++.+..|+++.. ..+ ......++ .+.++...+..++..++..+|..+...+...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999977631 222 22233433 3556677777777777777777765555555
Q ss_pred HHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
.+.+.-+ +.+++ .-.....+++.+...++.+..+-..+.++.-.+.......+.++....|+.|
T Consensus 308 ~l~D~~k---------~~~~~-~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~R 371 (414)
T PRK10483 308 YLADLFG---------FDDSA-MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASR 371 (414)
T ss_pred HHHHHhC---------CCCcc-ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 11111 1222345677777777777777677777777777777776777766666554
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.70 E-value=3.7e-14 Score=147.69 Aligned_cols=353 Identities=12% Similarity=0.062 Sum_probs=247.8
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
+.....++..++.+|.|.+..|... +..|-. +....++.++++...++.+.|....+|++-+..+-+++.+||++..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~--a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDL--AGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 6666888999999999999999653 233443 7777888899999999999999999998888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~ 210 (583)
+++..|.+-......++..+.++.++..+..... .+...+..++++.+++..+...|.|...|+++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~------------~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLG------------YHANPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc------------CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 8888787766666777888888888777642100 0111113467778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC--CchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHH
Q 007966 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF--PFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (583)
Q Consensus 211 ~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~ 288 (583)
...+++.+++.+.....+. +.+...+.+... .......+.++...+++|.=...++.++...++-.|+.+|+++.
T Consensus 156 ~~~~ii~f~~~~~~l~~~i---~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~ 232 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQV---DYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVF 232 (415)
T ss_pred HHHHHHHHHHHHHHHhhcc---cHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHH
Confidence 9888888776655543211 111111111000 01123467788899999999999999999988655789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCC----CCChH----HHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 289 ALSICCALYMLVSIVIVGLVPYYEMD----PDTPI----SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 289 ~~~i~~vlyil~~~~~~~~~~~~~l~----~~~~~----~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
+..+..++|++...+..+.+|++++. +.+.+ ....+...+++...+..++..++..+|..+...+....+.+
T Consensus 233 Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 233 GSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877641 11122 22333445667777777777777777776654444444333
Q ss_pred HHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007966 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (583)
Q Consensus 361 ~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~ 431 (583)
.-+ +.+++ .-......++.+...++.+..+-..+.++...+.......+.++.+..|+.|+
T Consensus 313 ~~~---------~~~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 313 LFK---------IDNSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARK 373 (415)
T ss_pred HhC---------CCCcc-ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221 11111 22333466777888877777777777777777777777777777777766543
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.66 E-value=2.9e-13 Score=141.75 Aligned_cols=347 Identities=15% Similarity=0.162 Sum_probs=238.5
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
+.....++.+++.+|.|++..|-.. ...|.. ++...++.+.+....++.+.|.....|++.+..+-+++.+||+.++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~--~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAA--AGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 5567788899999999999999653 234444 6666666777788888889998888888778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~ 210 (583)
+....|++.......++..+.++.++..+... .. .+.+ .....+.+.+++..+...|.|...|+++++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~------~~-~~i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDW------TG-ISMS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh------cc-CCCC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999888888888888777666655311 00 0001 012345555556667788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHH
Q 007966 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (583)
Q Consensus 211 ~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~ 290 (583)
...+++.+++.+......... ++..+. +....-.+.++...+++|.=...++.++...++-+|..+|++..+.
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~---~~L~~~----~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHK---VNLLTL----PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCH---HHHhcC----CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999988876665544422111 111111 1111127788889999999999999999998876688999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCC----CCC---hHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007966 291 SICCALYMLVSIVIVGLVPYYEMD----PDT---PISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 291 ~i~~vlyil~~~~~~~~~~~~~l~----~~~---~~~~~~~~-~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
.+..++|++..+++.+..|+++.. ++. +..+..++ .+.++...+..++..++..++..+...+....+.+.-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988642 122 33344443 4667888888888888888888877666666665554
Q ss_pred hcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 363 ~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
+.+ .+++ + -.....++.+...++.+..+-..+..+.-.+...+.++..+..+..++.
T Consensus 303 ~~~--------~~~~-~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~ 359 (403)
T PRK15132 303 QRR--------NTVG-G-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQS 359 (403)
T ss_pred ccC--------cccc-C-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 0111 1 2224555666666555554433343444444445555555555555443
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.66 E-value=6.2e-13 Score=140.83 Aligned_cols=286 Identities=18% Similarity=0.108 Sum_probs=214.6
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCC-CchhhhHHHHh
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSA-GSAYHYSYICV 124 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~-GG~y~~~~~~~ 124 (583)
.+++-+..+.++..+++.+|.|+...|.. ...+|.. .+...++.+.+.....+++.|.....|++ .+.++-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a--~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA--FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 46677788889999999999999999964 3455665 66777778889999999999999999987 49999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
||+++.+....|.+.......++....++.+...+.... ...+....+..+++..++..+...|.+...
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~-----------~~~~~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQF-----------GLNPLPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhc-----------ccCCcchHHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999999999998888888888888777664211 011122334566777777778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCc-hh
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD-LP 283 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~-~p 283 (583)
|..+.+...+++.++++.+...... +.......+...+..+..++.++...+|+|.+.-.+.++.+|+|+++|+ ++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~ 228 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHW---NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVR 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHH
Confidence 9999999999888777766554322 1111111000113456778999999999999999999999999988877 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCC-------CCCChHHHHHHH-cchhHHHHHHHHHHHHHHHHHHh
Q 007966 284 LGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDTPISSAFAS-HGMHWASYVITIGAVTALCSTLM 348 (583)
Q Consensus 284 ~a~~~~~~i~~vlyil~~~~~~~~~~~~~l-------~~~~~~~~~~~~-~g~~~~~~i~~~~~~~~~~~~~~ 348 (583)
|++..+..+..++|++..+.....++++.- ++++....+... ...+.......+...++..++..
T Consensus 229 k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887731 122233333333 23444555666666666655533
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.64 E-value=1.3e-12 Score=136.17 Aligned_cols=367 Identities=12% Similarity=0.060 Sum_probs=240.6
Q ss_pred HHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhC-cCCCchhhhHHHHhCchHHHHHHHH
Q 007966 58 AIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRC-PSAGSAYHYSYICVGEGVAWLIGWA 135 (583)
Q Consensus 58 ~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~-p~~GG~y~~~~~~~g~~~g~~~~~~ 135 (583)
+..+++.+|.|++..|-.. ..+|.. .++..++++.+.......+.|..... |++.+.-+-+++.+|+++|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~--g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA--GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 5567889999999999653 334444 55556666777777778999999998 5566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007966 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (583)
Q Consensus 136 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~i 215 (583)
|++.......++...+...+...+... ...........+++++.++..+...|.|...|++.++...++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~q-----------l~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQ-----------LGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999888888888766666665543210 000011233568888888999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCC-C-CCCCC-chhhhHHHHHHHHHHHhhhhhHHHhhhhh----hh-----C-cCCch
Q 007966 216 LAMLFVIIAGSYLGFKTGWSGYEL-P-TGYFP-FGVNGMLAGSATVFFAFIGFDAVASTAEE----VK-----N-PQRDL 282 (583)
Q Consensus 216 i~~~~~ii~~~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~fa~~G~e~~~~~~~E----~k-----n-P~k~~ 282 (583)
+.++++.+..+.+....+..+... . ..... ......+.++...+++|.-.-.+++++.. .+ | .+|+.
T Consensus 173 ~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~ 252 (443)
T PRK13629 173 ASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC 252 (443)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH
Confidence 988888776664322222211110 0 00001 11134777889999999988888888777 42 2 23778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC----CCCh-HHHHHHHcch---------hHHHHHHHHHHHHHHHHHHh
Q 007966 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD----PDTP-ISSAFASHGM---------HWASYVITIGAVTALCSTLM 348 (583)
Q Consensus 283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~----~~~~-~~~~~~~~g~---------~~~~~i~~~~~~~~~~~~~~ 348 (583)
.|++..+.++..++|++..+++.+..|++++. ++.+ +.+..+...+ ++...+..++..++...+..
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFl 332 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFF 332 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988852 3334 4444454544 56777777777777777777
Q ss_pred hhhcchhHHHHHHHhcC-CCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007966 349 GSILPQPRILMAMARDG-LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 349 ~~~~~~sR~l~~~a~dg-~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
+...+.--.+..+.++. .-++. .|.|++ .. .+...+...++.......+.+-+.-+.+++.++.-.+.++--.+.-
T Consensus 333 Gv~LGl~E~l~gl~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i 409 (443)
T PRK13629 333 GHYLGTLEGLNGLILKFGYKGDK-TKVSLG-KL-NTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAI 409 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cccCHH-HH-HHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77777777777766431 11100 022322 11 1122223333333444456666666666666555444444333333
Q ss_pred ccCCCCCCccccc
Q 007966 428 YVPPDEVPVPSTL 440 (583)
Q Consensus 428 ~~~~~~~~~~~~~ 440 (583)
+|.|.-++||.+.
T Consensus 410 ~kvp~l~~yr~~~ 422 (443)
T PRK13629 410 RKAPSLAKYRGRL 422 (443)
T ss_pred HccHHHHHhCCCc
Confidence 4556555555444
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.63 E-value=9.4e-13 Score=135.60 Aligned_cols=288 Identities=16% Similarity=0.209 Sum_probs=229.9
Q ss_pred ccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHH
Q 007966 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (583)
Q Consensus 50 ~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g 129 (583)
|+|.++...+.+..++|++....|...+.+. | ++|++.+++++...+..+.+..+.+++|+. ....+.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-G-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 5788999999999999999999999876544 6 899999999999999999999999999985 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 007966 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (583)
Q Consensus 130 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~ 209 (583)
...+..|...+....+.....+++.+...+. .+.|.+ .+...+++.+.....+|.+...|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--p~TP~~--------------~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL--PETPIW--------------VIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCCHH--------------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999988888887663 222222 356677788888999999999997777
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHH
Q 007966 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (583)
Q Consensus 210 ~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~ 289 (583)
.....++.++++.+... ... ++++-.+..+.++..++.+.....+.+.|.|....+.+.+|||+| ..|....+
T Consensus 142 ~~~~~~i~~~~i~~~~~---~~~---~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSI---PNI---DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHhc---ccC---CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHH
Confidence 77766666555443332 111 122223345567778888888889999999999999999999754 78999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCC-CChHHHHHHHcchh-H---HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHh
Q 007966 290 LSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMH-W---ASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (583)
Q Consensus 290 ~~i~~vlyil~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~~-~---~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 363 (583)
.++++++|.+..+.....+++++.+. .-|..+..+...-+ . +..++......+.+......+++.++.+..+-+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999887643 46888877776322 3 344677777778888888888888888776543
No 52
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.57 E-value=8.7e-13 Score=135.11 Aligned_cols=297 Identities=19% Similarity=0.236 Sum_probs=216.6
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcC-------CCchhhh
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-------AGSAYHY 119 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~-------~GG~y~~ 119 (583)
.++.++.++.++.+.++.+|+|+...... +...|||+++.+..+.+++.....+.-.-|+..|++ .||...|
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 46789999999999999999999987766 568899997766666788888889999999999973 2799999
Q ss_pred HHHHhC-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 007966 120 SYICVG-EGVAWLIGWALILEYT-IGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (583)
Q Consensus 120 ~~~~~g-~~~g~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 197 (583)
+++.+| |++|.+.+....+.+. .....+++++++++...++ .|.+ ..++++.++..++..
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~----~~~~--------------~~gi~la~l~~~VI~ 199 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG----IPPL--------------VTGIVLALLVALVIF 199 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC----CcHH--------------HHHHHHHHHHHHHHH
Confidence 999998 4577777777777776 4678888888888888775 2222 347788888888889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCCCCc----hhh------hHHHHHHHHHHH---h
Q 007966 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFPF----GVN------GMLAGSATVFFA---F 262 (583)
Q Consensus 198 ~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~----~~~------~~~~~~~~~~fa---~ 262 (583)
.|+|...++......++-+..++..+..+....+.-++.... .+.+.+. +.. .+..++.-..|+ =
T Consensus 200 GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAG 279 (452)
T COG1115 200 GGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAG 279 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccccc
Confidence 999999999998888887776666555443322211100000 0112221 111 122333334454 3
Q ss_pred hhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---CCChHHHHHHHcchhHHHHHHHHHH
Q 007966 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---PDTPISSAFASHGMHWASYVITIGA 339 (583)
Q Consensus 263 ~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~---~~~~~~~~~~~~g~~~~~~i~~~~~ 339 (583)
.|....++.+.+++||.|+--..+.-..+-+.+++....+++...-.++..+ ...-...++++..+++..+++.+.+
T Consensus 280 mGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l 359 (452)
T COG1115 280 MGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIAL 359 (452)
T ss_pred CCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHH
Confidence 5777888888999999998877777777767777777777776654333222 1223355778877889999999999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHH
Q 007966 340 VTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
++..++++.++.+..-|.+.-+.
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988775
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.54 E-value=9.5e-12 Score=129.23 Aligned_cols=297 Identities=18% Similarity=0.235 Sum_probs=207.8
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcC-------CCchhhh
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-------AGSAYHY 119 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~-------~GG~y~~ 119 (583)
.+++++.++.+..++++.+|+|+...... +...|||+++++..+.+++.....++-.-|+..|++ .||...|
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yy 93 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYY 93 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHH
Confidence 35679999999999999999999987766 568899998777777889999999999999999873 2799999
Q ss_pred HHHHhCch-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 007966 120 SYICVGEG-VAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (583)
Q Consensus 120 ~~~~~g~~-~g~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 197 (583)
+++.+|.+ ++.+.+......+... ...+++++++.++..++ .+.+ ..++++..++.++..
T Consensus 94 i~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~----i~~~--------------~~gi~l~~l~~~vi~ 155 (416)
T PF01235_consen 94 IEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG----IPPW--------------ITGIILAILVALVIF 155 (416)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc----ccHH--------------HHHHHHHHHHHHHHH
Confidence 99999865 5555555544444333 45566666666655443 2211 346777777788888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCCCCc----hhhhHH------HHHHHHHHH---h
Q 007966 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFPF----GVNGML------AGSATVFFA---F 262 (583)
Q Consensus 198 ~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~------~~~~~~~fa---~ 262 (583)
.|+|...++...+..++.+..++..+..+..+..+-+..+.. ...+.+. +..+.. .++.-.+|+ =
T Consensus 156 GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG 235 (416)
T PF01235_consen 156 GGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAG 235 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCC
Confidence 999999999999999998887777666554322221100000 0111121 222221 122233444 3
Q ss_pred hhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---CCChHHHHHHHcchhHHHHHHHHHH
Q 007966 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---PDTPISSAFASHGMHWASYVITIGA 339 (583)
Q Consensus 263 ~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~---~~~~~~~~~~~~g~~~~~~i~~~~~ 339 (583)
.|....++-+.|.|+|.|+--.+++-..+-+.+++.+..+++...-.++... ..+-...+++..-+++..+++.+++
T Consensus 236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l 315 (416)
T PF01235_consen 236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIAL 315 (416)
T ss_pred CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5888888889999999998888888888777777777777766543322221 1223455777766688899999999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHH
Q 007966 340 VTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
++..++++.++.+..-|.+.-+.
T Consensus 316 ~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 316 FLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998887765
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.45 E-value=1.4e-10 Score=121.35 Aligned_cols=296 Identities=15% Similarity=0.169 Sum_probs=194.4
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcC--C-----CchhhhH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS--A-----GSAYHYS 120 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~--~-----GG~y~~~ 120 (583)
+++++.++.+....++.+|+|+....... ...+||+++++..+++++.....+.-.-++..+.+ + ||...|.
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATA-IAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 35699999999999999999976666553 67899997666666777777777777778887762 2 3444888
Q ss_pred HHHhC-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHh
Q 007966 121 YICVG-EGVAWLIGWALILEY-TIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (583)
Q Consensus 121 ~~~~g-~~~g~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~ 198 (583)
++.++ |++|.+.+.. .+.+ ......+++..++.+...++ .|.+ ..++++.++..++...
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~----~~~~--------------v~~i~l~~l~~~vi~G 183 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN----VPKL--------------VTGIVLTVLTALIIFG 183 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----CcHH--------------HHHHHHHHHHHHHHhc
Confidence 88886 6677777766 3333 33456666666666654431 2221 3466666666677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCCCCc----hhhhH------HHHHHHHHHH---hh
Q 007966 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFPF----GVNGM------LAGSATVFFA---FI 263 (583)
Q Consensus 199 gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~------~~~~~~~~fa---~~ 263 (583)
|+|...++......++.+..++..+........+-++.+.. ...+.+. +..+. -.++.-..|+ =.
T Consensus 184 Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 184 GLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 99999999999999888876555443332211110000000 0112221 22221 1133334454 35
Q ss_pred hhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCC---CCCCCChHHHHHHHcchhHHHHHHHHHHH
Q 007966 264 GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY---EMDPDTPISSAFASHGMHWASYVITIGAV 340 (583)
Q Consensus 264 G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~---~l~~~~~~~~~~~~~g~~~~~~i~~~~~~ 340 (583)
|....++-+.|++||.|+--.++.-..+-+.+++.+..+.+...-.++ .++..+-...+|+...++|..+++.+.++
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888889999999998878887777777777777777665443222 11111223456777656788899999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHHh
Q 007966 341 TALCSTLMGSILPQPRILMAMAR 363 (583)
Q Consensus 341 ~~~~~~~~~~~~~~sR~l~~~a~ 363 (583)
+..++++.++.+..-+.+.-+..
T Consensus 344 lFaftTii~~~yyge~~~~yl~~ 366 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFLKG 366 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988888777643
No 55
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.29 E-value=3.7e-09 Score=111.48 Aligned_cols=358 Identities=15% Similarity=0.094 Sum_probs=206.5
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHH-HHHHHHHHHHHHHHHHHHHHHhhhCcCCCc-----hhhhH
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPAL-ALSFLIAGIASAFSAFCYAELASRCPSAGS-----AYHYS 120 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~-i~~~ii~~l~~~~~~l~~~el~s~~p~~GG-----~y~~~ 120 (583)
.+|+.+|++..+-.++.++|.|+...|.. ..+.|+.. +...++.+++.+-.+....+.-...+...| .-+-.
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A--~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYA--LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHH--HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 46789999999999999999999999964 45677764 777777888888888888888888887667 66788
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007966 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (583)
Q Consensus 121 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gv 200 (583)
++++|++.-.+.++...+.....+..+....++.+..++..+-.... ... ......+.+++.+.... +...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~~f~iif~~i~~~~s~---lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQYFIIIFGLIVLPLSQ---LPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ceehhhhHHHHHHHHHH---CCCc
Confidence 89999877556666666655555555666666666666532211100 000 11111122332222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH-HHHHHHHHHHhhhhhHHHhhhhhhhCcC
Q 007966 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM-LAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (583)
Q Consensus 201 k~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fa~~G~e~~~~~~~E~knP~ 279 (583)
....++........+.........+.......+... .+....+..+. +.++....|+|.|.-.....-.++|+|+
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~----~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~ 258 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPS----GGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPP 258 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcc----cCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCch
Confidence 333333333333333333333333433221111110 11111111122 7888899999999999999999999998
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007966 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (583)
Q Consensus 280 k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 358 (583)
| ++|+.+.+..+++++|+..++.-..+++++..+ +...+. ...|+.....+.+.+-.+++.-.......-..
T Consensus 259 ~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~ 331 (437)
T KOG1303|consen 259 K-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVV 331 (437)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHH
Confidence 8 999999999999999999999888887665432 122333 35666666666666666665543222222222
Q ss_pred HHHHhcCCCcccccccc-cccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 359 MAMARDGLLPPFFSDVN-KTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 359 ~~~a~dg~lP~~~~k~n-~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
..+ .+.-++.+.+.+ .. +.=.+...+ .....+-..++.++.+.++.+.........+.-+.++++.++
T Consensus 332 E~~--~~~~~~~~~~~~~~~-R~~~Rt~~v-~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k 400 (437)
T KOG1303|consen 332 EKL--IGVKHPDFKKRSLVL-RLLVRTFFV-AVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKK 400 (437)
T ss_pred HHH--hccCCccccccccce-eeehhhHHH-HHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 221 111222132211 01 111222211 111122234567888888887665555555544555554443
No 56
>PTZ00206 amino acid transporter; Provisional
Probab=99.27 E-value=3.1e-08 Score=107.13 Aligned_cols=252 Identities=14% Similarity=0.164 Sum_probs=149.3
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
|..+..+-.+.+++|.|+...|.. +.+.|.. .++..++.+++.......+.+.+..- +.-...+-.++++||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A--f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA--ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHH
Confidence 335566667778899999999975 4566665 55555555665555555566665553 3335667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~ 210 (583)
++....++.....+.++....++.+...+.+.+ .+.+.... ....... ..+.+++.+-+.-.+.++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-~~~~~~~~--~~~r~~~--~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTN-APDFLKQK--SGNRLLT--SLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhhhc--cCcEEee--eehhhhHhhhcccccchHHHHHHHHHH
Confidence 999988888888888888888888777764321 11121110 0011111 111111222223345566666654333
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCC---CC-CCCCCc-hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcC-Cchhh
Q 007966 211 TTANVLAMLFVIIAGSYLGFKTGWSGYE---LP-TGYFPF-GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPL 284 (583)
Q Consensus 211 ~~~~ii~~~~~ii~~~~~~~~~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~-k~~p~ 284 (583)
....+...+.+++.........+.++.. .+ ...... .....+.++...+|+|.+.......-+|+|||. |++.+
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~ 292 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVL 292 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHH
Confidence 2222221111111111111111111000 00 000001 123477889999999999999999999999976 77889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC
Q 007966 285 GIGTALSICCALYMLVSIVIVGLVPYY 311 (583)
Q Consensus 285 a~~~~~~i~~vlyil~~~~~~~~~~~~ 311 (583)
.+..+..++.++|.+..+.-...++++
T Consensus 293 v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 293 ASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999999999999888877777654
No 57
>PLN03074 auxin influx permease; Provisional
Probab=99.25 E-value=5e-08 Score=105.14 Aligned_cols=237 Identities=11% Similarity=0.009 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHH----HHhhhCcCCCch--------
Q 007966 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYA----ELASRCPSAGSA-------- 116 (583)
Q Consensus 50 ~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~----el~s~~p~~GG~-------- 116 (583)
+-+..+...-.....+|.|++..|.. +.++|.. .++..++.+++..-...... |...+.|+.+-.
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~A--f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYS--FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHH--HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 45555555558888899999999975 4667776 55555555555544444433 566666653311
Q ss_pred hhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHH
Q 007966 117 YHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL 196 (583)
Q Consensus 117 y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 196 (583)
..-.++.+||.++.+......+.....+.......+..+. .+. . .. .....+.+++++.+.+..
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~-~l~--~---------~~-~~~~~~~i~~~v~~~~~~--- 186 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIY-YIN--D---------NL-DKRTWTYIFGACCATTVF--- 186 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhh-hhC--C---------Cc-CCCeEEeehHHHHHHHHH---
Confidence 2223446788877766444443333333222222121111 110 0 00 111111122222222222
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhh
Q 007966 197 CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (583)
Q Consensus 197 ~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~k 276 (583)
.+..|..+++..+.....+.....+.+...... ..+... .. .+.....++.++.+++|+|.|.-...++-+|||
T Consensus 187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~---~~~~~~--~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~ 260 (473)
T PLN03074 187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHG---QVEGVK--HS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW 260 (473)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCC--CC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhcc
Confidence 333444444332222222222122222221111 111111 11 123455677777789999999999999999999
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 007966 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY 311 (583)
Q Consensus 277 nP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~ 311 (583)
||+ ++++....+...+..+|+...+......+++
T Consensus 261 ~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 261 KPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred Chh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 996 5999888888888888888766665556543
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.18 E-value=3.1e-08 Score=103.11 Aligned_cols=350 Identities=16% Similarity=0.118 Sum_probs=207.0
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH--HHHHHHHHHHHHHH---HHHHHHHHhhhCcC----------
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA--LALSFLIAGIASAF---SAFCYAELASRCPS---------- 112 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~--~i~~~ii~~l~~~~---~~l~~~el~s~~p~---------- 112 (583)
++..+..+...--+-+++|+|.+..|.. +.++|.. .+...+++.+...+ ..-+.-+++++..+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A--Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA--FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH--HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 4458888888888889999999999974 5667764 44444444443332 34455666666422
Q ss_pred ---CCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHH
Q 007966 113 ---AGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILV 189 (583)
Q Consensus 113 ---~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (583)
.+|.- | .|.+|+...+++-....+.+...+..+....++-+...+.... ......++..++.+
T Consensus 122 ~a~~~~~~-~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~------------~~~~s~~~~i~~~~ 187 (449)
T KOG1304|consen 122 SAMEGGPG-W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS------------PGVLSVRLYILIQL 187 (449)
T ss_pred HHHcCCcH-H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC------------CCCccHHHHHHHHH
Confidence 13333 6 7778888888888888888887777776666666665553100 01111222233333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHH
Q 007966 190 LIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVA 269 (583)
Q Consensus 190 ~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~ 269 (583)
.....++ -+|..+++.-......+.+++.++++..+. ..+.+ +..+.+.+. ++.++...+..++|||-|.-.+-
T Consensus 188 ~~~lll~--~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~-~~~~~-~~~~~~~~~--~~~~~~lf~GtaifafEGig~VL 261 (449)
T KOG1304|consen 188 PPLLLLN--LIRNLKILSPFSLFANVFILVGLAIIMYYL-VQDLP-PTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVL 261 (449)
T ss_pred HHHHHHH--HHHhhHHhhHHHHHHHHHHHHHHHHHHHHH-HhccC-Ccccccccc--chhhhHHHHHHHHHHhccceEEE
Confidence 3333333 344555555555555555555544444332 22222 222122222 36677778889999999999999
Q ss_pred hhhhhhhCcCCchh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHH
Q 007966 270 STAEEVKNPQRDLP---LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCST 346 (583)
Q Consensus 270 ~~~~E~knP~k~~p---~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 346 (583)
++=+++|+|++ +| +.+-.++.+++++|+..-+.-....+++--+. +--++...++...+.+...++.+-+
T Consensus 262 PlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai~I~ls 334 (449)
T KOG1304|consen 262 PLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAIAIFLT 334 (449)
T ss_pred ehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHHHHHHc
Confidence 99999999964 88 99999999999999888776666665543111 1112233445555555566555555
Q ss_pred HhhhhcchhHHHHHHHhcCCCcccccccccc--cCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 347 LMGSILPQPRILMAMARDGLLPPFFSDVNKT--TQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVL 424 (583)
Q Consensus 347 ~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~--~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i 424 (583)
---..+.+-+++..- +.+++.+ +|+ ...-.+..++....... .++++++..+++.+..+.....+++-+++
T Consensus 335 ~pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA-~~iPnL~~fisLVGs~~~s~L~li~P~li 407 (449)
T KOG1304|consen 335 YPLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIA-VAVPNLALFISLVGSVSCSLLALIFPPLI 407 (449)
T ss_pred CchhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHH-HHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence 444444455554443 2223331 111 01111222222222111 22688999999999998888888888888
Q ss_pred HHhccCCCC
Q 007966 425 ILRYVPPDE 433 (583)
Q Consensus 425 ~lr~~~~~~ 433 (583)
-+.-..++.
T Consensus 408 el~~~~~~~ 416 (449)
T KOG1304|consen 408 ELITFYPEG 416 (449)
T ss_pred HHHHhcccc
Confidence 887665553
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.97 E-value=1.7e-05 Score=86.10 Aligned_cols=328 Identities=16% Similarity=0.099 Sum_probs=161.0
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHH
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~ 122 (583)
+.+|+.++++.+.+=++..+....+...+... ..|.+ ++++.+++.++........+..+.++-- +.....|.
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l--~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~ 97 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF--ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRA 97 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHH
Confidence 35788999999988777666655543333322 13443 5555555555444444444444444432 57778899
Q ss_pred HhCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----ccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 007966 123 CVGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLF----GSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (583)
Q Consensus 123 ~~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 197 (583)
.||.+-+.+.+.... +..+.+.+.+....++.+...+ .+..+.+..+.. ...+....++.+++.++.+.+..
T Consensus 98 sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~---~g~~~~~~i~~~i~~~l~~~~~~ 174 (484)
T PRK11375 98 SYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTL---LGLSLPGLITFLIFWLVNVGIGF 174 (484)
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc---CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999886677776663 4555555555555555554333 222222111100 00010011222333344555567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-C-CCCCC--CchhhhHHHHHHHHHHHhh-hhhHHHhhh
Q 007966 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE-L-PTGYF--PFGVNGMLAGSATVFFAFI-GFDAVASTA 272 (583)
Q Consensus 198 ~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~fa~~-G~e~~~~~~ 272 (583)
.|.|..++++.+...+.++..+.+.+..+... ++.... . +.+.. ......+..++...+-++. +.-..+.++
T Consensus 175 ~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~t 251 (484)
T PRK11375 175 GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFT 251 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchh
Confidence 88999999998888887766555544443322 221111 0 11000 1112233333322222222 444566777
Q ss_pred hhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH-hhh
Q 007966 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVI-VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL-MGS 350 (583)
Q Consensus 273 ~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~-~~~ 350 (583)
...|+| |+.-++...+..+...+..+..+.. ............+|. ++..+.+...+..+..+..++++.++- ...
T Consensus 252 Ry~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N 329 (484)
T PRK11375 252 QNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGN 329 (484)
T ss_pred cccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 778886 4455666666655554432222222 111111001123343 344444434444445555666666653 345
Q ss_pred hcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh
Q 007966 351 ILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (583)
Q Consensus 351 ~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~ 398 (583)
+++++--+ .+.+||++ |+| ++.++.++++.++...
T Consensus 330 ~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 330 IIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred cccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 55554443 44567543 222 2555555665554433
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.92 E-value=2.4e-05 Score=82.16 Aligned_cols=243 Identities=11% Similarity=-0.023 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 007966 85 LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164 (583)
Q Consensus 85 ~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 164 (583)
++++.+++.++........++++.....+ ...-.|..+|.+-+.+.....++.++-+.+......++. ......
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a----~~~~~~ 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA----IGSGTG 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc----cccCCC
Confidence 66667777776666666777777666543 455567778998888888888888877777666555544 111122
Q ss_pred hhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 007966 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF 244 (583)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 244 (583)
.|.+ ...++.-.+.++....|.|...+++++.....++..+..+...+- ..+..+.. ....
T Consensus 128 ~~~~--------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~---~~~~~~~~--~~~~ 188 (442)
T COG1457 128 LPVW--------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFR---SKGGLDAL--WVKG 188 (442)
T ss_pred CcHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccccee--eccC
Confidence 2221 234455556777788999999999999988887776665544431 11111111 1112
Q ss_pred CchhhhHHHHHHHHHH-HhhhhhHHHhhhhhhhCcC--CchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHH
Q 007966 245 PFGVNGMLAGSATVFF-AFIGFDAVASTAEEVKNPQ--RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS 321 (583)
Q Consensus 245 ~~~~~~~~~~~~~~~f-a~~G~e~~~~~~~E~knP~--k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~ 321 (583)
|..+.++..++..++- ...+--.++.++.-.|+|+ |.+--+.....+-...+++++.......-.++ +..+
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~------~~~~ 262 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD------SIAD 262 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------hHHH
Confidence 4445556655544432 3344445667777777766 44443444444444455555555444433222 3555
Q ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 322 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 322 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
.....|+ +....-+.+.++..++-...+++.+=-.+.
T Consensus 263 ~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 263 VMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred HHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555554 445555566666666655556555544444
No 61
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.90 E-value=4.4e-06 Score=82.84 Aligned_cols=269 Identities=15% Similarity=0.185 Sum_probs=161.2
Q ss_pred HHHHHhhhhhhhHHHhHHHH-HHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHH
Q 007966 57 VAIGVGSTIGAGVYILVGTV-AREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (583)
Q Consensus 57 ~~l~~~~viG~gif~~~~~i-~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~ 135 (583)
.+..+++++|.|--..-.-. .+..-|...+++.++.+++....+....|+++.+.. ...-.+.++.+||+++.+--..
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~~ 87 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDII 87 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHHH
Confidence 34455677877643332211 122245668999999999999999999999999985 4677899999999999876554
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Q 007966 136 LILEYTIGGSAVARGIS-PNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG-IKESTIAQAIVTTA 213 (583)
Q Consensus 136 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~g-vk~~~~i~~~~~~~ 213 (583)
..+. .+..+.+..+.+ ..+...++ .|.|.. +++++.+..+...++ +|...+++.+...+
T Consensus 88 iif~-lf~~~vVM~AGags~~~e~~~----lP~wiG--------------ali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 88 IIFF-LFSTAVVMLAGAGSLLEEMFG----LPYWIG--------------ALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred HHHH-HHHHHHHHhccchhHHHHHhC----ccHHHH--------------HHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 4443 333333333332 24444443 555531 355555555666666 77777777766666
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHH
Q 007966 214 NVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSIC 293 (583)
Q Consensus 214 ~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~ 293 (583)
.++.+......... ..+++..+.+... .+ +|..-... +...--........++++|+|++ |+..+|-..+-++.
T Consensus 149 LIi~l~~v~~~~~f-~~~~~~a~~~~~~--~~-~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIl 222 (349)
T COG3949 149 LIIILVLVTLSFQF-TNLGNAAQIVLTK--QG-NWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLIL 222 (349)
T ss_pred HHHHHHHHHHHHHH-hhccchhhhcCCc--CC-ChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHH
Confidence 66553332222111 1111111111111 11 12211111 11112223444556778999995 78889999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007966 294 CALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (583)
Q Consensus 294 ~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~ 353 (583)
+++..+.+.++....+ +--+.|-|..+...+.. +....++.+.+.....++....+++
T Consensus 223 gvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 223 GVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887665 22234557887777765 5555677777777777777665544
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.90 E-value=3.6e-10 Score=120.48 Aligned_cols=360 Identities=14% Similarity=0.112 Sum_probs=192.6
Q ss_pred cccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCc---CCCchhhhHHHHh
Q 007966 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP---SAGSAYHYSYICV 124 (583)
Q Consensus 49 r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p---~~GG~y~~~~~~~ 124 (583)
||-|+++..+..++.++|.|.+..|.. ..+.|.. .+...++.+++.......+.|.....+ +.-...+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a--f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA--FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH--HHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467899999999999999999999975 4556665 666666677777778888888888765 3334555668889
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHH-HHhhhHHH
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGL-LCVGIKES 203 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i-~~~gvk~~ 203 (583)
|++.+++......+........+.....+.+...+...... ....... ..++...+..-+ ..+..+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--------~~~~~~~---~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--------LFISRYV---WIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc--------ccccccc---cccccccccccccccchhhHH
Confidence 99988887777766665555554444444444433211100 0011111 111111111111 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCC--c
Q 007966 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR--D 281 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k--~ 281 (583)
+.+..+ +.+.++..+.+.+............+...++...+..+.++..++....|+|.+.....++.+|+|||+| .
T Consensus 148 ~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 148 RYLSIL-GLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHhhh-hhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 332222 1111111101111111111111111111111122344578899999999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchh-HHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 282 ~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
..|....+..++.++|++..+.-...++++. ++ .+..+.... +...+..+...+..+.+.........+.+..
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDSV-QG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeeee-cc-----hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 4499999999999999999888877765432 11 233333222 3444555555555555544444444455544
Q ss_pred HHhcC-----CCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 361 MARDG-----LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 361 ~a~dg-----~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
.-+++ .-++.-.+ ++....-.+..++ .....+-...++++.+.++.+........++.-+++.++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 301 LLFKRAASSRDSPKNTPS-SRWLRYLIRIILV-LLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred heeccccccccccccccc-cceeeeeeecchh-hhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 44321 11111111 0000111111111 111111234477888888887665444444444444444333
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.65 E-value=0.00085 Score=70.88 Aligned_cols=364 Identities=16% Similarity=0.092 Sum_probs=183.2
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
+.+|+.++++.+.+=.+.+.-.+.+...+.......++. ++.+.+++-++.......-+..++.+.- +.-.-.|..|
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~RaSF 113 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRASF 113 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHHHH
Confidence 457899999998886666655555555444322222333 7777777777666666666666666543 3556777888
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CChhhhhhhccCCCCccchhHHHHHHHHHHHH-HHHhhh
Q 007966 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA---DSLPFFMARQQIPGLGIIVDPCAAILVLIVTG-LLCVGI 200 (583)
Q Consensus 125 g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-i~~~gv 200 (583)
|-+-+-+-...-.+.-+.+...++...+..+..++... ...+... ......+.. ..++.++++.+.+ +..+|+
T Consensus 114 Gi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~--~~~lg~tt~-~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 114 GIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTL--SPLLGLTTL-ELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCcc--ccccCCcHH-HHHHHHHHHHHHHHHHhcCH
Confidence 87766555555555555555555555544444333211 1111100 001111121 2345666665544 446899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-C-CCchhhhHHHHH-HHHHHHhhhhhHHHhhhhhhhC
Q 007966 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTG-Y-FPFGVNGMLAGS-ATVFFAFIGFDAVASTAEEVKN 277 (583)
Q Consensus 201 k~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~fa~~G~e~~~~~~~E~kn 277 (583)
+..+|++.+.+.+..+..+.+.+.........+. ..+.+.+ . .+..+..++.++ .+.-+--+..-.+..++.+-|+
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~-~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSI-LGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCc-cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 9999999999999988888777766643221110 1111111 1 112222233322 1122222344556667777777
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCCCChHHHHHHHcchhHHHH-HHHHHHHHHHHHH-Hhhhhcc
Q 007966 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVP--YYEMDPDTPISSAFASHGMHWASY-VITIGAVTALCST-LMGSILP 353 (583)
Q Consensus 278 P~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~--~~~l~~~~~~~~~~~~~g~~~~~~-i~~~~~~~~~~~~-~~~~~~~ 353 (583)
| |+.-++-.+++-+...++.+..+......- +.+ +-.+|. ++..+........ +..+...+++.+. +.+...+
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~-~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGE-TIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCc-ccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 5 455566666666666555555444433211 111 111233 4445544333333 5555555555553 3333433
Q ss_pred hhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh---hC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF---MD----VSALAGMVSVGTLLAFTMVAISVLIL 426 (583)
Q Consensus 354 ~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~---~~----~~~l~~l~~~~~~~~~~~~~~a~i~l 426 (583)
+.-=+. +.+||.... || +-++.++++.++.-. .+ .+.+........++.=. +..-++..
T Consensus 347 p~~D~s-----~l~Pk~in~--kr------g~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGV-miaDyfli 412 (497)
T COG1953 347 PGYDLS-----ALFPKYINI--KR------GGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGV-MIADYFLV 412 (497)
T ss_pred hHHHHH-----Hhcccccch--hh------hHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 333222 356766552 33 455556665543222 12 12233333333333333 33478888
Q ss_pred hccCCC
Q 007966 427 RYVPPD 432 (583)
Q Consensus 427 r~~~~~ 432 (583)
||++.+
T Consensus 413 rk~~~~ 418 (497)
T COG1953 413 RKGRLN 418 (497)
T ss_pred hcCccC
Confidence 877654
No 64
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.65 E-value=0.00046 Score=74.41 Aligned_cols=241 Identities=11% Similarity=-0.018 Sum_probs=126.0
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHH
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~ 122 (583)
+.+|+.++++...+=++..+....+...+... . .|.+ ++++.+++.++........+..+.++-- ......|.
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~ 84 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRA 84 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhh
Confidence 34677899999999887777666565554322 2 2332 6666666666555555555666655543 46778899
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHH--HHHHhhh
Q 007966 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVT--GLLCVGI 200 (583)
Q Consensus 123 ~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~i~~~gv 200 (583)
.||.+-+.+.+...++..+.+.+.+....++++...+.... +... ..+.+......++++++..+. .....|.
T Consensus 85 ~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~--~~~~---~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~ 159 (442)
T TIGR00800 85 SFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIF--PGYL---HLGNGMTTLELICFIIFWALVLVFLFFFGY 159 (442)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cccc---ccCCcccHHHHHHHHHHHHHHHHHHHcCHH
Confidence 99999888889998888888888888777776655543110 0000 000000001122333333322 2344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CCCCCC-CCCchhhhHHHHHHHH-HHHhhhhhHHHhhhhhhhC
Q 007966 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG-YELPTG-YFPFGVNGMLAGSATV-FFAFIGFDAVASTAEEVKN 277 (583)
Q Consensus 201 k~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-~fa~~G~e~~~~~~~E~kn 277 (583)
|...+.+.......++.+++.+. .... .++..+ ...+.. ..+....+++.++... -+..++...++.++...|+
T Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 160 KIRHLFEWLAVVPPFAAFGMLIW-ALSK--AHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH--cCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 65555554444444443333322 2211 111111 111110 1122334444444332 2334566677888888888
Q ss_pred cCCchhhHHHHHHHHHHHHHHH
Q 007966 278 PQRDLPLGIGTALSICCALYML 299 (583)
Q Consensus 278 P~k~~p~a~~~~~~i~~vlyil 299 (583)
|+ +-.++...+.....+...+
T Consensus 237 ~~-~~~~~~~~~~~~~~~~~~~ 257 (442)
T TIGR00800 237 KK-TAIWGQFLALPGGFTLTCF 257 (442)
T ss_pred cc-chHHHHHHHHHHHHHHHHH
Confidence 64 4445555555444444333
No 65
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.65 E-value=0.00023 Score=75.98 Aligned_cols=301 Identities=13% Similarity=0.013 Sum_probs=162.2
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
.|+++++-..+-.+++.++.+.+......++.. |...++..+...+..+..+..+.+.-++.+ .-..++|.++-+|++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 478999988888888888887776666555443 444333222223334445566666655544 346889999999984
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 007966 128 -VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (583)
Q Consensus 128 -~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i 206 (583)
...+.+....+..+.+.+.+..+.+..++..++ .+.+. .+.+...+.......-|+|...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i~~~~-------------~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG----LDLYL-------------SLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chHHH-------------HHHHHHHHHHHHHHHcchHHHHHH
Confidence 666677888888888888888888888877764 22221 112233333445556677777665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--c---ccCCCCCCC----CCC-----CCCch-hhhHHH---HHHHHHHHhhhhhH-
Q 007966 207 QAIVTTANVLAMLFVIIAGSYLG--F---KTGWSGYEL----PTG-----YFPFG-VNGMLA---GSATVFFAFIGFDA- 267 (583)
Q Consensus 207 ~~~~~~~~ii~~~~~ii~~~~~~--~---~~~~~~~~~----~~~-----~~~~~-~~~~~~---~~~~~~fa~~G~e~- 267 (583)
..+=+.++++..+.+.+..+... . .+..++... +.+ ..+.. ...+.. +.......+ +.+.
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~ 221 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY-WTNQV 221 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH-hcCHH
Confidence 55555555444333333222210 0 000000000 000 00100 000100 111110111 1110
Q ss_pred HHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHH---hccc----CCC----CCCCChHHHHHHHcchhHHHHHHH
Q 007966 268 VASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV---GLVP----YYE----MDPDTPISSAFASHGMHWASYVIT 336 (583)
Q Consensus 268 ~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~---~~~~----~~~----l~~~~~~~~~~~~~g~~~~~~i~~ 336 (583)
...=.=-.|| +|+.+|++.++.....+.+++..+.-. ...+ ..+ .++++.+....++..++++.-++.
T Consensus 222 ~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~ 300 (407)
T TIGR00813 222 IVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFL 300 (407)
T ss_pred HhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHH
Confidence 0111122355 478889998887766665543332221 1122 111 133444555566666788888888
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007966 337 IGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (583)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 369 (583)
+.++.+..++..+.+.+.+-.+..+--++.+++
T Consensus 301 agilaA~mST~~s~l~a~ss~~~~Di~~~~~~~ 333 (407)
T TIGR00813 301 AAILAAVMSTLSSQLNSASTVFTMDLYKKIIRP 333 (407)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 888888888888888888877766655555543
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.64 E-value=0.00048 Score=75.15 Aligned_cols=300 Identities=14% Similarity=0.118 Sum_probs=153.7
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHH---HHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~i---i~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
.|+++++-..+-.+++.++.+-+......++.. |.. .+.+.. ...+.....+.-+.+++++... =...++.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNA-VTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHH
Confidence 688999888777777777777666665544443 443 221111 1111111223334455555543 3688899999
Q ss_pred hCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 124 ~g~~-~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
+|++ ...+.+....+..+.+.+.+..+.+..++..++ .+... .+.+..++........|+|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i~~~~-------------~iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----ISYET-------------GLLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH-------------HHHHHHHHHHHHHHhccHHH
Confidence 9865 566666666666667777777777777777664 22111 11222233344555667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--c-------ccCCCCCCCCCCCCCchhhhHHHHH-HHHHHHhhhhhHHHhhh
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLG--F-------KTGWSGYELPTGYFPFGVNGMLAGS-ATVFFAFIGFDAVASTA 272 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fa~~G~e~~~~~~ 272 (583)
..+...+-+.++++..+++.+..+... . ....++...+.+............+ ....+...+..-...=.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 766555555555554444333222110 0 0000000001100000011111111 11122222322222222
Q ss_pred hhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH---HhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhh
Q 007966 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (583)
Q Consensus 273 ~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~---~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 349 (583)
=..||+ |+..|+..++.+...++++...+.- ....|. ..++++.+....++..++++.-++.++++.+..++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 225664 6788888888776666655443321 111332 22344555556666677888888888888888888877
Q ss_pred hhcchhHHHHHHHhcCCCc
Q 007966 350 SILPQPRILMAMARDGLLP 368 (583)
Q Consensus 350 ~~~~~sR~l~~~a~dg~lP 368 (583)
.+.+.+-++-.+--++..|
T Consensus 339 ~l~~~ss~~~~Di~~~~~~ 357 (483)
T PRK09442 339 QLLQSSSTIIKDLYLNIRP 357 (483)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 7776666554443333444
No 67
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.63 E-value=0.00048 Score=74.99 Aligned_cols=300 Identities=14% Similarity=0.046 Sum_probs=157.1
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHH-HHHHH---HHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPAL-ALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~-i~~~i---i~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
.|+++++...+-.+++.+|.+.+.......+. .|... ...+. .+.+.....+.-+.+..++.. .-..++|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN-AITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 68899999988888888888877665554433 34431 11111 111111112223334444443 33688999999
Q ss_pred hCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 124 ~g~~-~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
+|++ ...+++....+....+...+..+.+..++..++ .+.+. .+.+..++........|+|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i~~~~-------------~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----LSYLT-------------ALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHH-------------HHHHHHHHHHHHHHhhhHHH
Confidence 9965 456666666666666666667777777766654 22221 11222333455555677887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC------CCCCC---CCCCchh--hhHHHHHH-HHHHHhhhhhHHHh
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG------YELPT---GYFPFGV--NGMLAGSA-TVFFAFIGFDAVAS 270 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~------~~~~~---~~~~~~~--~~~~~~~~-~~~fa~~G~e~~~~ 270 (583)
..+...+-..++++..+++.+..+.. .+++.+ ..+++ ...+.++ ..+...+. ...+...+..-...
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~--~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~ 257 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKA--GGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAV 257 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHH
Confidence 77766665655555544443333221 111100 00000 0111111 11111110 11122223222222
Q ss_pred hhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHh
Q 007966 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGL--VPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLM 348 (583)
Q Consensus 271 ~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~--~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 348 (583)
-.-..||+ |+.+|+..++.+...+++....+.-... ..++..++|..+.....+..++++.-++.+.++.+..++..
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~ 336 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVN 336 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Confidence 33445664 7888999888877666655443332111 12222233445555555666778888888888888888888
Q ss_pred hhhcchhHHHHHHHhcCCCcc
Q 007966 349 GSILPQPRILMAMARDGLLPP 369 (583)
Q Consensus 349 ~~~~~~sR~l~~~a~dg~lP~ 369 (583)
+.+.+.+-.+..+--++++|+
T Consensus 337 s~l~~~ss~~~~Diy~~~~~~ 357 (471)
T TIGR02119 337 SLLLQSSSTIIKDLYLNYIPK 357 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 887777766655544444443
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=98.50 E-value=0.003 Score=67.19 Aligned_cols=228 Identities=16% Similarity=0.064 Sum_probs=120.1
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.+|+ ++++..+.-++..+....+...+.+.....-..++.+.+++.++........+..+.++-- +.....|..||.
T Consensus 7 ~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~ 83 (404)
T PRK11017 7 SARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGE 83 (404)
T ss_pred HHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhch
Confidence 3556 8888776666655544444444433211111226666666665555544555555544432 467788889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i 206 (583)
+-+.+.+...++..+.+.+.+.......+...++ .+. . ...++..++.+.....|.|...++
T Consensus 84 ~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~----~~~-----------~---~~~~i~~~l~~~~~~~G~~~i~~~ 145 (404)
T PRK11017 84 KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG----LDI-----------N---LLIVLSGLLMTVTAYFGISALTIL 145 (404)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CCH-----------H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888777777777666555544443332 000 0 112333344555667888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHH-HHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATV-FFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 207 ~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
+++......+.++...+.... ..+++....+.. +.+..++..++... -+-.++.-..+.++...|+|++.+ .+
T Consensus 146 ~~~~~p~~~~~~~~~~~~~~~--~~~g~~~~~~~~---~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~-~~ 219 (404)
T PRK11017 146 SRIAVPAIALLGGYSVWLAVN--DVGGLDGLKAIV---PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV-LA 219 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccCchhhhhcCC---CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee-eh
Confidence 888777666654443332221 111121111111 11112333333221 222455666778888888765433 55
Q ss_pred HHHHHHHHHH-HHHHHH
Q 007966 286 IGTALSICCA-LYMLVS 301 (583)
Q Consensus 286 ~~~~~~i~~v-lyil~~ 301 (583)
...+..+..+ +++++.
T Consensus 220 ~~lg~~i~~~~~~~~G~ 236 (404)
T PRK11017 220 TMVAFFLGNSLMFIFGA 236 (404)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 5555444333 344443
No 69
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.50 E-value=0.00048 Score=72.58 Aligned_cols=333 Identities=15% Similarity=0.114 Sum_probs=171.3
Q ss_pred HHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHH
Q 007966 57 VAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIG 133 (583)
Q Consensus 57 ~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~ 133 (583)
-++-|+--.|.|+...|..+- +..|.. +.+++++.++..-..+ +-..-..+|+.+...+| .||+.|.+..
T Consensus 9 g~~LFamFFGAGNLIFPp~lG-~~aG~~~~~a~~GF~lTgV~lP~Lg-----via~~~~~~~~~~l~~~-v~~~f~~if~ 81 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLG-QQAGSNWWPAMIGFLLTGVGLPLLG-----VIAVAKSGGGIEDLASR-VGPKFALIFT 81 (427)
T ss_pred HHHHHHHHhCCccccchHHHH-HHhcchHHHHHHHHHHHHHHHHHHH-----HHHHhhcCCCHHHHhcc-cCcHHHHHHH
Confidence 344555568999999998765 444443 4455555554322222 12222223455555544 6677766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCC-CCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007966 134 WALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIP-GLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTT 212 (583)
Q Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~ 212 (583)
......--+. .+..+..+..-...+. |. .+ .......+.+++.+.+..++..+.-|...++.++++.
T Consensus 82 ~~i~l~IGP~-~aiPRtaa~sfe~~i~-----p~------~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP 149 (427)
T PF05525_consen 82 ILIYLSIGPL-FAIPRTAAVSFEMGIA-----PF------FPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTP 149 (427)
T ss_pred HHHHHHHHhc-ccCcchhhhhHHHhhh-----cc------CCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 3333222111 1122222222111111 00 01 1112222457788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC----ch-hhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcC---Cchhh
Q 007966 213 ANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFP----FG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ---RDLPL 284 (583)
Q Consensus 213 ~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~---k~~p~ 284 (583)
+.++.++++++.++..+.... .+.+ +.+.. .+ ..++-+.=..+...|...=..+--....||+| |..-+
T Consensus 150 ~LL~~l~ilii~~i~~p~g~~-~~~~--~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~k~~~~~~~~ 226 (427)
T PF05525_consen 150 ILLILLAILIIKGIFSPIGPP-QAPS--GAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDKKEIKKYTIK 226 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCCc-cccc--hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999888886532221 1111 11111 11 12222211112222222222222223333332 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCC----CCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007966 285 GIGTALSICCALYMLVSIVIVGLVPYYE----MDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (583)
Q Consensus 285 a~~~~~~i~~vlyil~~~~~~~~~~~~~----l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 360 (583)
+-.++.....++|...... +...... .+..+.+..+.+...|+....++.+.+.++++.+..+...+.+..+.+
T Consensus 227 ag~ia~~lL~~IY~gL~~l--Ga~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 227 AGLIAGILLALIYGGLAYL--GATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHHHHHHHHHHH--ccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544432 2222222 122234455666667788889999999999999999998888888776
Q ss_pred HHhcCCCcccccccccccCCchHH-HHHHHHHHHHHHHhhCHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc
Q 007966 361 MARDGLLPPFFSDVNKTTQVPVKS-TIVTGIVAAALAFFMDVSALAG----MVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 361 ~a~dg~lP~~~~k~n~~~g~P~~a-ill~~~l~~il~~~~~~~~l~~----l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
... +.+++. ....++++.++. ...++.+++ +....++....++.+.++.-..+
T Consensus 305 ~~~---------------kisY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~ 362 (427)
T PF05525_consen 305 LFP---------------KISYKVWVIIFTIFSFIIA-NLGLDQIIKISVPILMFIYPVAIVLILLNLFDKFIK 362 (427)
T ss_pred Hhc---------------ccChHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 521 233333 333444444333 334555444 44455666666666665554444
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.43 E-value=0.00042 Score=72.28 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=146.5
Q ss_pred hHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHH-HHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHH
Q 007966 53 IPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGI-ASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWL 131 (583)
Q Consensus 53 ~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l-~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~ 131 (583)
...-++-+.++.+|.|+...-+..+.++||.+-++.+++..+ +.+|..+.---++++... +..-.|-+. .+++....
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~-~~~~a~~~l-~~~~~~~~ 88 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRK-NAVGAFRKL-APKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCC-ChhHHHHHh-ccCccchh
Confidence 344556678888999988888877888888886665665333 445444433333444433 223233222 22232333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH-HHHHccCC---C-hhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH-
Q 007966 132 IGWALILEYTIGGSAVARGIS---PNL-AMLFGSAD---S-LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE- 202 (583)
Q Consensus 132 ~~~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~- 202 (583)
.||.-........+-++.-.+ .++ ....+... . ......+ ...+.+.....-++++.+..++..+|++.
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~lt~~iv~~GV~~G 166 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQ--TISNPGLAVIFHLLFLVLTALIVSRGVKKG 166 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 333322222222222211111 111 11111111 0 1111111 11112222233455556666777889876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCCCCCCCCCch-hhhHHHHHHHHHHHh-hhhhHHHhhhhhhhCcC
Q 007966 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK-TGWSGYELPTGYFPFG-VNGMLAGSATVFFAF-IGFDAVASTAEEVKNPQ 279 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fa~-~G~e~~~~~~~E~knP~ 279 (583)
..|.++++....+++++++++-.+..+.. .+..-.-. +++.... ...+..++.+++|+. .|+-....|++-+++ +
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~-PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFK-PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhc-CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 78888888888888777776655532110 01000000 1111111 344677888999998 499999999999887 6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCC----ChHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHhh
Q 007966 280 RDLPLGIGTALSICCALYMLVSIVIVGL---VPYYEMDPD----TPISSAFASHG-MHWASYVITIGAVTALCSTLMG 349 (583)
Q Consensus 280 k~~p~a~~~~~~i~~vlyil~~~~~~~~---~~~~~l~~~----~~~~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~ 349 (583)
.|+++.......+-...-++.-+.+.-. ...+.-..+ ..+..+|.+++ |..+..++-....++.+++..+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888877666665555544444444322 222211111 13455677775 3334444444555555555544
No 71
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.34 E-value=0.00091 Score=70.03 Aligned_cols=256 Identities=21% Similarity=0.243 Sum_probs=121.9
Q ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 78 REHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAM 157 (583)
Q Consensus 78 ~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 157 (583)
.+.-|....+..+++.++..+.-...++++..- .-+...-.++.+||++++.......+....+......+.+..++.
T Consensus 8 GA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~T--g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~l 85 (358)
T PF01566_consen 8 GAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVT--GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNL 85 (358)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566655555555544444444444444332 235677778888999888877777777666666666666655554
Q ss_pred HHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-
Q 007966 158 LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL---CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTG- 233 (583)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~---~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~- 233 (583)
.++ .|.+ ...++..+...++. ..+.|...++..++..++.+.++ +..+...++-+
T Consensus 86 l~g----~~~~--------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~---~~~~~~~p~~~~ 144 (358)
T PF01566_consen 86 LFG----IPLW--------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFL---IAAFIVHPDWGE 144 (358)
T ss_pred hcC----CCcH--------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH---HHHHhcchhHHH
Confidence 442 1111 11222222222222 34556666665555554433332 22222111110
Q ss_pred -CCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHH--hhhhhhh-Cc------------CCchhhHHHHHHHHHHHHH
Q 007966 234 -WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVA--STAEEVK-NP------------QRDLPLGIGTALSICCALY 297 (583)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~--~~~~E~k-nP------------~k~~p~a~~~~~~i~~vly 297 (583)
......| -.|. ..++...++..-.....++... +...|-+ ++ ++|.-.++..+.++...+.
T Consensus 145 ~~~g~~~P--~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~ 221 (358)
T PF01566_consen 145 VARGLVVP--SIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAIL 221 (358)
T ss_pred HhhhccCC--CCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111101 1111 1222222333323333333221 1111111 11 1222222222222222222
Q ss_pred HHHHHHHHhcccCC-CCCCCChHHHHHHHcch-hHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007966 298 MLVSIVIVGLVPYY-EMDPDTPISSAFASHGM-HWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 298 il~~~~~~~~~~~~-~l~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
+...-.. .+.+ +.++.+...++++..-| ++...++.++.+.+.+++..+...+.++++.+.-
T Consensus 222 i~~A~~l---~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 222 IVAAAVL---YPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHh---cccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 2211111 1222 22333456667777767 7999999999999999999999999988877664
No 72
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.33 E-value=0.00095 Score=70.38 Aligned_cols=333 Identities=14% Similarity=0.090 Sum_probs=170.8
Q ss_pred HHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 54 PHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 54 ~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
+..-++-|+--.|.|+...|...- ++.|.. +.+++++.++..-..+. ++-.. .+|+.....+| .||+.|.
T Consensus 11 l~iG~~LFamFFGAGNLIFPp~LG-~~aG~~~~~a~~GF~iT~VglPlLgi----iava~-~~g~~~~l~~r-v~~~f~~ 83 (439)
T PRK15433 11 IALGFMTFALFVGAGNIIFPPMVG-LQAGEHVWTAAFGFLITAVGLPVLTV----VALAK-VGGGVDSLSTP-IGKVAGV 83 (439)
T ss_pred HHHHHHHHHHHhcCcchhccHHHH-HHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh-cCCCHHHHhhh-cchHHHH
Confidence 334445566668999999998765 444544 44555555543222221 12222 23566666655 5666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~ 210 (583)
+........--+. -+..+..+..-...+ .| .. +.......+.+++++.+..++..+.-|...++.+++
T Consensus 84 ~f~~~i~l~IGP~-~aiPRtaavsfEm~i-----~p-~~-----~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 84 LLATVCYLAVGPL-FATPRTATVSFEVGI-----AP-LT-----GDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HHHHHHHHHHhhc-cccCCccccchhhee-----ec-cC-----CcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 5433222221111 111111111111101 00 01 110111224678888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--CC--chh-hhHHH--HHHHHHHHhhhhhHHHhhhhhhhCcC---C
Q 007966 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FP--FGV-NGMLA--GSATVFFAFIGFDAVASTAEEVKNPQ---R 280 (583)
Q Consensus 211 ~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~--~~~~~~fa~~G~e~~~~~~~E~knP~---k 280 (583)
+.+.++.+.++++.++..+... .... .+.+ .| .++ .++-+ +++...|+..=.++. -....||++ |
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~-~~~~--~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~~~~~k 226 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGS-ISTA--TEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEARLLTR 226 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCCc--chhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHH
Confidence 9999999999988888653221 1100 0111 11 111 22222 333333332222222 222355543 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-C---hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007966 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-T---PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (583)
Q Consensus 281 ~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~-~---~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 356 (583)
..-++-.++.+...++|......=. ......++. + -.....+...|++...++.+.+.++++.+..+...+.++
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa--~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~ 304 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGS--DSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAE 304 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566655444332 222222211 2 223334455678889999999999999999998888887
Q ss_pred HHHHHHhcCCCcccccccccccCCchH-HHHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 357 ILMAMARDGLLPPFFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVS----ALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 357 ~l~~~a~dg~lP~~~~k~n~~~g~P~~-aill~~~l~~il~~~~~~~----~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
.+.+.. | .|++ .....++++.++.-+ .++ ....+....++....++.++++.-+.+
T Consensus 305 ~f~~~~-----~-----------isY~~~v~i~~l~S~~lSn~-G~~~II~~s~PiL~~iYP~~IvLill~l~~~~~~ 365 (439)
T PRK15433 305 FFAQYV-----P-----------LSYRTLVFILGGFSMVVSNL-GLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWH 365 (439)
T ss_pred HHHhhc-----C-----------CcHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 755431 1 2222 233334444433322 234 345555666777777777776654333
No 73
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.30 E-value=0.0033 Score=68.58 Aligned_cols=300 Identities=11% Similarity=0.019 Sum_probs=147.8
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHH----HHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIA----GIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~----~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
.|+++++-..+...++..+..-+......++. .|....+..+.. .+.....+--..++. .-++.=..++|.++-
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~R 114 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEAR 114 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHH
Confidence 68899994444344444443333333333433 455533322222 222222444445555 333445789999999
Q ss_pred hC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhH-
Q 007966 124 VG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK- 201 (583)
Q Consensus 124 ~g-~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk- 201 (583)
+| +....+.+....+..+++++.+..+.+..++..++ .+ ... .+.+....++...-..|.|
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~---~~~-------------~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS---YVT-------------GILIGALIVALYTFLGGLRA 177 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC---HHH-------------HHHHHHHHHHHHHHHcChhH
Confidence 99 88999999999999999999999999888866664 21 111 1122223333444444555
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH---hhhc--cccCCCCC--CCCCCCCCchhhhHHHH---HHHHHHHhhhhhHHH
Q 007966 202 --ESTIAQAIVTTANVLAMLFVIIAG---SYLG--FKTGWSGY--ELPTGYFPFGVNGMLAG---SATVFFAFIGFDAVA 269 (583)
Q Consensus 202 --~~~~i~~~~~~~~ii~~~~~ii~~---~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~fa~~G~e~~~ 269 (583)
+...+|-....+.+..+.+++... +... ..+...+. ..+.. .+......... .......+..-....
T Consensus 178 v~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 256 (493)
T COG0591 178 VVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFD-GALSPIYIISLIAWGTLFLGYFGQPHILP 256 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCccc-ccchHHHHHHHHHHHHHHhhhhcCchhhh
Confidence 444555444443333332222221 1100 00001100 00000 01111111111 111122333333333
Q ss_pred hhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH-----HhcccCC-----CCCCCChHHHHHHHcchhHHHHHHHHHH
Q 007966 270 STAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI-----VGLVPYY-----EMDPDTPISSAFASHGMHWASYVITIGA 339 (583)
Q Consensus 270 ~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~-----~~~~~~~-----~l~~~~~~~~~~~~~g~~~~~~i~~~~~ 339 (583)
..-. .|+++ +.||.+......-.+.+++..+.+ ....... +.+++..+........++|..-+....+
T Consensus 257 r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ai 334 (493)
T COG0591 257 RFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAI 334 (493)
T ss_pred hhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 3333 44443 344333333333333333332222 1111111 1233344555666667788888888888
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007966 340 VTALCSTLMGSILPQPRILMAMARDGLLPP 369 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 369 (583)
+.+..++..+.+...+-.+..+--+++.++
T Consensus 335 laAvmSt~ss~ll~~ss~~t~Diyk~~~~~ 364 (493)
T COG0591 335 LAAVMSTASSQLLVASSAITRDIYKRFLRK 364 (493)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence 888888888888888877777766666664
No 74
>PRK12488 acetate permease; Provisional
Probab=98.28 E-value=0.011 Score=65.48 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=94.3
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhCcCCCchhhhHHHHhC-
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPSAGSAYHYSYICVG- 125 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~-~~l~~~el~s~~p~~GG~y~~~~~~~g- 125 (583)
.|++++|...+...++.++...|......++. .|...++ +.++..+..+ ..+.+++--.+... =-.++|.++-+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 68999999988888888888877665554444 4554332 2233332322 23444544444433 257778888887
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
+....+++....+..+.+...+..+.+..++..++ .+.+. .+.+..++.......-|+|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g----i~~~~-------------~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG----ISYLY-------------AVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH-------------HHHHHHHHHHHHHhccchhHHHH
Confidence 55888888888888888888888888877777664 22211 11222233444445667887777
Q ss_pred HHHHHHHHHHHHHHHH
Q 007966 206 AQAIVTTANVLAMLFV 221 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ 221 (583)
.+.+=+.++++..+++
T Consensus 206 td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 206 VQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555554443
No 75
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.25 E-value=0.00013 Score=77.86 Aligned_cols=298 Identities=18% Similarity=0.113 Sum_probs=137.6
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
.|+++++-..+-.+++.+|.+.+.......+. .|....+..+...+...+..+.++.--++.. .-...+|.++-+|++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRSG-AVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT---SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcccc-hhhhhhhhhhhcCCc
Confidence 58899998877777777887766655444433 4554333222223333334444444444333 336889999999998
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 128 V--AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 128 ~--g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
. ..+.+....+..+.+.+.+..+.+..++..++ .+... .+.+..++.......-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i~~~~-------------~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----IPYNT-------------AILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHH-------------HHHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc----hhhhH-------------HHHHHHHHHHHhhhhhhHhhhhH
Confidence 8 66666666666777888888888888777664 12111 11222223333444556776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---------ccCCC---CCCCCCCCCCc-hhhhHHHHHHHHHHHhhhhhHHHhhh
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGF---------KTGWS---GYELPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTA 272 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~---------~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~fa~~G~e~~~~~~ 272 (583)
...+-+.++++..+.+.+..+.... .+..+ +..++.+.... ........ ...+ ..|.....++.
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~~~p~~~ 222 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSF--WIAL-MLGTFGAPHFW 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS---TTHH-HHSTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHH--HHHH-HhhhccchHHH
Confidence 4444444443333333222221100 00000 11111111000 00101100 0011 12333334444
Q ss_pred hhh---hCcCCchhhHHHHHHHHHHHHHHHH------HHHHHhcccCC----CCCCCChHHHHHHHcchhHHHHHHHHHH
Q 007966 273 EEV---KNPQRDLPLGIGTALSICCALYMLV------SIVIVGLVPYY----EMDPDTPISSAFASHGMHWASYVITIGA 339 (583)
Q Consensus 273 ~E~---knP~k~~p~a~~~~~~i~~vlyil~------~~~~~~~~~~~----~l~~~~~~~~~~~~~g~~~~~~i~~~~~ 339 (583)
.+. ||+ |+.+|++..+.....+++.+. ..++....|+. ..+++..+.....+..++++.-++.+.+
T Consensus 223 qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~ 301 (406)
T PF00474_consen 223 QRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGI 301 (406)
T ss_dssp HHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHH
T ss_pred HHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHH
Confidence 443 443 678888887765554444331 12222222211 1122334555566667788877887888
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhcCCCc
Q 007966 340 VTALCSTLMGSILPQPRILMAMARDGLLP 368 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 368 (583)
+.+..++..+.+.+.+-++..+--++..|
T Consensus 302 ~aA~~ST~~s~l~a~ss~~~~Di~~~~~~ 330 (406)
T PF00474_consen 302 LAAIMSTADSLLLAISSIFSRDIYKPFIK 330 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_pred HHhhhHHHHHHHhhhhhhhhHHhhhcccc
Confidence 88888888887777776665554333333
No 76
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.22 E-value=0.018 Score=63.85 Aligned_cols=298 Identities=14% Similarity=0.081 Sum_probs=144.7
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHhhhCcCCCchhhhHHHHhC-
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASA-FSAFCYAELASRCPSAGSAYHYSYICVG- 125 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~-~~~l~~~el~s~~p~~GG~y~~~~~~~g- 125 (583)
.|++++|...+-..++.++...|.......+. .|...++.. ++..+.. ...+.+++--++... =-..+|.++-++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 68899997766666666776666655544433 455433222 2333333 234445555544433 246667777786
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|....+++....+....+...+..+.+..++..++ .+.+. .+.+..++.......-|+|...+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g----i~~~~-------------~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG----LNYHV-------------AVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHH-------------HHHHHHHHHHHHHHhhhhHHHHH
Confidence 45677777777777777777777777777776664 22211 11223333444555667877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCC-------CCCCC--CCCCCchh-hhHHHHHHHHHHHhhhhhHHHhhhhh-
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWS-------GYELP--TGYFPFGV-NGMLAGSATVFFAFIGFDAVASTAEE- 274 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~-------~~~~~--~~~~~~~~-~~~~~~~~~~~fa~~G~e~~~~~~~E- 274 (583)
.+.+=+.++++..+++.+...... ..++. +..+. ....|.+. .+-...+...+....|.-...++...
T Consensus 206 td~iQ~~im~~g~i~~~~~~~~~~-ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~ 284 (549)
T TIGR02711 206 VQIIKAVLLLFGATFMAFMVMKSV-GFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRF 284 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheee
Confidence 666655555554444333222110 00000 00000 00111110 00111111111111232223333333
Q ss_pred --hhCcCCchhhHHHHHHHHHHHHHHHHHHHH---HhcccCC-CC-C------C--CChHHHHHHHcchhHHHHHHHHHH
Q 007966 275 --VKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYY-EM-D------P--DTPISSAFASHGMHWASYVITIGA 339 (583)
Q Consensus 275 --~knP~k~~p~a~~~~~~i~~vlyil~~~~~---~~~~~~~-~l-~------~--~~~~~~~~~~~g~~~~~~i~~~~~ 339 (583)
.|| .|+.+|+..++.....++|++..+.- ...++++ +. + + +..........++.++.-++....
T Consensus 285 ~taks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~ 363 (549)
T TIGR02711 285 FTVSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVA 363 (549)
T ss_pred eecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHH
Confidence 355 37889999988877766665543221 1122221 11 1 0 111122333445566655666666
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007966 340 VTALCSTLMGSILPQPRILMAMARDGLL 367 (583)
Q Consensus 340 ~~~~~~~~~~~~~~~sR~l~~~a~dg~l 367 (583)
+.+..++..+.+.+.+-.+..+--++++
T Consensus 364 ~AA~mST~~s~l~a~st~i~~Diy~~~~ 391 (549)
T TIGR02711 364 FATILAVVAGLTLAGASAVSHDLYANVI 391 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666666666554444333333
No 77
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.16 E-value=0.02 Score=62.50 Aligned_cols=294 Identities=12% Similarity=0.049 Sum_probs=141.9
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhhhCc----CCCchhhhHHH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP----SAGSAYHYSYI 122 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~-~~~~~l~~~el~s~~p----~~GG~y~~~~~ 122 (583)
.|+++++-..+-..++.++...+.......+. .|....+.. ++..+ .+...+.+++--..+. +.=..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 68899988876666666665555543333333 455432222 12222 2222333443333221 12247899999
Q ss_pred HhCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhh
Q 007966 123 CVGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (583)
Q Consensus 123 ~~g~---~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~g 199 (583)
-+|+ ....+.+....+....+.+.+..+.+..++..++ .+.+. .+.+..++.+.....-|
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g----i~~~~-------------~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG----LDYKT-------------GLLIGALIIVIYTFFGG 175 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccHHH-------------HHHHHHHHHHHHHHhhh
Confidence 9984 3555556555556666677777777777776654 22211 11233344455556667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC----C--CCCC--C-CCCchhhhHHHHHHHHHHHhhhhhHHHh
Q 007966 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG----Y--ELPT--G-YFPFGVNGMLAGSATVFFAFIGFDAVAS 270 (583)
Q Consensus 200 vk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~----~--~~~~--~-~~~~~~~~~~~~~~~~~fa~~G~e~~~~ 270 (583)
+|...+...+=+.++++..+++.+..+.. .+++.+ . .+++ + ..+..+..+... ..|.+ |.-...+
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~--~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~-g~~~~p~ 249 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFN--LGGFGETLSAVAAINPHLLDMFKGASVIAIISL---LAWGL-GYFGQPH 249 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHhhCccccCCCCCCCHHHHHHH---HHHHH-HhccchH
Confidence 77766655554555544433333322221 111100 0 0011 0 111112222221 12211 1111122
Q ss_pred hhhh---hhCcCCchhhHHHHHHHHHHHHHHHHHHH---HHhcccC---CC-CCCCChHHHHHHHcchhHHHHHHHHHHH
Q 007966 271 TAEE---VKNPQRDLPLGIGTALSICCALYMLVSIV---IVGLVPY---YE-MDPDTPISSAFASHGMHWASYVITIGAV 340 (583)
Q Consensus 271 ~~~E---~knP~k~~p~a~~~~~~i~~vlyil~~~~---~~~~~~~---~~-l~~~~~~~~~~~~~g~~~~~~i~~~~~~ 340 (583)
+... .||+ |+..|++..+.....+.++...+. -....+. .+ .++|..+....++..++++.-++.+.++
T Consensus 250 ~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~il 328 (487)
T TIGR02121 250 IIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAIL 328 (487)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHH
Confidence 2222 3553 678888877754433222211111 1111121 11 1233344445555667787778888888
Q ss_pred HHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007966 341 TALCSTLMGSILPQPRILMAMARDGLL 367 (583)
Q Consensus 341 ~~~~~~~~~~~~~~sR~l~~~a~dg~l 367 (583)
.+..++..+.+.+.+-++..+--+++.
T Consensus 329 aA~mST~~s~l~s~ss~~~~Diy~~~~ 355 (487)
T TIGR02121 329 AAIMSTISSQLLVSSSALTEDFYKAFF 355 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888777766555444433
No 78
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.14 E-value=0.0061 Score=62.90 Aligned_cols=344 Identities=15% Similarity=0.074 Sum_probs=170.6
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchH
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~ 128 (583)
..+.+-+|.|+--.|.|+...|...- +..|.. +..++++.++..=..... ..--.+||..+..+| .||+.
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG-~~aG~~~~~A~lGFllTgVglPlLgiI-----a~a~~g~~~~~l~~~-i~~~f 78 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLG-LHAGEHVWPAILGFLLTGVGLPLLGII-----AVALYGGGVESLATR-IGPWF 78 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhh-hhcCccHHHHHHHHHHHHhhHHHHHHH-----HhhccCCCHHHHhhh-ccchH
Confidence 34555567777779999998887643 445554 555556555533222221 111223345555544 56777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007966 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (583)
Q Consensus 129 g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~ 208 (583)
|.+..-.....--+.. +..+....+....+. ............+.+++.+.+..++.+..-|...|+.+
T Consensus 79 g~~f~~~iyLsIGPff-AiPRt~~vsfe~~i~----------p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk 147 (431)
T COG1114 79 GVLFAIAIYLSIGPFF-AIPRTGAVSFEVGIS----------PLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGK 147 (431)
T ss_pred HHHHHHHHHHHhcccc-cCCcccchhHHHhhh----------cccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 6554333322221111 111111111111110 00001122223356788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCC---CCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 209 IVTTANVLAMLFVIIAGSYLGFKTGWSGY---ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 209 ~~~~~~ii~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
+++.++++.++++++..+... ....... ..++++......++.+.=..+.++|...-..+-=...++++ |+..|.
T Consensus 148 ~LTPilLv~l~il~i~~~~~p-~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~ 225 (431)
T COG1114 148 FLTPILLVLLLILVIAAIIPP-AGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKY 225 (431)
T ss_pred HHhHHHHHHHHHHHHHHHhCC-CCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 999999999888877755432 1111111 11111111122344432223344444433333333333443 345555
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcccCCCCCC-CCh---HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007966 286 IGTALSICCALYMLVSIVI--VGLVPYYEMDP-DTP---ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (583)
Q Consensus 286 ~~~~~~i~~vlyil~~~~~--~~~~~~~~l~~-~~~---~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 359 (583)
...+-++.++.-.+.-.++ .+..+.+.... +|+ +.+.-+...|+....++.+.+.++++.+..+.+.+.+..+.
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444433333333 33333332221 222 22334445677778889999999999988887777766643
Q ss_pred HHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALA----GMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 360 ~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~----~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
. ..| |.+-+ ....+..+++.++. ...++.++ ..-...++++..++++.+....++.
T Consensus 306 ~-----~~p----~~SY~-----~~v~if~i~sflva-n~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~ 365 (431)
T COG1114 306 K-----LVP----KLSYK-----TWVIIFTLISFLVA-NLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKN 365 (431)
T ss_pred H-----hcc----cccHH-----HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3 223 11111 12233333433322 23344443 4444556666666666665544444
No 79
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.12 E-value=0.00037 Score=73.56 Aligned_cols=250 Identities=13% Similarity=0.047 Sum_probs=130.8
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
+++-+.+..+.--.+++.|.|++..|.. ....|.. .+....+.+++.......+.+.+...++. -.....++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a--fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA--FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH--HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 4566778888888899999999999975 4666765 55556667777777778888888888875 455566677766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCC-ccc-hhHHHHHHHHHHHHHHHhhhHHHH
Q 007966 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGL-GII-VDPCAAILVLIVTGLLCVGIKEST 204 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~i~~~gvk~~~ 204 (583)
.-........-..... ......-+.+.+........ ...+...+ ++ ... +.+..+.++..+++.. .....+
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~-~~~~~~~~---~~~~~~~ill~~~~~i~pLsl~k--~l~~Lk 152 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLF-LDEEGGSH---YLDRNFLILLVLLFIILPLSLLK--NLDSLK 152 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcc-cccccccc---cccceeEeehHHHHHHHHHHHHH--hhhhHH
Confidence 5321111111110000 00000000111110100000 00000000 11 111 1111222222222222 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCch--hhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcC-Cc
Q 007966 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG--VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RD 281 (583)
Q Consensus 205 ~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~-k~ 281 (583)
. .+..+.+. .+.+++...+........... .....+.. +.+++.++...+++|...+.+...-+|+|||+ |+
T Consensus 153 ~-tS~~s~~~---~~~fv~~vv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 153 Y-TSALSLAS---VVYFVVLVVYKYFQGPCALGR-LSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred H-HHHHHHHH---HHHHHHHHHHHHHhcccccCC-cccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 2 22222222 222222222221221100000 01111211 25788999999999999999999999999998 78
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 007966 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYE 312 (583)
Q Consensus 282 ~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~ 312 (583)
+.+....+...+..+|.+....-...++++.
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 8888999999999999888877766665543
No 80
>PRK09395 actP acetate permease; Provisional
Probab=98.11 E-value=0.029 Score=62.22 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=89.0
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhCcCC--CchhhhHHHH
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPSA--GSAYHYSYIC 123 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~-~~l~~~el~s~~p~~--GG~y~~~~~~ 123 (583)
-.|++++|-..+-.+++.++..-|.......+. .|...++ +.++..+..+ ..+.++ .++.+. =..++|.++-
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~---~~~r~~g~~T~~d~l~~R 141 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIA---ERLRNLGKYTFADVASYR 141 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHH---HHHhhCCCccHHHHHHHH
Confidence 368899998887777777887777665554433 4554332 2223322222 223333 333332 2466677788
Q ss_pred hC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHH
Q 007966 124 VG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (583)
Q Consensus 124 ~g-~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~ 202 (583)
+| +....+++....+..+.+...+..+.+..++..++ .+.+. .+.+..++.......-|+|.
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~-------------~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHV-------------AVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH-------------HHHHHHHHHHHHHhhcchHH
Confidence 88 45888888888888888888887777777766654 22111 11223334444555567887
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007966 203 STIAQAIVTTANVLAMLFV 221 (583)
Q Consensus 203 ~~~i~~~~~~~~ii~~~~~ 221 (583)
..+.+.+=++++++..+++
T Consensus 205 v~~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 205 TTWVQIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666655555555544333
No 81
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.08 E-value=0.03 Score=61.42 Aligned_cols=294 Identities=10% Similarity=0.003 Sum_probs=139.3
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHH-HH--hhh-CcCCCchhhhHHH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYA-EL--ASR-CPSAGSAYHYSYI 122 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~-~~~~l~~~-el--~s~-~p~~GG~y~~~~~ 122 (583)
.|++++|-..+-..++.++...+......++ ..|....+. .++..+. ......+. .+ ... .++.=-.++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-LSGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-HcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 6899999998888888888777765554443 345553221 2222222 11111111 11 111 1223357889999
Q ss_pred HhCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhh
Q 007966 123 CVGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (583)
Q Consensus 123 ~~g~---~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~g 199 (583)
-+|+ ....+.+....+....+.+.+..+.+..++..++ .+... .+.+..++.......-|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~-------------~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYET-------------ALWAGAAATILYTFIGG 179 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH-------------HHHHHHHHHHHHHHhhh
Confidence 9985 3555566666666667777777777777766654 11111 12233344455556667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC----C--CCCC--CCCC-chhhhHHHHHHHHHHHhhhhhHHHh
Q 007966 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG----Y--ELPT--GYFP-FGVNGMLAGSATVFFAFIGFDAVAS 270 (583)
Q Consensus 200 vk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~----~--~~~~--~~~~-~~~~~~~~~~~~~~fa~~G~e~~~~ 270 (583)
+|...+...+=+.++++..+++.+..+.. .+++.+ . ..+. +..+ ..+..+...+ ...+.+.|. .+
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~~--~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~---p~ 253 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVIVIIS--VGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLM-GWGLGYFGQ---PH 253 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHhcCccccCcccCCCHHHHHHHH-HHHHHHcCC---hH
Confidence 77777665555555554443333322221 111100 0 0000 1111 1122122111 111122222 22
Q ss_pred hhhh---hhCcCCchhhHH----HHHHHHHHHHHHHHHHHHHhc--ccCC----CCCCCChHHHHHHHcchhHHHHHHHH
Q 007966 271 TAEE---VKNPQRDLPLGI----GTALSICCALYMLVSIVIVGL--VPYY----EMDPDTPISSAFASHGMHWASYVITI 337 (583)
Q Consensus 271 ~~~E---~knP~k~~p~a~----~~~~~i~~vlyil~~~~~~~~--~~~~----~l~~~~~~~~~~~~~g~~~~~~i~~~ 337 (583)
+... .||+ |++.++. .+.........+++....... .|.. +.+++..+.....+...+++.-++..
T Consensus 254 ~~qR~~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a 332 (502)
T PRK15419 254 ILARFMAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLS 332 (502)
T ss_pred HHHhheecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHH
Confidence 2222 2443 2233332 222222222222222222211 1211 01223344444555566788788888
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007966 338 GAVTALCSTLMGSILPQPRILMAMARDGLL 367 (583)
Q Consensus 338 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 367 (583)
.++.+..++..+.+.+.+-.+..+--++++
T Consensus 333 ~ilAA~mST~~s~l~a~ss~~~~Diy~~~~ 362 (502)
T PRK15419 333 AILAAVMSTLSCQLLVCSSAITEDLYKAFL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888887666555444443
No 82
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.07 E-value=0.033 Score=61.82 Aligned_cols=148 Identities=9% Similarity=-0.024 Sum_probs=90.1
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHH---HHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHh
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALA---LSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i---~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~ 124 (583)
.|++++|-..+-.+++.++...|.......+. .|...+ +.|.++ ....++.+++.-+++.. -..++|.++-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 68999999888888888877766655443333 455422 222222 22244566666666543 36899999999
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 125 GEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 125 g~~-~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
|++ ...+++....+..+.+.+.+..+.+..++..++ .+.+. .+.+..++.......-|+|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g----i~~~~-------------~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE----VDFET-------------GVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHH-------------HHHHHHHHHHHHHHhhhHHHH
Confidence 855 677777777777888888888777777776664 12111 112222334444555677776
Q ss_pred HHHHHHHHHHHHHH
Q 007966 204 TIAQAIVTTANVLA 217 (583)
Q Consensus 204 ~~i~~~~~~~~ii~ 217 (583)
.+...+=+.++++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 66554444444443
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.97 E-value=0.035 Score=59.56 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=52.4
Q ss_pred hhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcC-CC-chhhhHHHHhCchHHHHHHHHHHHHH
Q 007966 63 STIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AG-SAYHYSYICVGEGVAWLIGWALILEY 140 (583)
Q Consensus 63 ~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~-~G-G~y~~~~~~~g~~~g~~~~~~~~~~~ 140 (583)
..+|-|.+.+... +.+.-|...+|..+++.++.. .+-|++.+.-. +| |...-.++.+|++++++......+..
T Consensus 46 a~idpG~i~t~~~-aGA~~Gy~LLW~llls~~~~~----~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~ 120 (439)
T PRK00701 46 GYMDPGNWATNIQ-GGSQFGYTLLWVILLSNLMAM----LLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAI 120 (439)
T ss_pred heecchHHHHHHH-HHHHHCHHHHHHHHHHHHHHH----HHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 3477777765554 345556666555555554444 44455555442 33 78889999999988776544444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007966 141 TIGGSAVARGISPNLAMLF 159 (583)
Q Consensus 141 ~~~~a~~~~~~~~~~~~~~ 159 (583)
..+......+.+..++..+
T Consensus 121 ~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 121 MATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444333
No 84
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.042 Score=58.02 Aligned_cols=90 Identities=12% Similarity=-0.040 Sum_probs=45.0
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
+|.+....--++.-.+-++-|.+....+ +.+.-|....+..++.-++..+.=...++++..- .-|...=.+|.++|+
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~-~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivT--G~~laq~ir~~y~~~ 90 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQ-AGAQYGYSLLWVILLSNLMAYILQELSARLGIVT--GKGLAEAIRERYLPG 90 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHccch
Confidence 3334443333443344567777766543 2233344444444444444443333444444443 224777788888888
Q ss_pred HHHHHHHHHHHHH
Q 007966 128 VAWLIGWALILEY 140 (583)
Q Consensus 128 ~g~~~~~~~~~~~ 140 (583)
+++.......+..
T Consensus 91 ~~~~~~~~~~i~~ 103 (416)
T COG1914 91 LGILLWILAEIAG 103 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 8755544333333
No 85
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.92 E-value=0.046 Score=57.79 Aligned_cols=246 Identities=13% Similarity=0.028 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 007966 84 ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD 163 (583)
Q Consensus 84 ~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 163 (583)
.++.+.+++-++........+..+.++-- ......|..||++-+.+.+...++..+.+.+.+....++.+........
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36666666666555555555555555443 4778899999999888999998998888888888777777776653210
Q ss_pred ChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 007966 164 SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY 243 (583)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~ 243 (583)
+..... ...+++.++.......|.|..++++.+...+..+..+......... .+.....++++
T Consensus 108 -----------~~~~~~--~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~- 170 (386)
T TIGR02358 108 -----------GEESPM--LWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSK---ADLSELWNRAG- 170 (386)
T ss_pred -----------CCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhhcCCCC-
Confidence 000011 1122223345566678999999999888777766655544333221 11111111111
Q ss_pred CCchhhhHHHHHHHHH-HHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHH
Q 007966 244 FPFGVNGMLAGSATVF-FAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSA 322 (583)
Q Consensus 244 ~~~~~~~~~~~~~~~~-fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~ 322 (583)
+ .++..++.... +...+.-..+.++...|+|+| .-++...+..+...+..+.........+. +++. +.
T Consensus 171 -~---~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~~ 239 (386)
T TIGR02358 171 -D---MSFAVAVELVIAMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-SI 239 (386)
T ss_pred -C---ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-HH
Confidence 1 22322221111 112333446778888887654 55666666665555544444444333322 2333 34
Q ss_pred HHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007966 323 FASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 323 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 362 (583)
....+.. .+..+..+++..++.....++++--++.+.
T Consensus 240 ~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 240 LAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred HHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 233344556666655555655555555543
No 86
>PRK10484 putative transporter; Provisional
Probab=97.79 E-value=0.097 Score=57.75 Aligned_cols=298 Identities=13% Similarity=0.046 Sum_probs=138.1
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii-~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.|++++|-..+-.+++.++.+.+......++. .|..... |.. ..+.....++.++.--.+.. .=..++|.++-+|+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA-WEVTAAIALIILALIFLPRYLKSG-ITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHhcCc
Confidence 68999998887777777887777655554433 4555322 222 22222233444433323322 23688899999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccC--CChhhhhhhccCCCCccchhHHHH--HHHHHHHHHHHhhhH
Q 007966 127 GVAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSA--DSLPFFMARQQIPGLGIIVDPCAA--ILVLIVTGLLCVGIK 201 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~i~~~gvk 201 (583)
+...+.+....+.+... .+......+..++..+.-. ...+... .. .+.+ +.++.......-|+|
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~----------~~-~~~~~~~~~i~~~Yt~~GGl~ 182 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGA----------AI-WLLVWLIGIIGAIYAVFGGLK 182 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH----------HH-HHHHHHHHHHHhhhhhhhhHH
Confidence 86666665555544432 2333223333333322100 0011000 00 1111 112234444556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc----cCC-------C-CCCCCCCC-CCchhhhHHHHHHHHHHHhhhhhHH
Q 007966 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFK----TGW-------S-GYELPTGY-FPFGVNGMLAGSATVFFAFIGFDAV 268 (583)
Q Consensus 202 ~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~----~~~-------~-~~~~~~~~-~~~~~~~~~~~~~~~~fa~~G~e~~ 268 (583)
...+...+=+.++++..+++.+..+..... +++ + .++...+. .+..+...+.+.......+.+.+
T Consensus 183 aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (523)
T PRK10484 183 AVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTN-- 260 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCC--
Confidence 776655554555544433332222221100 000 0 01100000 01112222222221111121211
Q ss_pred Hhhhhh---hhCcCCchhhHHHHHHHHHHHHHHHHH---HHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHH
Q 007966 269 ASTAEE---VKNPQRDLPLGIGTALSICCALYMLVS---IVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTA 342 (583)
Q Consensus 269 ~~~~~E---~knP~k~~p~a~~~~~~i~~vlyil~~---~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 342 (583)
.++... .||+ |+..|+..++.....+.+.+.. +......|++..++|+.+.....+..++++.-++.+.++.+
T Consensus 261 q~~~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA 339 (523)
T PRK10484 261 QSIVQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGA 339 (523)
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 222222 3553 6788888877655444433321 12222234322234455555556666677777777777777
Q ss_pred HHHHHhhhhcchhHHHHHHH
Q 007966 343 LCSTLMGSILPQPRILMAMA 362 (583)
Q Consensus 343 ~~~~~~~~~~~~sR~l~~~a 362 (583)
..++..+.+.+.+-++-.+-
T Consensus 340 ~mST~~s~l~s~st~~t~Di 359 (523)
T PRK10484 340 ILSTFNGFLNSASTLFSLDI 359 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78877777777766654443
No 87
>PLN00151 potassium transporter; Provisional
Probab=97.74 E-value=0.0048 Score=68.82 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH--------H
Q 007966 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------L 252 (583)
Q Consensus 181 ~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 252 (583)
+..+++++++.+..+..+|....++ .++.++++=++.+..+|++...+.++... ..+.|.-...+ +
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl---~AlnP~Y~~~Ff~~~~~~gw 347 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVF---RAFNPVYIYYFFKRNSTKAW 347 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhhCHHHHHHHHHhCCCceE
Confidence 3356888888888899999875544 45556666566666667765433322111 12223211111 1
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHH
Q 007966 253 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWAS 332 (583)
Q Consensus 253 ~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 332 (583)
..+.-++.+++|.|+. +++-=.-.+|.+.+|-...+.=+.++.=++.-++..--| ++ ..+|++. ...+++.
T Consensus 348 ~~LGgVvLciTGaEAL--fADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy~----svP~~~~ 418 (852)
T PLN00151 348 SALGGCVLCATGSEAM--FADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFFS----SVPSSLF 418 (852)
T ss_pred EEecceeeeeccchhh--hcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHH----hCCchhH
Confidence 2344567889999954 443333345666665554444444443334444443322 22 2344433 2333333
Q ss_pred H-HHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHHHHH
Q 007966 333 Y-VITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALAG 406 (583)
Q Consensus 333 ~-i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~l~~ 406 (583)
+ ++.+..+.+.+++=+. +.+.=.+..+..+-|.+|+ +.-+++++ .+ .|..-.++...+.++.+.+.+.+.+.+
T Consensus 419 wP~~vlAtlAaIIASQA~-ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~ 497 (852)
T PLN00151 419 WPVFLIANLAALIASRAM-TTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGN 497 (852)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHH
Confidence 3 2222222223332211 1111133344456789993 22333332 13 454444444444444444466777887
Q ss_pred HHHHHH
Q 007966 407 MVSVGT 412 (583)
Q Consensus 407 l~~~~~ 412 (583)
.++++.
T Consensus 498 AYGiAV 503 (852)
T PLN00151 498 AYGIAE 503 (852)
T ss_pred Hhhhhh
Confidence 777654
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.51 E-value=0.22 Score=53.97 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHH--HHHHHHHHHHHHhhCHH---HHH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMDVS---ALA 405 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ai--ll~~~l~~il~~~~~~~---~l~ 405 (583)
+..++....++..+....+..++.+..+..++.+| +.++ ..+.+.. ++.++++..++..+..+ .+.
T Consensus 390 ~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ 460 (485)
T PF02028_consen 390 LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALAIVLLLIGGLDALQSAS 460 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34566677777777778888888999999988775 1122 1233333 23344555555556544 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 406 GMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 406 ~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
.+.+++..+...++..++++.-|+
T Consensus 461 ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 461 IIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777777777777777766543
No 89
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.39 E-value=0.044 Score=61.34 Aligned_cols=216 Identities=13% Similarity=0.142 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH--------H
Q 007966 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------L 252 (583)
Q Consensus 181 ~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 252 (583)
+..+++++++.+..+..+|....+ ..++.++++=++.+.++|++...+.++... ..+.|.....+ +
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg---~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g~ 287 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVS---FLFAPIFLCWFFSLALIGCYNIIKWDKSVF---LAFNPLYIVSFFIRNGRQGW 287 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhh---hhhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhcCHHHHHHHHHhCCCceE
Confidence 335688888888899999987554 445666666666666777765444322111 12223211111 2
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHH
Q 007966 253 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWAS 332 (583)
Q Consensus 253 ~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 332 (583)
..+..++.+.+|.|+. +++-=.-.+|.+.++-...+.=+.++.=++.-++...-| ++ ..||++. ...+++.
T Consensus 288 ~~LG~V~L~iTGaEAL--yADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~~--~~npFf~----~iP~~~~ 358 (779)
T PLN00150 288 ESLGGIVLCMTGTEAM--FADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-ED--VNDPFYR----SLPKPIY 358 (779)
T ss_pred EEecceeeeecchhhh--hccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHHH----hCCchhH
Confidence 2344567889999953 444333445666666554444444443333333333222 22 2345443 2333333
Q ss_pred HHHH-HHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHHHHH
Q 007966 333 YVIT-IGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALAG 406 (583)
Q Consensus 333 ~i~~-~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~l~~ 406 (583)
+.+. +..+.+.++|=+ .+.+.=.+..+.-+-|.+|+ +.-+++++ .+ .|..-.++...+..+.+.+.+.+.+.+
T Consensus 359 ~P~~vlAtlAtIIASQA-~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~ 437 (779)
T PLN00150 359 WPIFVLATCSAMIASQA-MISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGN 437 (779)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHH
Confidence 3222 222222222211 11112234445556799993 22333332 23 444444444443333344456777887
Q ss_pred HHHHHH
Q 007966 407 MVSVGT 412 (583)
Q Consensus 407 l~~~~~ 412 (583)
.++++.
T Consensus 438 AYGiAV 443 (779)
T PLN00150 438 AYGIAV 443 (779)
T ss_pred Hhhhhe
Confidence 777653
No 90
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.34 E-value=0.0057 Score=65.99 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=89.7
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
.+|+-++++.+.+=++..+....+...... ...|.+ ++++.+++.++........+.++.++-- ......|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~--~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALG--VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHH--HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhc
Confidence 478889999998877766665555544332 123333 6666666666554444444555554433 466778888
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHH
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~ 203 (583)
||.+-+.+.+....+..+.+.+......++.+................ ..........+..++.-++.......|.|..
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGN-AIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHHHHCTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhh-hhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999888888888888888888888877788887776532110001100 0000011110112222234445567788888
Q ss_pred HHHHHHHHHHHHHHH
Q 007966 204 TIAQAIVTTANVLAM 218 (583)
Q Consensus 204 ~~i~~~~~~~~ii~~ 218 (583)
.+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (440)
T PF02133_consen 160 RRLAVIAAPILLVVF 174 (440)
T ss_dssp HHHHHCCHHHHHHHH
T ss_pred HhHHhhhhHHHHhhh
Confidence 888877666554443
No 91
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.28 E-value=0.15 Score=55.20 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---------hhhh
Q 007966 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNG 250 (583)
Q Consensus 180 ~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 250 (583)
.+..+++++++.+..++.+|....+++ ++.++++=++.+.++|++...++ +... ....|. +..
T Consensus 131 ~Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~-p~Vl---~A~nP~yai~f~~~~~~~- 202 (534)
T PF02705_consen 131 YVVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQH-PEVL---KALNPYYAIRFFIRNGWI- 202 (534)
T ss_pred eehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhC-HHHH---HHhCHHHHHHHHHHcCCc-
Confidence 333568888888899999998766554 56666666666666676543332 1100 111221 111
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhhhC-cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchh
Q 007966 251 MLAGSATVFFAFIGFDAVASTAEEVKN-PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH 329 (583)
Q Consensus 251 ~~~~~~~~~fa~~G~e~~~~~~~E~kn-P~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 329 (583)
-+..+...+.+.+|.|+. |+ |+-+ .+|.+.++-..-+.-+.++.=++.-++...-| ++ .+||+.. ...+
T Consensus 203 ~~~~LG~V~L~~TGaEAL--yA-DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p-~~--~~npFf~----~~P~ 272 (534)
T PF02705_consen 203 GFFVLGAVFLCVTGAEAL--YA-DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP-EA--VSNPFFL----LIPE 272 (534)
T ss_pred hhhhcchHHHHHhhHHHH--Hh-hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc-ch--hhhHHHH----HhHH
Confidence 233455778999999954 33 4444 34656555544333333332233333333222 11 1344443 3334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHHH
Q 007966 330 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSAL 404 (583)
Q Consensus 330 ~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~l 404 (583)
|+.+.+.+...++..-+.-+.+.+.=-+..+..+-|++|+ +..+++++ .+ .|..-.++...+..+.+.+.+.+.+
T Consensus 273 ~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~l 352 (534)
T PF02705_consen 273 WLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNL 352 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHH
Confidence 4433332222222222111222223344556668899994 22333333 23 4544444444444444445677888
Q ss_pred HHHHHHHHHHHHHHH
Q 007966 405 AGMVSVGTLLAFTMV 419 (583)
Q Consensus 405 ~~l~~~~~~~~~~~~ 419 (583)
.+.+++.......+.
T Consensus 353 a~AYGiAVt~tM~iT 367 (534)
T PF02705_consen 353 AAAYGIAVTGTMLIT 367 (534)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877654444433
No 92
>PLN00149 potassium transporter; Provisional
Probab=97.16 E-value=0.3 Score=55.04 Aligned_cols=217 Identities=14% Similarity=0.115 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH--------HHH
Q 007966 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------LAG 254 (583)
Q Consensus 183 ~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 254 (583)
.+++++++.+..+..+|....+ ..++.++++=++.+..+|++...+.++... ..+.|.-...+ +..
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~f~~~~~~~g~~~ 273 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVY---QALSPYYMYKFLKKTQRGGWMS 273 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHh---hhcCHHHHHHHHHHCCCceeEe
Confidence 4688888888889988887554 445666666666666777765443322111 22333222222 224
Q ss_pred HHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHH
Q 007966 255 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (583)
Q Consensus 255 ~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i 334 (583)
+.-++.+++|.|+. +++-=.-.+|.+.+|-...+.=+.++.=++--++..--|...-+-.+|++.. ..+++.+.
T Consensus 274 LGgV~L~iTG~EAL--yADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P 347 (779)
T PLN00149 274 LGGILLCITGSEAM--FADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWP 347 (779)
T ss_pred ecchhhcccchhhh--hhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHH
Confidence 45678899999953 4443344456666665544444444433444444443332211223454432 33333332
Q ss_pred H-HHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 007966 335 I-TIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALAGMV 408 (583)
Q Consensus 335 ~-~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~l~~l~ 408 (583)
+ .+..+.+.++|=+. +.+.=.+..+.-+-|.+|+ +.-+++++ .+ .|..-.++...+.++.+.+.+.+.+.+.+
T Consensus 348 ~~vlAtlAaIIASQA~-ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AY 426 (779)
T PLN00149 348 VLVIAILAAVVGSQAI-ITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNAS 426 (779)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHh
Confidence 2 22222222222111 1112234444556799993 22333332 23 44444444444433344445677787777
Q ss_pred HHHH
Q 007966 409 SVGT 412 (583)
Q Consensus 409 ~~~~ 412 (583)
+++.
T Consensus 427 GiAV 430 (779)
T PLN00149 427 GLAV 430 (779)
T ss_pred hhhh
Confidence 7654
No 93
>PLN00148 potassium transporter; Provisional
Probab=96.86 E-value=0.54 Score=52.95 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=107.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH--------
Q 007966 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM-------- 251 (583)
Q Consensus 180 ~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 251 (583)
.+..+++++++.+..+..+|....++ .++.++++=++.+..+|++...+.++... ..+.|.....+
T Consensus 196 ~vv~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g 269 (785)
T PLN00148 196 ELVLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKII---HALSPYYIIKFFRVTGKDG 269 (785)
T ss_pred eehhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHh---hhcCHHHHHHHHHhCCCce
Confidence 33356888888888999999875544 45666666666666667765444322211 12233211111
Q ss_pred HHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHH
Q 007966 252 LAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA 331 (583)
Q Consensus 252 ~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 331 (583)
+..+.-++.+++|.|+. +++-=.-.+|.+.++-...+.=+.++.=++.-++..--| ++ ..||++.. ..+++
T Consensus 270 ~~~LGgV~L~iTGaEAL--yADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~~--~~npFf~~----iP~~~ 340 (785)
T PLN00148 270 WISLGGILLSITGTEAM--FADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-PS--IPNSFYDS----IPDPV 340 (785)
T ss_pred EEeecchheeccchhhh--hhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-cc--ccCcHHHh----CCchh
Confidence 22445568899999953 444334445666666554444444443334444443222 22 23454432 23333
Q ss_pred HHHH-HHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHHHH
Q 007966 332 SYVI-TIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSALA 405 (583)
Q Consensus 332 ~~i~-~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~l~ 405 (583)
.+.+ .+..+.+.+++=+. +.+.=.+..+..+-|.+|+ +.-+++++ .+ .|..-.++...+.++.+.+.+.+.+.
T Consensus 341 ~~P~~vlAtlAtIIASQA~-ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la 419 (785)
T PLN00148 341 FWPVFVIATLAAIVGSQAV-ITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIG 419 (785)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHH
Confidence 3322 22222222222111 1112234444556799993 22333333 23 45444444444444444455677777
Q ss_pred HHHHHHH
Q 007966 406 GMVSVGT 412 (583)
Q Consensus 406 ~l~~~~~ 412 (583)
+.++++.
T Consensus 420 ~AYGiAV 426 (785)
T PLN00148 420 NAYGLAC 426 (785)
T ss_pred Hhhhhhe
Confidence 7776553
No 94
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.60 E-value=1.3 Score=46.99 Aligned_cols=293 Identities=15% Similarity=0.131 Sum_probs=157.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 81 SGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLF 159 (583)
Q Consensus 81 ~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g-~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 159 (583)
-|....++|..+..+ .++..+|--+.+-+- -..++...-++ ++.-.+++..-.+...++...+..+.+..++..+
T Consensus 75 dG~~Y~iG~~~Gy~i---~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~ 150 (529)
T COG4147 75 DGLIYSIGWTGGYPI---LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL 150 (529)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 455555666665443 456677776666442 24455554444 5566667777788888888888888888888777
Q ss_pred ccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-----
Q 007966 160 GSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGW----- 234 (583)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~----- 234 (583)
+ .+... .+.++.++.......-|+|...|.|.+=..+.+...++..+........+..
T Consensus 151 g----v~~~v-------------gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~ 213 (529)
T COG4147 151 G----VPYHV-------------GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAE 213 (529)
T ss_pred C----CCcee-------------ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 5 11111 1244455556666777888888877666665555555554444332111110
Q ss_pred ----CCCC-----CCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhh-CcC-CchhhHHHHHHHHHHHHHHHHHHH
Q 007966 235 ----SGYE-----LPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK-NPQ-RDLPLGIGTALSICCALYMLVSIV 303 (583)
Q Consensus 235 ----~~~~-----~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~k-nP~-k~~p~a~~~~~~i~~vlyil~~~~ 303 (583)
+... .+++..+..+.++++ ..+--+.|.-.-.|..-+.- -|. |+.+|...+++..++.+|+.....
T Consensus 214 ~~~~~~~~~~~~~~~pGl~~~~~i~~is---l~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 214 AVTVHPKDDGSDIMEPGLLYKDPIDFIS---LGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred HhhcCcccCcccccCCCCcccCHHHHHH---HHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 011222223333332 22222456665555543321 233 677788999999999999876554
Q ss_pred HHh----cc--cCC------------CCCCC------ChH-HHHHHHcc-hhHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 007966 304 IVG----LV--PYY------------EMDPD------TPI-SSAFASHG-MHWASYVITIGAVTALCSTLMGSILPQPRI 357 (583)
Q Consensus 304 ~~~----~~--~~~------------~l~~~------~~~-~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 357 (583)
-.. +. |.. +.+.+ |.. ..+...++ ++|+..++....+...++.........+-.
T Consensus 291 g~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasa 370 (529)
T COG4147 291 GAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASA 370 (529)
T ss_pred HHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 322 11 111 11111 111 12233345 688877887777777777776666666655
Q ss_pred HHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh
Q 007966 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (583)
Q Consensus 358 l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~ 398 (583)
+..+--++.+-+..++..+- .+-..+..+..+++..+.+.
T Consensus 371 vsHDiY~~vik~~ase~~~v-~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 371 VSHDLYAMVIKKGATEKKEV-RVARIAVVILGVVAILLGIL 410 (529)
T ss_pred HHhHHHHHHhCCCCCcccee-hhHHHHHHHHHHHHHHheec
Confidence 55555555554444443222 33334555555555544433
No 95
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.21 E-value=0.29 Score=54.64 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhh--------H
Q 007966 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNG--------M 251 (583)
Q Consensus 180 ~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 251 (583)
.+..+++++++.+..+.-+|....+ ..++.++++=++.+.++|++.....++... ..+.|.-... -
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT~kvg---~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl---~AlnP~ya~~f~~~~~~~~ 240 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGTAKVG---FTFAPIILVWLLLLAGIGIYNIVKFNPEVL---KALSPYYAVQFFIEYGTVG 240 (688)
T ss_pred eehhHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHHHH---hHhCHHHHHHHHHHCCCce
Confidence 3335688888888899999887554 445666666666666667664433121111 1222321111 1
Q ss_pred HHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHH
Q 007966 252 LAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWA 331 (583)
Q Consensus 252 ~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 331 (583)
+..+..++.+.+|.|+ -|++-=.=.+|.+.++-..-+.-+.++.=++.-++...-| ++. .||++.. ..+|+
T Consensus 241 ~~~LG~V~L~iTGaEA--LyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~~~--~NpFf~~----~P~~~ 311 (688)
T TIGR00794 241 WVSLGGVVLSITGVEA--MFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-EAI--KNPFFLS----IPDWA 311 (688)
T ss_pred eeeccchhheeccHhh--hhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-chh--cCcHHHh----CchHH
Confidence 2245567889999995 3444333345666655553443343333333333333222 221 3555433 33444
Q ss_pred HHHHHHHHHHHHHHHHhhhhc---chhHHHHHHHhcCCCcc-cccccccc--cC--CchHHHHHHHHHHHHHHHhhCHHH
Q 007966 332 SYVITIGAVTALCSTLMGSIL---PQPRILMAMARDGLLPP-FFSDVNKT--TQ--VPVKSTIVTGIVAAALAFFMDVSA 403 (583)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~---~~sR~l~~~a~dg~lP~-~~~k~n~~--~g--~P~~aill~~~l~~il~~~~~~~~ 403 (583)
.+.+ .+++.++++.++.. +.=.+..+..+-|++|+ +..+++++ .+ .|..-.++...+..+.+.+.+.+.
T Consensus 312 ~~p~---~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~ 388 (688)
T TIGR00794 312 LWPL---FIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNN 388 (688)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHH
Confidence 3332 22233333322222 22234455567899993 22333332 23 444433443333333344456777
Q ss_pred HHHHHHHHH
Q 007966 404 LAGMVSVGT 412 (583)
Q Consensus 404 l~~l~~~~~ 412 (583)
+.+.++++.
T Consensus 389 la~AYGiaV 397 (688)
T TIGR00794 389 LGAAYGIAV 397 (688)
T ss_pred HHHHhhhhh
Confidence 777777654
No 96
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.88 E-value=1.3 Score=48.82 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=56.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCCCCCCCCCCch-hhhHHHHHHHHHHHh-hhhhHHHh
Q 007966 194 GLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF-IGFDAVAS 270 (583)
Q Consensus 194 ~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fa~-~G~e~~~~ 270 (583)
....+|+|...|+......+.+++++++.+-++.... ..+...+..+ ++.... ..-+..++..++|+. .|.-....
T Consensus 193 ~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~p-d~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 193 FGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTP-DWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB--TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecC-CcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 3346888888887766555444444444333332110 0111111111 121111 223466888889987 48888888
Q ss_pred hhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 007966 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI 304 (583)
Q Consensus 271 ~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~ 304 (583)
+++-.|+ ++|++|........-.+..++..+++
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~i 304 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVI 304 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHH
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHHHHH
Confidence 9988876 56788866666655555544444333
No 97
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.81 E-value=0.94 Score=49.87 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhH--------H
Q 007966 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------L 252 (583)
Q Consensus 181 ~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 252 (583)
+..+++++++.+..+.-+|....+ ..++.++++=++.+.++|++...++ +.. -....|.-...+ +
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG---~~FgPIm~vWF~~i~~~Gi~~I~~~-P~V---l~AlnP~ya~~f~~~~~~~gf 215 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVG---KLFAPIMLTWFLTLAVLGLRSIIAN-PEV---LHALNPMWAVHFFLEYKTVSF 215 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHhcC-HHH---HhHhCHHHHHHHHHhCCCceE
Confidence 335688888888888888887554 4556666666666666676643332 111 012223211112 2
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHH
Q 007966 253 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWAS 332 (583)
Q Consensus 253 ~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 332 (583)
..+..++.+.+|.|+ -|++-=.=.+|.+.++-.....=+.++.=++.-++...-| +. ..||+... ..+|+.
T Consensus 216 ~~LG~V~L~vTGaEA--LYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~~--~~NpFf~~----~P~~~~ 286 (622)
T PRK10745 216 FALGAVVLAITGVEA--LYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-EA--IKNPFFLL----APDWAL 286 (622)
T ss_pred EEecceeeeccchHH--HhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc-hh--hcCcHHHh----CChhHH
Confidence 244567888999994 4444444455666666554444344333333333333222 22 24555433 334443
Q ss_pred HHHHHHHHHHHHHHHhhhhc---chhHHHHHHHhcCCCcc-cccccccc--cCCchHHH--HHHHHHHHHHHHhhCHHHH
Q 007966 333 YVITIGAVTALCSTLMGSIL---PQPRILMAMARDGLLPP-FFSDVNKT--TQVPVKST--IVTGIVAAALAFFMDVSAL 404 (583)
Q Consensus 333 ~i~~~~~~~~~~~~~~~~~~---~~sR~l~~~a~dg~lP~-~~~k~n~~--~g~P~~ai--ll~~~l~~il~~~~~~~~l 404 (583)
+.+ .+++.++++.++.. +.=.+..+-.+-|++|+ +..+++++ .+.-+..+ ++...+..+.+.+.+.+.+
T Consensus 287 ~p~---viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~L 363 (622)
T PRK10745 287 IPL---LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNL 363 (622)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHH
Confidence 322 22333333322222 22234455567899993 22333322 24444333 3333333323333566777
Q ss_pred HHHHHHHH
Q 007966 405 AGMVSVGT 412 (583)
Q Consensus 405 ~~l~~~~~ 412 (583)
.+.+++..
T Consensus 364 a~AYGiAV 371 (622)
T PRK10745 364 AAAYGIAV 371 (622)
T ss_pred HHHhhhhh
Confidence 77777663
No 98
>PRK09950 putative transporter; Provisional
Probab=95.52 E-value=4.7 Score=43.92 Aligned_cols=91 Identities=8% Similarity=0.052 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHH--HHHHHHHHHHHHhhC-HH---HH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMD-VS---AL 404 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ai--ll~~~l~~il~~~~~-~~---~l 404 (583)
+..+..+..++..+....++.++.+.++..++.+|.=++ .|++ ...+.. +..++++..++..+. .+ ..
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~--~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~ 473 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPD--RGLRLFWCVVITLIPLSILFTGASLDTMKTT 473 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCC--cchhHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 456666777777777888888999999888877654221 1111 112222 233444454555554 55 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 007966 405 AGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 405 ~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
..+.+++..+...+++.+.++--
T Consensus 474 ~ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 474 VVLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666544
No 99
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.41 E-value=3.8 Score=42.12 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=144.0
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhCcCC------CchhhhH
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPSA------GSAYHYS 120 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~-~~l~~~el~s~~p~~------GG~y~~~ 120 (583)
+|+++..-+.+-..++=++...|...+..++. .=++|++-+.+..| ..+...-++..+.+- =-..++.
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk-----~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYK-----YGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHH-----hchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHH
Confidence 68898887776666665665555433222211 22467777777777 445666666665431 1233444
Q ss_pred HHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhh
Q 007966 121 YIC-VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (583)
Q Consensus 121 ~~~-~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~g 199 (583)
+.- -++...++++....+.......++-.+.+..+....+- +... .+.+..+.+...-...|
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi----dY~t-------------gL~ifa~~V~iYt~fGG 175 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI----DYTT-------------GLLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC----Cchh-------------hHHHHHHHHHHHHhhcc
Confidence 433 46778888999999988888888887777777766641 1110 12223333444455567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cc---CCCCCCC----CCC----CCCchhhhHHHHHHHHHHHhhhhh
Q 007966 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGF--KT---GWSGYEL----PTG----YFPFGVNGMLAGSATVFFAFIGFD 266 (583)
Q Consensus 200 vk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~--~~---~~~~~~~----~~~----~~~~~~~~~~~~~~~~~fa~~G~e 266 (583)
.|.+.---.+=+.++++..+++.+..++... ++ ..++.++ |++ ..+....+++ ....+...|.-
T Consensus 176 FRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfw---ilv~~gvlglP 252 (473)
T COG4145 176 FRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFW---ILVCFGVLGLP 252 (473)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHH---HHHHHHHhcCc
Confidence 7766554455566666655554444333211 00 0111111 111 1111112222 12344445555
Q ss_pred HHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH--Hh-cccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHH
Q 007966 267 AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI--VG-LVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTAL 343 (583)
Q Consensus 267 ~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~--~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~ 343 (583)
-...-.-..|| +|.+.++|+++..+++++-+.+-.+- +- ++|+.. +.|..+....-+...|...-++......+.
T Consensus 253 ~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt-~~D~Vip~lalkvlpp~~agifl~apmaAi 330 (473)
T COG4145 253 HTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT-VVDLVIPTLALKVLPPFAAGIFLAAPMAAI 330 (473)
T ss_pred HHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC-ccchhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44444445677 57899999999998887755444332 11 233333 234334444444444544444444444444
Q ss_pred HHHHhhhh
Q 007966 344 CSTLMGSI 351 (583)
Q Consensus 344 ~~~~~~~~ 351 (583)
.+++.+.+
T Consensus 331 MSTIds~L 338 (473)
T COG4145 331 MSTINSQL 338 (473)
T ss_pred HHHHHHHH
Confidence 45544433
No 100
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=4.9 Score=43.44 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=58.7
Q ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcC-CCcccccccccccCCchHHHHHHHHHHHHHHHhhC
Q 007966 322 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG-LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD 400 (583)
Q Consensus 322 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~ 400 (583)
+|+....-.+..+..+..++-.+.-..++.++.+-++..++..+ .=|+.. .-+.--++.++++..++..+.
T Consensus 394 lf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~--------~r~~W~v~~~~ia~~lL~~gg 465 (537)
T COG1292 394 LFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRW--------VRVFWGVLIGLIAAVLLLIGG 465 (537)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHH--------HHHHHHHHHHHHHHHHHHhCC
Confidence 34444333345566666666666667788899999998888655 222211 112223445566666666666
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 401 VS---ALAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 401 ~~---~l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
+. ...-+.+....+..++++.++++--++
T Consensus 466 l~aLqt~~ii~alPF~~vll~~~~sl~k~l~~ 497 (537)
T COG1292 466 LEALQTAAIITALPFSLVLLVMMFSLIKDLKQ 497 (537)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHh
Confidence 44 445555666667777777777766544
No 101
>PRK09928 choline transport protein BetT; Provisional
Probab=95.30 E-value=6.5 Score=44.19 Aligned_cols=94 Identities=10% Similarity=-0.062 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHH---HHHH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSA---LAGM 407 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~---l~~l 407 (583)
+..+..+..++..+....++.++.+-++-.++.+|.-|+. |++...-+.=-++.++++..++..+.++. ...+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~----~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS----DAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC----CCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4455555666666667778888899998888876543211 11101111112334555555666666554 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 007966 408 VSVGTLLAFTMVAISVLILRY 428 (583)
Q Consensus 408 ~~~~~~~~~~~~~~a~i~lr~ 428 (583)
.+++..+..++++.++++--+
T Consensus 483 ~alPf~~I~ll~~~sl~k~l~ 503 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYKSLK 503 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677777666543
No 102
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=95.28 E-value=4.8 Score=42.53 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966 319 ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (583)
Q Consensus 319 ~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 361 (583)
..+..+..-|++..+++.++.+.+.+++..+..++..-+..+.
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344555667888899999999999999888777655554443
No 103
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.15 E-value=0.14 Score=51.53 Aligned_cols=234 Identities=10% Similarity=0.079 Sum_probs=112.2
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCc-CCCc-------hh
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCP-SAGS-------AY 117 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p-~~GG-------~y 117 (583)
+-+.+++.++...=..+.+=|. |...-.++...||...+.+.+..+.+..-..-...| ..|. +..| .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGM--FivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGM--FIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhhee--eEeccceeeeEcchhHHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhH
Confidence 3456799999887766666553 433333456778876666555433322211111111 1221 1122 23
Q ss_pred hhHHHH-hCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHH
Q 007966 118 HYSYIC-VGEGVA-WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGL 195 (583)
Q Consensus 118 ~~~~~~-~g~~~g-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 195 (583)
.=+.+. ++|.+| ..+..+-++.-..++..+....++.+..-|.+.. +...+|. +++-+.++-+.
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s----------vd~~sWm--~i~~a~LLpc~-- 253 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS----------VDKASWM--MITSASLLPCS-- 253 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC----------ccccchh--hhhhHHHhhhH--
Confidence 333333 666665 4455555555555555555545555554442111 0111111 11222222222
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhh
Q 007966 196 LCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (583)
Q Consensus 196 ~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~ 275 (583)
-++..|..+++.-+.+...+++=++++...+.....-+|+...-.-+ ...+-..+.+++|+|+----..++-+.+
T Consensus 254 FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsid-----i~~fPisvG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 254 FLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSID-----INTFPISVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEE-----cccCceEEEEEEEeeeceeecccccccc
Confidence 23567778888777777777766555555443211111211110000 0011112224456666555567778899
Q ss_pred hCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 007966 276 KNPQRDLPLGIGTALSICCALYMLVSIV 303 (583)
Q Consensus 276 knP~k~~p~a~~~~~~i~~vlyil~~~~ 303 (583)
|||.+ +-.-+-|+=+..+++=.+....
T Consensus 329 ~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 329 KNPSQ-FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred CChhH-heeeeehHHHHHHHHHHHHHHh
Confidence 99975 5555666666666654444433
No 104
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.79 E-value=5.8 Score=40.98 Aligned_cols=96 Identities=15% Similarity=-0.069 Sum_probs=63.0
Q ss_pred ccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchH
Q 007966 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (583)
Q Consensus 50 ~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~ 128 (583)
..+.+.++..-+.++.|.|-...|.. + ..-|+. ++++.+++.++.-..==..+-+.|.-.+.-+.-.-+++.+||+.
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~-a-a~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPIL-A-AQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHH-H-HHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHH
Confidence 36778889999999999998887754 2 445666 66655556666554322233333332233368888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007966 129 AWLIGWALILEYTIGGSAV 147 (583)
Q Consensus 129 g~~~~~~~~~~~~~~~a~~ 147 (583)
+.+..+..++..+...+..
T Consensus 129 ~~lf~~f~~~~lilV~avF 147 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVF 147 (376)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887776666555544433
No 105
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.92 E-value=6.5 Score=41.86 Aligned_cols=169 Identities=11% Similarity=0.008 Sum_probs=74.8
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHH
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~ 122 (583)
+.+|..|||+-+..=.+..++.+-+...++ +.+ -|.. .+...+++=++.......-++.|+.|.- +.-.-.|.
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s-~l~-lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhI--sFpv~sR~ 126 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGS-ALE-LGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHI--SFPVLSRS 126 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhh-HHh-ccCCHHHHHHHHHHHHHHHHHHHHHccCCCccccc--ceeeeeee
Confidence 357889999998886666666665554444 222 3433 5555555544444433333344433321 11112223
Q ss_pred HhCch---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHH
Q 007966 123 CVGEG---VAWLIGWALILEYTIGGSAVARGIS----PNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGL 195 (583)
Q Consensus 123 ~~g~~---~g~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 195 (583)
.||-. ++-+.-... .+++-..++.-.+ ..+...+.++...|..+.. +..+. -..++..+++++.+.
T Consensus 127 sFGiygS~~pIi~R~vm---a~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~---~~~tt-~e~i~FfIFwv~s~~ 199 (572)
T KOG2466|consen 127 SFGIYGSLWPIINRVVM---ACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGK---PGTTT-YEFIGFFIFWVASLP 199 (572)
T ss_pred ehhhhHhHHHHHHHHHH---HHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCC---CCCch-HHHHHHHHHHHHhhh
Confidence 33322 222221111 1111122222222 2333444444444444331 11111 124566677766655
Q ss_pred H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 196 L-CVGIKESTIAQAIVTTANVLAMLFVIIAG 225 (583)
Q Consensus 196 ~-~~gvk~~~~i~~~~~~~~ii~~~~~ii~~ 225 (583)
. ..+.....++...-..+.....+.+.+..
T Consensus 200 ~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~ 230 (572)
T KOG2466|consen 200 FYWFPPYKIRHLFTWKAVLTPFAAFGFLIWL 230 (572)
T ss_pred eeeccHHHhhhHHHHHHhhhHHHHHHHHHHH
Confidence 4 45555566655554444444433333333
No 106
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=93.77 E-value=12 Score=40.73 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHH--HHHHHHHHHHHHhhCHH---HHH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMDVS---ALA 405 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ai--ll~~~l~~il~~~~~~~---~l~ 405 (583)
+..+..+..++..+....+..++.+.++..++.+|.=++ .|++ ...+.. ++.++++..++..+.++ ...
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~--~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~s 476 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPP--LLVRIGWSILVGIIGIVLLALGGLKPIQTAI 476 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCC--cchhhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 445666666666677778888899999988887654221 1221 222222 23344555555555555 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 406 GMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 406 ~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
.+.+.+..+...+++.++++--++
T Consensus 477 ii~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 477 IAGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666667777776655433
No 107
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.24 E-value=13 Score=40.44 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=54.5
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHH----
Q 007966 178 GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLA---- 253 (583)
Q Consensus 178 ~~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 253 (583)
+.++..++++++..+..+..+|....++ +++.++++=++.+.+.|+.....+. .. -....|.-...++.
T Consensus 145 ~~~Vvpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p-~I---L~AiNP~yAi~fl~~~~~ 217 (627)
T COG3158 145 DPYVVPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDP-EI---LRAINPYYAVHFLLEEGF 217 (627)
T ss_pred cCccHHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCH-HH---HHHhChHHHHHHHHhCCc
Confidence 3444457888888888999888875554 4567777666777777776433221 10 01122221111111
Q ss_pred ----HHHHHHHHhhhhhHHHhhhhhhhC-cCCchhhH
Q 007966 254 ----GSATVFFAFIGFDAVASTAEEVKN-PQRDLPLG 285 (583)
Q Consensus 254 ----~~~~~~fa~~G~e~~~~~~~E~kn-P~k~~p~a 285 (583)
.+...+.+.+|.|+- |+ |+-+ -+|.+.+|
T Consensus 218 ~gf~vLGaVfLavTGaEAL--YA-DmGHfGr~pI~~A 251 (627)
T COG3158 218 VGFFVLGAVFLAVTGAEAL--YA-DMGHFGRKPIRVA 251 (627)
T ss_pred eEEEEeeeeeeeeccHHHH--Hh-hccccCCccHHHH
Confidence 233567888999953 33 4443 34555444
No 108
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.99 E-value=25 Score=39.54 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=53.8
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHhhhCcCCCchhhhHH-HHhCchHH
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSAFCYAELASRCPSAGSAYHYSY-ICVGEGVA 129 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii-~~l~~~~~~l~~~el~s~~p~~GG~y~~~~-~~~g~~~g 129 (583)
+..|-++-.++-.+|.|++..-.....++||.+..+.+++ ..++.+|..++-.-+|.-.. .|....|=+ .=.-+..|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~-~g~v~~wrri~Pif~GvG 117 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTS-QGPVSVWRRICPIFKGVG 117 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhc-CChHHHHHHhChHhcCcc
Confidence 7788888899999999999977777889999775555555 44466665554444444333 356666642 11224455
Q ss_pred HHHHHHHHH
Q 007966 130 WLIGWALIL 138 (583)
Q Consensus 130 ~~~~~~~~~ 138 (583)
+...+.-+.
T Consensus 118 ~a~v~~~~~ 126 (629)
T KOG3660|consen 118 WASVVISAL 126 (629)
T ss_pred HHHHHHHHH
Confidence 554443333
No 109
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=89.05 E-value=5.8 Score=41.31 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=39.2
Q ss_pred HhcCCCcccccccccccCCchHHHHHHHHHHHHHHH--h-h---------------CHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF--F-M---------------DVSALAGMVSVGTLLAFTMVAISV 423 (583)
Q Consensus 362 a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~--~-~---------------~~~~l~~l~~~~~~~~~~~~~~a~ 423 (583)
=+|-..|+.++|..++.+.|+...+...+...++.. + + +-+.+..+..............+.
T Consensus 103 y~~yawP~~lgkl~~~~~l~i~~ai~~~l~l~l~~~~~~~~~l~~~~~~~~Fy~~~p~~~~~~if~~~~~~a~~~l~~gv 182 (389)
T PRK15033 103 YQEYAWPAALGALYRRNGLTLSLALAVGLALFLLLAVALKGSLLHAPLAGNFYAIFPHNLLALMFGSVFLFAILALGIGV 182 (389)
T ss_pred HHHccCcHHHHHhhccCccHHHHHHHHHHHHHHHHHHHhcccccCCCCCcceeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778899999877768887766544433333221 1 1 122455555555555555555666
Q ss_pred HHHhcc
Q 007966 424 LILRYV 429 (583)
Q Consensus 424 i~lr~~ 429 (583)
.++++.
T Consensus 183 ~rfWr~ 188 (389)
T PRK15033 183 RRFWRD 188 (389)
T ss_pred HHHHHH
Confidence 666554
No 110
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=87.37 E-value=46 Score=35.86 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHH--HHHHHHHHHHHHhhC-HH---HH
Q 007966 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMD-VS---AL 404 (583)
Q Consensus 331 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ai--ll~~~l~~il~~~~~-~~---~l 404 (583)
+..+.....++..+....+..++.+.++..++.++.-++. +++ ...+.. +..++++..++..+. ++ .+
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~----ep~--~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~ 427 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE----EPP--KWVRVFWAVAIGLIALVLLFSGGSLAALQTT 427 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC----CCC--cccchHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4556666777777777888888999998878554332210 111 112222 223455555555555 55 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 007966 405 AGMVSVGTLLAFTMVAISVLILR 427 (583)
Q Consensus 405 ~~l~~~~~~~~~~~~~~a~i~lr 427 (583)
..+.+++..+...+++.++++--
T Consensus 428 ~ii~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 428 AIIAALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666543
No 111
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=83.82 E-value=8.8 Score=39.79 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 007966 534 LTLCGIGGALLLCGLIVLTSI 554 (583)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~~ 554 (583)
-.+.++|++.+++|...+.+.
T Consensus 255 klLG~~GGi~Ll~G~~~l~~l 275 (372)
T TIGR02484 255 VILGLVGGVAMLAGAAGLSGL 275 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887774443
No 112
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=76.05 E-value=1.2e+02 Score=33.64 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=58.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCC-chhhhHHHHHH
Q 007966 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLG-FKTGWSGYELPTGYFP-FGVNGMLAGSA 256 (583)
Q Consensus 179 ~~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (583)
+...++.+++.+++.+...+|.|..+++.-+...+-.+++.++.+-++-.. .+++.....+ +.+.. .....+.-+..
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~-~~~~kl~~~~vW~dAAt 330 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLT-PDIEKLKEPSVWIDAAT 330 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheec-ccHHHHhhHHHHHHHHH
Confidence 334455666666677778899999999754444443322222223232110 0111111010 11111 11233455666
Q ss_pred HHHHHh-hhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 007966 257 TVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVI 304 (583)
Q Consensus 257 ~~~fa~-~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~ 304 (583)
.++++. .|+.....+++-.|- +.|.-|=.+...++-.+.+++..+..
T Consensus 331 qiffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfvi 378 (629)
T KOG3659|consen 331 QIFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVI 378 (629)
T ss_pred HHHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 777775 588877777776553 33343333333334444444444443
No 113
>PRK15015 carbon starvation protein A; Provisional
Probab=71.35 E-value=1.8e+02 Score=32.73 Aligned_cols=96 Identities=14% Similarity=-0.046 Sum_probs=57.4
Q ss_pred cChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHH
Q 007966 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (583)
Q Consensus 51 l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g 129 (583)
-+.+-++.--|+++.|.|-...|...+ +-|+. ..++.+++.++.-..==..+-+.|.-.+.-+.-.-+++..|++.+
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa--~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~ 160 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAA--QMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG 160 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHH--HHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHH
Confidence 345677888999999999988886532 34555 444344455544332112222222222233677889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007966 130 WLIGWALILEYTIGGSAVA 148 (583)
Q Consensus 130 ~~~~~~~~~~~~~~~a~~~ 148 (583)
.+.....++.-+...+..+
T Consensus 161 ~lfli~i~~iliiviAvfa 179 (701)
T PRK15015 161 VIALVACFMIMVIILAVLA 179 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8776666555555444433
No 114
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=69.02 E-value=1.9e+02 Score=31.87 Aligned_cols=102 Identities=14% Similarity=0.004 Sum_probs=65.4
Q ss_pred cChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHH
Q 007966 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (583)
Q Consensus 51 l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~ 130 (583)
.+.+.++..-|.++.|.|-...|.- +.+.|-+...++.+++++++-..==...-+.|.=.+.-+.-+-+++.+|++.+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 6778889999999999998888864 324332556665666777665532222223332223336788899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007966 131 LIGWALILEYTIGGSAVARGISP 153 (583)
Q Consensus 131 ~~~~~~~~~~~~~~a~~~~~~~~ 153 (583)
++....++--+...+..+...+.
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766665555554444443333
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=58.97 E-value=1.1e+02 Score=33.23 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccc
Q 007966 316 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFF 371 (583)
Q Consensus 316 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~ 371 (583)
...+.+..+...|++..+++.+..++..++.+.+.+......+...-.+...|+++
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~ 175 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34567777777788999999999999999999998888887776665543344444
No 116
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=52.04 E-value=2.9e+02 Score=28.47 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCC
Q 007966 287 GTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGL 366 (583)
Q Consensus 287 ~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~ 366 (583)
..+.+++++++.+......-.-.+-+ +....+..+..-++++..+..+.+.+.+++.....+.+++-.+.++
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f~---a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~----- 110 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKFN---ATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEM----- 110 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-----
Confidence 45566667776666655543322111 2234556777778889999999999999999988887777665443
Q ss_pred CcccccccccccCCchH-HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Q 007966 367 LPPFFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMV 419 (583)
Q Consensus 367 lP~~~~k~n~~~g~P~~-aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~ 419 (583)
+|.|.. +.+....+..+...+.+++.+..+++...++-+.+.
T Consensus 111 -----------~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l 153 (349)
T COG3949 111 -----------FGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIIL 153 (349)
T ss_pred -----------hCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHH
Confidence 367765 323333344444555667877777776665544443
No 117
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.98 E-value=18 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 007966 527 SLPRLLQLTLCGIGGALLLCGLIVLTSINQDEA 559 (583)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 559 (583)
..+......+++++|+++.++++.|+.+|.++|
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555566666777777777777777776544
No 118
>PF14150 YesK: YesK-like protein
Probab=46.48 E-value=1.1e+02 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.016 Sum_probs=29.8
Q ss_pred hHHHHHHhhHhHhhhcccccCCchHHHHHHHHHHHHHHHHHHHHh
Q 007966 507 WTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVL 551 (583)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (583)
|.+.+....+++...+.+....++|-+.-+.+++..+++...+-+
T Consensus 30 ~il~~ililis~~~v~~S~f~vGGweGmg~g~~~~~v~ig~~ig~ 74 (81)
T PF14150_consen 30 IILPLILILISLLTVLISIFLVGGWEGMGLGVIAFFVFIGSIIGY 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHheEcchhhhhHHHHHHHHHHHHHHHH
Confidence 444545555566666667677788888888888877666555443
No 119
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=44.03 E-value=3.3e+02 Score=30.44 Aligned_cols=40 Identities=10% Similarity=-0.070 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc
Q 007966 329 HWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (583)
Q Consensus 329 ~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 368 (583)
+.+.-++..+++-+.++++.+.+.+.+-+..++--+...+
T Consensus 331 pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ik~~~k 370 (585)
T KOG2349|consen 331 PGLRGLFIAVVFSAALSSLSSIFNSLSTVFLEDYIKPLRK 370 (585)
T ss_pred CCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC
Confidence 4455577778888888888888888888887775544433
No 120
>PF14256 YwiC: YwiC-like protein
Probab=43.58 E-value=2.2e+02 Score=24.83 Aligned_cols=47 Identities=13% Similarity=-0.051 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007966 384 STIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (583)
Q Consensus 384 aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~ 430 (583)
+-+.+.++..++.......+.-.....+.+..|....-....+|.|+
T Consensus 6 GAW~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 6 GAWAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555555555555555544556666777777776666666554
No 121
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=39.68 E-value=87 Score=23.04 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHH
Q 007966 253 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYML 299 (583)
Q Consensus 253 ~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil 299 (583)
..+-...|++.|..+-.+.-+|.++.+ |...+.+.++.+++++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHH
Confidence 445567899999999999988887532 33444444444444333
No 122
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.29 E-value=36 Score=24.07 Aligned_cols=23 Identities=4% Similarity=0.158 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 007966 536 LCGIGGALLLCGLIVLTSINQDE 558 (583)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~~~ 558 (583)
+..+...++++|+++|.++++++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccch
Confidence 34444467788888888887753
No 123
>PRK11383 hypothetical protein; Provisional
Probab=32.41 E-value=3.6e+02 Score=23.95 Aligned_cols=50 Identities=16% Similarity=0.014 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCC
Q 007966 384 STIVTGIVAAALAFFMDVSALAGMVS-VGTLLAFTMVAISVLILRYVPPDE 433 (583)
Q Consensus 384 aill~~~l~~il~~~~~~~~l~~l~~-~~~~~~~~~~~~a~i~lr~~~~~~ 433 (583)
.-++..++++.+..++-.|.=.+++- ..+.+++.+...+.+.+-|+-+|.
T Consensus 78 ~cw~a~l~~i~LL~iGLwNA~l~lsEKGfY~~af~lsLFgai~vQKn~RD~ 128 (145)
T PRK11383 78 TCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44555666666666665554232222 334566666666777777766664
No 124
>COG4025 Predicted membrane protein [Function unknown]
Probab=31.41 E-value=3.9e+02 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.5
Q ss_pred chhHHHHHHHhcCCCc
Q 007966 353 PQPRILMAMARDGLLP 368 (583)
Q Consensus 353 ~~sR~l~~~a~dg~lP 368 (583)
..-|-..+++||+.+|
T Consensus 55 ~~ve~v~e~~re~~i~ 70 (284)
T COG4025 55 SKVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 3456778999999887
No 125
>PRK11380 hypothetical protein; Provisional
Probab=29.26 E-value=47 Score=33.93 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHhhhcccccchhhHHHHHHhhHhHhh-hcccccCCchHHHHHHHHHHHHHHHHHH
Q 007966 491 QVQDILNEENRRTVAGWTIMFTCIGVFVLT-YAASDLSLPRLLQLTLCGIGGALLLCGL 548 (583)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (583)
+++-+.+++.+....-|.+..+++..++.+ .......++.-.+..+..+|..+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (353)
T PRK11380 26 NFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLI 84 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHH
Confidence 455555666666666676666655444433 3344556666666666666665444433
No 126
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.29 E-value=2.7e+02 Score=23.88 Aligned_cols=62 Identities=5% Similarity=-0.175 Sum_probs=33.8
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCC
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREH--S-GPALALSFLIAGIASAFSAFCYAELASRCPSA 113 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~--~-G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~ 113 (583)
.|....+..+-.++|+..+.....+.... + ....+..++++.+..+|..+...-.--+++..
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~ 104 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGY 104 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 35554444444445554333332222222 2 22377777888888888877776666666653
No 127
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=27.81 E-value=3.8e+02 Score=28.75 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHH
Q 007966 342 ALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 396 (583)
Q Consensus 342 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~ 396 (583)
+.++++....++.|+.+...--||. |+| ..=..++++++++.+++.
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~--------npr-~fm~~gLilsai~nil~G 112 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRS--------NPR-YFMAFGLILSAIVNILFG 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--------CCc-eeehHHHHHHHHHHHHHh
Confidence 3444555666788898888888855 444 222235666666655443
No 128
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=27.32 E-value=50 Score=22.45 Aligned_cols=16 Identities=6% Similarity=0.239 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhccccc
Q 007966 542 ALLLCGLIVLTSINQD 557 (583)
Q Consensus 542 ~~l~~~~~~~~~~~~~ 557 (583)
.+++++.+++.|+|++
T Consensus 24 I~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 24 IIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHhheEEecc
Confidence 4444445555455543
No 129
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=25.89 E-value=79 Score=29.93 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=24.5
Q ss_pred hhhhhhCcC-CchhhHHHHHHHHHHHHHHHHHH
Q 007966 271 TAEEVKNPQ-RDLPLGIGTALSICCALYMLVSI 302 (583)
Q Consensus 271 ~~~E~knP~-k~~p~a~~~~~~i~~vlyil~~~ 302 (583)
..|-..||| |..||+.+.+.+.+.++-+....
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~ 235 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVL 235 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 346678999 99999999998877776555444
No 130
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=24.52 E-value=33 Score=29.22 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhccccccc
Q 007966 542 ALLLCGLIVLTSINQDEA 559 (583)
Q Consensus 542 ~~l~~~~~~~~~~~~~~~ 559 (583)
.++++++.++.+|+|++|
T Consensus 9 ~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 9 FVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHheechHHHH
Confidence 445555556655555543
No 131
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.97 E-value=2e+02 Score=26.03 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHHhccChH--HHHHHHHHHH--HHHHHHHHHHHHhhhC-cC-CCchhhhH
Q 007966 55 HLVAIGVGSTIGAGVYILVGTVAREHSGPA--LALSFLIAGI--ASAFSAFCYAELASRC-PS-AGSAYHYS 120 (583)
Q Consensus 55 ~~~~l~~~~viG~gif~~~~~i~~~~~G~~--~i~~~ii~~l--~~~~~~l~~~el~s~~-p~-~GG~y~~~ 120 (583)
-+++.++=...|.+.|.....+. ..+... .+..++..++ ..-+..+.|+-|++.+ |+ .|+..-|-
T Consensus 65 m~~~~GiP~~lG~~~f~~~y~l~-~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 65 MAVFVGIPTALGVAVFVVFYYLK-SRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred HHHHhchHHHHHHHHHHHHHHHH-hccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence 33444444455666665554432 223222 3333333333 3334788999999877 55 67765554
No 132
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.95 E-value=67 Score=28.83 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=8.8
Q ss_pred cccccCCCCCCeeE
Q 007966 558 EARHNFGHAGGMVF 571 (583)
Q Consensus 558 ~~~~~~~~~~~~~~ 571 (583)
++|.+|-.+-|=+.
T Consensus 77 ~kktdfidSdGkvv 90 (154)
T PF04478_consen 77 RKKTDFIDSDGKVV 90 (154)
T ss_pred cccCccccCCCcEE
Confidence 34567877766553
No 133
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=73 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 007966 537 CGIGGALLLCGLIVLTSINQD 557 (583)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~ 557 (583)
..+--.+++++++++.+++++
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 344447788888899998875
No 134
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=23.60 E-value=1e+03 Score=26.18 Aligned_cols=43 Identities=5% Similarity=-0.072 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCchHHHHHHH
Q 007966 92 AGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGW 134 (583)
Q Consensus 92 ~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~ 134 (583)
..++.+..+..|+-.+-++++..-......+.+..--+++.-.
T Consensus 303 I~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~ 345 (502)
T PF03806_consen 303 IFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLA 345 (502)
T ss_pred HHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555666889999999999987778888888887766655443
No 135
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=22.14 E-value=6.9e+02 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.330 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007966 401 VSALAGMVSVGTLLAFTMVAISVL 424 (583)
Q Consensus 401 ~~~l~~l~~~~~~~~~~~~~~a~i 424 (583)
...+.........+.+....+.+.
T Consensus 31 ~~~~~~~~~~~~~~l~~~~~~~~~ 54 (330)
T PF03595_consen 31 LAILSEVLFILALILFLVLLVLYL 54 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555444333
Done!