Query 007966
Match_columns 583
No_of_seqs 242 out of 1800
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 14:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.7E-46 9.3E-51 401.4 41.8 365 46-431 5-380 (445)
2 4djk_A Probable glutamate/gamm 100.0 2.8E-45 9.7E-50 400.5 38.1 372 44-432 6-398 (511)
3 3gia_A Uncharacterized protein 100.0 3.5E-44 1.2E-48 384.9 41.4 365 47-432 4-371 (444)
4 2jln_A MHP1; hydantoin, transp 99.1 7.5E-07 2.6E-11 95.9 37.5 286 47-361 23-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.1 0.0039 1.3E-07 67.3 30.9 110 48-160 19-130 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.0028 9.4E-08 69.5 28.1 292 48-361 48-380 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.8 0.0046 1.6E-07 66.0 24.4 244 52-298 10-291 (519)
8 2wsw_A BCCT family betaine/car 88.0 29 0.00099 36.4 31.9 88 333-426 410-502 (509)
9 4ain_A Glycine betaine transpo 83.8 47 0.0016 35.0 26.0 89 332-429 410-506 (539)
10 2ks1_B Epidermal growth factor 44.1 23 0.00077 23.7 3.3 8 550-557 32-39 (44)
11 2l2t_A Receptor tyrosine-prote 41.1 17 0.00057 24.3 2.3 8 534-541 12-19 (44)
12 2k9j_B Integrin beta-3; transm 38.4 29 0.001 23.0 3.2 27 528-554 6-32 (43)
13 2knc_B Integrin beta-3; transm 21.9 41 0.0014 25.5 1.9 25 530-554 9-33 (79)
14 2l8s_A Integrin alpha-1; trans 21.6 87 0.003 21.8 3.3 24 531-554 9-32 (54)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.7e-46 Score=401.37 Aligned_cols=365 Identities=22% Similarity=0.318 Sum_probs=308.3
Q ss_pred ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (583)
Q Consensus 46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g 125 (583)
+++|+++++++.++.+++++|+|+|..++.++ .+|+.++++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 46789999999999999999999999988743 4688899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
|++|++.+|.+|+.+....+......++++...+. .. ..++...+++++++++++.+|.+|+|...+
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP------IL-------KDPWVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG------GG-------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc------cc-------cccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999988887777666666543321 10 011233456888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCch
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~ 282 (583)
++.+...++++.++.+++.++.....+ ++. +++.+. ++.+++.++...+|+|.|+|.++++++|+|||+|++
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i 224 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGE---TYM--AAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV 224 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCC---CCC--CC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChh---hcc--cccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc
Confidence 999999999988877776665432111 111 112222 255788889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (583)
Q Consensus 283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 361 (583)
||++..+..+++++|++.++++....|++++. .++|..+++++.++++...++.+..+++.+++.++.+++.+|+++++
T Consensus 225 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ 304 (445)
T 3l1l_A 225 PIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA 304 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988874 45789999999988999999999999999999999999999999999
Q ss_pred HhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh-------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007966 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-------MDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (583)
Q Consensus 362 a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~-------~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~ 431 (583)
+|||.+|++|+|+||+ ++|.++++++.+++.++.++ ..++++.++.+...++.|.+.+++++++|+|+|
T Consensus 305 a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 305 ADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999987 99999999999988776654 236789999999999999999999999998765
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2.8e-45 Score=400.46 Aligned_cols=372 Identities=20% Similarity=0.237 Sum_probs=284.7
Q ss_pred ccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhh--hCcCCCchhhhH
Q 007966 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELAS--RCPSAGSAYHYS 120 (583)
Q Consensus 44 ~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~-~~~~l~~~el~s--~~p~~GG~y~~~ 120 (583)
+++++|+++++++++++++.++|.. ..+. ...+|+..++.+++++++. ++.+++++|+++ ++| +||.|.|+
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig~~--~~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMAVY--EYPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCCGG--GHHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHhhc--hhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 4568899999999999999998743 3332 3568888877777777765 569999999999 999 99999999
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007966 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (583)
Q Consensus 121 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gv 200 (583)
++.+||++|++++|.+|+++....+......+..++..+. .+. ++...+...+++++++++++++|.+|+
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~------~~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPA------LNEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGG------GTSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc------cccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999888777766666653321 111 122334455678888999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCCC-CCCCCCCCch-hhhHHHHHHHHHHHhhhhhHHHhhhhhhhC
Q 007966 201 KESTIAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGY-ELPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (583)
Q Consensus 201 k~~~~i~~~~~~~~ii~-~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~fa~~G~e~~~~~~~E~kn 277 (583)
|...+++.+...++++. ++++++.++.....++.... .+..++.|.. ..+.+.++...+|+|.|+|.++++++|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999988885543 55555555543222111111 0111222221 123445667789999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHH----cc--hhHHHHHHHHHHHHHHHHHHhhhh
Q 007966 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFAS----HG--MHWASYVITIGAVTALCSTLMGSI 351 (583)
Q Consensus 278 P~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~----~g--~~~~~~i~~~~~~~~~~~~~~~~~ 351 (583)
|+|++||++..+..+++++|++.++++...+|++++..+++..+.++. .| .+++..++.+..+++.+++.++.+
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988666655444443 45 578889999999999999999999
Q ss_pred cchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHH-HHHhhC--------HHHHHHHHHHHHHHHHHHHHHH
Q 007966 352 LPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAA-LAFFMD--------VSALAGMVSVGTLLAFTMVAIS 422 (583)
Q Consensus 352 ~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~i-l~~~~~--------~~~l~~l~~~~~~~~~~~~~~a 422 (583)
.+.+|++++++|||.+|++|+|+||+ ++|.++++++.++..+ ++.+++ ++.+.++.+...++.|.+.+++
T Consensus 310 ~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp THHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 9999999998554433 333444 6789999999999999999999
Q ss_pred HHHHhccCCC
Q 007966 423 VLILRYVPPD 432 (583)
Q Consensus 423 ~i~lr~~~~~ 432 (583)
++++|+|+++
T Consensus 389 ~~~~r~~~~~ 398 (511)
T 4djk_A 389 YIVLVLKHPD 398 (511)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999988765
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=3.5e-44 Score=384.94 Aligned_cols=365 Identities=22% Similarity=0.343 Sum_probs=316.9
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.+|+++++++.++.+++++|+|++..++... ..+|++++++|++++++.++.+++++|+++++|++||.|.|+++.+|+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 5789999999999999999999998887754 667889999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 127 GV-AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 127 ~~-g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
++ +...+|.+|+.+....+..+.++++++...+.... .++...+++++++++++++|.+|+|...+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI-------------NTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------CHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------chHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 73 55568999999999999998888888876653211 11223356788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCchhhH
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~p~a 285 (583)
++.+...++++.++++++.++.....+ ++. +...+.++.+++.++...+|+|.|+|.++++++|+|||+|++||+
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~---~~~--~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~a 224 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPS---YVI--PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRA 224 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGG---GTS--CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChh---hcC--CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHH
Confidence 999999999999888888776543221 121 123455667788888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHh
Q 007966 286 IGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (583)
Q Consensus 286 ~~~~~~i~~vlyil~~~~~~~~~~~~~l~--~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 363 (583)
+..+..+++++|++.++++....|++++. ++++..++++...+++...++.+..+++.+++.++.+++.+|++++++|
T Consensus 225 i~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 225 IFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887763 3457777888877788888999999999999999999999999999999
Q ss_pred cCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007966 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (583)
Q Consensus 364 dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~~ 432 (583)
||.+|++|+|+|+ ++|.++++++.+++.++.++.+++.+.++.+.+.++.|.+++++++++|+|+|+
T Consensus 305 dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 305 DGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp HSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999985 469999999999999988889999999999999999999999999999877543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.07 E-value=7.5e-07 Score=95.90 Aligned_cols=286 Identities=10% Similarity=-0.056 Sum_probs=157.4
Q ss_pred cccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHH
Q 007966 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (583)
Q Consensus 47 l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~---~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~ 123 (583)
.+|+.++++.+.+=++..+..+.+...+... . |.. ++++.+++.++........+..+.++-- ......|..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhh
Confidence 4678999999999888888877776555432 2 443 5555555555444444444455554432 356688899
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007966 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFG---SADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (583)
Q Consensus 124 ~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gv 200 (583)
+|++.+.+.+....+..+.+.+......++.+...+. +... . .+..+++.++...+...|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~--~--------------~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN--L--------------PLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--H--------------HHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--H--------------HHHHHHHHHHHHHHHHhCH
Confidence 9999999988888888887777776666666655441 1110 0 0223334455666778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhhhHHHHHHH-HHHHhhhhhHHHhhhhhhhCcC
Q 007966 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSAT-VFFAFIGFDAVASTAEEVKNPQ 279 (583)
Q Consensus 201 k~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fa~~G~e~~~~~~~E~knP~ 279 (583)
|...+++.+...+.++.++.+.+..+..... ...+.....+ +....+++.++.. ..+...+.-..+.++.+.|+++
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~-~~~~~~~~~~--~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~ 238 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADV-SLGEVMSMGG--ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDP 238 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CHHHHTTCCC--SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhhhccCC--ccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCc
Confidence 9999999998888877766655544432111 0011111010 0112234433322 1222244456778888888865
Q ss_pred Cc-----------hhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchh-HHHHHHH-HHHHHHHHHH
Q 007966 280 RD-----------LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVIT-IGAVTALCST 346 (583)
Q Consensus 280 k~-----------~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~i~~-~~~~~~~~~~ 346 (583)
+. .-++...+..+..++..+....+.... ...+|.....+...++ ++..+.. +.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~-----~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~t 313 (501)
T 2jln_A 239 NASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLV-----GEWNPVIAITEVVGGVSIPMAILFQVFVLLATWST 313 (501)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 41 233333333333322222222222211 2234554333323223 2255666 6677777665
Q ss_pred Hh-hhhcchhHHHHHH
Q 007966 347 LM-GSILPQPRILMAM 361 (583)
Q Consensus 347 ~~-~~~~~~sR~l~~~ 361 (583)
-. ..+++.+--++.+
T Consensus 314 n~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 314 NPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHh
Confidence 55 3677776666665
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.07 E-value=0.0039 Score=67.35 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=63.7
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.|++++|-..+-.+++.++...+......++. .|.. ..+.|.. ++.....++.+...-.+. +.-..++|.++-+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWMS-AITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 68899999988888888877766655554444 4544 3333332 222222333333333333 234689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHc
Q 007966 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFG 160 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 160 (583)
+...+.+....+.+.. ..+....+.+..++..++
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G 130 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG 130 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9877777665554433 334444444445555543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.99 E-value=0.0028 Score=69.52 Aligned_cols=292 Identities=13% Similarity=0.056 Sum_probs=137.7
Q ss_pred ccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhCc
Q 007966 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (583)
Q Consensus 48 ~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~-~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g~ 126 (583)
.|+++++-..+-.+++..+..-+......++. .|.. ..+.|. ..+.....++.+...-.+.. .-..++|.++-+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEKG-IYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTT-CCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC-CCCcHHHHHHHccC
Confidence 58899987776666676777666555544444 4543 333332 12222223333444333332 34689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (583)
Q Consensus 127 ~~g~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~ 205 (583)
+...+.+....+.+.+ +.+....+.+..++..++ .+.+. .+.+..++........|+|...+
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G----i~~~~-------------~i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMY-------------SILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----CCHHH-------------HHHHHHHHHHHHHHTTC---CCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHH-------------HHHHHHHHHHHHHHhcchHHHHH
Confidence 8877777665544433 445555555566666554 11111 11222223344444567775555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc----------------ccCCCCCCCCCC--CCCchhhhHHH-HHHHHHHHhhhhh
Q 007966 206 AQAIVTTANVLAMLFVIIAGSYLGF----------------KTGWSGYELPTG--YFPFGVNGMLA-GSATVFFAFIGFD 266 (583)
Q Consensus 206 i~~~~~~~~ii~~~~~ii~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~fa~~G~e 266 (583)
...+=+.++++..+++.+.++.... .+.++......+ +....+...+. +.......+.|.+
T Consensus 188 TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 267 (593)
T 2xq2_A 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN 267 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 4444444444443333322221100 000110000000 00001111111 1112223344544
Q ss_pred -HHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHH----HHHHhccc--------------CCCC-CCCChHHHHHHHc
Q 007966 267 -AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVS----IVIVGLVP--------------YYEM-DPDTPISSAFASH 326 (583)
Q Consensus 267 -~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~----~~~~~~~~--------------~~~l-~~~~~~~~~~~~~ 326 (583)
....-.=+.||+ |+.+|+.+++.....++.++.. .+.....+ ..++ ++|..+.... +.
T Consensus 268 q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~ 345 (593)
T 2xq2_A 268 QYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QF 345 (593)
T ss_dssp CSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HT
T ss_pred hHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HH
Confidence 233344466775 6788898887766544433211 11111000 0112 2233344444 55
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966 327 GMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (583)
Q Consensus 327 g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 361 (583)
.++++.-++.+..+.+..++..+.+.+.+-++..+
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~~~D 380 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMD 380 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888777777665444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.78 E-value=0.0046 Score=66.00 Aligned_cols=244 Identities=16% Similarity=0.163 Sum_probs=124.8
Q ss_pred ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHH-HHHHHHH---HHHHHhhhCcCCCchhhhHHHHhCch
Q 007966 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGI-ASAFSAF---CYAELASRCPSAGSAYHYSYICVGEG 127 (583)
Q Consensus 52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l-~~~~~~l---~~~el~s~~p~~GG~y~~~~~~~g~~ 127 (583)
+..+.++-+++..+|.|++..-.....++||.+-++.+++..+ +.+|..+ +.++.++...+.|..-.|-+- .+++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l-~~~~ 88 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL-WRNR 88 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH-SCSH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHh-cCCc
Confidence 4566777788999999999888888889999885555555333 4444433 333333334444555555332 2221
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccC----C-Ch--h-------hhhhhcc-CC-------CCccch
Q 007966 128 VAWLIGWALILEY----TIGGSAVARGISPNLAMLFGSA----D-SL--P-------FFMARQQ-IP-------GLGIIV 181 (583)
Q Consensus 128 ~g~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~----~-~~--~-------~~~~~~~-~~-------~~~~~~ 181 (583)
.....||.-.+.. ..+....+....-...+..+.. . +. . .+..+.. .+ ...+..
T Consensus 89 ~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 89 FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHH
Confidence 1112222222111 1121111111111111111110 0 00 0 1111110 00 011223
Q ss_pred hHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccCCCCCCCCCCCCCch-hhhHHHH
Q 007966 182 DPCAAILVLIVTGLLCVGI-KESTIAQAIVTTANVLAMLFVIIAGSYLGF-----KTGWSGYELPTGYFPFG-VNGMLAG 254 (583)
Q Consensus 182 ~~~~i~~~~~~~~i~~~gv-k~~~~i~~~~~~~~ii~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~ 254 (583)
.+.-+++.++..++..+|+ |..+|+..++..+.+++++++++-++.... .++...+-. +++.... ...+..+
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~-Pd~s~L~~~~vw~~A 247 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT-PDFEKLKDPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS-CCTTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-CCHHHhCCHHHHHHH
Confidence 2333444555666778899 778898888888777777666665553322 001000011 1121111 2346778
Q ss_pred HHHHHHHhh-hhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHH
Q 007966 255 SATVFFAFI-GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYM 298 (583)
Q Consensus 255 ~~~~~fa~~-G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyi 298 (583)
...++|+.+ |+-....+++-.|+ +.|++|........-+...+
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 889999984 88899999998876 56777766655555444433
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=87.95 E-value=29 Score=36.44 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHH--HHHHHHHHHHHHhhCHH---HHHHH
Q 007966 333 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMDVS---ALAGM 407 (583)
Q Consensus 333 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ai--ll~~~l~~il~~~~~~~---~l~~l 407 (583)
.+..+..++..+.-..++.++.+-++-.++.+|.-+ +.|+ ..+.+.. ++.++++.+++..+..+ ....+
T Consensus 410 ~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~----~~~p--~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii 483 (509)
T 2wsw_A 410 TATMWGFFILCFIATVTLINACSYTLAMSTCRSMKE----GADP--PLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIA 483 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT----TCCC--CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC----CCCC--ChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555566777788888888888765311 1122 2333333 33345555555555444 44555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007966 408 VSVGTLLAFTMVAISVLIL 426 (583)
Q Consensus 408 ~~~~~~~~~~~~~~a~i~l 426 (583)
.+.+..+..++++.+.++-
T Consensus 484 ~alPf~~v~l~~~~sl~k~ 502 (509)
T 2wsw_A 484 GGCPLFFVNIMVTLSFIKD 502 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 5566666666666665554
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=83.76 E-value=47 Score=35.05 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHH--HHHHHHHHHHHhhC---HH---H
Q 007966 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMD---VS---A 403 (583)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~ail--l~~~l~~il~~~~~---~~---~ 403 (583)
..++....++..+....++.++.+-++-.++.+|. .|++ .+.+..| +.++++.++++.+. ++ .
T Consensus 410 ~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~-------~~p~--~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt 480 (539)
T 4ain_A 410 GQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQ-------LEAN--KWVTAAWGVATAAIGLTLLLSGGDNALSNLQN 480 (539)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTC-------SSCC--HHHHHHHHHHHHHHHHHHTTC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCC-------CCCC--cchhhHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44555555555666677888888988888876542 1222 2333333 23444444444443 34 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007966 404 LAGMVSVGTLLAFTMVAISVLILRYV 429 (583)
Q Consensus 404 l~~l~~~~~~~~~~~~~~a~i~lr~~ 429 (583)
...+.+.+..+..++++.++++--++
T Consensus 481 ~~ii~alPf~~v~llm~~sl~k~l~~ 506 (539)
T 4ain_A 481 VTIVAATPFLFVVIGLMFALVKDLSN 506 (539)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666676665443
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.12 E-value=23 Score=23.70 Aligned_cols=8 Identities=13% Similarity=-0.126 Sum_probs=3.4
Q ss_pred Hhhccccc
Q 007966 550 VLTSINQD 557 (583)
Q Consensus 550 ~~~~~~~~ 557 (583)
+++++|++
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 34444443
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.15 E-value=17 Score=24.33 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 007966 534 LTLCGIGG 541 (583)
Q Consensus 534 ~~~~~~~~ 541 (583)
....++|+
T Consensus 12 IA~gVVgG 19 (44)
T 2l2t_A 12 IAAGVIGG 19 (44)
T ss_dssp HHHHHHHH
T ss_pred EEEeehHH
Confidence 34445554
No 12
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=38.42 E-value=29 Score=23.00 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=15.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcc
Q 007966 528 LPRLLQLTLCGIGGALLLCGLIVLTSI 554 (583)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 554 (583)
.++.......++++.+++..+.++.|+
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliwk 32 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIWK 32 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777765544444444444
No 13
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.86 E-value=41 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 007966 530 RLLQLTLCGIGGALLLCGLIVLTSI 554 (583)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~ 554 (583)
........++++++++..++++.|+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777766665555555554
No 14
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.57 E-value=87 Score=21.84 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 007966 531 LLQLTLCGIGGALLLCGLIVLTSI 554 (583)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~ 554 (583)
|+.+...+++|.+++..+.+.+|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888887777777765
Done!