Query 007968
Match_columns 583
No_of_seqs 258 out of 1858
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 17:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2252 Xanthine/uracil/vitami 100.0 3.6E-89 7.8E-94 727.2 38.2 408 22-536 3-411 (436)
2 PF00860 Xan_ur_permease: Perm 100.0 3.6E-47 7.8E-52 407.8 25.6 376 39-522 1-387 (389)
3 TIGR00801 ncs2 uracil-xanthine 100.0 1.3E-39 2.8E-44 352.3 37.5 384 36-534 2-414 (415)
4 TIGR03616 RutG pyrimidine util 100.0 2.1E-39 4.5E-44 351.8 34.6 389 5-537 2-426 (429)
5 TIGR03173 pbuX xanthine permea 100.0 8.5E-39 1.8E-43 344.9 34.2 369 45-536 1-405 (406)
6 PRK10720 uracil transporter; P 100.0 7E-38 1.5E-42 339.9 37.4 376 26-538 2-407 (428)
7 COG0659 SUL1 Sulfate permease 100.0 1E-37 2.2E-42 347.2 39.2 358 125-538 51-415 (554)
8 COG2233 UraA Xanthine/uracil p 100.0 1E-35 2.2E-40 319.8 31.7 388 29-537 6-434 (451)
9 PRK11660 putative transporter; 100.0 1.9E-34 4.1E-39 323.3 37.4 356 127-537 61-445 (568)
10 TIGR00815 sulP high affinity s 100.0 1.1E-31 2.5E-36 300.7 33.0 355 128-538 47-425 (563)
11 PRK11412 putative uracil/xanth 100.0 6.5E-30 1.4E-34 277.2 36.2 380 39-536 8-427 (433)
12 PF00916 Sulfate_transp: Sulfa 99.9 2.3E-24 4.9E-29 220.6 12.3 260 190-502 1-278 (280)
13 KOG0236 Sulfate/bicarbonate/ox 99.9 1E-22 2.2E-27 231.7 26.4 358 126-538 111-494 (665)
14 KOG1292 Xanthine/uracil transp 99.8 3.5E-18 7.5E-23 183.1 28.3 354 29-505 3-412 (510)
15 TIGR00843 benE benzoate transp 99.8 2.8E-17 6.1E-22 175.9 30.1 318 120-531 56-394 (395)
16 PF03594 BenE: Benzoate membra 99.5 5E-11 1.1E-15 126.5 28.8 316 119-530 39-377 (378)
17 COG3135 BenE Uncharacterized p 99.1 1.9E-07 4.2E-12 98.0 28.4 318 120-533 55-395 (402)
18 TIGR00834 ae anion exchange pr 98.3 0.00021 4.5E-09 84.2 26.2 341 125-490 404-792 (900)
19 KOG1172 Na+-independent Cl/HCO 97.9 0.012 2.6E-07 68.7 30.4 333 123-490 393-768 (876)
20 PF00955 HCO3_cotransp: HCO3- 96.9 0.00041 9E-09 77.6 1.9 346 124-492 67-475 (510)
21 PF11840 DUF3360: Protein of u 85.5 38 0.00082 37.1 16.1 49 177-225 145-193 (492)
22 COG2233 UraA Xanthine/uracil p 71.5 18 0.00039 40.5 8.8 68 466-533 129-217 (451)
23 TIGR00801 ncs2 uracil-xanthine 65.9 59 0.0013 35.8 11.5 127 408-534 42-207 (415)
24 PF00860 Xan_ur_permease: Perm 49.7 1.8E+02 0.0038 31.7 11.6 128 407-534 37-203 (389)
25 TIGR03173 pbuX xanthine permea 48.6 1.5E+02 0.0033 32.4 11.0 82 452-533 90-190 (406)
26 PF13792 Sulfate_tra_GLY: Sulf 43.2 25 0.00053 30.3 3.0 23 128-150 49-72 (84)
27 PRK10720 uracil transporter; P 43.1 57 0.0012 36.2 6.7 46 181-226 306-351 (428)
28 PF02308 MgtC: MgtC family; I 42.5 2.8E+02 0.0061 25.7 11.7 29 518-546 105-133 (134)
29 PRK11660 putative transporter; 41.5 2.2E+02 0.0047 32.8 11.3 150 371-533 290-445 (568)
30 PF02652 Lactate_perm: L-lacta 35.9 4.8E+02 0.01 29.9 12.7 58 371-431 66-124 (522)
31 PRK11412 putative uracil/xanth 33.2 1.3E+02 0.0028 33.7 7.4 48 179-226 319-366 (433)
32 TIGR00815 sulP high affinity s 32.5 2.8E+02 0.006 31.9 10.2 126 400-533 291-424 (563)
33 COG4392 Predicted membrane pro 30.7 1.9E+02 0.0041 26.3 6.6 67 467-535 40-106 (107)
34 TIGR03616 RutG pyrimidine util 30.1 4.6E+02 0.0099 29.2 11.1 65 467-532 138-213 (429)
35 PRK09548 PTS system ascorbate- 30.0 1.1E+02 0.0024 35.7 6.3 65 127-192 333-403 (602)
36 COG0659 SUL1 Sulfate permease 29.6 4E+02 0.0088 30.8 10.9 53 491-544 372-424 (554)
37 COG1575 MenA 1,4-dihydroxy-2-n 29.1 3.5E+02 0.0075 29.0 9.4 29 533-561 254-282 (303)
38 PF01384 PHO4: Phosphate trans 28.4 5.6E+02 0.012 27.4 11.1 31 407-437 19-49 (326)
39 PRK12996 ulaA PTS system ascor 26.8 1.2E+02 0.0026 34.1 5.8 63 127-192 326-388 (463)
40 PRK12997 PTS system ascorbate- 25.3 1.5E+02 0.0033 33.5 6.3 65 126-192 343-407 (466)
41 PF06157 DUF973: Protein of un 25.0 5.9E+02 0.013 26.9 10.3 25 470-494 114-139 (285)
42 PF15050 SCIMP: SCIMP protein 24.6 61 0.0013 30.0 2.4 36 519-557 18-53 (133)
43 COG0341 SecF Preprotein transl 23.0 9.2E+02 0.02 25.8 11.3 73 407-487 126-201 (305)
44 PF11947 DUF3464: Protein of u 21.4 70 0.0015 30.8 2.4 49 139-195 66-114 (153)
45 PRK13109 flhB flagellar biosyn 21.4 4.3E+02 0.0093 28.9 8.7 34 527-563 201-234 (358)
46 TIGR02235 menA_cyano-plnt 1,4- 20.8 4.3E+02 0.0094 27.7 8.3 18 480-497 172-189 (285)
47 TIGR01404 FlhB_rel_III type II 20.7 4.9E+02 0.011 28.2 8.9 39 522-563 186-224 (342)
No 1
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-89 Score=727.17 Aligned_cols=408 Identities=41% Similarity=0.713 Sum_probs=382.7
Q ss_pred hhhhhhcccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 007968 22 NSRAGKRFKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDI 101 (583)
Q Consensus 22 ~~~~~~~F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (583)
++++|||||++||||++|||++||+|||+||+||++|||+||+++||+
T Consensus 3 ~~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~ag~~-------------------------------- 50 (436)
T COG2252 3 KGDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAAGMP-------------------------------- 50 (436)
T ss_pred hhHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhcCCC--------------------------------
Confidence 568999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHH
Q 007968 102 SCKFPPVNPGYQNCLQKTRKDLIVATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIF 181 (583)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~i~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avf 181 (583)
.++++.|||++++++|++||+++|+|++++||||+||||+|+++..+| ++||.+|+++|
T Consensus 51 ------------------~~av~~AT~l~a~~gs~~mgl~An~P~alapgmglnAfFaftvv~~~g---i~wq~AL~aVF 109 (436)
T COG2252 51 ------------------VGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGLNAFFAFTVVLGMG---LSWQVALGAVF 109 (436)
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhHHHHHHHHHHHhcC---CcHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999888 99999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCcccccccccccc
Q 007968 182 IEGLIFLFISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSI 261 (583)
Q Consensus 182 lsGli~illg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~ 261 (583)
++|++|++++++|+|+|++|.+|+++|+++.+|||+||+++|++++ |+++.++++++.+|
T Consensus 110 ~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~---Givv~~~~tlv~LG----------------- 169 (436)
T COG2252 110 LSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNA---GIVVANPATLVALG----------------- 169 (436)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhC---CeEEecCcceEEee-----------------
Confidence 9999999999999999999999999999999999999999999987 89998888888777
Q ss_pred CCccccCCCCCCcCchhcccccCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcccccCCCCCCCcc
Q 007968 262 NGTVSLLPGGSVSGDIMCLNNRMESHTFWLGIVGFVIIAYCLVKNIKGAMIYGIVFVTAISWFRNTSVTAFPSTESGNSA 341 (583)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lgligl~li~il~~~~v~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~ 341 (583)
++++|.++++++|++++.++..||+||+++++|+.+++++|++|.. ..+..
T Consensus 170 ---------------------~~~~p~vll~i~G~~l~~~L~~~~i~Gaili~i~~~t~~g~~~g~~--~~~~~------ 220 (436)
T COG2252 170 ---------------------DFTSPGVLLAILGLLLIIVLVSRKIKGAILIGILVTTILGIILGID--VHFGG------ 220 (436)
T ss_pred ---------------------cCCCchHHHHHHHHHHHHHHHHhhccHhhhHHHHHHHHHHHHhccc--ccccc------
Confidence 5778889999999999999999999999999999999999999952 11110
Q ss_pred cccccccccccccccccccccccc-cchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHH
Q 007968 342 YEYFKKVVDVHVIKSTAGALSFNG-MGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASI 420 (583)
Q Consensus 342 ~~~~~~~~~lP~~~~~~~~~d~~~-~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlan 420 (583)
....+|+..+.+.++|+.+ .....+++.+++++++|+||++||+.++++++|+.|+|++.+|.+|++.+|++++
T Consensus 221 -----~~~~~p~~~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t 295 (436)
T COG2252 221 -----LVGAPPSLSPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVAT 295 (436)
T ss_pred -----cccCCCCccchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHH
Confidence 0124566656677889887 6667888999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccccchhhhhhhhcCcccchHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHhhhccccccc
Q 007968 421 VVGSLLGTSPVTTFIESSTGIREGGRTGLTAITVAGYFFLAFFFTPLLASIPAWAVGPPLILVGVLMMRSVVEIEWDDMK 500 (583)
Q Consensus 421 iigglfG~~PvTs~~eSaagV~aGarTglaaiv~g~lfll~lff~Pll~~IP~aala~aLI~vG~~m~~~i~~I~~~~~~ 500 (583)
++|+++|++|+|+|+||++++++|||||++++++|++|++++|++|+++.+|.+|++|+|+++|.+|+++++++||+|..
T Consensus 296 ~~ga~~GtS~~t~yIESaaGva~GgrTGltavv~g~lFl~~lf~~Pl~~~vP~~AtapaLi~vG~lM~~~v~~id~~d~~ 375 (436)
T COG2252 296 VVGALFGTSTVTAYIESAAGVAAGGRTGLTAVVTGLLFLLSLFFSPLAALVPGYATAPALIIVGALMLSSVKQIDWSDFT 375 (436)
T ss_pred HHHHhcCCcchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHhhhccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 501 QAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLHLSD 536 (583)
Q Consensus 501 e~ipafltiv~~plt~sI~~GIa~G~i~yvll~l~~ 536 (583)
|++|+|+|+++||+||||++|+++|+++|+++|+..
T Consensus 376 ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~k~~~ 411 (436)
T COG2252 376 EAVPAFLTIVMMPLTYSIADGIAFGFISYVILKVFT 411 (436)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999843
No 2
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=3.6e-47 Score=407.83 Aligned_cols=376 Identities=29% Similarity=0.409 Sum_probs=266.6
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhhhhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccchhh
Q 007968 39 TTELRAGTATFLTMAYILAVNASILTDS-GGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPPVNPGYQNCLQ 117 (583)
Q Consensus 39 ~~Ei~aG~~tfl~m~yil~vnp~il~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (583)
|||+++|+|||++|+|++++||.|++++ |.+ .
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~-----------------------------~------------------ 33 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLD-----------------------------A------------------ 33 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhccccc-----------------------------c------------------
Confidence 6999999999999999999999999987 542 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhc-CCCCCcHHHHHHHHHHHHHHHHHHHHhhhh
Q 007968 118 KTRKDLIVATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFH-GSGNVPYKSALTAIFIEGLIFLFISALGLR 196 (583)
Q Consensus 118 ~~~~~~i~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~-G~~~~~~~~al~avflsGli~illg~~~lr 196 (583)
+...++++|+++++++|++|++..|.|+.+.||++.+.+.++..+..+ +..+.+||.++++++++|+++++++++++|
T Consensus 34 -~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~ 112 (389)
T PF00860_consen 34 -DTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLR 112 (389)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchH
Confidence 135899999999999999999999999999999999988877776542 112368999999999999999999999999
Q ss_pred hhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCc
Q 007968 197 TKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGD 276 (583)
Q Consensus 197 ~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 276 (583)
+|++|++||.|+.++..+||++++.+++++.. ....+++. ..
T Consensus 113 ~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~---~~~~~~~~-~~---------------------------------- 154 (389)
T PF00860_consen 113 KRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAG---GIWGNPDG-LL---------------------------------- 154 (389)
T ss_dssp -HHHHH--HHHHHHHHHHHHHHHHHHHHHHTT---SS---BTT--B----------------------------------
T ss_pred HHHHHHhChhheEeeEeeehhhhhhhHhhccc---cccccccc-cc----------------------------------
Confidence 99999999999999999999999999999873 22111000 00
Q ss_pred hhcccccCchHHHHHHHHHHHHHHHH----HhhccchhHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccccc
Q 007968 277 IMCLNNRMESHTFWLGIVGFVIIAYC----LVKNIKGAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVH 352 (583)
Q Consensus 277 ~~~~~~~~~~p~~~lgligl~li~il----~~~~v~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP 352 (583)
........+++..+.+.+.+ ..++.+.++++|+++++++++.+|. .++++. .. ..+|+.+|
T Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ailigi~~g~i~~~~~g~--~~~~~~-~~------~~~~~~~p 219 (389)
T PF00860_consen 155 ------VGDGKNLGLAVLTLLFILLLSLFLKGFLRKGAILIGIIAGWIVAAILGV--VDFSPS-VS------SAPWFSLP 219 (389)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHH--TTSSH--HH------HS-SS---
T ss_pred ------cccccccccccccchhhhhhhhhhhhhcccccchhhhhhhhhhhhcccc--cccCcc-cc------cccccccc
Confidence 00111222333333333222 2344578999999999999999985 555331 00 13678888
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccc
Q 007968 353 VIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVT 432 (583)
Q Consensus 353 ~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvT 432 (583)
.+.+ ++ +.. +++..++.++.+.+++++|++|++.++++..+..+++ +++.+|++.+||++++++++||++|+|
T Consensus 220 ~~~~-~g---~p~-f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~--~~~~~r~l~~dg~~~~l~gl~G~~~~t 292 (389)
T PF00860_consen 220 SPFP-FG---WPS-FDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPR--PPRIRRGLLADGLGTILAGLFGTSPTT 292 (389)
T ss_dssp ----------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCC--CCCHHHHHHHHHHHHHHHHHHT---EE
T ss_pred cccc-cc---ccc-ccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCcc--chhhcccceeeeeeeeechhhcCCCCc
Confidence 6532 22 211 2235577888889999999999999999977654433 889999999999999999999999999
Q ss_pred cchhhhhhhhcC----cccchHHHHHHHHHHHHHHHHHHHHhcChhhhhHH-HHHHHHHHHHHhhhcccccccchhhHHH
Q 007968 433 TFIESSTGIREG----GRTGLTAITVAGYFFLAFFFTPLLASIPAWAVGPP-LILVGVLMMRSVVEIEWDDMKQAIPAFV 507 (583)
Q Consensus 433 s~~eSaagV~aG----arTglaaiv~g~lfll~lff~Pll~~IP~aala~a-LI~vG~~m~~~i~~I~~~~~~e~ipafl 507 (583)
+|+||++.++++ .||++++.+..+++.++.++.|+++.||.++++++ ++++|.+|++++++++|+|..|..+.++
T Consensus 293 ~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~~~~~r~~~i 372 (389)
T PF00860_consen 293 TYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVDLDSARNAFI 372 (389)
T ss_dssp E-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHH
T ss_pred cccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecccCccccHHH
Confidence 999999999998 88888888888888888999999999999996554 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007968 508 TLILMPMTYSVAYGL 522 (583)
Q Consensus 508 tiv~~plt~sI~~GI 522 (583)
+.+.+++++++.++.
T Consensus 373 v~~~l~~g~~i~~~p 387 (389)
T PF00860_consen 373 VGLSLPLGLSIAFGP 387 (389)
T ss_dssp HHHHHHHHHH-----
T ss_pred HHHhHHHHHHHhccC
Confidence 999999999987764
No 3
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=1.3e-39 Score=352.27 Aligned_cols=384 Identities=18% Similarity=0.220 Sum_probs=294.4
Q ss_pred CchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccch
Q 007968 36 TSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPPVNPGYQNC 115 (583)
Q Consensus 36 t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (583)
.++++-+..|+||.++|.-..++.|.+++.+-++
T Consensus 2 ~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~l~---------------------------------------------- 35 (415)
T TIGR00801 2 PPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAPLS---------------------------------------------- 35 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----------------------------------------------
Confidence 5678999999999999999999999999975432
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCcccccCCCccc-hhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHh-
Q 007968 116 LQKTRKDLIVATTASALIGCLIMGIFANLPLALAPGMGTN-AYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISAL- 193 (583)
Q Consensus 116 ~~~~~~~~i~AT~l~a~igtllmg~~a~lPi~lapgmG~n-a~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~- 193 (583)
+++...++++|+++++++|++|++.+|.|..+.+.||.+ +|+++.++..++ ++||.++++++++|+++++++++
T Consensus 36 -~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~---~~~~~~~g~~i~~gl~~~ll~~~~ 111 (415)
T TIGR00801 36 -AEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSG---LGIPAIMGALIATGLVYTLLSLLI 111 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 133789999999999999999999999888888999999 999988876654 78999999999999999999985
Q ss_pred -h-hhhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCC
Q 007968 194 -G-LRTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGG 271 (583)
Q Consensus 194 -~-lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~ 271 (583)
| .|+|++|+|||.|+.++.++||++|+.+++++.. ....++++
T Consensus 112 ~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~---g~~~~~~~-------------------------------- 156 (415)
T TIGR00801 112 KKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAA---GGEAAMSS-------------------------------- 156 (415)
T ss_pred HHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhc---cCCCcccc--------------------------------
Confidence 4 4789999999999999999999999999999873 22111100
Q ss_pred CCcCchhcccccCch-HHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHhcCcccccCCCCCCCcccccc
Q 007968 272 SVSGDIMCLNNRMES-HTFWLGIVGFVIIAYCLVKNIKG-----AMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYF 345 (583)
Q Consensus 272 ~~~~~~~~~~~~~~~-p~~~lgligl~li~il~~~~v~g-----aiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~ 345 (583)
.++.+ +...+++++++++ ++..|+.|+ ++++++++++++++.+|. .|++. +. .
T Consensus 157 ----------~~~~~~~~~~vg~~~l~~~-vl~~~~~~g~~~~~aiLigiv~g~i~a~~lg~--~~~~~--v~------~ 215 (415)
T TIGR00801 157 ----------ATYGSLENLGVAFVVLALI-ILLNRFGKGFLKSISILIGILVGYILALFMGI--VDFSP--VI------D 215 (415)
T ss_pred ----------cccCchhhHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC--ccchh--hc------c
Confidence 02222 3456888887654 445555555 789999999999999996 45432 11 1
Q ss_pred cccccccccccccc-cccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhh
Q 007968 346 KKVVDVHVIKSTAG-ALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGS 424 (583)
Q Consensus 346 ~~~~~lP~~~~~~~-~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigg 424 (583)
.+|+++|++.+ ++ +||+ ..+..++.+.+++++|++|+..+++++.|. |.|+ +++.||++++||++|++++
T Consensus 216 ~~~~~lP~~~~-~g~~f~~------~~~~~~~~i~lv~~~es~g~~~a~a~~~g~-~~~~-~~~~~r~l~adGl~~i~ag 286 (415)
T TIGR00801 216 APWFSLPTPFT-FGPSFEW------PAILTMLPVAIVSLVESIGDITATADVSGR-DLSG-DPRLHRGVLADGLATLLAG 286 (415)
T ss_pred CcccccCCccC-CCceecH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhCC-CCCC-CccccchHHHhhHHHHHHH
Confidence 25777887642 22 3444 346677889999999999999999998753 2222 6789999999999999999
Q ss_pred hcCCCccccchhhhhhhh-cCcccchHHHHHHHHHH-HHHH--HHHHHHhcChhhhhHH-HHHHHHHHHHHhhhc---cc
Q 007968 425 LLGTSPVTTFIESSTGIR-EGGRTGLTAITVAGYFF-LAFF--FTPLLASIPAWAVGPP-LILVGVLMMRSVVEI---EW 496 (583)
Q Consensus 425 lfG~~PvTs~~eSaagV~-aGarTglaaiv~g~lfl-l~lf--f~Pll~~IP~aala~a-LI~vG~~m~~~i~~I---~~ 496 (583)
+||++|+|+|+||++-++ .|.++|.+.+.+|++++ +.++ +.++++.||.++++++ ++++|.+...+++.+ ++
T Consensus 287 lfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~~~~~ 366 (415)
T TIGR00801 287 LFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILIRNKL 366 (415)
T ss_pred hcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999986665 68889998888888766 4455 7889999999999999 467787777666655 45
Q ss_pred ccccchhh-H---HHHHH--HHHHHHH----HHHHHHHHHHHHHHHHH
Q 007968 497 DDMKQAIP-A---FVTLI--LMPMTYS----VAYGLIGGIGTYIVLHL 534 (583)
Q Consensus 497 ~~~~e~ip-a---fltiv--~~plt~s----I~~GIa~G~i~yvll~l 534 (583)
++.++... . ++.+. ..|-.++ ..+|++.|.++.+++|+
T Consensus 367 ~~~r~~~i~~~s~~~g~~~~~~p~~~~~~p~~~~g~~~g~~~ai~Ln~ 414 (415)
T TIGR00801 367 DNRRNRNIIAASVGLGLGVTGVPDIFGNFPLLLSGIALAGIVAILLNL 414 (415)
T ss_pred CcccceehHHHHHHHHHHHhccHHHHhhCchhcccHHHHHHHHHHHhc
Confidence 42333222 1 11111 1243333 45999999999999985
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=2.1e-39 Score=351.79 Aligned_cols=389 Identities=19% Similarity=0.203 Sum_probs=283.2
Q ss_pred CCCCCCChhhhhhH-HHHhhhhhhcccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 007968 5 PEPEKPSLPTKINT-FVANSRAGKRFKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPN 83 (583)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~ 83 (583)
.||--|+|.-|.|- |. ..|+++|| .++++|+++|+||+++|+|+.++||.|+ |++
T Consensus 2 ~~~~~~~~~~~~~~~~~------~~~~~d~~-~p~~~~~~~GlQh~lam~~~~v~~Plil---gl~-------------- 57 (429)
T TIGR03616 2 AEPWFPKWKPKQGSLEH------HPVAPDER-LPAAQTIVMGLQHAVAMFGATVLMPLLM---GFD-------------- 57 (429)
T ss_pred CCccCCCceeccccCcC------cccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCC--------------
Confidence 58999999877763 21 45888888 8999999999999999999999999998 353
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHHHH--hCCcccccCCCccchhhhhh
Q 007968 84 IALPDCTGPSYRIVQPDISCKFPPVNPGYQNCLQKTRKDLIVATTASALIGCLIMGIF--ANLPLALAPGMGTNAYFAYS 161 (583)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~AT~l~a~igtllmg~~--a~lPi~lapgmG~na~~a~~ 161 (583)
+ + +|+++|+++|++|++. +|+|+.++++ ..|.+.
T Consensus 58 ---------------~---------------------~----~tl~~sGi~TllQ~~~~G~rlP~v~G~s----f~f~~~ 93 (429)
T TIGR03616 58 ---------------P---------------------N----LTILMSGIGTLLFFLITGGRVPSYLGSS----AAFVGA 93 (429)
T ss_pred ---------------H---------------------h----HHHHHHHHHHHHHHHHhCCCceeEEcCc----HHHHHH
Confidence 1 1 5799999999999854 8999998665 444444
Q ss_pred hhhhcCC----CCCcHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccc
Q 007968 162 VVGFHGS----GNVPYKSALTAIFIEGLIFLFISALGLR---TKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVS 234 (583)
Q Consensus 162 vv~~~G~----~~~~~~~al~avflsGli~illg~~~lr---~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv 234 (583)
++...+. .+.+++.++++++++|+++++++++++| ++++|++||.|+..+...||+.++.+|+++..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~----- 168 (429)
T TIGR03616 94 VIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSA----- 168 (429)
T ss_pred HHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 4432221 1125799999999999999999999876 899999999999999999999999999875410
Q ss_pred cCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCchhcccccCchHHHHHHHHHHHHHHHHHhhcc--chhHH
Q 007968 235 YSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIMCLNNRMESHTFWLGIVGFVIIAYCLVKNI--KGAMI 312 (583)
Q Consensus 235 ~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lgligl~li~il~~~~v--~gaiL 312 (583)
+ +++++...+.++.+++.. ++.|+. +.++|
T Consensus 169 ---------~--------------------------------------~~~~~~al~tl~~i~l~~-l~~~~~l~~~avL 200 (429)
T TIGR03616 169 ---------S--------------------------------------GFDSWMAVLTILCIGAVA-VFTRGMLQRLLIL 200 (429)
T ss_pred ---------c--------------------------------------ccccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 0 123333333333333332 333444 56899
Q ss_pred HHHHHHHHHHHHh----cCc-ccccCCCCCCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhH
Q 007968 313 YGIVFVTAISWFR----NTS-VTAFPSTESGNSAYEYFKKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTT 387 (583)
Q Consensus 313 igIivgtvia~~~----G~~-v~~~~~~~~g~~~~~~~~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~ 387 (583)
+|+++++++++.+ |.. ..|+.. +. .++|+++|++. .++||++. +..++.++++.++|++
T Consensus 201 iGivvG~iva~~l~~~~g~~~~vd~s~--v~------~a~~~~lP~~~--~p~f~~~~------il~~~~~~lv~~~esi 264 (429)
T TIGR03616 201 VGLIAAYLAYFILTNVFGLGKAVDFSP--IS------QAAWFGLPNFH--TPVFNANA------MLLIAPVALILVAENL 264 (429)
T ss_pred HHHHHHHHHHHHHhhhcCCCccccCcc--cc------cCccccCCcCC--CceEcHHH------HHHHHHHHHHHHHHhh
Confidence 9999999998875 311 123321 11 13678888764 34566643 4566777889999999
Q ss_pred hHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccccchhhhhhhhcCcccchHH---HHHHHHHHHHHHH
Q 007968 388 GTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVTTFIESSTGIREGGRTGLTA---ITVAGYFFLAFFF 464 (583)
Q Consensus 388 Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvTs~~eSaagV~aGarTglaa---iv~g~lfll~lff 464 (583)
|+..++++..+ ++ .+++.+|++++||++|++|+++|++|.|+|+||.+.+ ++||.++ +..+..+++.+.+
T Consensus 265 G~~~a~~~~~~---~~-~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i---~~T~v~SR~v~~~a~~~lillgl 337 (429)
T TIGR03616 265 GHFKAVAGMTG---RN-LDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVM---AVTKVYSTLVFVAAAVFAILLGF 337 (429)
T ss_pred HHHHHHHHHhC---CC-CCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeee---eecCcchHHHHHHHHHHHHHHHH
Confidence 99999998653 33 3457899999999999999999999999999997666 6888873 4445556677778
Q ss_pred HH----HHHhcChhhhhHHH-HHHHHHHHHHhhh-----cccccccchhhHHHHH----HHHH--HHHHHHHHHHHHHHH
Q 007968 465 TP----LLASIPAWAVGPPL-ILVGVLMMRSVVE-----IEWDDMKQAIPAFVTL----ILMP--MTYSVAYGLIGGIGT 528 (583)
Q Consensus 465 ~P----ll~~IP~aala~aL-I~vG~~m~~~i~~-----I~~~~~~e~ipaflti----v~~p--lt~sI~~GIa~G~i~ 528 (583)
.| +++.||.+++|+++ +++|.+...++|. .|++++++.+...+.+ ..++ +..=..+|++.|.++
T Consensus 338 ~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~l~~~~~d~~~~rn~~ivg~sl~~g~g~~~~~~~~~~~s~i~~~~~~ 417 (429)
T TIGR03616 338 SPKFGALIHTIPVAVLGGASIVVFGLIAVAGARIWVQNKVDLTQNGNLIMVAVTLVLGAGDFALTIGAFTLGGIGTATFG 417 (429)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCccceeehhHHHHHHHhHHHHHHHHHHhhCcHHHHHHH
Confidence 88 99999999999994 6778887777663 3565554544321111 1112 121134899999999
Q ss_pred HHHHHHHHH
Q 007968 529 YIVLHLSDW 537 (583)
Q Consensus 529 yvll~l~~~ 537 (583)
.+++|++.+
T Consensus 418 ai~Ln~~l~ 426 (429)
T TIGR03616 418 AIVLNALLN 426 (429)
T ss_pred HHHHHHhcC
Confidence 999998753
No 5
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=8.5e-39 Score=344.87 Aligned_cols=369 Identities=20% Similarity=0.234 Sum_probs=279.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccchhhhhhhhH
Q 007968 45 GTATFLTMAYILAVNASILTDS-GGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPPVNPGYQNCLQKTRKDL 123 (583)
Q Consensus 45 G~~tfl~m~yil~vnp~il~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (583)
|+||.++|+-..++||.+++++ |+| + ++...+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~-----------------------------~------------------~~~~~~ 33 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLS-----------------------------A------------------EQTAYL 33 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCC-----------------------------H------------------HHHHHH
Confidence 6899999999999999999998 875 1 236799
Q ss_pred HHHHHHHHHHHHHHHH--H---HhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007968 124 IVATTASALIGCLIMG--I---FANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGLRTK 198 (583)
Q Consensus 124 i~AT~l~a~igtllmg--~---~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~lr~~ 198 (583)
+++|+++++++|++|. + .+|+|+.++|++ +++++.+....+ ++|+.++++++++|+++++++ ++++|
T Consensus 34 i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~---a~~~~~~~~~~~---~~~~~~~ga~~v~Gii~illg--~~~~~ 105 (406)
T TIGR03173 34 ISADLFACGIATLIQTLGIGPFGIRLPVVQGVSF---AAVGPMIAIGAG---GGLGAIFGAVIVAGLFVILLA--PFFSK 105 (406)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccceeecCcH---HHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999999999999994 3 379999999997 777766554433 789999999999999999999 46789
Q ss_pred hhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCchh
Q 007968 199 LAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIM 278 (583)
Q Consensus 199 l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 278 (583)
++|+||+.|...+.+.||+.++..++++..| . +. .
T Consensus 106 l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g--~----~~----~----------------------------------- 140 (406)
T TIGR03173 106 LVRFFPPVVTGTVITLIGLSLMPVAINWAAG--G----AG----A----------------------------------- 140 (406)
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHhcc--C----CC----c-----------------------------------
Confidence 9999999998888899999999888876521 0 00 0
Q ss_pred cccccCchH-HHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccccc
Q 007968 279 CLNNRMESH-TFWLGIVGFVIIAYCLVKNIKG-----AMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVH 352 (583)
Q Consensus 279 ~~~~~~~~p-~~~lgligl~li~il~~~~v~g-----aiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP 352 (583)
.++.++ ...+++++++++ ++..|+.|+ ++++++++++++++.+|. .+++. .++ .+|+.+|
T Consensus 141 ---~~~~~~~~~~l~l~~l~~~-il~~~~~~~~~~~~aiLi~ivvg~iva~~~g~--~~~~~--i~~------~~~~~~P 206 (406)
T TIGR03173 141 ---PDFGSPQNLGLALLTLVII-LLLNRFGKGFLRSIAVLLGLVVGTIVAAALGM--VDFSG--VAE------APWFALP 206 (406)
T ss_pred ---ccccchHHHHHHHHHHHHH-HHHHHHhhhHHHHhHHHHHHHHHHHHHHHhcC--CCchh--hcc------CCeeeCC
Confidence 012222 345777776655 444455554 789999999999999986 44432 111 1456666
Q ss_pred cccc-ccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCcc
Q 007968 353 VIKS-TAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPV 431 (583)
Q Consensus 353 ~~~~-~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~Pv 431 (583)
.+.+ ..++||++. +..++.+++++++|++|+..+++++. |++.++++.||++++||++|+++++||++|+
T Consensus 207 ~~~~~~~P~f~~~~------~~~~~~~~lv~~~esig~~~a~~~~~---g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~ 277 (406)
T TIGR03173 207 TPFHFGAPTFDLVA------ILTMIIVYLVSMVETTGDFLALGEIT---GRPITEKDLAGGLRADGLGSALGGLFNTFPY 277 (406)
T ss_pred CCCcCCCCeeCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCchhccchHHhccHHHHHHHHhCCCCC
Confidence 5321 122455543 44567788999999999999998864 4566778999999999999999999999999
Q ss_pred ccchhhhhhhh-cCcccchHHHHHHHHHHHHHH---HHHHHHhcChhhhhHHH-HHHHHHHHHHh---hhcccccccchh
Q 007968 432 TTFIESSTGIR-EGGRTGLTAITVAGYFFLAFF---FTPLLASIPAWAVGPPL-ILVGVLMMRSV---VEIEWDDMKQAI 503 (583)
Q Consensus 432 Ts~~eSaagV~-aGarTglaaiv~g~lfll~lf---f~Pll~~IP~aala~aL-I~vG~~m~~~i---~~I~~~~~~e~i 503 (583)
|+|+||++.++ .|+|||++.+++|+++++..+ +.+++++||.+++++++ +++|.+...++ ++.+|+++++.+
T Consensus 278 t~~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~ 357 (406)
T TIGR03173 278 TSFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLL 357 (406)
T ss_pred cchhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceeh
Confidence 99999987765 699999999888887764433 68899999999999985 56676665544 455777776544
Q ss_pred hHHHHHH------HHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 007968 504 PAFVTLI------LMP---------MTYSVAYGLIGGIGTYIVLHLSD 536 (583)
Q Consensus 504 pafltiv------~~p---------lt~sI~~GIa~G~i~yvll~l~~ 536 (583)
...+.++ ..| +.+-+.+|++.|.++++++|+..
T Consensus 358 i~g~~~~~g~~~~~~p~~~~~~p~~~~~~~~~~~~~g~~~ai~l~~~~ 405 (406)
T TIGR03173 358 IVAVSLGLGLGPTVVPEFFSQLPAWAQTLFSSGIAVGAISAILLNLLF 405 (406)
T ss_pred hhHHHHHHHHHHHhhHHHHHHChHHHHHHHhCcHHHHHHHHHHHHhhc
Confidence 4322222 223 33445699999999999999763
No 6
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=7e-38 Score=339.87 Aligned_cols=376 Identities=17% Similarity=0.184 Sum_probs=271.7
Q ss_pred hhcccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 007968 26 GKRFKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKF 105 (583)
Q Consensus 26 ~~~F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (583)
+..|+++|| .++++-+..|+||+++|.-..++.|.++ |++ +
T Consensus 2 ~~~~~~~~~-~p~~~~~~lglQhvl~m~~~~i~~Pli~---gl~-----------------------------~------ 42 (428)
T PRK10720 2 RRAIGVSER-PPLLQTIPLSLQHLFAMFGATVLVPILF---HIN-----------------------------P------ 42 (428)
T ss_pred CcccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhc---CCC-----------------------------H------
Confidence 456888888 8899999999999999999999999988 553 1
Q ss_pred CCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHHHH--hCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHH
Q 007968 106 PPVNPGYQNCLQKTRKDLIVATTASALIGCLIMGIF--ANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIE 183 (583)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~i~AT~l~a~igtllmg~~--a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avfls 183 (583)
..++++|+++|++|.+. +|+|+.++|+ .+|++..... + ..+||+++++++++
T Consensus 43 -------------------~~~l~~sGi~TliQ~~~~g~rlP~~~G~s---fa~i~~~~~~--~--~~~~~~~lgav~v~ 96 (428)
T PRK10720 43 -------------------ATVLLFNGIGTLLYLFICKGKIPAYLGSS---FAFISPVLLL--L--PLGYEVALGGFIMC 96 (428)
T ss_pred -------------------HHHHHHHHHHHHHHHHhccCccceEEeCc---HHHHHHHHHH--H--HccHHHHHHHHHHH
Confidence 11679999999999864 5899999996 4555433222 1 14899999999999
Q ss_pred HHHHHHHHHh--hh-hhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccc
Q 007968 184 GLIFLFISAL--GL-RTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTS 260 (583)
Q Consensus 184 Gli~illg~~--~l-r~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~ 260 (583)
|+++++++++ |+ |+|++|+|||.|+..+.+.||+.++.+++++. |....+ +
T Consensus 97 Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~---g~~~~~-------~---------------- 150 (428)
T PRK10720 97 GVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMA---GLLPAE-------G---------------- 150 (428)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhc---cccCCC-------C----------------
Confidence 9999999997 33 78999999999988888888888887777643 211100 0
Q ss_pred cCCccccCCCCCCcCchhcccccCchHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHhcCcccccCCC
Q 007968 261 INGTVSLLPGGSVSGDIMCLNNRMESHTFWLGIVGFVIIAYCLVKNIKG-----AMIYGIVFVTAISWFRNTSVTAFPST 335 (583)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lgligl~li~il~~~~v~g-----aiLigIivgtvia~~~G~~v~~~~~~ 335 (583)
+..+.+...+++++++++++ ..++.|+ ++++|++++|++++++|. .+++.
T Consensus 151 ---------------------~~~~~~~~~lalv~l~iil~-~~~~~kg~~~~~~iLigIvvG~ila~~lG~--~d~~~- 205 (428)
T PRK10720 151 ---------------------QTPDSKTIIISMVTLAVTVL-GSVLFRGFLAIIPILIGVLVGYALSFAMGM--VDTTP- 205 (428)
T ss_pred ---------------------cccchHHHHHHHHHHHHHHH-HHHHhccHHHHhHHHHHHHHHHHHHHHhcC--CCHHH-
Confidence 01234566788888877766 3333333 789999999999999996 44422
Q ss_pred CCCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCC-CCccCCchhhh
Q 007968 336 ESGNSAYEYFKKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLN-GDFEGQYFAFM 414 (583)
Q Consensus 336 ~~g~~~~~~~~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~-g~~~~~~r~Li 414 (583)
+++ .+|+++|++. .++||+.. +..++.+++++++|++|++.++++. .+++ .++++.||+++
T Consensus 206 -v~~------a~~~~lP~~~--~P~fd~~~------il~l~~~~lv~~~EsiG~~~a~~~~---~~~~~~~~~~~~r~l~ 267 (428)
T PRK10720 206 -IIE------AHWFALPTFY--TPRFEWFA------ILTILPAALVVIAEHVGHLVVTANI---VKKDLLRDPGLHRSMF 267 (428)
T ss_pred -hhc------CccccCCCCC--CCcCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCCccccchHh
Confidence 121 2467788753 34566654 3355666778899999999999874 3445 35689999999
Q ss_pred hhhHHHHHhhhcCCCccccchhhhhhhhcCcccchHHHH---HHHHHH-HHHH---HHHHHHhcChhhhhHH-HHHHHHH
Q 007968 415 SDAASIVVGSLLGTSPVTTFIESSTGIREGGRTGLTAIT---VAGYFF-LAFF---FTPLLASIPAWAVGPP-LILVGVL 486 (583)
Q Consensus 415 adGlaniigglfG~~PvTs~~eSaagV~aGarTglaaiv---~g~lfl-l~lf---f~Pll~~IP~aala~a-LI~vG~~ 486 (583)
+||++|++|++||++|+|+|+||.+-+ ++||.++-. .+.+++ +..+ +.++++.||.+++|++ ++++|.+
T Consensus 268 adGlatii~glfG~~p~tty~en~g~i---a~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i 344 (428)
T PRK10720 268 ANGLSTVISGFFGSTPNTTYGENIGVM---AITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVI 344 (428)
T ss_pred hhhHHHHHHHhcCCCCcccccccccee---eecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999997666 588886633 233344 4444 6679999999999999 5677777
Q ss_pred HHHHhhhc-----ccccccchhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 487 MMRSVVEI-----EWDDMKQAIPAFVTLI------LMPMTYSVAYGLIGGIGTYIVLHLSDWA 538 (583)
Q Consensus 487 m~~~i~~I-----~~~~~~e~ipafltiv------~~plt~sI~~GIa~G~i~yvll~l~~~~ 538 (583)
...++|.+ |++++++.+...+.+. ..++..=..+|+..|.++.+++|++.+.
T Consensus 345 ~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~~~~~gi~~g~~~ai~Lnlll~~ 407 (428)
T PRK10720 345 GASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKL 407 (428)
T ss_pred HHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc
Confidence 76666555 4444545442221111 1122222348999999999999988664
No 7
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-37 Score=347.15 Aligned_cols=358 Identities=20% Similarity=0.304 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 007968 125 VATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGLRTKLAKFVP 204 (583)
Q Consensus 125 ~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~lr~~l~~~IP 204 (583)
.+...++.++.++.++++..|..+.-..|..+.+.+.++.++. +.+|+.++.+++++|++++++|++|++ +++|++|
T Consensus 51 ~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~--~~g~~~~~~~tllaGv~~i~~G~lRLG-~li~fip 127 (554)
T COG0659 51 EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLV--ETGLALAFLATLLAGVFQILLGLLRLG-RLIRFIP 127 (554)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhcc
Confidence 5566788899999999999999884345667777777776211 245999999999999999999999997 6999999
Q ss_pred hhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCchhcccccC
Q 007968 205 KPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIMCLNNRM 284 (583)
Q Consensus 205 ~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (583)
++|..|++.|||++|+..|++... |+-.........+...+ ......
T Consensus 128 ~pVl~Gf~~Giai~I~~~Ql~~~~--G~~~~~~~~~~~~~~l~-------------------------------~~~~~~ 174 (554)
T COG0659 128 RPVLIGFTAGIAILIILTQLPVLL--GLASKVSGFWAKVSALF-------------------------------TVLLTI 174 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCCccccchHHHHHHHH-------------------------------Hhcccc
Confidence 999999999999999999998873 44322111111111000 001235
Q ss_pred chHHHHHHHHHHHHHHHH--HhhccchhHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccccccccccccccc
Q 007968 285 ESHTFWLGIVGFVIIAYC--LVKNIKGAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVHVIKSTAGALS 362 (583)
Q Consensus 285 ~~p~~~lgligl~li~il--~~~~v~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP~~~~~~~~~d 362 (583)
+.++..++++++.+++.+ +.+++|++ +++++++|.++|.++.+..... ...|+ .|+ .+|++. .++++
T Consensus 175 ~~~~~~lg~~~l~il~~~~~~~~~~P~~-liaiv~~t~i~~~~~~~~~~~G-~i~~~----lp~---~~~~~~--~P~~~ 243 (554)
T COG0659 175 NLATLLLGLLTLAILLFLPRLTPRIPSP-LIALVLGTLIVWIFPLDSLRYG-EIPGS----LPS---GLPHFR--LPNVS 243 (554)
T ss_pred cHHHHHHHHHHHHHHHHccchhhhCCcH-HHHHHHHHHHHHHhcCCchhcc-cCccc----CCc---CCCccc--CCCCC
Confidence 666778888887777665 34678886 8999999999999986421111 01111 111 122221 23444
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccc-cchhhhhhh
Q 007968 363 FNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVT-TFIESSTGI 441 (583)
Q Consensus 363 ~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvT-s~~eSaagV 441 (583)
++.+. ++++..+.+.++.++|+..|..+.+++ ++++.|.||||+|||++|+++++||++|.| +|+||+.|+
T Consensus 244 ~~~~~--~l~~~al~la~lg~iesllta~~~~~~------~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~srS~~nv 315 (554)
T COG0659 244 LSLLL--ALLPYALALALLGLLESLLTAVSFDGM------TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINI 315 (554)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHhhHHHHHHHHhCCccccchhHHHHHHH
Confidence 55443 578888999999999999999998774 345889999999999999999999999999 689999999
Q ss_pred hcCcccchHHHHHHHHHH-HHHHHHHHHHhcChhhhhHHHHHHHHHHHH--Hhhh-cccccccchhhHHHHHHHHHHHHH
Q 007968 442 REGGRTGLTAITVAGYFF-LAFFFTPLLASIPAWAVGPPLILVGVLMMR--SVVE-IEWDDMKQAIPAFVTLILMPMTYS 517 (583)
Q Consensus 442 ~aGarTglaaiv~g~lfl-l~lff~Pll~~IP~aala~aLI~vG~~m~~--~i~~-I~~~~~~e~ipafltiv~~plt~s 517 (583)
++||||+++++++|++++ +.+++.|++++||.++++++++++|+-|+. .+++ ..|..+.|.+..++|++.+ ..++
T Consensus 316 ~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~t-v~~~ 394 (554)
T COG0659 316 KSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLT-VFFD 394 (554)
T ss_pred HhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHH-HHHH
Confidence 999999999999999987 456789999999999999999999999984 3444 2335677777777666654 4569
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007968 518 VAYGLIGGIGTYIVLHLSDWA 538 (583)
Q Consensus 518 I~~GIa~G~i~yvll~l~~~~ 538 (583)
+..||.+|++.+.+..+.+-.
T Consensus 395 l~~GV~vGi~ls~~~~i~r~s 415 (554)
T COG0659 395 LVIGVVVGILLACLLFIRRIS 415 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877655443
No 8
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-35 Score=319.85 Aligned_cols=388 Identities=21% Similarity=0.267 Sum_probs=285.0
Q ss_pred ccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 007968 29 FKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDS-GGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPP 107 (583)
Q Consensus 29 F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (583)
++..++..+.+|-+..|+||+++|+-..++.|.+++.+ +.+
T Consensus 6 ~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~-------------------------------------- 47 (451)
T COG2233 6 YVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLS-------------------------------------- 47 (451)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCC--------------------------------------
Confidence 44444558899999999999999999999999999876 543
Q ss_pred CCCCccchhhhhhhhHHHHHHHHHHHHHHHHHHH-----hCCcccccCCCccchhhhhhhhhhcCCCCC--cHHHHHHHH
Q 007968 108 VNPGYQNCLQKTRKDLIVATTASALIGCLIMGIF-----ANLPLALAPGMGTNAYFAYSVVGFHGSGNV--PYKSALTAI 180 (583)
Q Consensus 108 ~~~~~~~~~~~~~~~~i~AT~l~a~igtllmg~~-----a~lPi~lapgmG~na~~a~~vv~~~G~~~~--~~~~al~av 180 (583)
+|+...++++++++|+++|++|.+. +++|..++++ .+|++-.+.. + .++ +.+.+++++
T Consensus 48 ---------~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~s---Fafi~p~i~~--~-~~~g~~~~~~~G~i 112 (451)
T COG2233 48 ---------AEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSS---FAFVAPMIAI--G-GTTGDGIAALLGGI 112 (451)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEech---HHHHHHHHHH--H-hccCCchHHHHHHH
Confidence 1347899999999999999999862 3789999887 3555532222 2 223 489999999
Q ss_pred HHHHHHHHHHHHhhhhh-hhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCcccccccccc
Q 007968 181 FIEGLIFLFISALGLRT-KLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMT 259 (583)
Q Consensus 181 flsGli~illg~~~lr~-~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~ 259 (583)
+.+|+++++++... + |+.|++||.|...+..-||+.++.++++++.| + -... +
T Consensus 113 i~ag~~~~li~~~~--~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G-~-~~~~-------~--------------- 166 (451)
T COG2233 113 IAAGLVYFLISPIV--KIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGG-G-PGAA-------G--------------- 166 (451)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhC-C-CCCC-------C---------------
Confidence 99999999998753 4 89999999999999999999999999988743 1 0000 0
Q ss_pred ccCCccccCCCCCCcCchhcccccCchH-HHHHHHHHHHHHHHHHhhccc-----hhHHHHHHHHHHHHHHhcCcccccC
Q 007968 260 SINGTVSLLPGGSVSGDIMCLNNRMESH-TFWLGIVGFVIIAYCLVKNIK-----GAMIYGIVFVTAISWFRNTSVTAFP 333 (583)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~lgligl~li~il~~~~v~-----gaiLigIivgtvia~~~G~~v~~~~ 333 (583)
.+++.++ ..+++++++++++++. |..| -++|+|+++||++++++|. +|+.
T Consensus 167 ---------------------~~~~~~~~~l~la~~tl~~il~~~-~f~~g~~~~i~ILiGlv~G~~la~~~G~--vdf~ 222 (451)
T COG2233 167 ---------------------NPDFGSLENLGLALVTLLIILLIN-RFGKGFLRRIPILIGLVVGYLLALFMGM--VDFS 222 (451)
T ss_pred ---------------------CcccCchhHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHhCC--cCcc
Confidence 0123333 4567777776665543 3333 3789999999999999996 6664
Q ss_pred CCCCCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCC-ccCCchh
Q 007968 334 STESGNSAYEYFKKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGD-FEGQYFA 412 (583)
Q Consensus 334 ~~~~g~~~~~~~~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~-~~~~~r~ 412 (583)
. +.+ .+|+.+|++.+...+|||.. +..++...++.+.|++|+..++++-. +++.+ +++++|.
T Consensus 223 ~--v~~------a~w~~~P~~~~fg~~F~~~a------il~m~~v~iV~~~E~~G~i~A~~~it---g~~~~~~~~l~rg 285 (451)
T COG2233 223 G--VAE------APWFALPTPFYFGMAFDWGA------ILTMLPVAIVTIVEHTGDITATGEIT---GRDLDGKPRLRRG 285 (451)
T ss_pred c--ccc------CceeeCCcccCCCeeecHHH------HHHHHHHHHHHHHHHhhhhhhHHhHh---CCcCccCcccccc
Confidence 3 222 37999999864222566654 44567778889999999999998854 45555 4899999
Q ss_pred hhhhhHHHHHhhhcCCCccccchhhhhhhh-cCcccchHHHHHHHHHHHHHHHHH----HHHhcChhhhhHH-HHHHHHH
Q 007968 413 FMSDAASIVVGSLLGTSPVTTFIESSTGIR-EGGRTGLTAITVAGYFFLAFFFTP----LLASIPAWAVGPP-LILVGVL 486 (583)
Q Consensus 413 LiadGlaniigglfG~~PvTs~~eSaagV~-aGarTglaaiv~g~lfll~lff~P----ll~~IP~aala~a-LI~vG~~ 486 (583)
+++||++++++++||++|+|+|+||.+-++ .|-+|+......| .+++.+.+.| +++.||.+++|++ ++++|.+
T Consensus 286 ~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aa-vili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~I 364 (451)
T COG2233 286 LLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAA-VILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMI 364 (451)
T ss_pred eeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHH-HHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 999999999999999999999999998886 4555666434444 4554444444 9999999999999 7899998
Q ss_pred HHHHhhhc---cccc-ccchhhHHHHHH------HHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 007968 487 MMRSVVEI---EWDD-MKQAIPAFVTLI------LMPMTYS---------VAYGLIGGIGTYIVLHLSDW 537 (583)
Q Consensus 487 m~~~i~~I---~~~~-~~e~ipafltiv------~~plt~s---------I~~GIa~G~i~yvll~l~~~ 537 (583)
..+++|.+ +.++ +++.+...+.+. ..|-.|. ..+|+++|.++++++|+..+
T Consensus 365 a~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~~p~~~~~l~~sGia~g~i~AIvLNlll~ 434 (451)
T COG2233 365 AASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQLPAWLRPLLSSGIALGTLTAIVLNLLLP 434 (451)
T ss_pred HHHHHHHHHhcccccCccceeeehHHHHhCcchhcCchhhhhCcHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 88776644 4443 224433222222 1122232 56899999999999998754
No 9
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.9e-34 Score=323.31 Aligned_cols=356 Identities=16% Similarity=0.251 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHHHHhCCcccc-cCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCh
Q 007968 127 TTASALIGCLIMGIFANLPLAL-APGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGLRTKLAKFVPK 205 (583)
Q Consensus 127 T~l~a~igtllmg~~a~lPi~l-apgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~lr~~l~~~IP~ 205 (583)
.+.+|.+++++.++++..|..+ +|...+ +.+...++.. ++++.++.+++++|++++++|++|++ ++.|++|+
T Consensus 61 GLysa~~~~~vyal~Gss~~~~~Gp~a~~-~~~~~~~~~~-----~~~~~~~~~~~l~Gii~~l~gllrlG-~l~~fip~ 133 (568)
T PRK11660 61 GLYTAAVAGIVIALTGGSRFSVSGPTAAF-VVILYPVSQQ-----FGLAGLLVATLMSGIILILMGLARLG-RLIEYIPL 133 (568)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccChhHHH-HHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHhhh-HHHhcCcH
Confidence 4778889999999999888876 665333 2333334433 35777888999999999999999997 69999999
Q ss_pred hhhhhhhhhHHHHHHHhhcccccccCccccC-Ccchhh-hccCCCCccccccccccccCCccccCCCCCCcCchhccccc
Q 007968 206 PVRISSSAGIGLFLAFIGLQNNEGIGLVSYS-SSTLVT-IGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIMCLNNR 283 (583)
Q Consensus 206 ~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~-~~tl~~-lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (583)
+|+.|+++|+|++|+..|+++. +|+...+ +.+.+. +.. +..-.++
T Consensus 134 pVi~Gf~~g~al~I~~~Ql~~~--lG~~~~~~~~~~~~~l~~-------------------------------~~~~l~~ 180 (568)
T PRK11660 134 SVTLGFTSGIGIVIATLQIKDF--FGLQMAHVPEHYLEKVGA-------------------------------LFQALPT 180 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCccHHHHHHH-------------------------------HHHhhcc
Confidence 9999999999999999999987 4554321 111110 000 0000135
Q ss_pred CchHHHHHHHHHHHHHHHH--HhhccchhHHHHHHHHHHHHHHhcCcccccCCCCCCCc----------ccccccccccc
Q 007968 284 MESHTFWLGIVGFVIIAYC--LVKNIKGAMIYGIVFVTAISWFRNTSVTAFPSTESGNS----------AYEYFKKVVDV 351 (583)
Q Consensus 284 ~~~p~~~lgligl~li~il--~~~~v~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~----------~~~~~~~~~~l 351 (583)
.++++..++++++++++++ ..+|+|++ ++++++++++++.++.. +.+...+|.. ....|. .+
T Consensus 181 ~~~~~~~~~~~~l~lll~~~~~~~~iP~~-li~iiv~t~~~~~~~~~--~~~v~~vg~~~~~~~~~g~~~~~ip~---~~ 254 (568)
T PRK11660 181 INWGDALIGIVTLGVLILWPRLKIRLPGH-LPALLAGTAVMGVLNLL--GGHVATIGSRFHYVLADGSQGNGIPP---LL 254 (568)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcccCchH-HHHHHHHHHHHHHHhcc--CCCceeecccccccccccccccCCCC---CC
Confidence 6777888999998877776 45677887 88899999999988752 1111111110 000111 12
Q ss_pred cccc-c--------ccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHH
Q 007968 352 HVIK-S--------TAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVV 422 (583)
Q Consensus 352 P~~~-~--------~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlanii 422 (583)
|++. | .+.++||+.+. .+++..+++.++.++|++.+..+++++ ++++.|.||||+++|++|++
T Consensus 255 p~~~~p~~~~~~~~~~~~~~~~~~~--~ll~~a~~iaiv~~iesl~~~~~~~~~------~~~~~d~n~EL~a~G~aNi~ 326 (568)
T PRK11660 255 PQFVLPWNLPGADGQPFTLSWDLIR--ALLPAAFSMAMLGAIESLLCAVVLDGM------TGTKHSANSELVGQGLGNIV 326 (568)
T ss_pred CCCCCCccccccccccCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCcHHHHHHhHHHHH
Confidence 2211 0 01124554432 467778888889999998877777653 34567899999999999999
Q ss_pred hhhcCCCccccc-hhhhhhhhcCcccchHHHHHHHHHHHH-HHHHHHHHhcChhhhhHHHHHHHHHHHHH--hhhcccc-
Q 007968 423 GSLLGTSPVTTF-IESSTGIREGGRTGLTAITVAGYFFLA-FFFTPLLASIPAWAVGPPLILVGVLMMRS--VVEIEWD- 497 (583)
Q Consensus 423 gglfG~~PvTs~-~eSaagV~aGarTglaaiv~g~lfll~-lff~Pll~~IP~aala~aLI~vG~~m~~~--i~~I~~~- 497 (583)
|++||++|.+++ +||+.|+++||||+++++++|+++++. +++.|++++||.++++++++++|+.|+.. +++..|+
T Consensus 327 ~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~~~~~~ 406 (568)
T PRK11660 327 APFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVDLLRHA 406 (568)
T ss_pred HHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 999999999865 899999999999999999999998855 68999999999999999999999999843 3444343
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 498 DMKQAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLHLSDW 537 (583)
Q Consensus 498 ~~~e~ipafltiv~~plt~sI~~GIa~G~i~yvll~l~~~ 537 (583)
++.|...+..|++ +.+.+++..|+++|++.++++.+++.
T Consensus 407 ~~~d~~~~~~~~~-~~~~~~~~~gi~~Gi~~s~~~~~~~~ 445 (568)
T PRK11660 407 PKDDIIVMLLCMS-LTVLFDMVIAISVGIVLASLLFMRRI 445 (568)
T ss_pred CHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666555544 45667999999999999988766543
No 10
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=1.1e-31 Score=300.65 Aligned_cols=355 Identities=16% Similarity=0.199 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHhCCcccc-cCCCccchhhhhhhhhhcCCCC----CcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 007968 128 TASALIGCLIMGIFANLPLAL-APGMGTNAYFAYSVVGFHGSGN----VPYKSALTAIFIEGLIFLFISALGLRTKLAKF 202 (583)
Q Consensus 128 ~l~a~igtllmg~~a~lPi~l-apgmG~na~~a~~vv~~~G~~~----~~~~~al~avflsGli~illg~~~lr~~l~~~ 202 (583)
+.++.+..++.++++..|..+ +|. +..+.+..+++..++... ..++.+..+++++|++++++|++|++ ++.++
T Consensus 47 Lysa~~~~iv~alfGss~~~i~Gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG-~l~~~ 124 (563)
T TIGR00815 47 LYTSFVPPFIYALFGTSRDIAIGPV-AVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLG-FLIEF 124 (563)
T ss_pred hHHHHHHHHHhheecCCCcccCCHH-HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHH
Confidence 567889999999999988887 553 455566666676665321 23677889999999999999999997 79999
Q ss_pred cChhhhhhhhhhHHHHHHHhhcccccccCccccCC-cchh-hhccCCCCccccccccccccCCccccCCCCCCcCchhcc
Q 007968 203 VPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSS-STLV-TIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIMCL 280 (583)
Q Consensus 203 IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~-~tl~-~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 280 (583)
+|++|+.|+++|+|+.|+..|+++.. |+-..++ .... .+.. .|..
T Consensus 125 is~~Vi~Gf~~g~a~~i~~~Ql~~~~--G~~~~~~~~~~~~~~~~------------------------------~~~~- 171 (563)
T TIGR00815 125 LSHAVISGFMTGAAITIGLSQLKGLL--GISIFNTRTDTLGVVIS------------------------------TWAG- 171 (563)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCChHHHHHH------------------------------HHHH-
Confidence 99999999999999999999999884 5432111 0000 0000 0000
Q ss_pred cc---cCchHHHHHHHHHHHHHHHHH--hhcc--------chhHHHHHHHHHHHHHHhcCcccccCCCCCCCcccccccc
Q 007968 281 NN---RMESHTFWLGIVGFVIIAYCL--VKNI--------KGAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKK 347 (583)
Q Consensus 281 ~~---~~~~p~~~lgligl~li~il~--~~~v--------~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~ 347 (583)
.+ +.+.++..++++.++++.... .+|. |. .|+.+++++++++.++.+..++ ..+|+. |+
T Consensus 172 l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~-~li~vi~~~~~~~~~~~~~~~~--~~~g~i----p~- 243 (563)
T TIGR00815 172 LPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVA-PLLVVILATLAVTIGLHKKQGV--SILGHI----PS- 243 (563)
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccH-HHHHHHHHHHHHHHHccCCCCe--EEEeec----CC-
Confidence 11 236667777777765554421 2222 34 3788888888888774311111 111211 11
Q ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcC
Q 007968 348 VVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLG 427 (583)
Q Consensus 348 ~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG 427 (583)
++|.+. .+.+||+.+. .+++..+++.++.++|++.+.++++++ ++++.|.|||++++|++|+++++||
T Consensus 244 --g~p~~~--~~~~~~~~~~--~l~~~a~~ia~v~~~e~l~~a~~~~~~------~~~~~d~n~El~a~G~~N~~~~~fg 311 (563)
T TIGR00815 244 --GLSFFP--PITLDWELLP--TLAPDAIAIAIVGLIESIAIARSFARM------TGYKIDANQELVAQGIANIVGSFFS 311 (563)
T ss_pred --CCCCCC--CCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCCCCcHHHHHhhHHHHHHHHhC
Confidence 223221 2345655442 567888999999999999999998874 4567899999999999999999999
Q ss_pred CCccc-cchhhhhhhhcCcccchHHHHHHHHHH-HHHHHHHHHHhcChhhhhHHHHHHHHHHH--HHhhhcccccccchh
Q 007968 428 TSPVT-TFIESSTGIREGGRTGLTAITVAGYFF-LAFFFTPLLASIPAWAVGPPLILVGVLMM--RSVVEIEWDDMKQAI 503 (583)
Q Consensus 428 ~~PvT-s~~eSaagV~aGarTglaaiv~g~lfl-l~lff~Pll~~IP~aala~aLI~vG~~m~--~~i~~I~~~~~~e~i 503 (583)
++|.+ +++||+.|.++||||++++++++++++ +.+++.|+++++|.++++++++++++.|. +.++++.+.++.|.+
T Consensus 312 ~~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~ 391 (563)
T TIGR00815 312 CYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFV 391 (563)
T ss_pred ccCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHH
Confidence 99998 789999999999999999999999877 45778999999999999999999999975 334555445677888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 504 PAFVTLILMPMTYSVAYGLIGGIGTYIVLHLSDWA 538 (583)
Q Consensus 504 pafltiv~~plt~sI~~GIa~G~i~yvll~l~~~~ 538 (583)
..++|++.+.+ +++..|+.+|++.+++..+++..
T Consensus 392 i~~~~~~~~~~-~~~~~Gi~vGv~~s~~~~~~~~~ 425 (563)
T TIGR00815 392 VWLVTFFGVVF-TSIEIGLLVGVALSAAFLLLRIA 425 (563)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777766544 48889999999888877766543
No 11
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=6.5e-30 Score=277.15 Aligned_cols=380 Identities=16% Similarity=0.170 Sum_probs=259.0
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhhhhhcc-CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccchhh
Q 007968 39 TTELRAGTATFLTMAYILAVNASILTDS-GGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPPVNPGYQNCLQ 117 (583)
Q Consensus 39 ~~Ei~aG~~tfl~m~yil~vnp~il~~a-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (583)
++-+..|+||+++|.-..++.|.+++++ |++ +
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~-----------------------------~------------------ 40 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLP-----------------------------Q------------------ 40 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------------------------H------------------
Confidence 4678999999999988888889999987 664 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HhCCcccccCCCccchhhhhhhhhhcCCCC--CcHHHHHH----HHHHHHHHHHHH
Q 007968 118 KTRKDLIVATTASALIGCLIMGI-FANLPLALAPGMGTNAYFAYSVVGFHGSGN--VPYKSALT----AIFIEGLIFLFI 190 (583)
Q Consensus 118 ~~~~~~i~AT~l~a~igtllmg~-~a~lPi~lapgmG~na~~a~~vv~~~G~~~--~~~~~al~----avflsGli~ill 190 (583)
++...+++++.++++++|++|++ ..|+|+.++|+. +|+.-.+........ .+++..++ +++++|++++++
T Consensus 41 ~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf---~~~~~~~~i~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~l 117 (433)
T PRK11412 41 SSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGG---LWWGTILTITLGEASRGTPINDIATSLAVGIALSGVVTILI 117 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCch---HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 23688999999999999999985 578999999973 444311111111011 34667766 499999999999
Q ss_pred HHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCC
Q 007968 191 SALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPG 270 (583)
Q Consensus 191 g~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~ 270 (583)
+++++.+|++|++||.|...+..-||+.+...++++..| ....... +.
T Consensus 118 g~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G--~~~~~~~---~~--------------------------- 165 (433)
T PRK11412 118 GFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLG--LPFGIAD---PN--------------------------- 165 (433)
T ss_pred HHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcC--CCccCcc---cc---------------------------
Confidence 999988899999999999999999999999999887632 1000000 00
Q ss_pred CCCcCchhcccccCchHHHHHHHHHHHHHHHHH--hhcc-c-hhHHHHHHHHHHHH-HHhcCcccccCCCCCCCcccccc
Q 007968 271 GSVSGDIMCLNNRMESHTFWLGIVGFVIIAYCL--VKNI-K-GAMIYGIVFVTAIS-WFRNTSVTAFPSTESGNSAYEYF 345 (583)
Q Consensus 271 ~~~~~~~~~~~~~~~~p~~~lgligl~li~il~--~~~v-~-gaiLigIivgtvia-~~~G~~v~~~~~~~~g~~~~~~~ 345 (583)
++.+.....++++.+++++.+. .|++ | .++|+|+++|++++ +.+|. |+.. +++
T Consensus 166 -----------~~~~~~~~~~a~~~l~~il~~~~~~~g~~~~~svLiGiv~G~v~a~~~~g~---d~~~--v~~------ 223 (433)
T PRK11412 166 -----------GKIQLPPFGLSVAVMCLVLAMIIFLPQRIARYSLLVGTIVGWILWAFCFPS---SHSL--SGE------ 223 (433)
T ss_pred -----------cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCC---Ccch--hcc------
Confidence 0111122335555544443332 2221 2 48899999999985 46664 3321 121
Q ss_pred cccccccccccccc-cccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCC-ccCCchhhhhhhHHHHHh
Q 007968 346 KKVVDVHVIKSTAG-ALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGD-FEGQYFAFMSDAASIVVG 423 (583)
Q Consensus 346 ~~~~~lP~~~~~~~-~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~-~~~~~r~LiadGlaniig 423 (583)
.+|..+| +. .+ +||+.. +..++...++.+.|++|+..++++.. |++.+ +++++|.+.+||++++++
T Consensus 224 a~w~~~p-fG--~P~~F~~~~------il~~~~~~lv~~~e~iG~~~a~~~~~---~~~~~~~~~l~rgi~~dGi~s~la 291 (433)
T PRK11412 224 LHWQWFP-LG--SGGALEPGI------ILTAVITGLVNISNTYGAIRGTDVFY---PQQGAGNTRYRRSFVATGFMTLIT 291 (433)
T ss_pred CCceeec-CC--CCCccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCcccccchhhccHHHHHH
Confidence 1343333 11 22 366653 44556667788899999999998753 44444 679999999999999999
Q ss_pred hhcCCCccccchhhhhhhh-cCcccchHHHHHHHHHHHHHHHHH----HHHhcChhhhhHHH-HHHHHHHHHHhh---hc
Q 007968 424 SLLGTSPVTTFIESSTGIR-EGGRTGLTAITVAGYFFLAFFFTP----LLASIPAWAVGPPL-ILVGVLMMRSVV---EI 494 (583)
Q Consensus 424 glfG~~PvTs~~eSaagV~-aGarTglaaiv~g~lfll~lff~P----ll~~IP~aala~aL-I~vG~~m~~~i~---~I 494 (583)
++||++|+|+|+||++-++ .|-++|......|++++ .+.|.| +++.||.+++|+++ +++|.+...+++ +.
T Consensus 292 glfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ili-llgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~ 370 (433)
T PRK11412 292 VPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCL-LVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQI 370 (433)
T ss_pred HhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998886 35556665555555443 333334 89999999999995 777877765554 45
Q ss_pred ccccccchhh-HHHHHH---H--HH-HHHH---------HHHHHHHHHHHHHHHHHHH
Q 007968 495 EWDDMKQAIP-AFVTLI---L--MP-MTYS---------VAYGLIGGIGTYIVLHLSD 536 (583)
Q Consensus 495 ~~~~~~e~ip-afltiv---~--~p-lt~s---------I~~GIa~G~i~yvll~l~~ 536 (583)
|++++ +.+. .+-..+ . .| -.++ +.+|++.|.++++++|...
T Consensus 371 ~~~~r-n~~ivg~sl~~Glg~~~~p~~~~~~~P~~~~~~l~sgi~~g~l~AilLn~~~ 427 (433)
T PRK11412 371 TFTAR-NIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMENLI 427 (433)
T ss_pred CCCcc-cchhhHHHHHHHhhHHhCCHHHHHHChHHHHHHHcCcHHHHHHHHHHHHhhc
Confidence 66644 4332 211111 1 12 1111 4589999999999999774
No 12
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.91 E-value=2.3e-24 Score=220.60 Aligned_cols=260 Identities=22% Similarity=0.295 Sum_probs=178.8
Q ss_pred HHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccc-cCCcchhhhccCCCCccccccccccccCCccccC
Q 007968 190 ISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVS-YSSSTLVTIGACPRSSRASLAPVMTSINGTVSLL 268 (583)
Q Consensus 190 lg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv-~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~ 268 (583)
+|++|++ ++.|++|++|..|++.|+|++|+..|+++.. |+-. .+.......-
T Consensus 1 lGllrlG-~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~--G~~~~~~~~~~~~~~------------------------ 53 (280)
T PF00916_consen 1 LGLLRLG-FLVRFIPRPVISGFLAGIAILIIFSQLPNLL--GIPVVPSHEGLFSFI------------------------ 53 (280)
T ss_pred Ccccccc-HHHHHccHHHHHHHHHHHHHHHHHHHHHHHH--hcccccccccccchh------------------------
Confidence 4677885 7999999999999999999999999999884 4431 1111100000
Q ss_pred CCCCCcCchhccccc-CchHHHHHHHHHHHHHHHH--Hh--------hccchhHHHHHHHHHHHHHHhcCcccccCCCCC
Q 007968 269 PGGSVSGDIMCLNNR-MESHTFWLGIVGFVIIAYC--LV--------KNIKGAMIYGIVFVTAISWFRNTSVTAFPSTES 337 (583)
Q Consensus 269 ~~~~~~~~~~~~~~~-~~~p~~~lgligl~li~il--~~--------~~v~gaiLigIivgtvia~~~G~~v~~~~~~~~ 337 (583)
.++....++ .+.+...+++..+++.... .. +++|.. ++.+++++++++..+.+..+++ .+
T Consensus 54 ------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~-li~vv~~~~~~~~~~~~~~~v~--~~ 124 (280)
T PF00916_consen 54 ------RALFQLISTITNWPTLAIGLVALVFLLIIRLLPKRLPSRFWPPIPAP-LIVVVLGTLLSWLFLLDKYGVA--IV 124 (280)
T ss_pred ------hhhhhhhhhccchhhhhhhhHHHHHHhhhhhhhhhcccccccccccc-ceeeehhhhhhhhhhhcccccc--cc
Confidence 000000011 2444555665554444332 22 113444 7788888988888754221221 12
Q ss_pred CCcccccccccccccccccccc--cccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhh
Q 007968 338 GNSAYEYFKKVVDVHVIKSTAG--ALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMS 415 (583)
Q Consensus 338 g~~~~~~~~~~~~lP~~~~~~~--~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~Lia 415 (583)
|+. ++ .+|.+. ++ ++||+.+. ..++..+++.++.++|++.+.++++++ ++++.|.|||+++
T Consensus 125 ~~i----~~---~lp~~~--~p~~~~~~~~~~--~~~~~a~~ia~v~~~~s~~~~~~~~~~------~~~~~d~n~El~a 187 (280)
T PF00916_consen 125 GEI----PS---GLPPPS--LPSFDISWSLIL--DLLPTALAIAIVGFIESLLIAKSIAKK------TGYRIDPNQELIA 187 (280)
T ss_pred ccc----cc---cCcccc--Cccccccccccc--ccchhHHHHHHHHHHHHHHhhhhhccc------ccccCCcHHHHHH
Confidence 221 11 234332 33 45555443 356677888889999999988887653 4567799999999
Q ss_pred hhHHHHHhhhcCCCccc-cchhhhhhhhcCcccchHHHHHHHHHH-HHHHHHHHHHhcChhhhhHHHHHHHHHHH--HHh
Q 007968 416 DAASIVVGSLLGTSPVT-TFIESSTGIREGGRTGLTAITVAGYFF-LAFFFTPLLASIPAWAVGPPLILVGVLMM--RSV 491 (583)
Q Consensus 416 dGlaniigglfG~~PvT-s~~eSaagV~aGarTglaaiv~g~lfl-l~lff~Pll~~IP~aala~aLI~vG~~m~--~~i 491 (583)
+|++|+++++||++|.+ +++||+.|.++||||++++++++++.+ +.+++.|++++||.++++++++++|+.++ ..+
T Consensus 188 ~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~l~~~~~~ 267 (280)
T PF00916_consen 188 LGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGISLIDWSSL 267 (280)
T ss_pred hhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 99999999999999998 689999999999999999999999887 45678899999999999999999999975 345
Q ss_pred hhcccccccch
Q 007968 492 VEIEWDDMKQA 502 (583)
Q Consensus 492 ~~I~~~~~~e~ 502 (583)
+++...++.|+
T Consensus 268 ~~~~~~~~~d~ 278 (280)
T PF00916_consen 268 RRLWRVSKADF 278 (280)
T ss_pred HHHhcCChhhe
Confidence 55544455554
No 13
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-22 Score=231.71 Aligned_cols=358 Identities=20% Similarity=0.216 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHh-CCcccccCCCccchhhhhhhhh----hcC---CCCCcHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007968 126 ATTASALIGCLIMGIFA-NLPLALAPGMGTNAYFAYSVVG----FHG---SGNVPYKSALTAIFIEGLIFLFISALGLRT 197 (583)
Q Consensus 126 AT~l~a~igtllmg~~a-~lPi~lapgmG~na~~a~~vv~----~~G---~~~~~~~~al~avflsGli~illg~~~lr~ 197 (583)
-.+-++.++.++..+++ -.++.+|| .+..++....++. ..+ .....++.+...+|++|++|+++|++|++
T Consensus 111 yGLYssf~~~~iY~~fGtsr~isiG~-~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLG- 188 (665)
T KOG0236|consen 111 YGLYSSFFPPLIYAIFGTSRHVSIGP-FAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLG- 188 (665)
T ss_pred HHHHHHHHHHHHheeccCCCcccccH-HHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34567788888887664 46677766 2233333332222 111 01257999999999999999999999995
Q ss_pred hhhhccChhhhhhhhhhHHHHHHHhhcccccccCcc-ccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCc
Q 007968 198 KLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLV-SYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGD 276 (583)
Q Consensus 198 ~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Gii-v~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 276 (583)
++.+++|+++..|++.|.++.+...|++.. +|+- ..........-. .
T Consensus 189 fl~~~lS~~~l~GFt~gaa~~I~~sQlk~l--lGi~~~~~~~~~~~~~~------------------------------~ 236 (665)
T KOG0236|consen 189 FLVRFLSEPALSGFTTGAALHIVTSQLKVL--LGITSFPRHSGPGSIVF------------------------------I 236 (665)
T ss_pred hHHHHccHHHHhHhhhhhhhhhhHHhhHhh--ccccccCCCCCceeEEE------------------------------e
Confidence 899999999999999999999999999998 4554 211110000000 0
Q ss_pred hhcccccCc--hHHHHHHHHHHHHHHHHH--h----hccc---h-hHHHHHHHHHHHHHHhcCcccccCCCCCCCccccc
Q 007968 277 IMCLNNRME--SHTFWLGIVGFVIIAYCL--V----KNIK---G-AMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEY 344 (583)
Q Consensus 277 ~~~~~~~~~--~p~~~lgligl~li~il~--~----~~v~---g-aiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~ 344 (583)
+........ ..+..++++.+++....- . ++.+ . .-++.++++|++++.+..+....+ ..+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~-~~~~~i---- 311 (665)
T KOG0236|consen 237 VFDLLANLPKTLATLVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP-IIVGEI---- 311 (665)
T ss_pred eHHhhhcccccchhhhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCC-eeeccC----
Confidence 000000111 123445555443333221 1 1222 1 248889999999999876321111 111111
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhh
Q 007968 345 FKKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGS 424 (583)
Q Consensus 345 ~~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigg 424 (583)
++ ++|.+. .+.+++.. ..+...+.+.++.++|+++..++.+++ ++..-+.||||+|.|++|++|+
T Consensus 312 ~~---g~~~~~--lp~~~~~~----~~~~~~~~i~iva~~~~iai~k~fa~~------~~y~vd~nqELiAlG~~Ni~sS 376 (665)
T KOG0236|consen 312 PR---GFPPPS--LPPLSLTP----QVIPDAFAIAIVALLEHIAIGKSFASL------HGYKVDSNQELIALGISNILSS 376 (665)
T ss_pred CC---CCCCCC--CCChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCeeCCChHHHHHHHHHHhhh
Confidence 11 222221 22232222 345556777788899998888888764 3456678899999999999999
Q ss_pred hcCCCccc-cchhhhhhhhcCcccchHHHHHHHHHHH-HHHHHHHHHhcChhhhhHHHHHHHHHHHHH---hhhcccccc
Q 007968 425 LLGTSPVT-TFIESSTGIREGGRTGLTAITVAGYFFL-AFFFTPLLASIPAWAVGPPLILVGVLMMRS---VVEIEWDDM 499 (583)
Q Consensus 425 lfG~~PvT-s~~eSaagV~aGarTglaaiv~g~lfll-~lff~Pll~~IP~aala~aLI~vG~~m~~~---i~~I~~~~~ 499 (583)
+|+++|.| +|+||+.|.++|+||++++++.+++.++ .+++.|++++||.++++++.+..+.-|+.+ ++++...++
T Consensus 377 ff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k 456 (665)
T KOG0236|consen 377 FFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSK 456 (665)
T ss_pred hhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCH
Confidence 99999998 7999999999999999999999998874 567899999999998888877666665544 444444578
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 500 KQAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLHLSDWA 538 (583)
Q Consensus 500 ~e~ipafltiv~~plt~sI~~GIa~G~i~yvll~l~~~~ 538 (583)
.|+++...|++.+ +.+++..|+.+|+...++.-+.+-.
T Consensus 457 ~D~~~~~~t~~~~-i~~~ve~Glligv~~s~~~ii~~~~ 494 (665)
T KOG0236|consen 457 IDLLIWVVTFFTT-IFLSLEIGLLIGVAFSLFFIILRSQ 494 (665)
T ss_pred HHHHHHHHHhhee-eEehhhhhHHHHHHHHHHHHHHHhc
Confidence 8888887776654 3457899999999988877666633
No 14
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.83 E-value=3.5e-18 Score=183.13 Aligned_cols=354 Identities=18% Similarity=0.243 Sum_probs=235.6
Q ss_pred ccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 007968 29 FKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISCKFPPV 108 (583)
Q Consensus 29 F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (583)
|++++. .++..-++.|+||.++|.=.+++.|.+|++. .|.++
T Consensus 3 y~i~d~-P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~-----------m~~g~-------------------------- 44 (510)
T KOG1292|consen 3 YCINDN-PPWPEIILLGFQHYLVCLGTTVLIPFLLVPL-----------MCGGD-------------------------- 44 (510)
T ss_pred cCCCCC-CCchHHHHhccchHHHHhhhhhhhhhhhccc-----------ccCCh--------------------------
Confidence 566665 8889999999999999999999999999975 11111
Q ss_pred CCCccchhhhhh-hhHHHHHHHHHHHHHHHHHHH-hCCcccccCCCccchhhhhhhhhhc----CC--CCC---------
Q 007968 109 NPGYQNCLQKTR-KDLIVATTASALIGCLIMGIF-ANLPLALAPGMGTNAYFAYSVVGFH----GS--GNV--------- 171 (583)
Q Consensus 109 ~~~~~~~~~~~~-~~~i~AT~l~a~igtllmg~~-a~lPi~lapgmG~na~~a~~vv~~~----G~--~~~--------- 171 (583)
+++ ..+++++.+++++.|++|..+ .|+|+.++|++ ||+.-+..... .. ...
T Consensus 45 ---------~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sf---afl~p~~~i~~~~~~~~~~~~~~~~~~~~~~ 112 (510)
T KOG1292|consen 45 ---------EEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSF---AFLPPALAIISLPRFTCITTPHETDTERFQH 112 (510)
T ss_pred ---------HHHHHHHHHHHhhhccHHHHHHHHhhcccccccccce---ehhhHHHHHHhccccCCCCCcccchhHHHHH
Confidence 113 789999999999999999865 79999999974 66654332211 00 011
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCcc
Q 007968 172 PYKSALTAIFIEGLIFLFISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSR 251 (583)
Q Consensus 172 ~~~~al~avflsGli~illg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~ 251 (583)
.++..-++.++++++++++|++++-+.+.|++.|-...-..+-+|+-+.-.+.+.. +.
T Consensus 113 ~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~----------------~~------ 170 (510)
T KOG1292|consen 113 RMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL----------------GK------ 170 (510)
T ss_pred HHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh----------------hh------
Confidence 24566789999999999999999999999999999988777777765554433322 10
Q ss_pred ccccccccccCCccccCCCCCCcCchhcccccCchHHHH-HHHHHHHHHHH--HH--h-h------cc----chhHHHHH
Q 007968 252 ASLAPVMTSINGTVSLLPGGSVSGDIMCLNNRMESHTFW-LGIVGFVIIAY--CL--V-K------NI----KGAMIYGI 315 (583)
Q Consensus 252 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-lgligl~li~i--l~--~-~------~v----~gaiLigI 315 (583)
-| +++..+++.++ .+ . + +. .-+++++|
T Consensus 171 -------------------------------------~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i 213 (510)
T KOG1292|consen 171 -------------------------------------HWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAI 213 (510)
T ss_pred -------------------------------------heeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHH
Confidence 01 22222222111 12 1 1 11 12678899
Q ss_pred HHHHHHHHHhcCccccc-CCC---CCCCcccc-----cccccccccccccccc--cccccccchhHHHHHHHHHHHHHHH
Q 007968 316 VFVTAISWFRNTSVTAF-PST---ESGNSAYE-----YFKKVVDVHVIKSTAG--ALSFNGMGEGSFWEALVTFLYVDIL 384 (583)
Q Consensus 316 ivgtvia~~~G~~v~~~-~~~---~~g~~~~~-----~~~~~~~lP~~~~~~~--~~d~~~~~~~~~~~~i~t~~lv~~~ 384 (583)
.++.++++++-. .+. |.. .....|-+ ..++|+.+|-+.+ ++ +||.. ...+++...++.++
T Consensus 214 ~ivW~~~~iLT~--tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~Q-wG~P~f~~~------~~f~m~aa~~va~i 284 (510)
T KOG1292|consen 214 AIVWLYCFILTI--TGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQ-WGPPTFSAG------LVFAMMAASLVAMI 284 (510)
T ss_pred HHHHHHHHHHHh--ccccCCCccccCCcccccHhhhhccCCceeecCCCc-cCCCcccHH------HHHHHHHHHHHHHH
Confidence 998888887632 111 110 00000000 1247888887653 33 33333 34456777788999
Q ss_pred HhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCC-ccccchhhhhhhhcCcccchHH---HHHHHHHH-
Q 007968 385 DTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTS-PVTTFIESSTGIREGGRTGLTA---ITVAGYFF- 459 (583)
Q Consensus 385 et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~-PvTs~~eSaagV~aGarTglaa---iv~g~lfl- 459 (583)
|++|+..+.++.++. +.-..+.+||+...||++++++|++|+- -.|+|+||++-+ +-|++.+ +-.+..|+
T Consensus 285 ES~G~y~a~ar~~~a--~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll---~vTKVgSRrvvQ~aa~fmI 359 (510)
T KOG1292|consen 285 ESTGDYIACARLSSA--TPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLL---GVTKVGSRRVVQIAAGFMI 359 (510)
T ss_pred HhcchHHHHHHHhcC--CCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeE---eeeeeeeeeehhhhHHHHH
Confidence 999999999886531 1234568999999999999999999975 557899998776 4566643 33344343
Q ss_pred -HHH--HHHHHHHhcChhhhhHHH-HHHHHHHHHHh---hhcccccccchhhH
Q 007968 460 -LAF--FFTPLLASIPAWAVGPPL-ILVGVLMMRSV---VEIEWDDMKQAIPA 505 (583)
Q Consensus 460 -l~l--ff~Pll~~IP~aala~aL-I~vG~~m~~~i---~~I~~~~~~e~ipa 505 (583)
+.+ .|..++++||.+..|+.+ +++|+.-..++ +..|.+..++....
T Consensus 360 ~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~Il 412 (510)
T KOG1292|consen 360 FFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFIL 412 (510)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhh
Confidence 333 388899999999998885 66666554444 44455556665543
No 15
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.80 E-value=2.8e-17 Score=175.86 Aligned_cols=318 Identities=16% Similarity=0.198 Sum_probs=200.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007968 120 RKDLIVATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGLRTKL 199 (583)
Q Consensus 120 ~~~~i~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~lr~~l 199 (583)
....+++..+.++++|+++.+..|+|+.++++.=-.|... .+..+++|.++.++.+++|++.+++|++|..+|+
T Consensus 56 ~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~------~~~~~~~~~eavGAfiv~g~lilllGltG~f~rl 129 (395)
T TIGR00843 56 IIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLV------TGFPGISLNEAIAAFITAAALIFLCGITGLFAKL 129 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHH------HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999986521112221 1123378999999999999999999999999999
Q ss_pred hhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCchhc
Q 007968 200 AKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGDIMC 279 (583)
Q Consensus 200 ~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 279 (583)
+|.||+++..++.+||.+-...-.++. .
T Consensus 130 ~~~IP~~Va~amLAGIlL~f~l~~~~a----------------~------------------------------------ 157 (395)
T TIGR00843 130 LKIIPHGIAAAMLAGILFQFGLGAFAA----------------L------------------------------------ 157 (395)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHH----------------H------------------------------------
Confidence 999999999999999976443211110 0
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHhhcc-c-hhHHHHHHHHHHHHHHhcCcccccCCCCCCCcccccccccccccccccc
Q 007968 280 LNNRMESHTFWLGIVGFVIIAYCLVKNI-K-GAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVHVIKST 357 (583)
Q Consensus 280 ~~~~~~~p~~~lgligl~li~il~~~~v-~-gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP~~~~~ 357 (583)
.+.| +++ ..++..++..||. | .++++++++|+++++..|. .+.+. ... + +..|.+ +
T Consensus 158 ----~~~p--ll~--~~mll~~l~~~r~~Pr~avl~aLlvG~iva~~~G~--~~~~~--~~~-------~-l~~p~~--~ 215 (395)
T TIGR00843 158 ----DGLF--LIC--FSMLLCWLASKAFAPRYAMIAALICGIAFSFALGD--MNPTD--LDF-------K-IALPQF--I 215 (395)
T ss_pred ----HHhH--HHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC--CCccc--ccc-------c-ccccee--e
Confidence 1223 222 2223333333443 4 4689999999999999885 22211 000 0 112332 2
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCc------c
Q 007968 358 AGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSP------V 431 (583)
Q Consensus 358 ~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~P------v 431 (583)
.++||+....+ ..+.++.+.+.. .++.+++.. ...|++++.|+.+.++|++|++++.||+.+ .
T Consensus 216 ~P~fs~~a~~~-----l~lPl~~vtm~~--qnlpgiavl----~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaait 284 (395)
T TIGR00843 216 APDFSFAHSLN-----LALPLFLVSLAG--QFAPGIAAL----KAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAIT 284 (395)
T ss_pred CCCCCHHHHHH-----HHHHHHHHHHHh--cCchHHHHH----HHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHh
Confidence 45666765432 233333333322 244444432 235777888999999999999999999998 4
Q ss_pred cc-chhhhhhhhcCcccchHHHHHHHHHHHHHHH----HHHHHhcChhhhhHH--HHHHHHHHHHHhhhcccccccchhh
Q 007968 432 TT-FIESSTGIREGGRTGLTAITVAGYFFLAFFF----TPLLASIPAWAVGPP--LILVGVLMMRSVVEIEWDDMKQAIP 504 (583)
Q Consensus 432 Ts-~~eSaagV~aGarTglaaiv~g~lfll~lff----~Pll~~IP~aala~a--LI~vG~~m~~~i~~I~~~~~~e~ip 504 (583)
++ |....+. +.++|+..+++..|++.++.-+| ..+++.+|...+... |-+.|.++-+--. .++|.++--+
T Consensus 285 aAic~G~~ah-~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~~l~~--a~~~~~~r~~ 361 (395)
T TIGR00843 285 AAICMGKDAH-EDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAGNIKI--ALHEDQERDA 361 (395)
T ss_pred HHHhcCcccc-cCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhHH
Confidence 43 4444334 44788888899999988754444 458899998654433 4445554432111 2233333344
Q ss_pred HHHHHHHHH--H-HH---HHHHHHHHHHHHHHH
Q 007968 505 AFVTLILMP--M-TY---SVAYGLIGGIGTYIV 531 (583)
Q Consensus 505 afltiv~~p--l-t~---sI~~GIa~G~i~yvl 531 (583)
+.+|+++.- + .+ +=-.|+..|.+.|.+
T Consensus 362 a~~tflvtaSg~~~~gigaafWgl~~G~~~~~~ 394 (395)
T TIGR00843 362 ALIAFLATASGLHFLGIGSAFWGLCAGGLAYFI 394 (395)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHHHHh
Confidence 555555421 0 01 223688888777654
No 16
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.46 E-value=5e-11 Score=126.47 Aligned_cols=316 Identities=18% Similarity=0.273 Sum_probs=193.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCccccc---CCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhh
Q 007968 119 TRKDLIVATTASALIGCLIMGIFANLPLALA---PGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGL 195 (583)
Q Consensus 119 ~~~~~i~AT~l~a~igtllmg~~a~lPi~la---pgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~l 195 (583)
+..+-+.+-.+..++.++..++..|.|+..+ ||. ++.. +. . .+++|+++.++-+++|++.+++|++|.
T Consensus 39 q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGa---AlL~-~~---~--~~~~~~eavGAfl~~~~Li~l~G~tg~ 109 (378)
T PF03594_consen 39 QIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGA---ALLA-TS---L--PGYSFAEAVGAFLVAGALILLLGVTGL 109 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHH---HHHH-Hh---c--cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788999999999999999999986 662 3332 11 1 237999999999999999999999999
Q ss_pred hhhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcC
Q 007968 196 RTKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSG 275 (583)
Q Consensus 196 r~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 275 (583)
.+|++|.||+++..++.+|+-+- .+++-. ..+
T Consensus 110 ~~rl~~~IP~~ia~AMLAGvLl~---f~l~~f-------------~a~-------------------------------- 141 (378)
T PF03594_consen 110 FGRLMRRIPPPIASAMLAGVLLP---FGLAAF-------------TAL-------------------------------- 141 (378)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHH---HHHHHH-------------HHH--------------------------------
Confidence 99999999999999999998542 222211 000
Q ss_pred chhcccccCchHHHHHHHHHHHHHHHHHhhc-cc-hhHHHHHHHHHHHHHHhcCcccccCCCCCCCcccccccccccccc
Q 007968 276 DIMCLNNRMESHTFWLGIVGFVIIAYCLVKN-IK-GAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVHV 353 (583)
Q Consensus 276 ~~~~~~~~~~~p~~~lgligl~li~il~~~~-v~-gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP~ 353 (583)
-++|.. .+..+..++..|| .| -+++.+++.+.++++..|. .+.+.. + ..+|+
T Consensus 142 --------~~~P~l----~~~ml~~~l~~~r~~pr~av~~al~~g~~~a~~~g~--~~~~~~-----------~-~~~~~ 195 (378)
T PF03594_consen 142 --------QADPLL----VGPMLAVFLLARRFSPRYAVLAALVAGVAVAALTGQ--LHPSAL-----------Q-LSLAH 195 (378)
T ss_pred --------HhHHHH----HHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhcCC--CCcccc-----------c-cccce
Confidence 123322 1222333333333 22 4678888888888888775 222110 1 12333
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccc-
Q 007968 354 IKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVT- 432 (583)
Q Consensus 354 ~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvT- 432 (583)
+..+.++||++.+.+. .+.++++.+.. -.+.+++- ++.+|-++..|+-+..-|+++++.+.||+.++.
T Consensus 196 p~~~~P~Fs~~a~v~l-----alPL~ivtmas--QnlpG~aV----L~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nl 264 (378)
T PF03594_consen 196 PVFTTPEFSWSALVSL-----ALPLFIVTMAS--QNLPGIAV----LRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNL 264 (378)
T ss_pred eEEECCcccHHHHHHH-----HHHHHHHHHHh--cchHHHHH----HHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHH
Confidence 3334667888875432 33333333321 12333332 233577889999999999999999999999887
Q ss_pred cchhhh--hhhhcCc--ccch-HHHHHHHHHHHHHHH----HHHHHhcChhhhhHH--HHHHHHHHHHHhhhcccccccc
Q 007968 433 TFIESS--TGIREGG--RTGL-TAITVAGYFFLAFFF----TPLLASIPAWAVGPP--LILVGVLMMRSVVEIEWDDMKQ 501 (583)
Q Consensus 433 s~~eSa--agV~aGa--rTgl-aaiv~g~lfll~lff----~Pll~~IP~aala~a--LI~vG~~m~~~i~~I~~~~~~e 501 (583)
+-+-++ .+-+++. +-|+ +++..|++.++.-.| ..++...|...+... |-+.|.+.- .+ +-.++|.++
T Consensus 265 AaitaAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~~-sl-~~A~~~~~~ 342 (378)
T PF03594_consen 265 AAITAAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLGG-SL-QTAFSDEKY 342 (378)
T ss_pred HHHHHHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HH-HHHhcCcch
Confidence 333333 2223332 3344 678888887754434 348888997643322 334444432 11 112334333
Q ss_pred hhhHHHHHHHHH--HH-H---HHHHHHHHHHHHHH
Q 007968 502 AIPAFVTLILMP--MT-Y---SVAYGLIGGIGTYI 530 (583)
Q Consensus 502 ~ipafltiv~~p--lt-~---sI~~GIa~G~i~yv 530 (583)
-.++++|+++.- ++ + +--.|+.+|.+++.
T Consensus 343 r~aAlvtFlvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 343 REAALVTFLVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred hHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 345555655421 00 1 22367888877764
No 17
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=1.9e-07 Score=97.97 Aligned_cols=318 Identities=18% Similarity=0.240 Sum_probs=188.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCccccc---CCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhh
Q 007968 120 RKDLIVATTASALIGCLIMGIFANLPLALA---PGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGLR 196 (583)
Q Consensus 120 ~~~~i~AT~l~a~igtllmg~~a~lPi~la---pgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~lr 196 (583)
..+-+++-.+.-++.|+.-.+..|.|+..+ ||. +. ++.+. +++++.++.++-+++|.+.++.|++|..
T Consensus 55 ~aSwl~al~l~mGv~ti~Ls~~yR~Pv~~aWSTPG~---al----l~asl--~g~s~~eaVGAfiVt~~li~l~G~~~~l 125 (402)
T COG3135 55 IASWLTALGLAMGVSTLTLSLRYRVPVLTAWSTPGA---AL----LVASL--GGLSFAEAVGAFIVTGALIILCGLTGPL 125 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeeeecCccH---HH----HHhcc--CCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 456677778889999999999999999985 762 11 22221 3489999999999999999999999999
Q ss_pred hhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCCCCcCc
Q 007968 197 TKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGGSVSGD 276 (583)
Q Consensus 197 ~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 276 (583)
.++++.||+++..++.+||= ...+++-. . .+
T Consensus 126 ~rl~~~IP~sla~AmlAGIL---L~F~l~a~---~----------a~--------------------------------- 156 (402)
T COG3135 126 TRLMRIIPPSLAAAMLAGIL---LRFGLKAF---K----------AL--------------------------------- 156 (402)
T ss_pred HHHHHhCChHHHHHHHHHHH---HHHHHHHH---h----------cc---------------------------------
Confidence 99999999999999999983 33344321 0 00
Q ss_pred hhcccccCchHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHhcCcccccCCCCCCCccccccccccccccc
Q 007968 277 IMCLNNRMESHTFWLGIVGFVIIAYCLVKNI--KGAMIYGIVFVTAISWFRNTSVTAFPSTESGNSAYEYFKKVVDVHVI 354 (583)
Q Consensus 277 ~~~~~~~~~~p~~~lgligl~li~il~~~~v--~gaiLigIivgtvia~~~G~~v~~~~~~~~g~~~~~~~~~~~~lP~~ 354 (583)
-.+|.+.+ ..+..+++.|.+ +.+++..++++..++...|.. +.. . +....+.|++
T Consensus 157 -------~~~p~l~l----pmv~~~ll~r~f~pr~aV~aalvvgv~va~~~G~~----~~~--~------~~~~~~~p~~ 213 (402)
T COG3135 157 -------PTQPLLVL----PMVLAYLLARVFAPRYAVIAALVVGVLVAALLGDL----HTA--L------VALEISTPTW 213 (402)
T ss_pred -------CCChHHHH----HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHhCcc----ccc--c------cccccCccee
Confidence 01232211 122233333433 346788888999999888851 110 0 0111234443
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccccc
Q 007968 355 KSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVTTF 434 (583)
Q Consensus 355 ~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvTs~ 434 (583)
- .++||+..+++ ..+.++++.+..- ++-+++ .++.+|-++..+-.+.+-|+.+...+.||+..++--
T Consensus 214 v--~P~Fs~~A~l~-----lalPL~lvtmasQ--N~pGiA----vLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLa 280 (402)
T COG3135 214 V--TPEFSFAAMLS-----LALPLFLVTMASQ--NLPGIA----VLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLA 280 (402)
T ss_pred e--CCcccHHHHHH-----HhHHHHHHHHHhc--cCccce----eehhcCCCCCCchHHHHhHHHHHHhcccccceecHH
Confidence 2 45677765433 3344444432211 111121 355678888889999999999999999999988733
Q ss_pred hhhhhhhhcC------cccchHHHHHHHHHHHHHHHHH----HHHhcChhhhhHH--HHHHHHHHH---HHhhhcccccc
Q 007968 435 IESSTGIREG------GRTGLTAITVAGYFFLAFFFTP----LLASIPAWAVGPP--LILVGVLMM---RSVVEIEWDDM 499 (583)
Q Consensus 435 ~eSaagV~aG------arTglaaiv~g~lfll~lff~P----ll~~IP~aala~a--LI~vG~~m~---~~i~~I~~~~~ 499 (583)
.-|++-.... .|-=.++++.|++.++.-.|.+ ++...|...+... |-+.|-.+. ..++ |-+++
T Consensus 281 AItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~~~l~~A~~--~~~~R 358 (402)
T COG3135 281 AITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLGNSLQAALK--DERER 358 (402)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHhc--Ccccc
Confidence 3333333221 2333577888887765544443 7778887533221 333344432 1222 11223
Q ss_pred cchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 007968 500 KQAIPAFVTLILMPMTY---SVAYGLIGGIGTYIVLH 533 (583)
Q Consensus 500 ~e~ipafltiv~~plt~---sI~~GIa~G~i~yvll~ 533 (583)
+-++..|+++.--.-.+ +--.|+.+|...+.+.+
T Consensus 359 ~aAlvtF~VTaSG~tl~GIgaafWGLvaG~~~~~L~~ 395 (402)
T COG3135 359 EAALVTFLVTASGLTLFGIGAAFWGLVAGLLVLALLN 395 (402)
T ss_pred hhhhhheeehhccceeecccHHHHHHHHHHHHHHHHh
Confidence 23334443332100011 22367777777766554
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=98.30 E-value=0.00021 Score=84.24 Aligned_cols=341 Identities=15% Similarity=0.136 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhh---hhhcCCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007968 125 VATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSV---VGFHGSGNVPYK-SALTAIFIEGLIFLFISALGLRTKLA 200 (583)
Q Consensus 125 ~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~v---v~~~G~~~~~~~-~al~avflsGli~illg~~~lr~~l~ 200 (583)
.=+++++++++++.+++++-|+.+--..|-...|-+++ +...+ +.|- .-....+.+.++.++++.+.. ..++
T Consensus 404 ~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~---~~yl~~~~WigiW~~~~~~lla~~~~-s~lv 479 (900)
T TIGR00834 404 SELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNG---LEYLVGRVWIGLWLVLLVLLLVATEG-SFLV 479 (900)
T ss_pred HHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 34678899999999999999999955566666665444 33433 3432 244567888889999998887 5789
Q ss_pred hccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcc-hhhhccCCCCccccccccccccCCcccc-------CCCCC
Q 007968 201 KFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSST-LVTIGACPRSSRASLAPVMTSINGTVSL-------LPGGS 272 (583)
Q Consensus 201 ~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~t-l~~lg~~~~~~~~~~~p~~~~~~~~~~~-------~~~~~ 272 (583)
|++.+----.+.+=|+++-++-+++.. ..+--.++.. ......|-. | .+.|..... ..+++
T Consensus 480 ryiTRFTeEiFa~lIs~IFI~eai~~L--~~~f~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~ 548 (900)
T TIGR00834 480 RYISRFTQEIFSFLISLIFIYETFSKL--IKIFQEHPLQVFYNTLFCVP-------P--KPQGPSVSALLEKDCSKLGGT 548 (900)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCcccccccccccc-------c--ccccccccccccccccccccc
Confidence 999998888888888877666666542 0110000000 000000000 0 000000000 00000
Q ss_pred CcCchhccc-ccCchHHHHHHHHHHHHHHHHHh-hc-------cc-----hhHHHHHHHHHHHHHHhcCcccccCCCCCC
Q 007968 273 VSGDIMCLN-NRMESHTFWLGIVGFVIIAYCLV-KN-------IK-----GAMIYGIVFVTAISWFRNTSVTAFPSTESG 338 (583)
Q Consensus 273 ~~~~~~~~~-~~~~~p~~~lgligl~li~il~~-~~-------v~-----gaiLigIivgtvia~~~G~~v~~~~~~~~g 338 (583)
.....|-. .+..-..+++.+.++.+...+.. |+ ++ -++.++|++-+.+.+.++. ++.+.-.+.
T Consensus 549 -~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~--v~~~kl~Vp 625 (900)
T TIGR00834 549 -LGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGD--TYTQKLSVP 625 (900)
T ss_pred -cccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhcc--CcccccCCC
Confidence 00001100 00011122333333333333321 11 11 2567888888888887662 222211010
Q ss_pred C-cccccc--cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhh
Q 007968 339 N-SAYEYF--KKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMS 415 (583)
Q Consensus 339 ~-~~~~~~--~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~Lia 415 (583)
. -.++.+ .+|+ ++.+.. ...+.+...+ .++++++ .+.+.-++|+--|..=+.++...+ .+....+..++.
T Consensus 626 ~~f~pt~p~~R~W~-i~p~~~-~~~~p~w~~~-~A~iPAl-ll~ILiFmD~nIts~iv~~~e~kL---kKgsgyH~Dlll 698 (900)
T TIGR00834 626 SGLKVTNPSARGWF-IPPLGE-NRPFPWWMMF-AAALPAL-LVFILIFMEQQITTLIVSKKERKL---KKGSGFHLDLLL 698 (900)
T ss_pred CCcCCCCCCCCCeE-Eccccc-cccccHHHHH-HHHHHHH-HHHHHHHHHhhhHHHHhcCccccC---CCCcccchHHHH
Confidence 0 000011 1233 111100 0000110000 1223332 223334777744443222211111 223456888999
Q ss_pred hhHHHHHhhhcCCCccc-cchhhhhhhhc----------Ccc--------cchHHHHHHHHHHHHHHHHHHHHhcChhhh
Q 007968 416 DAASIVVGSLLGTSPVT-TFIESSTGIRE----------GGR--------TGLTAITVAGYFFLAFFFTPLLASIPAWAV 476 (583)
Q Consensus 416 dGlaniigglfG~~PvT-s~~eSaagV~a----------Gar--------Tglaaiv~g~lfll~lff~Pll~~IP~aal 476 (583)
-|+-|.++|+||-++.+ +.++|...+++ |-+ +|+|++++++++.+++++.|++..||.+|+
T Consensus 699 lg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv~~~PvL~~IP~aVL 778 (900)
T TIGR00834 699 VVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSILMEPILKRIPLAVL 778 (900)
T ss_pred HHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 99999999999988665 44566544332 211 788999999988788899999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 007968 477 GPPLILVGVLMMRS 490 (583)
Q Consensus 477 a~aLI~vG~~m~~~ 490 (583)
.|+..+.|+.-+.+
T Consensus 779 ~GvFlYMGv~SL~G 792 (900)
T TIGR00834 779 FGIFLYMGVTSLSG 792 (900)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999876644
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.012 Score=68.65 Aligned_cols=333 Identities=16% Similarity=0.155 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCCCccchhhh---hhhhhhcCCCCCcH-HHHHHHHHHHHHHHHHHHHhhhhhh
Q 007968 123 LIVATTASALIGCLIMGIFANLPLALAPGMGTNAYFA---YSVVGFHGSGNVPY-KSALTAIFIEGLIFLFISALGLRTK 198 (583)
Q Consensus 123 ~i~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a---~~vv~~~G~~~~~~-~~al~avflsGli~illg~~~lr~~ 198 (583)
-+.=+++++++++++.+++++-|+-+-...|-..+|= |.++..++ +.| +.-...++...++.++++.+.. ..
T Consensus 393 ~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~---~dyl~~r~wVglW~~~l~illaa~~a-s~ 468 (876)
T KOG1172|consen 393 GVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNG---LDYLAFRAWVGLWTAFLLILLAATNA-SS 468 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCC---CchhhHHHHHHHHHHHHHHHHHHhhh-hH
Confidence 3455788999999999999999998844455555553 33344444 332 2245677888899999999987 47
Q ss_pred hhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCccccccccccccCCccccCCCC-CCcCch
Q 007968 199 LAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPVMTSINGTVSLLPGG-SVSGDI 277 (583)
Q Consensus 199 l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~ 277 (583)
+++++-+.---.+.+-|.++-+.=+++.. +++--..+. .....+ .+ ++.+..+.+ +.+...
T Consensus 469 lv~~~TRfteEiF~~LIs~iFi~eai~kl--~~i~~~~~~---~~~~~~------------~~-~~~~~~~~~~~~~~~~ 530 (876)
T KOG1172|consen 469 LVKYITRFTEEIFGLLISLIFIYEAIKKL--IKIFKGLPI---EFDSKP------------NP-GADWSGPECESVSGTL 530 (876)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHhhcCcc---cccccC------------Cc-ccccccccccccCccc
Confidence 99999998888888888776666555522 011100000 000000 00 000000000 000000
Q ss_pred hcccccCch--HHHHHHHHHHHHHHHHH-hhcc-------c-----hhHHHHHHHHHHHHHHhcC-cccccCCCCCCCcc
Q 007968 278 MCLNNRMES--HTFWLGIVGFVIIAYCL-VKNI-------K-----GAMIYGIVFVTAISWFRNT-SVTAFPSTESGNSA 341 (583)
Q Consensus 278 ~~~~~~~~~--p~~~lgligl~li~il~-~~~v-------~-----gaiLigIivgtvia~~~G~-~v~~~~~~~~g~~~ 341 (583)
.+.....+. ..+++.+.++.+...+. .|+. + -++.++|++-+.+.++.+. ...+++... +. .
T Consensus 531 ~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~vp~-~~-~ 608 (876)
T KOG1172|consen 531 LGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLPVPS-VF-P 608 (876)
T ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccccCc-CC-C
Confidence 000000111 11122222222222221 1111 1 2567788888888887762 111221100 00 0
Q ss_pred cc-cc-cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhh-ccccCCCCCccCCchhhhhhhH
Q 007968 342 YE-YF-KKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARF-AGFSDLNGDFEGQYFAFMSDAA 418 (583)
Q Consensus 342 ~~-~~-~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~-ag~~d~~g~~~~~~r~LiadGl 418 (583)
.+ .+ .+|+-.|. ++..+...+ .++++++ .+.+.-|+|+--+.. ++++ ...+ .+-...+-.|+--|+
T Consensus 609 ~t~~~~rgw~v~~~-----~~~P~~~~~-~A~ipal-ll~iLiFmDqqIts~-iv~rke~kL---KKgsgyH~DLlllgi 677 (876)
T KOG1172|consen 609 PTWPFDRGWFVPPF-----GKNPWWYVF-AALIPAL-LLTILIFMDQQITAV-IVNRKENKL---KKGSGYHLDLLLLGI 677 (876)
T ss_pred CCCcccCCeeeCCC-----CCCCHHHHH-HHHHHHH-HHHHHHHhcchHHHH-HhhcccccC---CCCcchhHHHHHHHH
Confidence 00 01 13332221 112222111 1233332 223334778754433 2222 1111 233466788999999
Q ss_pred HHHHhhhcCCCccc-cchhhhhhhhcCc-----------------c-cchHHHHHHHHHHHHHHHHHHHHhcChhhhhHH
Q 007968 419 SIVVGSLLGTSPVT-TFIESSTGIREGG-----------------R-TGLTAITVAGYFFLAFFFTPLLASIPAWAVGPP 479 (583)
Q Consensus 419 aniigglfG~~PvT-s~~eSaagV~aGa-----------------r-Tglaaiv~g~lfll~lff~Pll~~IP~aala~a 479 (583)
-|.++|+||=++.. +..+|...+++=+ | .|+|+++.+++..++.++.|++..||.+++-|.
T Consensus 678 l~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls~~~~pvL~~IP~~VL~Gv 757 (876)
T KOG1172|consen 678 LTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLSVLLLPVLKLIPMPVLYGV 757 (876)
T ss_pred HHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999998775 5678876554211 1 578999999988888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 007968 480 LILVGVLMMRS 490 (583)
Q Consensus 480 LI~vG~~m~~~ 490 (583)
..+.|+--+.+
T Consensus 758 FlYMgv~SL~G 768 (876)
T KOG1172|consen 758 FLYMGVSSLPG 768 (876)
T ss_pred HHHHhhccCCc
Confidence 88887765543
No 20
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=96.89 E-value=0.00041 Score=77.58 Aligned_cols=346 Identities=16% Similarity=0.198 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCccchhhh---hhhhhhcCCCCCcHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Q 007968 124 IVATTASALIGCLIMGIFANLPLALAPGMGTNAYFA---YSVVGFHGSGNVPYKSA-LTAIFIEGLIFLFISALGLRTKL 199 (583)
Q Consensus 124 i~AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a---~~vv~~~G~~~~~~~~a-l~avflsGli~illg~~~lr~~l 199 (583)
..=+++++++++++.+++++-|+.+--..|-...|- |.++...+ ++|-.. ....+..+++.++++.+.. ..+
T Consensus 67 v~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~---~~fl~~~~wig~w~~~~~~~~~~~~~-s~l 142 (510)
T PF00955_consen 67 VMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCKSYG---LDFLPFRAWIGIWTAIFLLVLAAFNA-SFL 142 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccc-ccc
Confidence 456778899999999999999987743345544443 33333333 333222 2456777888888888876 468
Q ss_pred hhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCc--chhhhccC----CCCc-cccccc----------ccccc-
Q 007968 200 AKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSS--TLVTIGAC----PRSS-RASLAP----------VMTSI- 261 (583)
Q Consensus 200 ~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~--tl~~lg~~----~~~~-~~~~~p----------~~~~~- 261 (583)
+|++-+.--..+..=|.++-.+-+++.. ..+-...+- .......| +... .....+ +....
T Consensus 143 v~~~TRfTeEiF~~lIs~iFi~ea~~~l--~~~~~~~p~~~~~~~~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (510)
T PF00955_consen 143 VRYITRFTEEIFALLISIIFIYEAIKKL--VKIFKKYPLNSDYVTQYSCQCTPPENSNNSTLNPWTNLNNGSINWSNLSN 220 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888877788878877666666543 122111110 00000000 0000 000000 00000
Q ss_pred CCccccCCCCCCcCchhcccccCchH-----HHHHHHHHHHHHHHHHh-h-------ccc-----hhHHHHHHHHHHHHH
Q 007968 262 NGTVSLLPGGSVSGDIMCLNNRMESH-----TFWLGIVGFVIIAYCLV-K-------NIK-----GAMIYGIVFVTAISW 323 (583)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~lgligl~li~il~~-~-------~v~-----gaiLigIivgtvia~ 323 (583)
+.|... ++ ...+ -.|-...-..| .+++.+.++.+...+.. | +++ -++.++|++-+.+.+
T Consensus 221 ~~c~~~-~g-~~~g-~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~~vR~~isDf~v~iaI~~~~~~~~ 297 (510)
T PF00955_consen 221 SECENI-NG-ELVG-TSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPRWVREIISDFGVPIAILIMTLVDY 297 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cc-cccc-cccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 000000 00 0000 00000000111 12233333333322211 1 111 255778888787777
Q ss_pred HhcCcccc--cCCCCCCCcccccc--cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccc
Q 007968 324 FRNTSVTA--FPSTESGNSAYEYF--KKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGF 399 (583)
Q Consensus 324 ~~G~~v~~--~~~~~~g~~~~~~~--~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~ 399 (583)
..+.++.+ +|+.. .++.+ .+|+--| +....+...+ .++.++ +.+.+.-++|.--+..=+.++...
T Consensus 298 ~~~~~~~kL~vp~~f----~pt~~~~r~W~v~p-----~~~~p~w~~~-aA~~pa-lll~iL~F~DqnIts~ivn~~e~k 366 (510)
T PF00955_consen 298 LFGVDTPKLNVPSSF----KPTSPGKRGWFVNP-----FGSLPWWAIF-AAIIPA-LLLTILFFMDQNITSLIVNRPENK 366 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcccccccCCCCCC----CCCCCCCCCeecCc-----ccCCCHHHHH-HHHHHH-HHHHHHHHHHHhHhHHHhCChhhc
Confidence 66532211 12110 00001 1232111 1111111100 012222 111222356653222211111111
Q ss_pred cCCCCCccCCchhhhhhhHHHHHhhhcCCCccc-cchhhhhhhhc----------Ccc--------cchHHHHHHHHHHH
Q 007968 400 SDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVT-TFIESSTGIRE----------GGR--------TGLTAITVAGYFFL 460 (583)
Q Consensus 400 ~d~~g~~~~~~r~LiadGlaniigglfG~~PvT-s~~eSaagV~a----------Gar--------Tglaaiv~g~lfll 460 (583)
+ .|....+..|...|+-|.++|++|-+... +.++|...+++ |-+ +|+|+++.++++.+
T Consensus 367 L---kKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~EqRvT~l~~~~Ligl 443 (510)
T PF00955_consen 367 L---KKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQRVTGLLVHLLIGL 443 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c---CCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEecccHHHHHHHHHH
Confidence 1 22345677789999999999999987665 56777654432 212 67888888888778
Q ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHhh
Q 007968 461 AFFFTPLLASIPAWAVGPPLILVGVLMMRSVV 492 (583)
Q Consensus 461 ~lff~Pll~~IP~aala~aLI~vG~~m~~~i~ 492 (583)
++++.|++..||.+++.|...+.|+.-+.+..
T Consensus 444 s~~l~pvL~~IP~~VL~GvFlymG~~sL~gnq 475 (510)
T PF00955_consen 444 SLFLLPVLKLIPMPVLYGVFLYMGVTSLSGNQ 475 (510)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHhheeeeecCcc
Confidence 88999999999999999999999988776543
No 21
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=85.52 E-value=38 Score=37.12 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhcc
Q 007968 177 LTAIFIEGLIFLFISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQ 225 (583)
Q Consensus 177 l~avflsGli~illg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~ 225 (583)
++..++.|++=++++++|.++++++.-.+-|+.|...-.|..=...|++
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~ 193 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIK 193 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHH
Confidence 3445778999999999999999999999999988776666443334433
No 22
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=71.51 E-value=18 Score=40.52 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=44.1
Q ss_pred HHHHhcChhhhhHHHHHHHHHHHHH-hhh----------cccccccchhhHHHHHHHHHH----------HHHHHHHHHH
Q 007968 466 PLLASIPAWAVGPPLILVGVLMMRS-VVE----------IEWDDMKQAIPAFVTLILMPM----------TYSVAYGLIG 524 (583)
Q Consensus 466 Pll~~IP~aala~aLI~vG~~m~~~-i~~----------I~~~~~~e~ipafltiv~~pl----------t~sI~~GIa~ 524 (583)
-+...+|+.++|+++.++|.-++.. ++. -+|.+..+...+++|++.+.+ .++|..|++.
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~g~~~~i~ILiGlv~ 208 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGKGFLRRIPILIGLVV 208 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4666899999999988888877632 221 134445555555555554332 3567888888
Q ss_pred HHHHHHHHH
Q 007968 525 GIGTYIVLH 533 (583)
Q Consensus 525 G~i~yvll~ 533 (583)
|-+.+..+-
T Consensus 209 G~~la~~~G 217 (451)
T COG2233 209 GYLLALFMG 217 (451)
T ss_pred HHHHHHHhC
Confidence 888877665
No 23
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=65.87 E-value=59 Score=35.80 Aligned_cols=127 Identities=16% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCchhhhhhhHHHHHhhhcCCCc--cc-------cchhhhhhhhc--CcccchH-HHHHHHHHHH-HHHHHH-----HHH
Q 007968 408 GQYFAFMSDAASIVVGSLLGTSP--VT-------TFIESSTGIRE--GGRTGLT-AITVAGYFFL-AFFFTP-----LLA 469 (583)
Q Consensus 408 ~~~r~LiadGlaniigglfG~~P--vT-------s~~eSaagV~a--GarTgla-aiv~g~lfll-~lff~P-----ll~ 469 (583)
=....+++-|+++++=++....| .- +|.--...+.. |-.+-+. .++.|+++.+ ..++.. +..
T Consensus 42 li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~ 121 (415)
T TIGR00801 42 LVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMK 121 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 34566778888888877665544 11 11110101111 1111122 2444544442 333233 378
Q ss_pred hcChhhhhHHHHHHHHHHH-HHhhhc----------ccccccchhhHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 007968 470 SIPAWAVGPPLILVGVLMM-RSVVEI----------EWDDMKQAIPAFVTLILMPMT----------YSVAYGLIGGIGT 528 (583)
Q Consensus 470 ~IP~aala~aLI~vG~~m~-~~i~~I----------~~~~~~e~ipafltiv~~plt----------~sI~~GIa~G~i~ 528 (583)
.+|..++++++..+|+.+. ..++.. +|.+.......+++++.+.+. +++..|+++|.+.
T Consensus 122 ~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~g~~~~~aiLigiv~g~i~ 201 (415)
T TIGR00801 122 LFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGKGFLKSISILIGILVGYIL 201 (415)
T ss_pred cCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 8999999999888888775 233322 222333344444444433221 4677788888877
Q ss_pred HHHHHH
Q 007968 529 YIVLHL 534 (583)
Q Consensus 529 yvll~l 534 (583)
+..+..
T Consensus 202 a~~lg~ 207 (415)
T TIGR00801 202 ALFMGI 207 (415)
T ss_pred HHHcCC
Confidence 776553
No 24
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=49.74 E-value=1.8e+02 Score=31.72 Aligned_cols=128 Identities=21% Similarity=0.253 Sum_probs=66.5
Q ss_pred cCCchhhhhhhHHHHHhhh-cCC-Cccc-cchhhh---hhhhcC----cccch----HHH-HHHHHHHH-HHHHH--HHH
Q 007968 407 EGQYFAFMSDAASIVVGSL-LGT-SPVT-TFIESS---TGIREG----GRTGL----TAI-TVAGYFFL-AFFFT--PLL 468 (583)
Q Consensus 407 ~~~~r~LiadGlaniiggl-fG~-~PvT-s~~eSa---agV~aG----arTgl----aai-v~g~lfll-~lff~--Pll 468 (583)
.-....+++-|+++++=++ +|. .|.- ..+-+. ..+..| ...++ .++ +.|+++++ ..... -+.
T Consensus 37 ~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~ 116 (389)
T PF00860_consen 37 ALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLR 116 (389)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhcccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHH
Confidence 4457888999999999999 654 2442 111111 111122 23333 223 33333332 22222 478
Q ss_pred HhcChhhhhHHHHHHHHHHH-HHhhhc--ccc--------cccchhhHHHHHHHHHH----------HHHHHHHHHHHHH
Q 007968 469 ASIPAWAVGPPLILVGVLMM-RSVVEI--EWD--------DMKQAIPAFVTLILMPM----------TYSVAYGLIGGIG 527 (583)
Q Consensus 469 ~~IP~aala~aLI~vG~~m~-~~i~~I--~~~--------~~~e~ipafltiv~~pl----------t~sI~~GIa~G~i 527 (583)
..+|..+.+++++.+|..+. ..+++. .|. +..+..+++++++.+.+ .+++..|++.|.+
T Consensus 117 ~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ailigi~~g~i 196 (389)
T PF00860_consen 117 RLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLVGDGKNLGLAVLTLLFILLLSLFLKGFLRKGAILIGIIAGWI 196 (389)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHH
T ss_pred HHhChhheEeeEeeehhhhhhhHhhccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhhhhhhh
Confidence 99999999999999998875 333333 221 11222334444433221 3678899999999
Q ss_pred HHHHHHH
Q 007968 528 TYIVLHL 534 (583)
Q Consensus 528 ~yvll~l 534 (583)
.|.++..
T Consensus 197 ~~~~~g~ 203 (389)
T PF00860_consen 197 VAAILGV 203 (389)
T ss_dssp HHHHHHH
T ss_pred hhhcccc
Confidence 9888773
No 25
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=48.58 E-value=1.5e+02 Score=32.37 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=45.1
Q ss_pred HHHHHHHH-HHHHHHHHHHhcChhhhhHHHHHHHHHHHH-Hhhhc-------ccccccchhhHHHHHHHHHH--------
Q 007968 452 ITVAGYFF-LAFFFTPLLASIPAWAVGPPLILVGVLMMR-SVVEI-------EWDDMKQAIPAFVTLILMPM-------- 514 (583)
Q Consensus 452 iv~g~lfl-l~lff~Pll~~IP~aala~aLI~vG~~m~~-~i~~I-------~~~~~~e~ipafltiv~~pl-------- 514 (583)
++.|++++ +...+.-+...+|..++|..+..+|..... .++.. ++.+..+....+++++.+.+
T Consensus 90 ~v~Gii~illg~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~~~~~~~l~l~~l~~~il~~~~~~~~ 169 (406)
T TIGR03173 90 IVAGLFVILLAPFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFGSPQNLGLALLTLVIILLLNRFGKGF 169 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45555444 333344588999998888887788876653 22221 23333333444333333221
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 007968 515 --TYSVAYGLIGGIGTYIVLH 533 (583)
Q Consensus 515 --t~sI~~GIa~G~i~yvll~ 533 (583)
.+++..|++.|.+.+..+.
T Consensus 170 ~~~~aiLi~ivvg~iva~~~g 190 (406)
T TIGR03173 170 LRSIAVLLGLVVGTIVAAALG 190 (406)
T ss_pred HHHhHHHHHHHHHHHHHHHhc
Confidence 1356677777777766554
No 26
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=43.24 E-value=25 Score=30.31 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhCCcccc-cC
Q 007968 128 TASALIGCLIMGIFANLPLAL-AP 150 (583)
Q Consensus 128 ~l~a~igtllmg~~a~lPi~l-ap 150 (583)
+.++.++.++.++++..|... +|
T Consensus 49 Ly~a~~~~liyalfG~s~~~~~Gp 72 (84)
T PF13792_consen 49 LYAAIIPPLIYALFGSSRHMIVGP 72 (84)
T ss_pred eHHHHHHHHHHhhccCCCccccCh
Confidence 456778888888888877765 45
No 27
>PRK10720 uracil transporter; Provisional
Probab=43.09 E-value=57 Score=36.19 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhccc
Q 007968 181 FIEGLIFLFISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQN 226 (583)
Q Consensus 181 flsGli~illg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~ 226 (583)
.++|++.++++++.-...+...+|++|..|.....=-.+...|+|.
T Consensus 306 ~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~ 351 (428)
T PRK10720 306 GGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRV 351 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888999887444578999999999988775555566666654
No 28
>PF02308 MgtC: MgtC family; InterPro: IPR003416 The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologues is not known, but it is thought that MgtC may act as an accessory protein for MgtB, thus mediating magnesium influx into the cytosol. Also included in this family are the Bacillus subtilis SapB protein and several hypothetical proteins.; GO: 0016020 membrane
Probab=42.45 E-value=2.8e+02 Score=25.68 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007968 518 VAYGLIGGIGTYIVLHLSDWAEILSRRVG 546 (583)
Q Consensus 518 I~~GIa~G~i~yvll~l~~~~~~~~~~~~ 546 (583)
...+++.++++.+++..-++..++++|.+
T Consensus 105 ~~~A~~~~v~~~~iL~~k~~l~~~i~~~~ 133 (134)
T PF02308_consen 105 YVLAVAAAVLVLIILALKRPLHRFIKRLR 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45788888888888888888888887754
No 29
>PRK11660 putative transporter; Provisional
Probab=41.49 E-value=2.2e+02 Score=32.76 Aligned_cols=150 Identities=12% Similarity=0.116 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcCCCccc-cchhhhhhhhcCcccch
Q 007968 371 FWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLGTSPVT-TFIESSTGIREGGRTGL 449 (583)
Q Consensus 371 ~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG~~PvT-s~~eSaagV~aGarTgl 449 (583)
++..+.+++....+|.. ..+ ..|.|+|. .-.=+++-++.+.|++-++.-.+ +-+...+|.+. .-+++
T Consensus 290 iv~~iesl~~~~~~~~~------~~~--~~d~n~EL---~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT-~la~i 357 (568)
T PRK11660 290 MLGAIESLLCAVVLDGM------TGT--KHSANSEL---VGQGLGNIVAPFFGGITATAAIARSAANVRAGATS-PISAV 357 (568)
T ss_pred HHHHHHHHHHHHHHHHh------cCC--CCCCcHHH---HHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCc-HHHHH
Confidence 34444454445555543 223 13544443 23336788899999998876544 43333334443 23444
Q ss_pred -HHHHHHHH--HHH-HHHHHHHHHhcChhhhhHHHHHHHH-HHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 007968 450 -TAITVAGY--FFL-AFFFTPLLASIPAWAVGPPLILVGV-LMMRSVVEIEWDDMKQAIPAFVTLILMPMTYSVAYGLIG 524 (583)
Q Consensus 450 -aaiv~g~l--fll-~lff~Pll~~IP~aala~aLI~vG~-~m~~~i~~I~~~~~~e~ipafltiv~~plt~sI~~GIa~ 524 (583)
++++..+. ++. .+-..|....=+.-...+.-+ +-. ....-.++.+++|...++..++++++..+..++..|+++
T Consensus 358 v~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~ 436 (568)
T PRK11660 358 IHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNM-SEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVL 436 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh-hhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444433 332 233455433333323333322 222 233445677888888899888888888999999999999
Q ss_pred HHHHHHHHH
Q 007968 525 GIGTYIVLH 533 (583)
Q Consensus 525 G~i~yvll~ 533 (583)
.++.++.-.
T Consensus 437 s~~~~~~~~ 445 (568)
T PRK11660 437 ASLLFMRRI 445 (568)
T ss_pred HHHHHHHHH
Confidence 999877543
No 30
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=35.86 E-value=4.8e+02 Score=29.95 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCCCccCCchhhhhhhHHHHHhhhcC-CCcc
Q 007968 371 FWEALVTFLYVDILDTTGTLYSMARFAGFSDLNGDFEGQYFAFMSDAASIVVGSLLG-TSPV 431 (583)
Q Consensus 371 ~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g~~~~~~r~LiadGlaniigglfG-~~Pv 431 (583)
.++....+++..+.|.+|.+..+.+.-..+ -++++.+--+++=+.++.+=|.-| +.|+
T Consensus 66 ~~Ii~~Ai~ly~~~~~tGa~~~I~~~l~~i---s~D~r~q~lli~~~Fg~flEgaaGFGtpv 124 (522)
T PF02652_consen 66 LWIIFGAILLYNLMVETGAFDRIRQWLASI---SPDRRVQVLLIAFGFGAFLEGAAGFGTPV 124 (522)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 456667777888888888888776642111 233455555567777776655555 4554
No 31
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=33.15 E-value=1.3e+02 Score=33.69 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccChhhhhhhhhhHHHHHHHhhccc
Q 007968 179 AIFIEGLIFLFISALGLRTKLAKFVPKPVRISSSAGIGLFLAFIGLQN 226 (583)
Q Consensus 179 avflsGli~illg~~~lr~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~ 226 (583)
....+|++.+++|++.-...+...||.+|..|...-.=-.++..|++.
T Consensus 319 v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~ 366 (433)
T PRK11412 319 SFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVF 366 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999998555678999999999887766555566666654
No 32
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=32.50 E-value=2.8e+02 Score=31.87 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=76.1
Q ss_pred cCCCCCccCCchhhhhhhHHHHHhhhcCCCcc--ccchhhhhhhhcCcccch-HHHHHHHHHH-HH--HHHHH--HHHhc
Q 007968 400 SDLNGDFEGQYFAFMSDAASIVVGSLLGTSPV--TTFIESSTGIREGGRTGL-TAITVAGYFF-LA--FFFTP--LLASI 471 (583)
Q Consensus 400 ~d~~g~~~~~~r~LiadGlaniigglfG~~Pv--Ts~~eSaagV~aGarTgl-aaiv~g~lfl-l~--lff~P--ll~~I 471 (583)
.|.|+|.. -.=+++-++...|++=++... |+....+ |.+. .-+++ ++++..+.++ +. +-..| .++.+
T Consensus 291 ~d~n~El~---a~G~~N~~~~~fg~~p~~~s~srs~~~~~~-G~~t-~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~i 365 (563)
T TIGR00815 291 IDANQELV---AQGIANIVGSFFSCYPATGSLSRTAVNAKA-GCRT-QLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAI 365 (563)
T ss_pred CCCcHHHH---HhhHHHHHHHHhCccCCCCcchHHHHHHhc-CCcc-hHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 46655533 223568888899988776444 3333332 3332 23343 4544444333 22 22345 44444
Q ss_pred ChhhhhHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 472 PAWAVGPPLILVGVLMMRSVVEIEWDDMKQAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLH 533 (583)
Q Consensus 472 P~aala~aLI~vG~~m~~~i~~I~~~~~~e~ipafltiv~~plt~sI~~GIa~G~i~yvll~ 533 (583)
-..+.-. +.-+.-+..+.+.++.|....+..++++++..+..++..|++++++.++.-.
T Consensus 366 li~~~~~---l~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~Gi~vGv~~s~~~~~~~~ 424 (563)
T TIGR00815 366 IISAVRG---LIDYKELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAFLLLRI 424 (563)
T ss_pred HHHHHhc---ccCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322222 3345555667788888988888888888888999999999999999888654
No 33
>COG4392 Predicted membrane protein [Function unknown]
Probab=30.71 E-value=1.9e+02 Score=26.27 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=41.1
Q ss_pred HHHhcChhhhhHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 467 LLASIPAWAVGPPLILVGVLMMRSVVEIEWDDMKQAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLHLS 535 (583)
Q Consensus 467 ll~~IP~aala~aLI~vG~~m~~~i~~I~~~~~~e~ipafltiv~~plt~sI~~GIa~G~i~yvll~l~ 535 (583)
.++.+|.++ -.||+.=.+.+-.+=.+..|+.. ..+...+++++.-+|-+....+..|+.++.+++.+
T Consensus 40 ~L~fvP~a~-ltAL~~p~vl~~~~g~~~s~~~p-~llA~lvav~la~lTrnll~~il~Gm~~~~~lr~~ 106 (107)
T COG4392 40 FLSFVPVAI-LTALIAPDVLMPHGGLDPSWNNP-YLLAGLVAVALAILTRNLLATILVGMASFALLRLF 106 (107)
T ss_pred HHhhccHHH-HHHHHhhhHhccCCCcchhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788643 34444444443321112233332 23445666677778999999999999999988765
No 34
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=30.14 E-value=4.6e+02 Score=29.18 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=37.8
Q ss_pred HHHhcChhhhhHHHHHHHHHHHH-HhhhcccccccchhhHHHHHHHHH--------H--HHHHHHHHHHHHHHHHHH
Q 007968 467 LLASIPAWAVGPPLILVGVLMMR-SVVEIEWDDMKQAIPAFVTLILMP--------M--TYSVAYGLIGGIGTYIVL 532 (583)
Q Consensus 467 ll~~IP~aala~aLI~vG~~m~~-~i~~I~~~~~~e~ipafltiv~~p--------l--t~sI~~GIa~G~i~yvll 532 (583)
+...+|..++|.+.+++|+-.+. .++...-.+..+ ..++++++.+. + .+++..|+++|.+.+.++
T Consensus 138 l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~~~~~-~~al~tl~~i~l~~l~~~~~l~~~avLiGivvG~iva~~l 213 (429)
T TIGR03616 138 IERLMPPVVTGAVVMAIGLNLAPIAVKSVSASGFDS-WMAVLTILCIGAVAVFTRGMLQRLLILVGLIAAYLAYFIL 213 (429)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHhcccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999888888763 333221111111 12222222211 1 456778888888877654
No 35
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=30.00 E-value=1.1e+02 Score=35.67 Aligned_cols=65 Identities=20% Similarity=0.410 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHh------CCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007968 127 TTASALIGCLIMGIFA------NLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISA 192 (583)
Q Consensus 127 T~l~a~igtllmg~~a------~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~ 192 (583)
+.+...++.+++..+. +.|..+=||+ ...||.-+...-.|...-+|+.|+...|+.|+++.++..
T Consensus 333 s~ig~~i~~~il~~~~~~~~~~~~~~iiIPg~-ip~FF~gatagVfgN~~GG~rgAii~~fv~G~i~~~~~a 403 (602)
T PRK09548 333 GAIGQFLAVGILIAFNLKGIDVDAPIIIIPGF-IPMFFSNATIGVFANHFGGWKAVMKICFVMGIIEVLGSA 403 (602)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCceEEeccc-HhhhccCCeeEEEeccccchHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555431 3466677876 334444333333443444799999999999999877754
No 36
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=29.58 E-value=4e+02 Score=30.76 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=32.1
Q ss_pred hhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007968 491 VVEIEWDDMKQAIPAFVTLILMPMTYSVAYGLIGGIGTYIVLHLSDWAEILSRR 544 (583)
Q Consensus 491 i~~I~~~~~~e~ipafltiv~~plt~sI~~GIa~G~i~yvll~l~~~~~~~~~~ 544 (583)
.++..|.|....+..++++++..+..+|..|++++.+..+ .+..+.-.....+
T Consensus 372 ~~~~~~~e~~v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i-~r~s~~~~~~~~~ 424 (554)
T COG0659 372 LRKLPRGELLVLLTTALLTVFFDLVIGVVVGILLACLLFI-RRISRPSIVVLGR 424 (554)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhchHHHhhcc
Confidence 5556666666666666666666677777777777766554 4444544444443
No 37
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=29.07 E-value=3.5e+02 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhcccccCccCCCccccc
Q 007968 533 HLSDWAEILSRRVGIGKRSKANNPSLKEE 561 (583)
Q Consensus 533 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (583)
-....+.++.+++++.+.+++..|.+|.-
T Consensus 254 l~~Pl~ir~~r~v~~~~~~~~~~p~l~~~ 282 (303)
T COG1575 254 LALPLAIRAARPVRQNQVPATLVPMLKNT 282 (303)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 34457788899999999888888888753
No 38
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=28.44 E-value=5.6e+02 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=24.2
Q ss_pred cCCchhhhhhhHHHHHhhhcCCCccccchhh
Q 007968 407 EGQYFAFMSDAASIVVGSLLGTSPVTTFIES 437 (583)
Q Consensus 407 ~~~~r~LiadGlaniigglfG~~PvTs~~eS 437 (583)
-+.+++++--++.+++|+++.+..++..+++
T Consensus 19 l~~~~A~ila~i~~~lGa~l~G~~V~~ti~~ 49 (326)
T PF01384_consen 19 LTPRQALILAAIFNFLGALLFGTAVAETIGK 49 (326)
T ss_pred cCHHHHHHHHHHHHHhHHHHhhHHHHHHHHh
Confidence 3557889999999999999988777754443
No 39
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=26.78 E-value=1.2e+02 Score=34.12 Aligned_cols=63 Identities=21% Similarity=0.509 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007968 127 TTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISA 192 (583)
Q Consensus 127 T~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~ 192 (583)
+.+...++.++++.+ + |..+-||+ ...||.-+...-+|...-+|+.|+...|+.|+++..+..
T Consensus 326 s~iggii~m~il~~~-~-~~vIIPg~-vp~FF~gataGVfgNatGG~RGAiig~fv~Glii~flpa 388 (463)
T PRK12996 326 SFLGGLVGLFLLGQM-K-LVLILPGV-VPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPV 388 (463)
T ss_pred HHHHHHHHHHHHHhc-C-ceEEeccc-HHHhcCCCeeEEEeccccchHHHHHHHHHHHHHHHHHHH
Confidence 334444445555432 3 55556875 334444333333444445799999999999999777654
No 40
>PRK12997 PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=25.33 E-value=1.5e+02 Score=33.52 Aligned_cols=65 Identities=25% Similarity=0.516 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 007968 126 ATTASALIGCLIMGIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISA 192 (583)
Q Consensus 126 AT~l~a~igtllmg~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~ 192 (583)
.+.+...++.+++.. .+.|..+-||+ ...||.-+...-.|...-+|+.|+...|+.|+++.++..
T Consensus 343 ~s~ig~~i~~~i~~~-~~~~~~iiPg~-v~~FF~g~tagVfgN~~GG~rgAii~~fv~G~i~~~~~~ 407 (466)
T PRK12997 343 FGTIGGLIGMGILIV-FKSPIVIIPGF-VPLFFDGATAGVFGNARGGWRGAIIGSFLSGILITFLPA 407 (466)
T ss_pred HHHHHHHHHHHHHHH-hCCceEEcccc-HhhhcCCCeeEEEecccccHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555543 34567677886 334444333333343344799999999999999877754
No 41
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=25.04 E-value=5.9e+02 Score=26.93 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=14.6
Q ss_pred hcChhhhhHHHHHHHHHHH-HHhhhc
Q 007968 470 SIPAWAVGPPLILVGVLMM-RSVVEI 494 (583)
Q Consensus 470 ~IP~aala~aLI~vG~~m~-~~i~~I 494 (583)
..+....+.++.++|..++ .++.++
T Consensus 114 ~~~l~~ig~il~~IG~ILlgi~~yrl 139 (285)
T PF06157_consen 114 GLILLLIGAILAFIGYILLGIGLYRL 139 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556778888776 344455
No 42
>PF15050 SCIMP: SCIMP protein
Probab=24.55 E-value=61 Score=29.96 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCccCCCc
Q 007968 519 AYGLIGGIGTYIVLHLSDWAEILSRRVGIGKRSKANNPS 557 (583)
Q Consensus 519 ~~GIa~G~i~yvll~l~~~~~~~~~~~~~~~~~~~~~~~ 557 (583)
..++.+|+|+|+ ++||...+=++....|+.|+||..
T Consensus 18 ~vS~~lglIlyC---vcR~~lRqGkkweiakp~k~~~rd 53 (133)
T PF15050_consen 18 LVSVVLGLILYC---VCRWQLRQGKKWEIAKPLKQKQRD 53 (133)
T ss_pred HHHHHHHHHHHH---HHHHHHHccccceeccchhhhccc
Confidence 457788999998 457776666677777888887764
No 43
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=23.00 E-value=9.2e+02 Score=25.78 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=36.5
Q ss_pred cCCchhhhhhhHHHHHhhhcCCCccccc-hhhhhhhhcCcccchHHHHHHHH-HHHHHHHHHHHHh-cChhhhhHHHHHH
Q 007968 407 EGQYFAFMSDAASIVVGSLLGTSPVTTF-IESSTGIREGGRTGLTAITVAGY-FFLAFFFTPLLAS-IPAWAVGPPLILV 483 (583)
Q Consensus 407 ~~~~r~LiadGlaniigglfG~~PvTs~-~eSaagV~aGarTglaaiv~g~l-fll~lff~Pll~~-IP~aala~aLI~v 483 (583)
|...++|.-+|+=.++.++.|-.=+-++ -|--- +++++++.+- .++.+.+.-++.. +=.+.+++.|.++
T Consensus 126 p~vg~eL~~~~~~Al~~alv~I~iYV~~RFe~~~--------a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiI 197 (305)
T COG0341 126 PTVGKELARQGLLALLLALVGILIYVFFRFEWRF--------ALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTII 197 (305)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhheeeehHH--------HHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHe
Confidence 4566777777777777777654433322 23211 1122222211 1122223333332 3345778888888
Q ss_pred HHHH
Q 007968 484 GVLM 487 (583)
Q Consensus 484 G~~m 487 (583)
|+-+
T Consensus 198 GYSv 201 (305)
T COG0341 198 GYSV 201 (305)
T ss_pred eecc
Confidence 9866
No 44
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.44 E-value=70 Score=30.78 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHhCCcccccCCCccchhhhhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhh
Q 007968 139 GIFANLPLALAPGMGTNAYFAYSVVGFHGSGNVPYKSALTAIFIEGLIFLFISALGL 195 (583)
Q Consensus 139 g~~a~lPi~lapgmG~na~~a~~vv~~~G~~~~~~~~al~avflsGli~illg~~~l 195 (583)
+++.+.|.++| +..|+.+-.+...+ .|..--.++++..++++.+|++|+
T Consensus 66 ~~~~GiP~~lG----~~~f~~~y~l~~~~----~~dvP~~~~~~~S~~~Fg~gllGi 114 (153)
T PF11947_consen 66 AVFVGIPTALG----VAVFVVFYYLKSRQ----IVDVPPWAVLLVSLVFFGLGLLGI 114 (153)
T ss_pred HHHhchHHHHH----HHHHHHHHHHHhcc----ccccCchHHHHHHHHHHHHHHHhh
Confidence 34566776643 33444433332222 244444566666677777766544
No 45
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.43 E-value=4.3e+02 Score=28.86 Aligned_cols=34 Identities=21% Similarity=0.016 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCccCCCccccccc
Q 007968 527 GTYIVLHLSDWAEILSRRVGIGKRSKANNPSLKEEAT 563 (583)
Q Consensus 527 i~yvll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
+.++++-+.++.++.-+-.++.||.|+ +.|||..
T Consensus 201 ~~~~via~~D~~~q~~~~~k~lkMSkq---EVKdE~K 234 (358)
T PRK13109 201 IATIVLVALDLVWARFHWRRSLRMTKQ---EIKDEHK 234 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHH
Confidence 445556667777777777777777775 3566653
No 46
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=20.80 E-value=4.3e+02 Score=27.69 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhcccc
Q 007968 480 LILVGVLMMRSVVEIEWD 497 (583)
Q Consensus 480 LI~vG~~m~~~i~~I~~~ 497 (583)
+...++++..++++++.|
T Consensus 172 l~~~~iL~~Nn~rD~e~D 189 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDD 189 (285)
T ss_pred HHHHHHHHhcCCccchhH
Confidence 456677778888888654
No 47
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=20.71 E-value=4.9e+02 Score=28.18 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccCccCCCccccccc
Q 007968 522 LIGGIGTYIVLHLSDWAEILSRRVGIGKRSKANNPSLKEEAT 563 (583)
Q Consensus 522 Ia~G~i~yvll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
+..-.+.++++-+.++.++.-+-.++.||.|+ +.|+|..
T Consensus 186 ~~~~~~~~~via~~D~~~qr~~~~k~lkMskq---EvKdE~K 224 (342)
T TIGR01404 186 ILVCLGFFLVVGLADFAFQRYLFMKDLKMSKD---EVKREYK 224 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Confidence 33444555666777788777777777778775 3566643
Done!