Query 007968
Match_columns 583
No_of_seqs 258 out of 1858
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:55:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 7.3E-46 2.5E-50 400.7 34.8 378 24-536 1-406 (429)
2 3qe7_A Uracil permease; uracil 71.4 44 0.0015 35.6 13.5 124 411-534 45-201 (429)
3 1bts_A BAND 3 anion transport 20.0 65 0.0022 20.9 2.2 20 127-146 6-25 (26)
4 3dl8_C SECE; RECA-type ATPase 12.3 3.5E+02 0.012 20.8 5.2 19 489-507 13-31 (65)
5 2jp3_A FXYD domain-containing 9.5 2.6E+02 0.0091 22.1 3.5 16 538-553 34-49 (67)
6 2knc_A Integrin alpha-IIB; tra 9.5 6E+02 0.021 19.2 5.4 18 520-537 17-34 (54)
7 2knc_B Integrin beta-3; transm 8.7 4.9E+02 0.017 21.0 5.0 20 548-568 54-73 (79)
8 3din_D Preprotein translocase 7.9 5.1E+02 0.018 19.8 4.6 18 489-506 13-30 (65)
9 1q90_G Cytochrome B6F complex 7.2 6.2E+02 0.021 17.7 4.1 22 518-539 5-26 (37)
10 2l2t_A Receptor tyrosine-prote 6.2 6.5E+02 0.022 18.2 4.1 20 516-535 10-29 (44)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=7.3e-46 Score=400.70 Aligned_cols=378 Identities=17% Similarity=0.167 Sum_probs=284.1
Q ss_pred hhhhcccccccCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 007968 24 RAGKRFKLAERNTSFTTELRAGTATFLTMAYILAVNASILTDSGGTCSASDCIPLCSDPNIALPDCTGPSYRIVQPDISC 103 (583)
Q Consensus 24 ~~~~~F~~~~r~t~~~~Ei~aG~~tfl~m~yil~vnp~il~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (583)
++||+|+++||. +++||+++|+|||++|+|++++||.|+ |+| +
T Consensus 1 ~~~~~~~~~~~~-~~~~~i~~GlQh~lam~~~~v~~Plil---Gl~-----------------------------~---- 43 (429)
T 3qe7_A 1 MTRRAIGVSERP-PLLQTIPLSLQHLFAMFGATVLVPVLF---HIN-----------------------------P---- 43 (429)
T ss_dssp ---CCBCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHTT---TSC-----------------------------H----
T ss_pred CCCcccCcccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHh---CCC-----------------------------H----
Confidence 478999999995 799999999999999999999999999 664 1
Q ss_pred CCCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhCCcc--cccCCCccchhhhh-hhhhhcCCCCCcHHHHHHHH
Q 007968 104 KFPPVNPGYQNCLQKTRKDLIVATTASALIGCLIMGIFANLPL--ALAPGMGTNAYFAY-SVVGFHGSGNVPYKSALTAI 180 (583)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~AT~l~a~igtllmg~~a~lPi--~lapgmG~na~~a~-~vv~~~G~~~~~~~~al~av 180 (583)
.+|+++|+++|++|++++|.|+ .++++ .+|++- ..+.. ++|+.+++++
T Consensus 44 ---------------------~~~l~~agi~Tllq~~~~~~~lP~~~G~s---fafi~~~~~i~~-----~g~~~~~gav 94 (429)
T 3qe7_A 44 ---------------------ATVLLFNGIGTLLYLFICKGKIPAYLGSS---FAFISPVLLLLP-----LGYEVALGGF 94 (429)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTTCCCCCEEEC---GGGHHHHHHHGG-----GCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCCCCCeEecCh---HHHHHHHHHHHh-----cCHHHHHHHH
Confidence 3799999999999999876444 44443 233221 22221 5799999999
Q ss_pred HHHHHHHHHHHHh--hhh-hhhhhccChhhhhhhhhhHHHHHHHhhcccccccCccccCCcchhhhccCCCCcccccccc
Q 007968 181 FIEGLIFLFISAL--GLR-TKLAKFVPKPVRISSSAGIGLFLAFIGLQNNEGIGLVSYSSSTLVTIGACPRSSRASLAPV 257 (583)
Q Consensus 181 flsGli~illg~~--~lr-~~l~~~IP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~tl~~lg~~~~~~~~~~~p~ 257 (583)
+++|+++++++++ |+| +|++|+|||.|...+.+.||+.++.+++++..| . ... +
T Consensus 95 i~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~--~--~~~------~------------- 151 (429)
T 3qe7_A 95 IMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGL--L--PAE------G------------- 151 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTS--S--CBT------T-------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccc--c--CCC------C-------------
Confidence 9999999999998 777 799999999998777888888777777665411 0 000 0
Q ss_pred ccccCCccccCCCCCCcCchhcccccCchHHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHhcCccccc
Q 007968 258 MTSINGTVSLLPGGSVSGDIMCLNNRMESHTFWLGIVGFVIIAYCLVKNIKG-----AMIYGIVFVTAISWFRNTSVTAF 332 (583)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lgligl~li~il~~~~v~g-----aiLigIivgtvia~~~G~~v~~~ 332 (583)
+..+.+..+++++++++++++ .|+.|+ ++|+|++++|++++.+|. .++
T Consensus 152 ------------------------~~~~~~~~~la~~tl~iii~~-~~~~kg~~~~~aiLigivvg~~~a~~~G~--~d~ 204 (429)
T 3qe7_A 152 ------------------------QTPDSKTIIISITTLAVTVLG-SVLFRGFLAIIPILIGVLVGYALSFAMGI--VDT 204 (429)
T ss_dssp ------------------------BCCCHHHHHHHHHHHHHHHHH-HHSSSTTTTTHHHHHHHHHHHHHHHHHHH--TTS
T ss_pred ------------------------ccccHHHHHHHHHHHHHHHHH-HHHhcccchhhHHHHHHHHHHHHHHHhcC--CCc
Confidence 013445677999998887666 456665 899999999999999986 444
Q ss_pred CCCCCCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhHhHHHHHhhhccccCCCC-CccCCch
Q 007968 333 PSTESGNSAYEYFKKVVDVHVIKSTAGALSFNGMGEGSFWEALVTFLYVDILDTTGTLYSMARFAGFSDLNG-DFEGQYF 411 (583)
Q Consensus 333 ~~~~~g~~~~~~~~~~~~lP~~~~~~~~~d~~~~~~~~~~~~i~t~~lv~~~et~Gtl~ava~~ag~~d~~g-~~~~~~r 411 (583)
+. +++ .+|+++|++. .++||++ .+..++++++++++|++|+..++++.. |++. ++++.||
T Consensus 205 ~~--v~~------a~~~~lP~~~--~P~f~~~------~i~~i~~i~lV~~~Eslg~~~av~~~~---g~~~~~~~~~~r 265 (429)
T 3qe7_A 205 TP--IIN------AHWFALPTLY--TPRFEWF------AILTILPAALVVIAEHVGHLVVTANIV---KKDLLRDPGLHR 265 (429)
T ss_dssp SH--HHH------SCSSCCCCCC--CCCCCHH------HHHHHTHHHHHHHHHHHHHHHHHHHHH---TSCTCCCCCHHH
T ss_pred cc--ccc------cccccccCCC--CCcccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCCcch
Confidence 32 111 2577888753 4566654 355678889999999999999999865 4555 5789999
Q ss_pred hhhhhhHHHHHhhhcCCCccccchhhhhhhh-cCcccchHHHHHHHHHHHHHH---HHHHHHhcChhhhhHH-HHHHHHH
Q 007968 412 AFMSDAASIVVGSLLGTSPVTTFIESSTGIR-EGGRTGLTAITVAGYFFLAFF---FTPLLASIPAWAVGPP-LILVGVL 486 (583)
Q Consensus 412 ~LiadGlaniigglfG~~PvTs~~eSaagV~-aGarTglaaiv~g~lfll~lf---f~Pll~~IP~aala~a-LI~vG~~ 486 (583)
++++||++|+++++||++|+|+|+||++.++ .|.|||++.+.+|+++++..+ +.++++.||.+++|++ ++++|.+
T Consensus 266 ~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i 345 (429)
T 3qe7_A 266 SMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVI 345 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987765 799999988888886654332 5679999999999998 5677887
Q ss_pred HHHHhh-----hcccccccchhhHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007968 487 MMRSVV-----EIEWDDMKQAIPAFVTLIL-M-----PMTYSVAYGLIGGIGTYIVLHLSD 536 (583)
Q Consensus 487 m~~~i~-----~I~~~~~~e~ipafltiv~-~-----plt~sI~~GIa~G~i~yvll~l~~ 536 (583)
...++| ++|++++++.+...+.+.+ + |+..-..+|++.|.++.+++|+..
T Consensus 346 ~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~~~~gi~~~~~~ai~ln~~l 406 (429)
T 3qe7_A 346 GASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIF 406 (429)
T ss_dssp HHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhccCcHHHHHHHHHHHHHHh
Confidence 765554 4577766676654443332 1 111112479999999999999885
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=71.39 E-value=44 Score=35.56 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=67.5
Q ss_pred hhhhhhhHHHHHhhhcCCCccc-------cchhhhhhhh-cCcccchHHH-HHHHHHHH-HHHHH-----HHHHhcChhh
Q 007968 411 FAFMSDAASIVVGSLLGTSPVT-------TFIESSTGIR-EGGRTGLTAI-TVAGYFFL-AFFFT-----PLLASIPAWA 475 (583)
Q Consensus 411 r~LiadGlaniigglfG~~PvT-------s~~eSaagV~-aGarTglaai-v~g~lfll-~lff~-----Pll~~IP~aa 475 (583)
..+++-|+++++=+++++.+.- +|+--...+. .|=++-+.++ +.|+++++ ..++. -+...+|..+
T Consensus 45 ~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~Ppvv 124 (429)
T 3qe7_A 45 TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAA 124 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCee
Confidence 5788888888888877544322 2221111111 1111222333 44444433 23322 4889999999
Q ss_pred hhHHHHHHHHHHHHH-hhhc-------ccccccchhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 007968 476 VGPPLILVGVLMMRS-VVEI-------EWDDMKQAIPAFVTLILMPMT----------YSVAYGLIGGIGTYIVLHL 534 (583)
Q Consensus 476 la~aLI~vG~~m~~~-i~~I-------~~~~~~e~ipafltiv~~plt----------~sI~~GIa~G~i~yvll~l 534 (583)
+|+.+.++|...... ++.. ++.+..+...++++++.+.+. +++..|+++|.+.+..+..
T Consensus 125 iG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~ 201 (429)
T 3qe7_A 125 MGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGI 201 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcC
Confidence 999999999887632 2221 122223444555555543321 3677788888777766553
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=19.96 E-value=65 Score=20.93 Aligned_cols=20 Identities=5% Similarity=0.190 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhCCcc
Q 007968 127 TTASALIGCLIMGIFANLPL 146 (583)
Q Consensus 127 T~l~a~igtllmg~~a~lPi 146 (583)
+++++++++++.++++.-|+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 56788889999999888875
No 4
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=12.32 E-value=3.5e+02 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=1.8
Q ss_pred HHhhhcccccccchhhHHH
Q 007968 489 RSVVEIEWDDMKQAIPAFV 507 (583)
Q Consensus 489 ~~i~~I~~~~~~e~ipafl 507 (583)
.+++++.|-+++|..-..+
T Consensus 13 ~ElkKV~WPtr~e~~~~T~ 31 (65)
T 3dl8_C 13 DELKRVVWPSRELVVKATI 31 (65)
T ss_dssp ---------------CHHH
T ss_pred HHHhcccCcCHHHHHHHHH
Confidence 4678899999888765443
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.48 E-value=2.6e+02 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=7.0
Q ss_pred HHHHhhhhcccccCcc
Q 007968 538 AEILSRRVGIGKRSKA 553 (583)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (583)
+.-...+.|-+...|+
T Consensus 34 ~iilS~kcrCk~~qk~ 49 (67)
T 2jp3_A 34 ALALSGKCKCRRNHTP 49 (67)
T ss_dssp HHHHTTHHHHHHTCCT
T ss_pred HHHHcCcccccCCCCC
Confidence 3344455544443333
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.47 E-value=6e+02 Score=19.17 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007968 520 YGLIGGIGTYIVLHLSDW 537 (583)
Q Consensus 520 ~GIa~G~i~yvll~l~~~ 537 (583)
.++..|+++-.++-...|
T Consensus 17 ~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445544444444444
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.68 E-value=4.9e+02 Score=20.98 Aligned_cols=20 Identities=55% Similarity=0.549 Sum_probs=10.2
Q ss_pred cccCccCCCcccccccCCCCC
Q 007968 548 GKRSKANNPSLKEEATNGNTN 568 (583)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~ 568 (583)
.+..+++||-.|+ +|.-..|
T Consensus 54 ~~w~~~~NPlyk~-~ttt~~n 73 (79)
T 2knc_B 54 AKWDTANNPLYKE-ATSTFTN 73 (79)
T ss_dssp HHHTTTTCCHHHH-CSCCSCC
T ss_pred cccccCCCCCccC-CccCccC
Confidence 3345567885554 4433333
No 8
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=7.86 E-value=5.1e+02 Score=19.84 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=13.3
Q ss_pred HHhhhcccccccchhhHH
Q 007968 489 RSVVEIEWDDMKQAIPAF 506 (583)
Q Consensus 489 ~~i~~I~~~~~~e~ipaf 506 (583)
.+++++.|-++.|..-..
T Consensus 13 ~ElkKV~WPtr~e~~~~T 30 (65)
T 3din_D 13 AEAKKISWPSRKELLTSF 30 (65)
T ss_dssp HHHHHHHHHHCCCCCTTH
T ss_pred HHHhcccCcCHHHHHhHH
Confidence 578899998888766443
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.20 E-value=6.2e+02 Score=17.69 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007968 518 VAYGLIGGIGTYIVLHLSDWAE 539 (583)
Q Consensus 518 I~~GIa~G~i~yvll~l~~~~~ 539 (583)
+..||.+|.+.-.+.-++.-++
T Consensus 5 lL~GIVlGlipvtlaGLfv~Ay 26 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHH
Confidence 4578888888777766554333
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.17 E-value=6.5e+02 Score=18.18 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007968 516 YSVAYGLIGGIGTYIVLHLS 535 (583)
Q Consensus 516 ~sI~~GIa~G~i~yvll~l~ 535 (583)
.+|+.|+..|+..-+++-+.
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~ 29 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLT 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHHH
Confidence 35777777777766655544
Done!